Multiple sequence alignment - TraesCS2D01G460400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G460400 chr2D 100.000 3947 0 0 1 3947 566992744 566996690 0.000000e+00 7289.0
1 TraesCS2D01G460400 chr2D 100.000 82 0 0 629 710 643312392 643312473 6.830000e-33 152.0
2 TraesCS2D01G460400 chr2D 94.444 36 2 0 2990 3025 566995691 566995726 5.510000e-04 56.5
3 TraesCS2D01G460400 chr2D 94.444 36 2 0 2948 2983 566995733 566995768 5.510000e-04 56.5
4 TraesCS2D01G460400 chr2D 100.000 28 0 0 586 613 566993261 566993288 7.000000e-03 52.8
5 TraesCS2D01G460400 chr2D 100.000 28 0 0 518 545 566993329 566993356 7.000000e-03 52.8
6 TraesCS2D01G460400 chr2A 92.560 3387 162 24 618 3947 706758377 706761730 0.000000e+00 4776.0
7 TraesCS2D01G460400 chr2A 79.205 327 34 16 259 580 706757394 706757691 3.110000e-46 196.0
8 TraesCS2D01G460400 chr2A 98.000 50 1 0 3780 3829 410338275 410338324 1.950000e-13 87.9
9 TraesCS2D01G460400 chr2A 100.000 31 0 0 2995 3025 706760737 706760767 1.530000e-04 58.4
10 TraesCS2D01G460400 chr2B 93.344 1818 89 14 624 2412 679903292 679905106 0.000000e+00 2658.0
11 TraesCS2D01G460400 chr2B 93.058 994 39 14 2978 3947 679906462 679907449 0.000000e+00 1426.0
12 TraesCS2D01G460400 chr2B 94.097 576 25 4 2411 2983 679905939 679906508 0.000000e+00 867.0
13 TraesCS2D01G460400 chr2B 84.225 374 36 9 214 579 679902698 679903056 3.780000e-90 342.0
14 TraesCS2D01G460400 chr2B 100.000 82 0 0 629 710 793534789 793534708 6.830000e-33 152.0
15 TraesCS2D01G460400 chr3D 98.864 88 1 0 628 715 418398130 418398217 1.470000e-34 158.0
16 TraesCS2D01G460400 chr3B 91.304 115 5 5 628 740 544794495 544794606 6.830000e-33 152.0
17 TraesCS2D01G460400 chr4A 86.765 136 17 1 2309 2444 652194546 652194680 2.460000e-32 150.0
18 TraesCS2D01G460400 chr5D 97.701 87 1 1 630 715 449271489 449271575 8.840000e-32 148.0
19 TraesCS2D01G460400 chr5B 96.591 88 2 1 629 715 548735798 548735711 1.140000e-30 145.0
20 TraesCS2D01G460400 chr3A 96.591 88 2 1 629 715 532662103 532662016 1.140000e-30 145.0
21 TraesCS2D01G460400 chr7A 85.075 134 19 1 2309 2442 43516435 43516567 6.880000e-28 135.0
22 TraesCS2D01G460400 chr1A 98.000 50 1 0 3780 3829 542956969 542957018 1.950000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G460400 chr2D 566992744 566996690 3946 False 1501.52 7289 97.777600 1 3947 5 chr2D.!!$F2 3946
1 TraesCS2D01G460400 chr2A 706757394 706761730 4336 False 1676.80 4776 90.588333 259 3947 3 chr2A.!!$F2 3688
2 TraesCS2D01G460400 chr2B 679902698 679907449 4751 False 1323.25 2658 91.181000 214 3947 4 chr2B.!!$F1 3733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.035056 CAGCGAAGTTTGGAGGGGAT 60.035 55.0 0.00 0.0 0.00 3.85 F
62 63 0.105039 ATAAGTGACCTAGCAGCCGC 59.895 55.0 0.00 0.0 38.99 6.53 F
208 209 0.107459 GCCAAGGGAAGACTAGCAGG 60.107 60.0 0.00 0.0 0.00 4.85 F
480 483 0.250513 GTTCGAAGGGGATGAGTGCT 59.749 55.0 0.00 0.0 0.00 4.40 F
613 1155 0.251386 TGAGGCTCGTCTCAGGAACT 60.251 55.0 10.42 0.0 38.70 3.01 F
1702 2412 0.384669 GGATGAGGCATTCAAGCTGC 59.615 55.0 0.00 0.0 39.77 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2531 0.762082 TAGGATGGCAGCCCTCAGAG 60.762 60.000 19.93 0.0 34.11 3.35 R
2037 2747 1.173913 CCATCCGAGGAACAAAACCC 58.826 55.000 0.00 0.0 0.00 4.11 R
2095 2805 3.282021 ACCACTGGCATGAACATACATC 58.718 45.455 0.00 0.0 0.00 3.06 R
2403 3122 1.056660 GTCCCTCCTTGAACTGTCCA 58.943 55.000 0.00 0.0 0.00 4.02 R
2428 3981 5.178067 CGTATATAAACGTTGCCTAAAGGGG 59.822 44.000 0.00 0.0 38.07 4.79 R
3414 4993 1.234821 TGGTGACGGTGAAATTGCTC 58.765 50.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.758993 AAGGGAGGTGGATCCATGA 57.241 52.632 19.62 0.00 41.52 3.07
19 20 1.516110 AAGGGAGGTGGATCCATGAG 58.484 55.000 19.62 0.00 41.52 2.90
20 21 1.059006 AGGGAGGTGGATCCATGAGC 61.059 60.000 19.62 4.42 41.52 4.26
21 22 1.059006 GGGAGGTGGATCCATGAGCT 61.059 60.000 19.62 10.06 41.52 4.09
22 23 0.842635 GGAGGTGGATCCATGAGCTT 59.157 55.000 19.62 0.25 39.34 3.74
23 24 1.476471 GGAGGTGGATCCATGAGCTTG 60.476 57.143 19.62 0.00 39.34 4.01
24 25 0.106819 AGGTGGATCCATGAGCTTGC 60.107 55.000 19.62 1.52 39.02 4.01
25 26 1.105759 GGTGGATCCATGAGCTTGCC 61.106 60.000 19.62 7.92 35.97 4.52
26 27 0.394762 GTGGATCCATGAGCTTGCCA 60.395 55.000 19.62 0.00 0.00 4.92
27 28 0.106868 TGGATCCATGAGCTTGCCAG 60.107 55.000 11.44 0.00 0.00 4.85
36 37 4.233408 GCTTGCCAGCGAAGTTTG 57.767 55.556 0.00 0.00 35.91 2.93
37 38 1.372128 GCTTGCCAGCGAAGTTTGG 60.372 57.895 0.00 0.00 35.91 3.28
38 39 1.795170 GCTTGCCAGCGAAGTTTGGA 61.795 55.000 0.00 0.00 36.70 3.53
39 40 0.239347 CTTGCCAGCGAAGTTTGGAG 59.761 55.000 0.00 0.00 36.70 3.86
40 41 1.172180 TTGCCAGCGAAGTTTGGAGG 61.172 55.000 0.00 0.00 36.70 4.30
41 42 2.335712 GCCAGCGAAGTTTGGAGGG 61.336 63.158 0.00 0.00 36.70 4.30
42 43 1.675641 CCAGCGAAGTTTGGAGGGG 60.676 63.158 0.00 0.00 36.70 4.79
43 44 1.374947 CAGCGAAGTTTGGAGGGGA 59.625 57.895 0.00 0.00 0.00 4.81
44 45 0.035056 CAGCGAAGTTTGGAGGGGAT 60.035 55.000 0.00 0.00 0.00 3.85
45 46 1.209504 CAGCGAAGTTTGGAGGGGATA 59.790 52.381 0.00 0.00 0.00 2.59
46 47 1.913419 AGCGAAGTTTGGAGGGGATAA 59.087 47.619 0.00 0.00 0.00 1.75
47 48 2.092914 AGCGAAGTTTGGAGGGGATAAG 60.093 50.000 0.00 0.00 0.00 1.73
48 49 2.355818 GCGAAGTTTGGAGGGGATAAGT 60.356 50.000 0.00 0.00 0.00 2.24
49 50 3.270877 CGAAGTTTGGAGGGGATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
50 51 3.055385 CGAAGTTTGGAGGGGATAAGTGA 60.055 47.826 0.00 0.00 0.00 3.41
51 52 4.262617 GAAGTTTGGAGGGGATAAGTGAC 58.737 47.826 0.00 0.00 0.00 3.67
52 53 2.576648 AGTTTGGAGGGGATAAGTGACC 59.423 50.000 0.00 0.00 0.00 4.02
53 54 2.576648 GTTTGGAGGGGATAAGTGACCT 59.423 50.000 0.00 0.00 35.67 3.85
54 55 3.778629 GTTTGGAGGGGATAAGTGACCTA 59.221 47.826 0.00 0.00 32.42 3.08
55 56 3.330126 TGGAGGGGATAAGTGACCTAG 57.670 52.381 0.00 0.00 32.42 3.02
56 57 1.972075 GGAGGGGATAAGTGACCTAGC 59.028 57.143 0.00 0.00 32.42 3.42
57 58 2.679082 GAGGGGATAAGTGACCTAGCA 58.321 52.381 0.00 0.00 32.42 3.49
58 59 2.630580 GAGGGGATAAGTGACCTAGCAG 59.369 54.545 0.00 0.00 32.42 4.24
59 60 1.070914 GGGGATAAGTGACCTAGCAGC 59.929 57.143 0.00 0.00 0.00 5.25
60 61 1.070914 GGGATAAGTGACCTAGCAGCC 59.929 57.143 0.00 0.00 0.00 4.85
61 62 1.269831 GGATAAGTGACCTAGCAGCCG 60.270 57.143 0.00 0.00 0.00 5.52
62 63 0.105039 ATAAGTGACCTAGCAGCCGC 59.895 55.000 0.00 0.00 38.99 6.53
63 64 1.254975 TAAGTGACCTAGCAGCCGCA 61.255 55.000 0.00 0.00 42.27 5.69
64 65 2.510238 GTGACCTAGCAGCCGCAG 60.510 66.667 0.00 0.00 42.27 5.18
65 66 2.997315 TGACCTAGCAGCCGCAGT 60.997 61.111 0.00 0.00 42.27 4.40
66 67 2.202810 GACCTAGCAGCCGCAGTC 60.203 66.667 0.00 0.00 42.27 3.51
67 68 2.997315 ACCTAGCAGCCGCAGTCA 60.997 61.111 0.00 0.00 42.27 3.41
68 69 2.510238 CCTAGCAGCCGCAGTCAC 60.510 66.667 0.00 0.00 42.27 3.67
69 70 2.262603 CTAGCAGCCGCAGTCACA 59.737 61.111 0.00 0.00 42.27 3.58
70 71 1.374631 CTAGCAGCCGCAGTCACAA 60.375 57.895 0.00 0.00 42.27 3.33
71 72 1.357258 CTAGCAGCCGCAGTCACAAG 61.357 60.000 0.00 0.00 42.27 3.16
72 73 1.815817 TAGCAGCCGCAGTCACAAGA 61.816 55.000 0.00 0.00 42.27 3.02
73 74 2.675056 GCAGCCGCAGTCACAAGAG 61.675 63.158 0.00 0.00 38.36 2.85
74 75 1.005748 CAGCCGCAGTCACAAGAGA 60.006 57.895 0.00 0.00 0.00 3.10
75 76 1.013005 CAGCCGCAGTCACAAGAGAG 61.013 60.000 0.00 0.00 0.00 3.20
76 77 1.181741 AGCCGCAGTCACAAGAGAGA 61.182 55.000 0.00 0.00 0.00 3.10
77 78 0.319900 GCCGCAGTCACAAGAGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
78 79 1.873903 GCCGCAGTCACAAGAGAGAAA 60.874 52.381 0.00 0.00 0.00 2.52
79 80 2.064762 CCGCAGTCACAAGAGAGAAAG 58.935 52.381 0.00 0.00 0.00 2.62
80 81 2.288457 CCGCAGTCACAAGAGAGAAAGA 60.288 50.000 0.00 0.00 0.00 2.52
81 82 2.985809 CGCAGTCACAAGAGAGAAAGAG 59.014 50.000 0.00 0.00 0.00 2.85
82 83 3.304996 CGCAGTCACAAGAGAGAAAGAGA 60.305 47.826 0.00 0.00 0.00 3.10
83 84 4.626042 GCAGTCACAAGAGAGAAAGAGAA 58.374 43.478 0.00 0.00 0.00 2.87
84 85 5.053145 GCAGTCACAAGAGAGAAAGAGAAA 58.947 41.667 0.00 0.00 0.00 2.52
85 86 5.525378 GCAGTCACAAGAGAGAAAGAGAAAA 59.475 40.000 0.00 0.00 0.00 2.29
86 87 6.037610 GCAGTCACAAGAGAGAAAGAGAAAAA 59.962 38.462 0.00 0.00 0.00 1.94
87 88 7.405769 CAGTCACAAGAGAGAAAGAGAAAAAC 58.594 38.462 0.00 0.00 0.00 2.43
88 89 7.279758 CAGTCACAAGAGAGAAAGAGAAAAACT 59.720 37.037 0.00 0.00 0.00 2.66
89 90 8.478877 AGTCACAAGAGAGAAAGAGAAAAACTA 58.521 33.333 0.00 0.00 0.00 2.24
90 91 9.099454 GTCACAAGAGAGAAAGAGAAAAACTAA 57.901 33.333 0.00 0.00 0.00 2.24
91 92 9.838339 TCACAAGAGAGAAAGAGAAAAACTAAT 57.162 29.630 0.00 0.00 0.00 1.73
93 94 9.838339 ACAAGAGAGAAAGAGAAAAACTAATCA 57.162 29.630 0.00 0.00 0.00 2.57
95 96 9.500785 AAGAGAGAAAGAGAAAAACTAATCAGG 57.499 33.333 0.00 0.00 0.00 3.86
96 97 8.100164 AGAGAGAAAGAGAAAAACTAATCAGGG 58.900 37.037 0.00 0.00 0.00 4.45
97 98 7.171653 AGAGAAAGAGAAAAACTAATCAGGGG 58.828 38.462 0.00 0.00 0.00 4.79
98 99 7.017651 AGAGAAAGAGAAAAACTAATCAGGGGA 59.982 37.037 0.00 0.00 0.00 4.81
99 100 6.943146 AGAAAGAGAAAAACTAATCAGGGGAC 59.057 38.462 0.00 0.00 0.00 4.46
100 101 4.833390 AGAGAAAAACTAATCAGGGGACG 58.167 43.478 0.00 0.00 0.00 4.79
101 102 4.286291 AGAGAAAAACTAATCAGGGGACGT 59.714 41.667 0.00 0.00 0.00 4.34
102 103 4.981812 AGAAAAACTAATCAGGGGACGTT 58.018 39.130 0.00 0.00 0.00 3.99
103 104 5.382616 AGAAAAACTAATCAGGGGACGTTT 58.617 37.500 0.00 0.00 0.00 3.60
104 105 5.240844 AGAAAAACTAATCAGGGGACGTTTG 59.759 40.000 0.00 0.00 0.00 2.93
105 106 4.360951 AAACTAATCAGGGGACGTTTGA 57.639 40.909 0.00 0.00 0.00 2.69
106 107 3.611766 ACTAATCAGGGGACGTTTGAG 57.388 47.619 0.00 0.00 0.00 3.02
107 108 2.236395 ACTAATCAGGGGACGTTTGAGG 59.764 50.000 0.00 0.00 0.00 3.86
108 109 0.322546 AATCAGGGGACGTTTGAGGC 60.323 55.000 0.00 0.00 0.00 4.70
109 110 1.201429 ATCAGGGGACGTTTGAGGCT 61.201 55.000 0.00 0.00 0.00 4.58
110 111 1.376037 CAGGGGACGTTTGAGGCTC 60.376 63.158 7.79 7.79 0.00 4.70
111 112 1.841556 AGGGGACGTTTGAGGCTCA 60.842 57.895 14.43 14.43 0.00 4.26
112 113 1.201429 AGGGGACGTTTGAGGCTCAT 61.201 55.000 19.50 2.42 0.00 2.90
113 114 0.744771 GGGGACGTTTGAGGCTCATC 60.745 60.000 19.50 12.55 0.00 2.92
114 115 0.250513 GGGACGTTTGAGGCTCATCT 59.749 55.000 19.50 0.53 0.00 2.90
115 116 1.339151 GGGACGTTTGAGGCTCATCTT 60.339 52.381 19.50 8.37 0.00 2.40
116 117 2.427506 GGACGTTTGAGGCTCATCTTT 58.572 47.619 19.50 3.37 0.00 2.52
117 118 3.596214 GGACGTTTGAGGCTCATCTTTA 58.404 45.455 19.50 0.00 0.00 1.85
118 119 3.619038 GGACGTTTGAGGCTCATCTTTAG 59.381 47.826 19.50 9.33 0.00 1.85
119 120 3.600388 ACGTTTGAGGCTCATCTTTAGG 58.400 45.455 19.50 9.52 0.00 2.69
120 121 3.260884 ACGTTTGAGGCTCATCTTTAGGA 59.739 43.478 19.50 0.00 0.00 2.94
121 122 4.253685 CGTTTGAGGCTCATCTTTAGGAA 58.746 43.478 19.50 3.83 0.00 3.36
122 123 4.878397 CGTTTGAGGCTCATCTTTAGGAAT 59.122 41.667 19.50 0.00 0.00 3.01
123 124 6.049149 CGTTTGAGGCTCATCTTTAGGAATA 58.951 40.000 19.50 0.00 0.00 1.75
124 125 6.201806 CGTTTGAGGCTCATCTTTAGGAATAG 59.798 42.308 19.50 2.28 0.00 1.73
125 126 7.275920 GTTTGAGGCTCATCTTTAGGAATAGA 58.724 38.462 19.50 0.00 0.00 1.98
126 127 7.437713 TTGAGGCTCATCTTTAGGAATAGAA 57.562 36.000 19.50 0.00 0.00 2.10
127 128 7.437713 TGAGGCTCATCTTTAGGAATAGAAA 57.562 36.000 14.43 0.00 0.00 2.52
128 129 7.275920 TGAGGCTCATCTTTAGGAATAGAAAC 58.724 38.462 14.43 0.00 0.00 2.78
129 130 6.596621 AGGCTCATCTTTAGGAATAGAAACC 58.403 40.000 0.00 0.00 0.00 3.27
130 131 5.765677 GGCTCATCTTTAGGAATAGAAACCC 59.234 44.000 0.00 0.00 0.00 4.11
131 132 6.409810 GGCTCATCTTTAGGAATAGAAACCCT 60.410 42.308 0.00 0.00 0.00 4.34
132 133 7.057264 GCTCATCTTTAGGAATAGAAACCCTT 58.943 38.462 0.00 0.00 0.00 3.95
133 134 8.211629 GCTCATCTTTAGGAATAGAAACCCTTA 58.788 37.037 0.00 0.00 0.00 2.69
135 136 9.901172 TCATCTTTAGGAATAGAAACCCTTAAC 57.099 33.333 0.00 0.00 0.00 2.01
136 137 9.681062 CATCTTTAGGAATAGAAACCCTTAACA 57.319 33.333 0.00 0.00 0.00 2.41
138 139 9.734984 TCTTTAGGAATAGAAACCCTTAACAAG 57.265 33.333 0.00 0.00 0.00 3.16
139 140 9.516546 CTTTAGGAATAGAAACCCTTAACAAGT 57.483 33.333 0.00 0.00 0.00 3.16
140 141 9.511272 TTTAGGAATAGAAACCCTTAACAAGTC 57.489 33.333 0.00 0.00 0.00 3.01
141 142 7.086685 AGGAATAGAAACCCTTAACAAGTCA 57.913 36.000 0.00 0.00 0.00 3.41
142 143 7.523415 AGGAATAGAAACCCTTAACAAGTCAA 58.477 34.615 0.00 0.00 0.00 3.18
143 144 8.002459 AGGAATAGAAACCCTTAACAAGTCAAA 58.998 33.333 0.00 0.00 0.00 2.69
144 145 8.635328 GGAATAGAAACCCTTAACAAGTCAAAA 58.365 33.333 0.00 0.00 0.00 2.44
147 148 9.981114 ATAGAAACCCTTAACAAGTCAAAAATG 57.019 29.630 0.00 0.00 0.00 2.32
148 149 8.073467 AGAAACCCTTAACAAGTCAAAAATGA 57.927 30.769 0.00 0.00 0.00 2.57
149 150 8.536175 AGAAACCCTTAACAAGTCAAAAATGAA 58.464 29.630 0.00 0.00 0.00 2.57
150 151 8.716646 AAACCCTTAACAAGTCAAAAATGAAG 57.283 30.769 0.00 0.00 0.00 3.02
151 152 7.654022 ACCCTTAACAAGTCAAAAATGAAGA 57.346 32.000 0.00 0.00 0.00 2.87
152 153 8.073467 ACCCTTAACAAGTCAAAAATGAAGAA 57.927 30.769 0.00 0.00 0.00 2.52
153 154 8.197439 ACCCTTAACAAGTCAAAAATGAAGAAG 58.803 33.333 0.00 0.00 0.00 2.85
154 155 8.197439 CCCTTAACAAGTCAAAAATGAAGAAGT 58.803 33.333 0.00 0.00 0.00 3.01
155 156 9.586435 CCTTAACAAGTCAAAAATGAAGAAGTT 57.414 29.630 0.00 0.00 0.00 2.66
159 160 9.921637 AACAAGTCAAAAATGAAGAAGTTTACA 57.078 25.926 0.00 0.00 0.00 2.41
160 161 9.921637 ACAAGTCAAAAATGAAGAAGTTTACAA 57.078 25.926 0.00 0.00 0.00 2.41
163 164 9.586435 AGTCAAAAATGAAGAAGTTTACAAAGG 57.414 29.630 0.00 0.00 0.00 3.11
164 165 9.581099 GTCAAAAATGAAGAAGTTTACAAAGGA 57.419 29.630 0.00 0.00 0.00 3.36
165 166 9.801873 TCAAAAATGAAGAAGTTTACAAAGGAG 57.198 29.630 0.00 0.00 0.00 3.69
166 167 9.801873 CAAAAATGAAGAAGTTTACAAAGGAGA 57.198 29.630 0.00 0.00 0.00 3.71
169 170 7.929941 ATGAAGAAGTTTACAAAGGAGATCC 57.070 36.000 0.00 0.00 0.00 3.36
170 171 6.238648 TGAAGAAGTTTACAAAGGAGATCCC 58.761 40.000 0.00 0.00 36.42 3.85
171 172 5.843019 AGAAGTTTACAAAGGAGATCCCA 57.157 39.130 0.00 0.00 37.41 4.37
172 173 6.200878 AGAAGTTTACAAAGGAGATCCCAA 57.799 37.500 0.00 0.00 37.41 4.12
173 174 6.610830 AGAAGTTTACAAAGGAGATCCCAAA 58.389 36.000 0.00 0.00 37.41 3.28
174 175 7.241628 AGAAGTTTACAAAGGAGATCCCAAAT 58.758 34.615 0.00 0.00 37.41 2.32
175 176 7.730332 AGAAGTTTACAAAGGAGATCCCAAATT 59.270 33.333 0.00 0.00 37.41 1.82
176 177 7.468141 AGTTTACAAAGGAGATCCCAAATTC 57.532 36.000 0.00 0.00 37.41 2.17
177 178 7.010160 AGTTTACAAAGGAGATCCCAAATTCA 58.990 34.615 0.00 0.00 37.41 2.57
178 179 7.675619 AGTTTACAAAGGAGATCCCAAATTCAT 59.324 33.333 0.00 0.00 37.41 2.57
179 180 8.966868 GTTTACAAAGGAGATCCCAAATTCATA 58.033 33.333 0.00 0.00 37.41 2.15
180 181 9.713684 TTTACAAAGGAGATCCCAAATTCATAT 57.286 29.630 0.00 0.00 37.41 1.78
181 182 7.592885 ACAAAGGAGATCCCAAATTCATATG 57.407 36.000 0.00 0.00 37.41 1.78
182 183 7.356680 ACAAAGGAGATCCCAAATTCATATGA 58.643 34.615 0.00 0.00 37.41 2.15
183 184 7.840716 ACAAAGGAGATCCCAAATTCATATGAA 59.159 33.333 20.07 20.07 36.46 2.57
184 185 8.698210 CAAAGGAGATCCCAAATTCATATGAAA 58.302 33.333 21.50 5.04 35.94 2.69
185 186 8.843308 AAGGAGATCCCAAATTCATATGAAAA 57.157 30.769 21.50 0.48 35.94 2.29
186 187 9.443365 AAGGAGATCCCAAATTCATATGAAAAT 57.557 29.630 21.50 11.18 35.94 1.82
191 192 9.374838 GATCCCAAATTCATATGAAAATATGCC 57.625 33.333 21.50 5.32 37.61 4.40
192 193 8.260099 TCCCAAATTCATATGAAAATATGCCA 57.740 30.769 21.50 0.00 37.61 4.92
193 194 8.712103 TCCCAAATTCATATGAAAATATGCCAA 58.288 29.630 21.50 0.00 37.61 4.52
194 195 8.995220 CCCAAATTCATATGAAAATATGCCAAG 58.005 33.333 21.50 6.31 37.61 3.61
195 196 8.995220 CCAAATTCATATGAAAATATGCCAAGG 58.005 33.333 21.50 8.50 37.61 3.61
196 197 8.995220 CAAATTCATATGAAAATATGCCAAGGG 58.005 33.333 21.50 0.00 37.61 3.95
197 198 8.495160 AATTCATATGAAAATATGCCAAGGGA 57.505 30.769 21.50 0.00 37.61 4.20
198 199 7.911130 TTCATATGAAAATATGCCAAGGGAA 57.089 32.000 15.82 0.00 35.16 3.97
199 200 7.528996 TCATATGAAAATATGCCAAGGGAAG 57.471 36.000 1.98 0.00 35.16 3.46
200 201 7.296856 TCATATGAAAATATGCCAAGGGAAGA 58.703 34.615 1.98 0.00 35.16 2.87
201 202 5.859205 ATGAAAATATGCCAAGGGAAGAC 57.141 39.130 0.00 0.00 0.00 3.01
202 203 4.934356 TGAAAATATGCCAAGGGAAGACT 58.066 39.130 0.00 0.00 0.00 3.24
203 204 6.073447 TGAAAATATGCCAAGGGAAGACTA 57.927 37.500 0.00 0.00 0.00 2.59
204 205 6.122277 TGAAAATATGCCAAGGGAAGACTAG 58.878 40.000 0.00 0.00 0.00 2.57
205 206 3.778954 ATATGCCAAGGGAAGACTAGC 57.221 47.619 0.00 0.00 0.00 3.42
206 207 1.289160 ATGCCAAGGGAAGACTAGCA 58.711 50.000 0.00 0.00 35.28 3.49
207 208 0.615331 TGCCAAGGGAAGACTAGCAG 59.385 55.000 0.00 0.00 0.00 4.24
208 209 0.107459 GCCAAGGGAAGACTAGCAGG 60.107 60.000 0.00 0.00 0.00 4.85
209 210 1.573108 CCAAGGGAAGACTAGCAGGA 58.427 55.000 0.00 0.00 0.00 3.86
210 211 1.484240 CCAAGGGAAGACTAGCAGGAG 59.516 57.143 0.00 0.00 0.00 3.69
211 212 2.461695 CAAGGGAAGACTAGCAGGAGA 58.538 52.381 0.00 0.00 0.00 3.71
212 213 2.153034 AGGGAAGACTAGCAGGAGAC 57.847 55.000 0.00 0.00 0.00 3.36
225 226 0.538287 AGGAGACTGGCCACAAAAGC 60.538 55.000 0.00 0.00 41.13 3.51
240 241 3.134442 ACAAAAGCATGAACAACCACCAT 59.866 39.130 0.00 0.00 0.00 3.55
249 250 1.285641 CAACCACCATCAACGCCAC 59.714 57.895 0.00 0.00 0.00 5.01
253 254 0.602562 CCACCATCAACGCCACAAAT 59.397 50.000 0.00 0.00 0.00 2.32
257 258 3.059733 CACCATCAACGCCACAAATTTTG 60.060 43.478 7.59 7.59 0.00 2.44
286 287 2.992114 AGGCGCTCCTCGTGAAGT 60.992 61.111 7.64 0.00 38.72 3.01
298 299 6.037786 TCCTCGTGAAGTATCTTCACAAAT 57.962 37.500 29.28 0.00 46.70 2.32
334 335 3.657727 TCCTCTTCCTTGGGTTCTTGATT 59.342 43.478 0.00 0.00 0.00 2.57
335 336 4.013050 CCTCTTCCTTGGGTTCTTGATTC 58.987 47.826 0.00 0.00 0.00 2.52
361 362 9.782028 CGATTTGTACAGTTTCAAAAATGATTG 57.218 29.630 9.64 0.00 37.42 2.67
372 373 9.462174 GTTTCAAAAATGATTGTGTCTATGTCA 57.538 29.630 0.00 0.00 0.00 3.58
415 417 8.181904 AGTTTCTTAAGCTTCAATCAATTCCA 57.818 30.769 0.00 0.00 0.00 3.53
440 443 8.526681 CAAAAAGAAAAGTTCGACTTCAATCAG 58.473 33.333 0.00 0.00 37.47 2.90
445 448 8.091449 AGAAAAGTTCGACTTCAATCAGTCTAT 58.909 33.333 0.00 0.00 41.09 1.98
448 451 4.046938 TCGACTTCAATCAGTCTATGGC 57.953 45.455 0.00 0.00 41.09 4.40
453 456 2.923121 TCAATCAGTCTATGGCCTTGC 58.077 47.619 3.32 0.00 0.00 4.01
480 483 0.250513 GTTCGAAGGGGATGAGTGCT 59.749 55.000 0.00 0.00 0.00 4.40
505 508 1.295423 GCCGTAGTTGCAAGAGGGA 59.705 57.895 19.39 0.00 0.00 4.20
523 530 2.613223 GGGAAAGAGAAACCAGGAGACG 60.613 54.545 0.00 0.00 0.00 4.18
546 556 0.820871 GAGGCTCGTCTCAGGAACAT 59.179 55.000 0.00 0.00 34.13 2.71
548 558 2.028130 AGGCTCGTCTCAGGAACATAG 58.972 52.381 0.00 0.00 0.00 2.23
564 575 9.238368 CAGGAACATAGACCTTAACCAAATTAA 57.762 33.333 0.00 0.00 33.91 1.40
570 581 9.801873 CATAGACCTTAACCAAATTAACAATGG 57.198 33.333 2.33 2.33 40.16 3.16
581 592 9.143155 ACCAAATTAACAATGGAGAAGTTTACT 57.857 29.630 9.36 0.00 37.66 2.24
582 593 9.981114 CCAAATTAACAATGGAGAAGTTTACTT 57.019 29.630 0.00 0.00 36.19 2.24
588 599 8.567285 AACAATGGAGAAGTTTACTTATGGAG 57.433 34.615 0.00 0.00 36.11 3.86
589 600 7.918076 ACAATGGAGAAGTTTACTTATGGAGA 58.082 34.615 0.00 0.00 36.11 3.71
591 602 5.962433 TGGAGAAGTTTACTTATGGAGACG 58.038 41.667 0.00 0.00 36.11 4.18
592 603 5.479375 TGGAGAAGTTTACTTATGGAGACGT 59.521 40.000 0.00 0.00 36.11 4.34
593 604 6.014840 TGGAGAAGTTTACTTATGGAGACGTT 60.015 38.462 0.00 0.00 36.11 3.99
613 1155 0.251386 TGAGGCTCGTCTCAGGAACT 60.251 55.000 10.42 0.00 38.70 3.01
614 1156 0.892063 GAGGCTCGTCTCAGGAACTT 59.108 55.000 0.00 0.00 34.60 2.66
615 1157 0.892063 AGGCTCGTCTCAGGAACTTC 59.108 55.000 0.00 0.00 34.60 3.01
616 1158 0.456995 GGCTCGTCTCAGGAACTTCG 60.457 60.000 0.00 0.00 34.60 3.79
625 1307 1.613925 TCAGGAACTTCGAGGTGAGTG 59.386 52.381 0.00 0.00 34.60 3.51
627 1309 2.232452 CAGGAACTTCGAGGTGAGTGAT 59.768 50.000 0.00 0.00 34.60 3.06
632 1314 5.699458 GGAACTTCGAGGTGAGTGATAAAAA 59.301 40.000 0.00 0.00 0.00 1.94
717 1399 1.492873 CACGCGGTCATGTTGTGAG 59.507 57.895 12.47 0.00 37.56 3.51
749 1431 9.929180 TCATACTGAAAGCTATACATACATTCC 57.071 33.333 0.00 0.00 37.60 3.01
929 1625 2.037772 CTCCTTCCTTGCTACACACACT 59.962 50.000 0.00 0.00 0.00 3.55
930 1626 2.438021 TCCTTCCTTGCTACACACACTT 59.562 45.455 0.00 0.00 0.00 3.16
958 1656 1.202580 CCCGATAAGCTCTCCAACCAG 60.203 57.143 0.00 0.00 0.00 4.00
962 1672 1.562672 TAAGCTCTCCAACCAGCCCC 61.563 60.000 0.00 0.00 36.17 5.80
963 1673 4.785453 GCTCTCCAACCAGCCCCG 62.785 72.222 0.00 0.00 0.00 5.73
1404 2114 2.353607 CTCTACGCGATGCCCGAC 60.354 66.667 15.93 0.00 41.76 4.79
1455 2165 0.390340 ACTACGTGCTCCACATGCTG 60.390 55.000 0.00 0.00 39.03 4.41
1458 2168 2.683859 CGTGCTCCACATGCTGGTG 61.684 63.158 12.26 11.23 41.52 4.17
1463 2173 1.152798 TCCACATGCTGGTGTGCAA 60.153 52.632 12.26 1.27 46.27 4.08
1581 2291 2.029918 GTGCCAGTTTGGGAGATTCAAC 60.030 50.000 0.00 0.00 39.03 3.18
1593 2303 1.630878 AGATTCAACGAGGCCCTTTCT 59.369 47.619 0.00 0.00 0.00 2.52
1674 2384 0.677731 TGCATTTCCTCTGCCGGAAG 60.678 55.000 5.05 3.22 43.49 3.46
1675 2385 0.392998 GCATTTCCTCTGCCGGAAGA 60.393 55.000 12.92 12.92 43.49 2.87
1696 2406 1.224315 CGGGTGGATGAGGCATTCA 59.776 57.895 0.00 0.00 40.85 2.57
1702 2412 0.384669 GGATGAGGCATTCAAGCTGC 59.615 55.000 0.00 0.00 39.77 5.25
1821 2531 3.849911 TGATCTGTTCAAGTCGATGTCC 58.150 45.455 0.00 0.00 0.00 4.02
1851 2561 1.494721 TGCCATCCTAATTCAGGGACC 59.505 52.381 0.00 0.00 45.58 4.46
1933 2643 7.124298 ACCTAGTTACTATGATGAGTGCTGAAA 59.876 37.037 1.83 0.00 0.00 2.69
1941 2651 3.575687 TGATGAGTGCTGAAAGTCTGAGA 59.424 43.478 0.00 0.00 35.30 3.27
2095 2805 9.553064 AACTTCTTACATCCTTATTATGCTGAG 57.447 33.333 0.00 0.00 0.00 3.35
2146 2863 4.460263 ACCTGACAATACACTTGAGCAAA 58.540 39.130 0.00 0.00 0.00 3.68
2197 2914 2.282674 CCTGCCTGCCTTTCTGCA 60.283 61.111 0.00 0.00 39.37 4.41
2217 2934 5.002464 GCATGGACTTGCATATTGAAGTT 57.998 39.130 5.43 0.00 42.31 2.66
2222 2939 6.422333 TGGACTTGCATATTGAAGTTGGATA 58.578 36.000 0.00 0.00 32.47 2.59
2307 3026 8.712228 ATGACTCATATACTGATGTACCTGAA 57.288 34.615 0.00 0.00 32.10 3.02
2403 3122 8.512966 GAAGGCTCATTTTCTTCCTAACTAAT 57.487 34.615 0.00 0.00 32.94 1.73
2412 3131 8.617290 TTTTCTTCCTAACTAATGGACAGTTC 57.383 34.615 0.00 0.00 37.42 3.01
2511 4064 0.689055 TCAACATCAGTGCAGGCTCT 59.311 50.000 0.00 0.00 0.00 4.09
2566 4119 6.073331 GGTAAGCTCATGACATTATGCTCTTC 60.073 42.308 5.46 0.94 0.00 2.87
2943 4514 4.668138 TTGGGGCCTAAGAGTAAACATT 57.332 40.909 0.84 0.00 0.00 2.71
2944 4515 5.782677 TTGGGGCCTAAGAGTAAACATTA 57.217 39.130 0.84 0.00 0.00 1.90
2945 4516 5.782677 TGGGGCCTAAGAGTAAACATTAA 57.217 39.130 0.84 0.00 0.00 1.40
2946 4517 5.503002 TGGGGCCTAAGAGTAAACATTAAC 58.497 41.667 0.84 0.00 0.00 2.01
2947 4518 4.885907 GGGGCCTAAGAGTAAACATTAACC 59.114 45.833 0.84 0.00 0.00 2.85
2948 4519 4.885907 GGGCCTAAGAGTAAACATTAACCC 59.114 45.833 0.84 0.00 0.00 4.11
2949 4520 4.885907 GGCCTAAGAGTAAACATTAACCCC 59.114 45.833 0.00 0.00 0.00 4.95
2950 4521 5.339778 GGCCTAAGAGTAAACATTAACCCCT 60.340 44.000 0.00 0.00 0.00 4.79
2951 4522 6.185511 GCCTAAGAGTAAACATTAACCCCTT 58.814 40.000 0.00 0.00 0.00 3.95
2952 4523 6.095021 GCCTAAGAGTAAACATTAACCCCTTG 59.905 42.308 0.00 0.00 0.00 3.61
2953 4524 6.602009 CCTAAGAGTAAACATTAACCCCTTGG 59.398 42.308 0.00 0.00 37.80 3.61
2954 4525 5.853572 AGAGTAAACATTAACCCCTTGGA 57.146 39.130 0.00 0.00 34.81 3.53
2955 4526 5.816682 AGAGTAAACATTAACCCCTTGGAG 58.183 41.667 0.00 0.00 34.81 3.86
2956 4527 5.312443 AGAGTAAACATTAACCCCTTGGAGT 59.688 40.000 0.00 0.00 34.81 3.85
2957 4528 6.502863 AGAGTAAACATTAACCCCTTGGAGTA 59.497 38.462 0.00 0.00 34.81 2.59
2958 4529 7.017850 AGAGTAAACATTAACCCCTTGGAGTAA 59.982 37.037 0.00 0.00 34.81 2.24
2959 4530 7.528675 AGTAAACATTAACCCCTTGGAGTAAA 58.471 34.615 0.00 0.00 34.81 2.01
2960 4531 6.659745 AAACATTAACCCCTTGGAGTAAAC 57.340 37.500 0.00 0.00 34.81 2.01
2961 4532 5.327737 ACATTAACCCCTTGGAGTAAACA 57.672 39.130 0.00 0.00 34.81 2.83
2962 4533 5.899278 ACATTAACCCCTTGGAGTAAACAT 58.101 37.500 0.00 0.00 34.81 2.71
2992 4563 5.523916 CCTTTACTCAAGTTGTATCATCCCG 59.476 44.000 2.11 0.00 0.00 5.14
3039 4610 4.751060 TCAAGTTGCCGTATATCTCGTTT 58.249 39.130 0.00 0.00 0.00 3.60
3052 4623 8.631695 CGTATATCTCGTTTGAAGATAAGAAGC 58.368 37.037 0.00 0.00 0.00 3.86
3172 4746 2.034305 ACTGCCGGCTTAGAGTAATACG 59.966 50.000 29.70 0.00 0.00 3.06
3406 4985 7.837202 AATTTTACCGTCTTCATGTATCGAA 57.163 32.000 0.00 0.00 0.00 3.71
3444 5023 2.945008 CACCGTCACCATCTGCATTATT 59.055 45.455 0.00 0.00 0.00 1.40
3447 5026 3.303329 CCGTCACCATCTGCATTATTTCG 60.303 47.826 0.00 0.00 0.00 3.46
3481 5060 0.972983 AGCCGTAGAGCTGTGTGGAT 60.973 55.000 7.31 0.00 42.95 3.41
3488 5067 1.364626 GAGCTGTGTGGATGAAGGCG 61.365 60.000 0.00 0.00 0.00 5.52
3498 5077 3.058639 GTGGATGAAGGCGATTCTTATGC 60.059 47.826 0.00 0.00 38.83 3.14
3708 5301 3.007614 AGCGACCCAGTTTTCTAGCTTAA 59.992 43.478 0.00 0.00 0.00 1.85
3729 5322 3.408634 ACATTCGCTAATTATTCGGGGG 58.591 45.455 7.22 0.00 0.00 5.40
3760 5355 5.897377 AGGCACTACCAATTATCAAACAC 57.103 39.130 0.00 0.00 43.14 3.32
3766 5361 7.114811 GCACTACCAATTATCAAACACAACAAG 59.885 37.037 0.00 0.00 0.00 3.16
3837 5432 7.257722 CACCACCAATTATCAAATAGAACCAC 58.742 38.462 0.00 0.00 0.00 4.16
3854 5449 9.838339 ATAGAACCACGAAGAATCATTCTAAAT 57.162 29.630 0.00 0.00 39.61 1.40
3856 5451 9.667107 AGAACCACGAAGAATCATTCTAAATTA 57.333 29.630 0.00 0.00 39.61 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.516110 CTCATGGATCCACCTCCCTT 58.484 55.000 18.99 0.00 39.86 3.95
1 2 1.059006 GCTCATGGATCCACCTCCCT 61.059 60.000 18.99 0.00 39.86 4.20
2 3 1.059006 AGCTCATGGATCCACCTCCC 61.059 60.000 18.99 4.86 39.86 4.30
3 4 0.842635 AAGCTCATGGATCCACCTCC 59.157 55.000 18.99 6.39 39.86 4.30
4 5 1.964552 CAAGCTCATGGATCCACCTC 58.035 55.000 18.99 6.80 39.86 3.85
5 6 0.106819 GCAAGCTCATGGATCCACCT 60.107 55.000 18.99 8.39 39.86 4.00
6 7 1.105759 GGCAAGCTCATGGATCCACC 61.106 60.000 18.99 7.35 39.54 4.61
7 8 0.394762 TGGCAAGCTCATGGATCCAC 60.395 55.000 18.99 3.96 0.00 4.02
8 9 0.106868 CTGGCAAGCTCATGGATCCA 60.107 55.000 18.88 18.88 0.00 3.41
9 10 1.453762 GCTGGCAAGCTCATGGATCC 61.454 60.000 5.60 4.20 46.60 3.36
10 11 2.031360 GCTGGCAAGCTCATGGATC 58.969 57.895 5.60 0.00 46.60 3.36
11 12 4.254721 GCTGGCAAGCTCATGGAT 57.745 55.556 5.60 0.00 46.60 3.41
19 20 1.372128 CCAAACTTCGCTGGCAAGC 60.372 57.895 1.77 1.77 46.66 4.01
20 21 0.239347 CTCCAAACTTCGCTGGCAAG 59.761 55.000 0.00 0.00 32.33 4.01
21 22 1.172180 CCTCCAAACTTCGCTGGCAA 61.172 55.000 0.00 0.00 32.33 4.52
22 23 1.600636 CCTCCAAACTTCGCTGGCA 60.601 57.895 0.00 0.00 32.33 4.92
23 24 2.335712 CCCTCCAAACTTCGCTGGC 61.336 63.158 0.00 0.00 32.33 4.85
24 25 1.675641 CCCCTCCAAACTTCGCTGG 60.676 63.158 0.00 0.00 0.00 4.85
25 26 0.035056 ATCCCCTCCAAACTTCGCTG 60.035 55.000 0.00 0.00 0.00 5.18
26 27 1.580059 TATCCCCTCCAAACTTCGCT 58.420 50.000 0.00 0.00 0.00 4.93
27 28 2.289565 CTTATCCCCTCCAAACTTCGC 58.710 52.381 0.00 0.00 0.00 4.70
28 29 3.055385 TCACTTATCCCCTCCAAACTTCG 60.055 47.826 0.00 0.00 0.00 3.79
29 30 4.262617 GTCACTTATCCCCTCCAAACTTC 58.737 47.826 0.00 0.00 0.00 3.01
30 31 3.010250 GGTCACTTATCCCCTCCAAACTT 59.990 47.826 0.00 0.00 0.00 2.66
31 32 2.576648 GGTCACTTATCCCCTCCAAACT 59.423 50.000 0.00 0.00 0.00 2.66
32 33 2.576648 AGGTCACTTATCCCCTCCAAAC 59.423 50.000 0.00 0.00 0.00 2.93
33 34 2.929301 AGGTCACTTATCCCCTCCAAA 58.071 47.619 0.00 0.00 0.00 3.28
34 35 2.661176 AGGTCACTTATCCCCTCCAA 57.339 50.000 0.00 0.00 0.00 3.53
35 36 2.693074 GCTAGGTCACTTATCCCCTCCA 60.693 54.545 0.00 0.00 0.00 3.86
36 37 1.972075 GCTAGGTCACTTATCCCCTCC 59.028 57.143 0.00 0.00 0.00 4.30
37 38 2.630580 CTGCTAGGTCACTTATCCCCTC 59.369 54.545 0.00 0.00 0.00 4.30
38 39 2.683768 CTGCTAGGTCACTTATCCCCT 58.316 52.381 0.00 0.00 0.00 4.79
39 40 1.070914 GCTGCTAGGTCACTTATCCCC 59.929 57.143 0.00 0.00 0.00 4.81
40 41 1.070914 GGCTGCTAGGTCACTTATCCC 59.929 57.143 0.00 0.00 0.00 3.85
41 42 1.269831 CGGCTGCTAGGTCACTTATCC 60.270 57.143 0.00 0.00 0.00 2.59
42 43 1.870167 GCGGCTGCTAGGTCACTTATC 60.870 57.143 11.21 0.00 38.39 1.75
43 44 0.105039 GCGGCTGCTAGGTCACTTAT 59.895 55.000 11.21 0.00 38.39 1.73
44 45 1.254975 TGCGGCTGCTAGGTCACTTA 61.255 55.000 20.27 0.00 43.34 2.24
45 46 2.266055 GCGGCTGCTAGGTCACTT 59.734 61.111 11.21 0.00 38.39 3.16
46 47 2.997315 TGCGGCTGCTAGGTCACT 60.997 61.111 20.27 0.00 43.34 3.41
47 48 2.510238 CTGCGGCTGCTAGGTCAC 60.510 66.667 20.27 0.00 43.34 3.67
48 49 2.997315 ACTGCGGCTGCTAGGTCA 60.997 61.111 20.27 0.00 43.34 4.02
49 50 2.202810 GACTGCGGCTGCTAGGTC 60.203 66.667 20.27 18.72 43.34 3.85
50 51 2.997315 TGACTGCGGCTGCTAGGT 60.997 61.111 20.27 14.47 43.34 3.08
51 52 2.510238 GTGACTGCGGCTGCTAGG 60.510 66.667 20.27 11.28 43.34 3.02
52 53 1.357258 CTTGTGACTGCGGCTGCTAG 61.357 60.000 20.27 16.21 43.34 3.42
53 54 1.374631 CTTGTGACTGCGGCTGCTA 60.375 57.895 20.27 4.21 43.34 3.49
54 55 2.667536 CTTGTGACTGCGGCTGCT 60.668 61.111 20.27 0.00 43.34 4.24
55 56 2.666190 TCTTGTGACTGCGGCTGC 60.666 61.111 11.65 11.65 43.20 5.25
56 57 1.005748 TCTCTTGTGACTGCGGCTG 60.006 57.895 5.24 5.24 0.00 4.85
57 58 1.181741 TCTCTCTTGTGACTGCGGCT 61.182 55.000 0.00 0.00 0.00 5.52
58 59 0.319900 TTCTCTCTTGTGACTGCGGC 60.320 55.000 0.00 0.00 0.00 6.53
59 60 2.064762 CTTTCTCTCTTGTGACTGCGG 58.935 52.381 0.00 0.00 0.00 5.69
60 61 2.985809 CTCTTTCTCTCTTGTGACTGCG 59.014 50.000 0.00 0.00 0.00 5.18
61 62 4.250116 TCTCTTTCTCTCTTGTGACTGC 57.750 45.455 0.00 0.00 0.00 4.40
62 63 7.279758 AGTTTTTCTCTTTCTCTCTTGTGACTG 59.720 37.037 0.00 0.00 0.00 3.51
63 64 7.334858 AGTTTTTCTCTTTCTCTCTTGTGACT 58.665 34.615 0.00 0.00 0.00 3.41
64 65 7.546778 AGTTTTTCTCTTTCTCTCTTGTGAC 57.453 36.000 0.00 0.00 0.00 3.67
65 66 9.838339 ATTAGTTTTTCTCTTTCTCTCTTGTGA 57.162 29.630 0.00 0.00 0.00 3.58
67 68 9.838339 TGATTAGTTTTTCTCTTTCTCTCTTGT 57.162 29.630 0.00 0.00 0.00 3.16
69 70 9.500785 CCTGATTAGTTTTTCTCTTTCTCTCTT 57.499 33.333 0.00 0.00 0.00 2.85
70 71 8.100164 CCCTGATTAGTTTTTCTCTTTCTCTCT 58.900 37.037 0.00 0.00 0.00 3.10
71 72 7.335673 CCCCTGATTAGTTTTTCTCTTTCTCTC 59.664 40.741 0.00 0.00 0.00 3.20
72 73 7.017651 TCCCCTGATTAGTTTTTCTCTTTCTCT 59.982 37.037 0.00 0.00 0.00 3.10
73 74 7.119992 GTCCCCTGATTAGTTTTTCTCTTTCTC 59.880 40.741 0.00 0.00 0.00 2.87
74 75 6.943146 GTCCCCTGATTAGTTTTTCTCTTTCT 59.057 38.462 0.00 0.00 0.00 2.52
75 76 6.128254 CGTCCCCTGATTAGTTTTTCTCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
76 77 5.705905 CGTCCCCTGATTAGTTTTTCTCTTT 59.294 40.000 0.00 0.00 0.00 2.52
77 78 5.221864 ACGTCCCCTGATTAGTTTTTCTCTT 60.222 40.000 0.00 0.00 0.00 2.85
78 79 4.286291 ACGTCCCCTGATTAGTTTTTCTCT 59.714 41.667 0.00 0.00 0.00 3.10
79 80 4.576879 ACGTCCCCTGATTAGTTTTTCTC 58.423 43.478 0.00 0.00 0.00 2.87
80 81 4.635699 ACGTCCCCTGATTAGTTTTTCT 57.364 40.909 0.00 0.00 0.00 2.52
81 82 5.239963 TCAAACGTCCCCTGATTAGTTTTTC 59.760 40.000 0.00 0.00 30.56 2.29
82 83 5.134661 TCAAACGTCCCCTGATTAGTTTTT 58.865 37.500 0.00 0.00 30.56 1.94
83 84 4.721132 TCAAACGTCCCCTGATTAGTTTT 58.279 39.130 0.00 0.00 30.56 2.43
84 85 4.324267 CTCAAACGTCCCCTGATTAGTTT 58.676 43.478 0.00 0.00 32.82 2.66
85 86 3.307480 CCTCAAACGTCCCCTGATTAGTT 60.307 47.826 0.00 0.00 0.00 2.24
86 87 2.236395 CCTCAAACGTCCCCTGATTAGT 59.764 50.000 0.00 0.00 0.00 2.24
87 88 2.906354 CCTCAAACGTCCCCTGATTAG 58.094 52.381 0.00 0.00 0.00 1.73
88 89 1.065709 GCCTCAAACGTCCCCTGATTA 60.066 52.381 0.00 0.00 0.00 1.75
89 90 0.322546 GCCTCAAACGTCCCCTGATT 60.323 55.000 0.00 0.00 0.00 2.57
90 91 1.201429 AGCCTCAAACGTCCCCTGAT 61.201 55.000 0.00 0.00 0.00 2.90
91 92 1.827399 GAGCCTCAAACGTCCCCTGA 61.827 60.000 0.00 0.00 0.00 3.86
92 93 1.376037 GAGCCTCAAACGTCCCCTG 60.376 63.158 0.00 0.00 0.00 4.45
93 94 1.201429 ATGAGCCTCAAACGTCCCCT 61.201 55.000 0.00 0.00 0.00 4.79
94 95 0.744771 GATGAGCCTCAAACGTCCCC 60.745 60.000 0.00 0.00 0.00 4.81
95 96 0.250513 AGATGAGCCTCAAACGTCCC 59.749 55.000 0.00 0.00 0.00 4.46
96 97 2.100605 AAGATGAGCCTCAAACGTCC 57.899 50.000 0.00 0.00 0.00 4.79
97 98 3.619038 CCTAAAGATGAGCCTCAAACGTC 59.381 47.826 0.00 0.00 0.00 4.34
98 99 3.260884 TCCTAAAGATGAGCCTCAAACGT 59.739 43.478 0.00 0.00 0.00 3.99
99 100 3.861840 TCCTAAAGATGAGCCTCAAACG 58.138 45.455 0.00 0.00 0.00 3.60
100 101 7.275920 TCTATTCCTAAAGATGAGCCTCAAAC 58.724 38.462 0.00 0.00 0.00 2.93
101 102 7.437713 TCTATTCCTAAAGATGAGCCTCAAA 57.562 36.000 0.00 0.00 0.00 2.69
102 103 7.437713 TTCTATTCCTAAAGATGAGCCTCAA 57.562 36.000 0.00 0.00 0.00 3.02
103 104 7.275920 GTTTCTATTCCTAAAGATGAGCCTCA 58.724 38.462 0.00 0.00 0.00 3.86
104 105 6.708502 GGTTTCTATTCCTAAAGATGAGCCTC 59.291 42.308 0.00 0.00 0.00 4.70
105 106 6.409810 GGGTTTCTATTCCTAAAGATGAGCCT 60.410 42.308 0.00 0.00 0.00 4.58
106 107 5.765677 GGGTTTCTATTCCTAAAGATGAGCC 59.234 44.000 0.00 0.00 0.00 4.70
107 108 6.596621 AGGGTTTCTATTCCTAAAGATGAGC 58.403 40.000 0.00 0.00 0.00 4.26
109 110 9.901172 GTTAAGGGTTTCTATTCCTAAAGATGA 57.099 33.333 0.00 0.00 0.00 2.92
110 111 9.681062 TGTTAAGGGTTTCTATTCCTAAAGATG 57.319 33.333 0.00 0.00 0.00 2.90
112 113 9.734984 CTTGTTAAGGGTTTCTATTCCTAAAGA 57.265 33.333 0.00 0.00 0.00 2.52
113 114 9.516546 ACTTGTTAAGGGTTTCTATTCCTAAAG 57.483 33.333 0.00 0.00 0.00 1.85
114 115 9.511272 GACTTGTTAAGGGTTTCTATTCCTAAA 57.489 33.333 0.00 0.00 0.00 1.85
115 116 8.662255 TGACTTGTTAAGGGTTTCTATTCCTAA 58.338 33.333 0.00 0.00 0.00 2.69
116 117 8.209802 TGACTTGTTAAGGGTTTCTATTCCTA 57.790 34.615 0.00 0.00 0.00 2.94
117 118 7.086685 TGACTTGTTAAGGGTTTCTATTCCT 57.913 36.000 0.00 0.00 0.00 3.36
118 119 7.754851 TTGACTTGTTAAGGGTTTCTATTCC 57.245 36.000 0.00 0.00 0.00 3.01
121 122 9.981114 CATTTTTGACTTGTTAAGGGTTTCTAT 57.019 29.630 0.00 0.00 0.00 1.98
122 123 9.191479 TCATTTTTGACTTGTTAAGGGTTTCTA 57.809 29.630 0.00 0.00 0.00 2.10
123 124 8.073467 TCATTTTTGACTTGTTAAGGGTTTCT 57.927 30.769 0.00 0.00 0.00 2.52
124 125 8.710835 TTCATTTTTGACTTGTTAAGGGTTTC 57.289 30.769 0.00 0.00 0.00 2.78
125 126 8.536175 TCTTCATTTTTGACTTGTTAAGGGTTT 58.464 29.630 0.00 0.00 0.00 3.27
126 127 8.073467 TCTTCATTTTTGACTTGTTAAGGGTT 57.927 30.769 0.00 0.00 0.00 4.11
127 128 7.654022 TCTTCATTTTTGACTTGTTAAGGGT 57.346 32.000 0.00 0.00 0.00 4.34
128 129 8.197439 ACTTCTTCATTTTTGACTTGTTAAGGG 58.803 33.333 0.00 0.00 0.00 3.95
129 130 9.586435 AACTTCTTCATTTTTGACTTGTTAAGG 57.414 29.630 0.00 0.00 0.00 2.69
133 134 9.921637 TGTAAACTTCTTCATTTTTGACTTGTT 57.078 25.926 0.00 0.00 0.00 2.83
134 135 9.921637 TTGTAAACTTCTTCATTTTTGACTTGT 57.078 25.926 0.00 0.00 0.00 3.16
137 138 9.586435 CCTTTGTAAACTTCTTCATTTTTGACT 57.414 29.630 0.00 0.00 0.00 3.41
138 139 9.581099 TCCTTTGTAAACTTCTTCATTTTTGAC 57.419 29.630 0.00 0.00 0.00 3.18
139 140 9.801873 CTCCTTTGTAAACTTCTTCATTTTTGA 57.198 29.630 0.00 0.00 0.00 2.69
140 141 9.801873 TCTCCTTTGTAAACTTCTTCATTTTTG 57.198 29.630 0.00 0.00 0.00 2.44
143 144 8.797438 GGATCTCCTTTGTAAACTTCTTCATTT 58.203 33.333 0.00 0.00 0.00 2.32
144 145 7.394641 GGGATCTCCTTTGTAAACTTCTTCATT 59.605 37.037 0.00 0.00 35.95 2.57
145 146 6.887002 GGGATCTCCTTTGTAAACTTCTTCAT 59.113 38.462 0.00 0.00 35.95 2.57
146 147 6.183361 TGGGATCTCCTTTGTAAACTTCTTCA 60.183 38.462 0.00 0.00 36.20 3.02
147 148 6.238648 TGGGATCTCCTTTGTAAACTTCTTC 58.761 40.000 0.00 0.00 36.20 2.87
148 149 6.200878 TGGGATCTCCTTTGTAAACTTCTT 57.799 37.500 0.00 0.00 36.20 2.52
149 150 5.843019 TGGGATCTCCTTTGTAAACTTCT 57.157 39.130 0.00 0.00 36.20 2.85
150 151 6.894339 TTTGGGATCTCCTTTGTAAACTTC 57.106 37.500 0.00 0.00 36.20 3.01
151 152 7.508977 TGAATTTGGGATCTCCTTTGTAAACTT 59.491 33.333 0.00 0.00 36.20 2.66
152 153 7.010160 TGAATTTGGGATCTCCTTTGTAAACT 58.990 34.615 0.00 0.00 36.20 2.66
153 154 7.227049 TGAATTTGGGATCTCCTTTGTAAAC 57.773 36.000 0.00 0.00 36.20 2.01
154 155 9.713684 ATATGAATTTGGGATCTCCTTTGTAAA 57.286 29.630 0.00 0.00 36.20 2.01
155 156 9.135189 CATATGAATTTGGGATCTCCTTTGTAA 57.865 33.333 0.00 0.00 36.20 2.41
156 157 8.501904 TCATATGAATTTGGGATCTCCTTTGTA 58.498 33.333 1.98 0.00 36.20 2.41
157 158 7.356680 TCATATGAATTTGGGATCTCCTTTGT 58.643 34.615 1.98 0.00 36.20 2.83
158 159 7.828508 TCATATGAATTTGGGATCTCCTTTG 57.171 36.000 1.98 0.00 36.20 2.77
159 160 8.843308 TTTCATATGAATTTGGGATCTCCTTT 57.157 30.769 18.61 0.00 33.29 3.11
160 161 8.843308 TTTTCATATGAATTTGGGATCTCCTT 57.157 30.769 18.61 0.00 33.29 3.36
165 166 9.374838 GGCATATTTTCATATGAATTTGGGATC 57.625 33.333 18.61 5.13 43.68 3.36
166 167 8.882282 TGGCATATTTTCATATGAATTTGGGAT 58.118 29.630 18.61 8.84 43.68 3.85
167 168 8.260099 TGGCATATTTTCATATGAATTTGGGA 57.740 30.769 18.61 0.04 43.68 4.37
168 169 8.905660 TTGGCATATTTTCATATGAATTTGGG 57.094 30.769 18.61 10.00 43.68 4.12
169 170 8.995220 CCTTGGCATATTTTCATATGAATTTGG 58.005 33.333 18.61 9.06 43.68 3.28
170 171 8.995220 CCCTTGGCATATTTTCATATGAATTTG 58.005 33.333 18.61 13.76 43.68 2.32
171 172 8.936787 TCCCTTGGCATATTTTCATATGAATTT 58.063 29.630 18.61 11.48 43.68 1.82
172 173 8.495160 TCCCTTGGCATATTTTCATATGAATT 57.505 30.769 18.61 11.81 43.68 2.17
173 174 8.495160 TTCCCTTGGCATATTTTCATATGAAT 57.505 30.769 18.61 7.80 43.68 2.57
174 175 7.784073 TCTTCCCTTGGCATATTTTCATATGAA 59.216 33.333 14.23 14.23 43.68 2.57
175 176 7.231317 GTCTTCCCTTGGCATATTTTCATATGA 59.769 37.037 0.00 0.00 43.68 2.15
176 177 7.232127 AGTCTTCCCTTGGCATATTTTCATATG 59.768 37.037 0.00 0.00 43.77 1.78
177 178 7.300658 AGTCTTCCCTTGGCATATTTTCATAT 58.699 34.615 0.00 0.00 0.00 1.78
178 179 6.672593 AGTCTTCCCTTGGCATATTTTCATA 58.327 36.000 0.00 0.00 0.00 2.15
179 180 5.522641 AGTCTTCCCTTGGCATATTTTCAT 58.477 37.500 0.00 0.00 0.00 2.57
180 181 4.934356 AGTCTTCCCTTGGCATATTTTCA 58.066 39.130 0.00 0.00 0.00 2.69
181 182 5.009110 GCTAGTCTTCCCTTGGCATATTTTC 59.991 44.000 0.00 0.00 0.00 2.29
182 183 4.889995 GCTAGTCTTCCCTTGGCATATTTT 59.110 41.667 0.00 0.00 0.00 1.82
183 184 4.079787 TGCTAGTCTTCCCTTGGCATATTT 60.080 41.667 0.00 0.00 0.00 1.40
184 185 3.459598 TGCTAGTCTTCCCTTGGCATATT 59.540 43.478 0.00 0.00 0.00 1.28
185 186 3.048600 TGCTAGTCTTCCCTTGGCATAT 58.951 45.455 0.00 0.00 0.00 1.78
186 187 2.435805 CTGCTAGTCTTCCCTTGGCATA 59.564 50.000 0.00 0.00 0.00 3.14
187 188 1.211457 CTGCTAGTCTTCCCTTGGCAT 59.789 52.381 0.00 0.00 0.00 4.40
188 189 0.615331 CTGCTAGTCTTCCCTTGGCA 59.385 55.000 0.00 0.00 0.00 4.92
189 190 0.107459 CCTGCTAGTCTTCCCTTGGC 60.107 60.000 0.00 0.00 0.00 4.52
190 191 1.484240 CTCCTGCTAGTCTTCCCTTGG 59.516 57.143 0.00 0.00 0.00 3.61
191 192 2.167487 GTCTCCTGCTAGTCTTCCCTTG 59.833 54.545 0.00 0.00 0.00 3.61
192 193 2.043801 AGTCTCCTGCTAGTCTTCCCTT 59.956 50.000 0.00 0.00 0.00 3.95
193 194 1.643811 AGTCTCCTGCTAGTCTTCCCT 59.356 52.381 0.00 0.00 0.00 4.20
194 195 1.754226 CAGTCTCCTGCTAGTCTTCCC 59.246 57.143 0.00 0.00 0.00 3.97
195 196 1.754226 CCAGTCTCCTGCTAGTCTTCC 59.246 57.143 0.00 0.00 37.38 3.46
196 197 1.136110 GCCAGTCTCCTGCTAGTCTTC 59.864 57.143 0.00 0.00 37.38 2.87
197 198 1.190643 GCCAGTCTCCTGCTAGTCTT 58.809 55.000 0.00 0.00 37.38 3.01
198 199 0.686112 GGCCAGTCTCCTGCTAGTCT 60.686 60.000 0.00 0.00 37.38 3.24
199 200 0.972983 TGGCCAGTCTCCTGCTAGTC 60.973 60.000 0.00 0.00 37.38 2.59
200 201 1.079256 TGGCCAGTCTCCTGCTAGT 59.921 57.895 0.00 0.00 37.38 2.57
201 202 1.260538 TGTGGCCAGTCTCCTGCTAG 61.261 60.000 5.11 0.00 37.38 3.42
202 203 0.835971 TTGTGGCCAGTCTCCTGCTA 60.836 55.000 5.11 0.00 37.38 3.49
203 204 1.708993 TTTGTGGCCAGTCTCCTGCT 61.709 55.000 5.11 0.00 37.38 4.24
204 205 0.823356 TTTTGTGGCCAGTCTCCTGC 60.823 55.000 5.11 0.00 37.38 4.85
205 206 1.242076 CTTTTGTGGCCAGTCTCCTG 58.758 55.000 5.11 0.00 38.50 3.86
206 207 0.538287 GCTTTTGTGGCCAGTCTCCT 60.538 55.000 5.11 0.00 0.00 3.69
207 208 0.823356 TGCTTTTGTGGCCAGTCTCC 60.823 55.000 5.11 0.00 0.00 3.71
208 209 1.068055 CATGCTTTTGTGGCCAGTCTC 60.068 52.381 5.11 0.00 0.00 3.36
209 210 0.963962 CATGCTTTTGTGGCCAGTCT 59.036 50.000 5.11 0.00 0.00 3.24
210 211 0.961019 TCATGCTTTTGTGGCCAGTC 59.039 50.000 5.11 0.00 0.00 3.51
211 212 1.069049 GTTCATGCTTTTGTGGCCAGT 59.931 47.619 5.11 0.00 0.00 4.00
212 213 1.068895 TGTTCATGCTTTTGTGGCCAG 59.931 47.619 5.11 0.00 0.00 4.85
215 216 1.866601 GGTTGTTCATGCTTTTGTGGC 59.133 47.619 0.00 0.00 0.00 5.01
221 222 2.964464 TGATGGTGGTTGTTCATGCTTT 59.036 40.909 0.00 0.00 0.00 3.51
225 226 2.921912 GCGTTGATGGTGGTTGTTCATG 60.922 50.000 0.00 0.00 0.00 3.07
240 241 2.969628 ACCAAAATTTGTGGCGTTGA 57.030 40.000 5.46 0.00 40.02 3.18
249 250 4.866486 GCCTCATTCTGCTACCAAAATTTG 59.134 41.667 0.00 0.00 0.00 2.32
253 254 2.083774 CGCCTCATTCTGCTACCAAAA 58.916 47.619 0.00 0.00 0.00 2.44
257 258 0.878086 GAGCGCCTCATTCTGCTACC 60.878 60.000 2.29 0.00 37.91 3.18
298 299 6.262056 AGGAAGAGGAGGTTTGTTCTAAAA 57.738 37.500 0.00 0.00 0.00 1.52
334 335 9.743057 AATCATTTTTGAAACTGTACAAATCGA 57.257 25.926 11.69 0.00 36.21 3.59
335 336 9.782028 CAATCATTTTTGAAACTGTACAAATCG 57.218 29.630 11.69 0.00 36.21 3.34
400 402 8.615211 ACTTTTCTTTTTGGAATTGATTGAAGC 58.385 29.630 0.00 0.00 0.00 3.86
415 417 8.244113 ACTGATTGAAGTCGAACTTTTCTTTTT 58.756 29.630 0.00 0.00 38.80 1.94
448 451 2.758770 TTCGAACTCCGTCGGCAAGG 62.759 60.000 6.34 0.00 41.43 3.61
453 456 2.181021 CCCTTCGAACTCCGTCGG 59.819 66.667 4.39 4.39 41.43 4.79
456 459 0.613853 TCATCCCCTTCGAACTCCGT 60.614 55.000 0.00 0.00 39.75 4.69
480 483 1.879737 TTGCAACTACGGCGGCTAGA 61.880 55.000 13.24 0.00 0.00 2.43
505 508 3.840124 AACGTCTCCTGGTTTCTCTTT 57.160 42.857 0.00 0.00 0.00 2.52
523 530 0.603569 TCCTGAGACGAGCCTCAAAC 59.396 55.000 0.00 0.00 42.05 2.93
546 556 9.238368 CTCCATTGTTAATTTGGTTAAGGTCTA 57.762 33.333 0.00 0.00 33.11 2.59
548 558 8.117813 TCTCCATTGTTAATTTGGTTAAGGTC 57.882 34.615 0.00 0.00 33.11 3.85
564 575 7.824779 GTCTCCATAAGTAAACTTCTCCATTGT 59.175 37.037 0.00 0.00 37.40 2.71
570 581 7.597743 TCAAACGTCTCCATAAGTAAACTTCTC 59.402 37.037 0.00 0.00 37.40 2.87
581 592 2.416836 CGAGCCTCAAACGTCTCCATAA 60.417 50.000 0.00 0.00 0.00 1.90
582 593 1.134367 CGAGCCTCAAACGTCTCCATA 59.866 52.381 0.00 0.00 0.00 2.74
584 595 1.289066 CGAGCCTCAAACGTCTCCA 59.711 57.895 0.00 0.00 0.00 3.86
586 597 4.968197 ACGAGCCTCAAACGTCTC 57.032 55.556 0.00 0.00 35.33 3.36
589 600 0.039074 CTGAGACGAGCCTCAAACGT 60.039 55.000 0.00 0.00 42.05 3.99
591 602 0.603569 TCCTGAGACGAGCCTCAAAC 59.396 55.000 0.00 0.00 42.05 2.93
592 603 1.000955 GTTCCTGAGACGAGCCTCAAA 59.999 52.381 0.00 0.00 42.05 2.69
593 604 0.603569 GTTCCTGAGACGAGCCTCAA 59.396 55.000 0.00 0.00 42.05 3.02
748 1430 1.871039 CCAACTCGTGTGGTTTGTAGG 59.129 52.381 0.00 0.00 0.00 3.18
749 1431 1.871039 CCCAACTCGTGTGGTTTGTAG 59.129 52.381 0.00 0.00 0.00 2.74
751 1433 1.381165 GCCCAACTCGTGTGGTTTGT 61.381 55.000 0.00 0.00 0.00 2.83
850 1535 2.023673 ACTGAGGAGAAGAGATGCGAG 58.976 52.381 0.00 0.00 0.00 5.03
851 1536 2.020720 GACTGAGGAGAAGAGATGCGA 58.979 52.381 0.00 0.00 0.00 5.10
855 1540 1.398692 GGCGACTGAGGAGAAGAGAT 58.601 55.000 0.00 0.00 0.00 2.75
929 1625 0.326238 AGCTTATCGGGGAGGTGGAA 60.326 55.000 0.00 0.00 0.00 3.53
930 1626 0.759436 GAGCTTATCGGGGAGGTGGA 60.759 60.000 0.00 0.00 0.00 4.02
963 1673 3.792185 GAATCGGATGGGGTGGGGC 62.792 68.421 0.00 0.00 0.00 5.80
967 1677 1.149174 CTGGGAATCGGATGGGGTG 59.851 63.158 0.00 0.00 0.00 4.61
968 1678 2.757124 GCTGGGAATCGGATGGGGT 61.757 63.158 0.00 0.00 0.00 4.95
974 1684 3.154473 CGGGAGCTGGGAATCGGA 61.154 66.667 0.00 0.00 0.00 4.55
997 1707 2.279120 GAGGGCTCTCGACATGCG 60.279 66.667 0.00 0.00 42.69 4.73
1029 1739 2.002977 CAGCCTCAGGAATGGGGGA 61.003 63.158 0.00 0.00 0.00 4.81
1194 1904 1.608717 CCTCGCTGGGCTTGTAGTCT 61.609 60.000 0.00 0.00 0.00 3.24
1419 2129 3.493699 CGTAGTTGAAGGTCTTGGTGGAA 60.494 47.826 0.00 0.00 0.00 3.53
1463 2173 2.095978 AACAACCTCGTACTGCCGCT 62.096 55.000 0.00 0.00 0.00 5.52
1581 2291 1.449246 CAGCAGAGAAAGGGCCTCG 60.449 63.158 6.46 0.00 35.88 4.63
1593 2303 1.044790 TCGGCATCTCATCCAGCAGA 61.045 55.000 0.00 0.00 0.00 4.26
1674 2384 1.690219 ATGCCTCATCCACCCGACTC 61.690 60.000 0.00 0.00 0.00 3.36
1675 2385 1.274703 AATGCCTCATCCACCCGACT 61.275 55.000 0.00 0.00 0.00 4.18
1696 2406 1.085091 CGCATTCTCTCAAGCAGCTT 58.915 50.000 0.21 0.21 0.00 3.74
1702 2412 1.664659 CTCCTTGCGCATTCTCTCAAG 59.335 52.381 12.75 2.00 36.57 3.02
1777 2487 1.986413 CAGAGGTCACCCTTCCCTG 59.014 63.158 0.00 0.00 42.86 4.45
1821 2531 0.762082 TAGGATGGCAGCCCTCAGAG 60.762 60.000 19.93 0.00 34.11 3.35
1851 2561 3.397482 GCCATCAAGCAGTACCTGATAG 58.603 50.000 0.00 0.00 32.44 2.08
1881 2591 2.554032 CGCCTCCACAAACTTCTTTGAT 59.446 45.455 0.27 0.00 39.43 2.57
1941 2651 4.463186 AGCTTGTACGATGAGAAACTAGGT 59.537 41.667 0.00 0.00 0.00 3.08
2037 2747 1.173913 CCATCCGAGGAACAAAACCC 58.826 55.000 0.00 0.00 0.00 4.11
2095 2805 3.282021 ACCACTGGCATGAACATACATC 58.718 45.455 0.00 0.00 0.00 3.06
2197 2914 5.263599 TCCAACTTCAATATGCAAGTCCAT 58.736 37.500 0.00 0.00 31.38 3.41
2217 2934 9.600432 CTTAATCCCCATAAGGAAAAATATCCA 57.400 33.333 0.00 0.00 42.27 3.41
2358 3077 3.039202 CTGTGGATTGAACGCGGGC 62.039 63.158 12.47 1.50 0.00 6.13
2368 3087 1.302907 ATGAGCCTTCCCTGTGGATT 58.697 50.000 0.00 0.00 41.40 3.01
2371 3090 1.821136 GAAAATGAGCCTTCCCTGTGG 59.179 52.381 0.00 0.00 0.00 4.17
2403 3122 1.056660 GTCCCTCCTTGAACTGTCCA 58.943 55.000 0.00 0.00 0.00 4.02
2428 3981 5.178067 CGTATATAAACGTTGCCTAAAGGGG 59.822 44.000 0.00 0.00 38.07 4.79
2566 4119 8.647143 AAATTGTTGGATTTGAGTTGTAACAG 57.353 30.769 0.00 0.00 0.00 3.16
2943 4514 6.247676 GGTTAATGTTTACTCCAAGGGGTTA 58.752 40.000 0.00 0.00 34.93 2.85
2944 4515 5.081728 GGTTAATGTTTACTCCAAGGGGTT 58.918 41.667 0.00 0.00 34.93 4.11
2945 4516 4.509663 GGGTTAATGTTTACTCCAAGGGGT 60.510 45.833 0.00 0.00 34.93 4.95
2946 4517 4.021229 GGGTTAATGTTTACTCCAAGGGG 58.979 47.826 0.00 0.00 0.00 4.79
2947 4518 4.021229 GGGGTTAATGTTTACTCCAAGGG 58.979 47.826 0.00 0.00 34.90 3.95
2948 4519 4.930696 AGGGGTTAATGTTTACTCCAAGG 58.069 43.478 3.88 0.00 37.37 3.61
2949 4520 6.911250 AAAGGGGTTAATGTTTACTCCAAG 57.089 37.500 3.88 0.00 37.37 3.61
2950 4521 7.528675 AGTAAAGGGGTTAATGTTTACTCCAA 58.471 34.615 3.88 0.00 40.17 3.53
2951 4522 7.093965 AGTAAAGGGGTTAATGTTTACTCCA 57.906 36.000 3.88 0.00 40.17 3.86
2952 4523 7.621428 GAGTAAAGGGGTTAATGTTTACTCC 57.379 40.000 17.34 0.00 46.98 3.85
2954 4525 8.222637 ACTTGAGTAAAGGGGTTAATGTTTACT 58.777 33.333 6.13 6.13 44.54 2.24
2955 4526 8.400184 ACTTGAGTAAAGGGGTTAATGTTTAC 57.600 34.615 0.00 0.00 40.51 2.01
2956 4527 8.852135 CAACTTGAGTAAAGGGGTTAATGTTTA 58.148 33.333 0.00 0.00 40.51 2.01
2957 4528 7.343574 ACAACTTGAGTAAAGGGGTTAATGTTT 59.656 33.333 0.00 0.00 40.51 2.83
2958 4529 6.837048 ACAACTTGAGTAAAGGGGTTAATGTT 59.163 34.615 0.00 0.00 40.51 2.71
2959 4530 6.370453 ACAACTTGAGTAAAGGGGTTAATGT 58.630 36.000 0.00 0.00 40.51 2.71
2960 4531 6.894339 ACAACTTGAGTAAAGGGGTTAATG 57.106 37.500 0.00 0.00 40.51 1.90
2961 4532 8.387813 TGATACAACTTGAGTAAAGGGGTTAAT 58.612 33.333 0.00 0.00 40.51 1.40
2962 4533 7.747690 TGATACAACTTGAGTAAAGGGGTTAA 58.252 34.615 0.00 0.00 40.51 2.01
3172 4746 6.841119 TGTACTTTGATGTACACAATGATGC 58.159 36.000 20.44 13.79 45.16 3.91
3351 4929 8.911918 TCAAGGCTAATAACAAGACAAGTTAA 57.088 30.769 0.00 0.00 35.33 2.01
3367 4945 6.207810 ACGGTAAAATTTGTCATCAAGGCTAA 59.792 34.615 0.00 0.00 34.88 3.09
3406 4985 3.181476 ACGGTGAAATTGCTCTGCTTTTT 60.181 39.130 0.00 0.00 0.00 1.94
3414 4993 1.234821 TGGTGACGGTGAAATTGCTC 58.765 50.000 0.00 0.00 0.00 4.26
3444 5023 3.311322 CGGCTAATTTATTCAGGTGCGAA 59.689 43.478 0.00 0.00 0.00 4.70
3447 5026 5.054477 TCTACGGCTAATTTATTCAGGTGC 58.946 41.667 0.00 0.00 0.00 5.01
3498 5077 4.049186 ACGCGCAAATATCAGTTACTAGG 58.951 43.478 5.73 0.00 0.00 3.02
3661 5240 7.621832 TTCTTCTGAATTTGTTACATTTGCG 57.378 32.000 0.00 0.00 0.00 4.85
3662 5241 8.006027 GCTTTCTTCTGAATTTGTTACATTTGC 58.994 33.333 0.00 0.00 31.56 3.68
3663 5242 8.209869 CGCTTTCTTCTGAATTTGTTACATTTG 58.790 33.333 0.00 0.00 31.56 2.32
3708 5301 3.181448 ACCCCCGAATAATTAGCGAATGT 60.181 43.478 10.93 3.73 0.00 2.71
3724 5317 1.152610 TGCCTAGCTAGTACCCCCG 60.153 63.158 19.31 3.46 0.00 5.73
3729 5322 5.532664 AATTGGTAGTGCCTAGCTAGTAC 57.467 43.478 19.31 16.52 35.72 2.73
3760 5355 4.144297 TCTGGAATGGTTCTTCCTTGTTG 58.856 43.478 4.63 0.00 44.27 3.33
3766 5361 8.753497 AATAACTAATCTGGAATGGTTCTTCC 57.247 34.615 0.00 0.00 44.23 3.46
3786 5381 4.102054 TGGCTAGCTAGTACCCCAAATAAC 59.898 45.833 21.62 0.50 0.00 1.89
3837 5432 7.783406 CGACACGTAATTTAGAATGATTCTTCG 59.217 37.037 13.54 8.37 41.14 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.