Multiple sequence alignment - TraesCS2D01G460200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G460200 chr2D 100.000 3583 0 0 1 3583 566982466 566978884 0.000000e+00 6617
1 TraesCS2D01G460200 chr2D 92.608 744 32 7 1875 2596 566836050 566835308 0.000000e+00 1048
2 TraesCS2D01G460200 chr2D 94.454 595 27 3 2995 3583 316717625 316717031 0.000000e+00 911
3 TraesCS2D01G460200 chr2D 93.970 597 28 4 2995 3583 399006195 399005599 0.000000e+00 896
4 TraesCS2D01G460200 chr2D 93.792 596 30 4 2995 3583 199696274 199695679 0.000000e+00 889
5 TraesCS2D01G460200 chr2D 86.714 700 58 20 463 1139 566838281 566837594 0.000000e+00 745
6 TraesCS2D01G460200 chr2D 99.408 169 1 0 1265 1433 12376957 12377125 1.250000e-79 307
7 TraesCS2D01G460200 chr2D 89.005 191 20 1 2797 2986 192283471 192283661 5.980000e-58 235
8 TraesCS2D01G460200 chr2D 80.102 196 36 3 2799 2993 632092302 632092495 3.730000e-30 143
9 TraesCS2D01G460200 chr2A 94.718 1382 60 7 1428 2800 706742522 706741145 0.000000e+00 2135
10 TraesCS2D01G460200 chr2A 92.118 812 31 15 480 1267 706743323 706742521 0.000000e+00 1114
11 TraesCS2D01G460200 chr2A 91.398 744 41 7 1875 2596 706644620 706643878 0.000000e+00 998
12 TraesCS2D01G460200 chr2A 86.744 694 58 19 467 1139 706645674 706644994 0.000000e+00 741
13 TraesCS2D01G460200 chr2A 84.144 473 48 16 1 451 706743790 706743323 1.980000e-117 433
14 TraesCS2D01G460200 chr2A 88.776 196 21 1 2796 2990 679490499 679490304 4.620000e-59 239
15 TraesCS2D01G460200 chr2B 94.207 1381 58 14 1428 2800 679886389 679885023 0.000000e+00 2087
16 TraesCS2D01G460200 chr2B 91.637 849 45 15 437 1267 679887228 679886388 0.000000e+00 1151
17 TraesCS2D01G460200 chr2B 92.339 744 33 8 1875 2596 679816094 679815353 0.000000e+00 1037
18 TraesCS2D01G460200 chr2B 86.305 701 59 21 463 1139 679819527 679818840 0.000000e+00 728
19 TraesCS2D01G460200 chr2B 86.946 429 33 5 1 409 679887652 679887227 9.060000e-126 460
20 TraesCS2D01G460200 chr6D 94.595 592 29 1 2995 3583 438698507 438697916 0.000000e+00 913
21 TraesCS2D01G460200 chr6D 94.247 591 29 2 2995 3580 154744892 154745482 0.000000e+00 898
22 TraesCS2D01G460200 chr3B 94.444 594 28 2 2995 3583 203521207 203521800 0.000000e+00 909
23 TraesCS2D01G460200 chr4B 94.088 592 32 1 2995 3583 420460027 420460618 0.000000e+00 896
24 TraesCS2D01G460200 chr4D 93.960 596 29 4 2995 3583 84091272 84091867 0.000000e+00 894
25 TraesCS2D01G460200 chr4D 99.405 168 1 0 1264 1431 151981701 151981868 4.490000e-79 305
26 TraesCS2D01G460200 chr4D 98.266 173 3 0 1265 1437 509819041 509818869 1.620000e-78 303
27 TraesCS2D01G460200 chr4D 95.161 186 7 2 1264 1448 347513861 347513677 3.500000e-75 292
28 TraesCS2D01G460200 chr4D 94.241 191 9 2 1246 1434 95133861 95133671 1.260000e-74 291
29 TraesCS2D01G460200 chr3A 93.919 592 31 2 2995 3583 365935018 365934429 0.000000e+00 889
30 TraesCS2D01G460200 chr7D 99.412 170 1 0 1264 1433 204448601 204448432 3.470000e-80 309
31 TraesCS2D01G460200 chrUn 99.405 168 1 0 1266 1433 131947973 131947806 4.490000e-79 305
32 TraesCS2D01G460200 chrUn 85.864 191 25 2 2797 2985 44242908 44243098 6.070000e-48 202
33 TraesCS2D01G460200 chrUn 81.283 187 30 5 2799 2984 376482612 376482794 2.880000e-31 147
34 TraesCS2D01G460200 chr3D 98.837 172 1 1 1265 1435 402850632 402850803 4.490000e-79 305
35 TraesCS2D01G460200 chr5D 96.154 182 5 2 1266 1446 135648252 135648432 2.700000e-76 296
36 TraesCS2D01G460200 chr5D 90.854 164 15 0 2830 2993 563410513 563410350 1.670000e-53 220
37 TraesCS2D01G460200 chr5D 83.077 195 28 5 2799 2993 22865086 22865275 4.760000e-39 172
38 TraesCS2D01G460200 chr7A 82.828 198 32 2 2797 2993 105644149 105644345 3.680000e-40 176
39 TraesCS2D01G460200 chr5B 82.741 197 30 4 2799 2993 115652049 115651855 4.760000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G460200 chr2D 566978884 566982466 3582 True 6617.000000 6617 100.000000 1 3583 1 chr2D.!!$R4 3582
1 TraesCS2D01G460200 chr2D 316717031 316717625 594 True 911.000000 911 94.454000 2995 3583 1 chr2D.!!$R2 588
2 TraesCS2D01G460200 chr2D 566835308 566838281 2973 True 896.500000 1048 89.661000 463 2596 2 chr2D.!!$R5 2133
3 TraesCS2D01G460200 chr2D 399005599 399006195 596 True 896.000000 896 93.970000 2995 3583 1 chr2D.!!$R3 588
4 TraesCS2D01G460200 chr2D 199695679 199696274 595 True 889.000000 889 93.792000 2995 3583 1 chr2D.!!$R1 588
5 TraesCS2D01G460200 chr2A 706741145 706743790 2645 True 1227.333333 2135 90.326667 1 2800 3 chr2A.!!$R3 2799
6 TraesCS2D01G460200 chr2A 706643878 706645674 1796 True 869.500000 998 89.071000 467 2596 2 chr2A.!!$R2 2129
7 TraesCS2D01G460200 chr2B 679885023 679887652 2629 True 1232.666667 2087 90.930000 1 2800 3 chr2B.!!$R2 2799
8 TraesCS2D01G460200 chr2B 679815353 679819527 4174 True 882.500000 1037 89.322000 463 2596 2 chr2B.!!$R1 2133
9 TraesCS2D01G460200 chr6D 438697916 438698507 591 True 913.000000 913 94.595000 2995 3583 1 chr6D.!!$R1 588
10 TraesCS2D01G460200 chr6D 154744892 154745482 590 False 898.000000 898 94.247000 2995 3580 1 chr6D.!!$F1 585
11 TraesCS2D01G460200 chr3B 203521207 203521800 593 False 909.000000 909 94.444000 2995 3583 1 chr3B.!!$F1 588
12 TraesCS2D01G460200 chr4B 420460027 420460618 591 False 896.000000 896 94.088000 2995 3583 1 chr4B.!!$F1 588
13 TraesCS2D01G460200 chr4D 84091272 84091867 595 False 894.000000 894 93.960000 2995 3583 1 chr4D.!!$F1 588
14 TraesCS2D01G460200 chr3A 365934429 365935018 589 True 889.000000 889 93.919000 2995 3583 1 chr3A.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 591 0.035881 TGGAACTCCAGCTTCTGCAG 59.964 55.0 7.63 7.63 42.01 4.41 F
877 935 2.253403 CTACTCCCCGGCCACCTTTC 62.253 65.0 2.24 0.00 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1543 1.009829 GCATGTAGCTTCCGTTCCAG 58.990 55.0 0.00 0.0 41.15 3.86 R
2870 5756 0.039035 CCTAGATCGCTCCTAGGGCT 59.961 60.0 9.46 0.0 45.98 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.355381 TCATTGGTCTCTGGGTGCAAT 59.645 47.619 0.00 0.00 0.00 3.56
38 39 1.699083 TCTCTGGGTGCAATCAGTTGA 59.301 47.619 14.68 11.92 37.53 3.18
69 71 4.301628 GCATGGGCTAATTCAATTAGTGC 58.698 43.478 16.89 14.41 43.22 4.40
70 72 4.202141 GCATGGGCTAATTCAATTAGTGCA 60.202 41.667 18.77 0.00 43.22 4.57
87 89 2.033151 GTGCAAGTGACGACCTAACAAC 60.033 50.000 0.00 0.00 0.00 3.32
98 102 6.867816 TGACGACCTAACAACGTGTAATAATT 59.132 34.615 0.00 0.00 40.29 1.40
207 229 0.749091 CAATCGATGCAGAGGGCCAA 60.749 55.000 6.18 0.00 43.89 4.52
224 247 6.398095 AGGGCCAAATTTATCTTTCTTTTCG 58.602 36.000 6.18 0.00 0.00 3.46
225 248 6.014584 AGGGCCAAATTTATCTTTCTTTTCGT 60.015 34.615 6.18 0.00 0.00 3.85
254 277 0.322997 CCCCGGTGCTTTGGTATTCA 60.323 55.000 0.00 0.00 0.00 2.57
385 410 9.251792 TCACATTGTTTGATGAAAGAAATCAAG 57.748 29.630 0.00 0.00 43.10 3.02
396 421 9.702494 GATGAAAGAAATCAAGTTCAAAAGGAT 57.298 29.630 0.00 0.00 33.93 3.24
409 434 1.923356 AAAGGATCACGGCCAACATT 58.077 45.000 2.24 0.00 0.00 2.71
425 450 5.105797 GCCAACATTGTCATCCAAATAGTCA 60.106 40.000 0.00 0.00 36.44 3.41
438 463 4.932200 CCAAATAGTCAGGGCGATCTAATC 59.068 45.833 0.00 0.00 0.00 1.75
455 480 1.880271 ATCAGAATCAGCATCGCCTG 58.120 50.000 0.00 0.00 0.00 4.85
564 591 0.035881 TGGAACTCCAGCTTCTGCAG 59.964 55.000 7.63 7.63 42.01 4.41
614 660 9.855021 ATGTTACAAACTAACCATTATCTTTGC 57.145 29.630 0.00 0.00 0.00 3.68
637 683 4.100808 CCAAGTTCTTCCACCCAAAAATGA 59.899 41.667 0.00 0.00 0.00 2.57
696 743 4.635324 CGTGGTTACCCCGTATAAACAAAT 59.365 41.667 0.00 0.00 31.19 2.32
702 749 9.389755 GGTTACCCCGTATAAACAAATAGTTAA 57.610 33.333 0.00 0.00 40.26 2.01
707 754 7.364970 CCCGTATAAACAAATAGTTAATGGGC 58.635 38.462 0.00 0.00 40.26 5.36
708 755 7.229907 CCCGTATAAACAAATAGTTAATGGGCT 59.770 37.037 0.00 0.00 40.26 5.19
709 756 8.073768 CCGTATAAACAAATAGTTAATGGGCTG 58.926 37.037 0.00 0.00 40.26 4.85
710 757 8.617809 CGTATAAACAAATAGTTAATGGGCTGT 58.382 33.333 0.00 0.00 40.26 4.40
711 758 9.730420 GTATAAACAAATAGTTAATGGGCTGTG 57.270 33.333 0.00 0.00 40.26 3.66
712 759 6.909550 AAACAAATAGTTAATGGGCTGTGA 57.090 33.333 0.00 0.00 40.26 3.58
713 760 6.515272 AACAAATAGTTAATGGGCTGTGAG 57.485 37.500 0.00 0.00 39.09 3.51
714 761 5.815581 ACAAATAGTTAATGGGCTGTGAGA 58.184 37.500 0.00 0.00 0.00 3.27
716 763 5.957771 AATAGTTAATGGGCTGTGAGAGA 57.042 39.130 0.00 0.00 0.00 3.10
760 807 5.174035 CGTAAGCTAGCAATGTTAGTAGCAG 59.826 44.000 18.83 0.00 40.37 4.24
761 808 4.744795 AGCTAGCAATGTTAGTAGCAGT 57.255 40.909 18.83 0.00 40.37 4.40
762 809 5.854010 AGCTAGCAATGTTAGTAGCAGTA 57.146 39.130 18.83 0.00 40.37 2.74
763 810 6.412362 AGCTAGCAATGTTAGTAGCAGTAT 57.588 37.500 18.83 0.00 40.37 2.12
764 811 6.451393 AGCTAGCAATGTTAGTAGCAGTATC 58.549 40.000 18.83 0.00 40.37 2.24
793 840 3.580895 TGGATGCCTAGTCAAACTACACA 59.419 43.478 0.00 0.00 0.00 3.72
794 841 3.933332 GGATGCCTAGTCAAACTACACAC 59.067 47.826 0.00 0.00 0.00 3.82
877 935 2.253403 CTACTCCCCGGCCACCTTTC 62.253 65.000 2.24 0.00 0.00 2.62
1173 1240 4.085009 AGAAGATTTGCTCCCTCCTTTTG 58.915 43.478 0.00 0.00 0.00 2.44
1274 1341 6.235231 TCTACAACATCAAATACTCCCTCC 57.765 41.667 0.00 0.00 0.00 4.30
1275 1342 3.873910 ACAACATCAAATACTCCCTCCG 58.126 45.455 0.00 0.00 0.00 4.63
1276 1343 3.263425 ACAACATCAAATACTCCCTCCGT 59.737 43.478 0.00 0.00 0.00 4.69
1277 1344 4.261801 CAACATCAAATACTCCCTCCGTT 58.738 43.478 0.00 0.00 0.00 4.44
1278 1345 4.138487 ACATCAAATACTCCCTCCGTTC 57.862 45.455 0.00 0.00 0.00 3.95
1279 1346 3.118371 ACATCAAATACTCCCTCCGTTCC 60.118 47.826 0.00 0.00 0.00 3.62
1280 1347 2.829023 TCAAATACTCCCTCCGTTCCT 58.171 47.619 0.00 0.00 0.00 3.36
1281 1348 3.985127 TCAAATACTCCCTCCGTTCCTA 58.015 45.455 0.00 0.00 0.00 2.94
1282 1349 4.355549 TCAAATACTCCCTCCGTTCCTAA 58.644 43.478 0.00 0.00 0.00 2.69
1283 1350 4.778958 TCAAATACTCCCTCCGTTCCTAAA 59.221 41.667 0.00 0.00 0.00 1.85
1284 1351 5.427481 TCAAATACTCCCTCCGTTCCTAAAT 59.573 40.000 0.00 0.00 0.00 1.40
1285 1352 6.612456 TCAAATACTCCCTCCGTTCCTAAATA 59.388 38.462 0.00 0.00 0.00 1.40
1286 1353 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
1287 1354 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1288 1355 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1289 1356 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1290 1357 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1291 1358 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1292 1359 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1293 1360 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1294 1361 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1295 1362 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1296 1363 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1297 1364 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1298 1365 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1299 1366 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1300 1367 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1301 1368 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1302 1369 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1303 1370 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1304 1371 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1306 1373 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1307 1374 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1308 1375 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
1309 1376 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
1310 1377 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
1311 1378 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
1312 1379 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
1313 1380 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
1314 1381 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
1315 1382 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
1316 1383 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
1317 1384 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
1318 1385 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
1319 1386 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
1320 1387 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
1321 1388 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
1322 1389 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
1323 1390 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
1324 1391 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
1325 1392 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
1326 1393 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
1327 1394 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
1329 1396 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
1371 1438 8.029642 AGTGTAAATTCACTCATTTTACTCCG 57.970 34.615 0.00 0.00 44.07 4.63
1372 1439 7.660208 AGTGTAAATTCACTCATTTTACTCCGT 59.340 33.333 0.00 0.00 44.07 4.69
1373 1440 8.928733 GTGTAAATTCACTCATTTTACTCCGTA 58.071 33.333 0.00 0.00 36.96 4.02
1374 1441 9.661563 TGTAAATTCACTCATTTTACTCCGTAT 57.338 29.630 0.00 0.00 36.96 3.06
1375 1442 9.916397 GTAAATTCACTCATTTTACTCCGTATG 57.084 33.333 0.00 0.00 34.51 2.39
1376 1443 8.561738 AAATTCACTCATTTTACTCCGTATGT 57.438 30.769 0.00 0.00 0.00 2.29
1377 1444 9.661563 AAATTCACTCATTTTACTCCGTATGTA 57.338 29.630 0.00 0.00 0.00 2.29
1378 1445 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
1379 1446 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
1380 1447 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
1381 1448 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
1382 1449 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
1383 1450 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
1384 1451 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
1385 1452 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
1386 1453 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
1387 1454 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
1388 1455 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
1389 1456 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
1390 1457 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
1391 1458 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1392 1459 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1393 1460 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
1394 1461 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
1395 1462 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
1396 1463 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
1397 1464 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
1398 1465 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
1399 1466 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
1400 1467 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
1401 1468 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
1402 1469 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
1403 1470 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
1404 1471 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
1405 1472 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
1406 1473 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
1407 1474 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
1408 1475 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
1409 1476 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
1410 1477 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
1411 1478 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
1412 1479 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1413 1480 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1415 1482 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1416 1483 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1417 1484 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1418 1485 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1419 1486 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1420 1487 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1421 1488 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1422 1489 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1423 1490 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1424 1491 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1425 1492 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1426 1493 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1427 1494 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1428 1495 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
1433 1500 3.614568 AGGAACGGAGGGAGTATATGT 57.385 47.619 0.00 0.00 0.00 2.29
1444 1511 8.622157 CGGAGGGAGTATATGTATAGTACAATG 58.378 40.741 0.00 0.00 42.76 2.82
1476 1543 9.849166 TTAACGATGAATCCAATAAAACCTTTC 57.151 29.630 0.00 0.00 0.00 2.62
1521 4180 8.674263 TTAATTTCTTTCATTGCAACATGGTT 57.326 26.923 0.00 0.00 0.00 3.67
1612 4275 7.981789 CCTCAGATAGCAATGTAAAAGTACAGA 59.018 37.037 0.00 0.00 43.42 3.41
1769 4436 6.335471 TGTTTCGATCACTTAGGTTAGTCA 57.665 37.500 0.00 0.00 0.00 3.41
1887 4746 4.202295 TGGAAATTGCTGCAACATGGTAAA 60.202 37.500 18.51 0.00 0.00 2.01
2170 5030 1.268794 CGAGATCCTCACCGTGATCAC 60.269 57.143 16.21 16.21 39.86 3.06
2596 5477 1.741055 GCCATAAATGACGGACGGACA 60.741 52.381 0.00 0.00 0.00 4.02
2597 5478 2.623535 CCATAAATGACGGACGGACAA 58.376 47.619 0.00 0.00 0.00 3.18
2619 5501 8.803397 ACAACCATCCTATAGGTAAAGAAAAC 57.197 34.615 18.51 0.00 37.07 2.43
2629 5513 7.923414 ATAGGTAAAGAAAACTACAAGCCAG 57.077 36.000 0.00 0.00 0.00 4.85
2648 5534 3.013921 CAGTGGTAAACAGTGTGGTGTT 58.986 45.455 0.00 0.00 43.98 3.32
2656 5542 3.620427 ACAGTGTGGTGTTGTAAGTCA 57.380 42.857 0.00 0.00 0.00 3.41
2662 5548 5.054477 GTGTGGTGTTGTAAGTCATGTACT 58.946 41.667 0.00 0.00 41.49 2.73
2685 5571 2.217750 CAGGTGTGTTTGTGGATCGAA 58.782 47.619 0.00 0.00 0.00 3.71
2694 5580 0.528924 TGTGGATCGAAGGGTACGTG 59.471 55.000 0.00 0.00 0.00 4.49
2710 5596 1.324718 CGTGCGTATACGTGCTATCC 58.675 55.000 25.04 8.31 42.22 2.59
2730 5616 1.916000 CCTCGGTCGTGTCGAATAAAC 59.084 52.381 0.00 0.00 37.72 2.01
2742 5628 2.227865 TCGAATAAACAGTGCCCAAAGC 59.772 45.455 0.00 0.00 44.14 3.51
2813 5699 6.952935 AAGTTATAAGAGCAACTTCACTCG 57.047 37.500 0.00 0.00 40.12 4.18
2814 5700 6.026947 AGTTATAAGAGCAACTTCACTCGT 57.973 37.500 0.00 0.00 39.72 4.18
2815 5701 6.456501 AGTTATAAGAGCAACTTCACTCGTT 58.543 36.000 0.00 0.00 39.72 3.85
2816 5702 6.586844 AGTTATAAGAGCAACTTCACTCGTTC 59.413 38.462 0.00 0.00 39.72 3.95
2817 5703 2.890808 AGAGCAACTTCACTCGTTCA 57.109 45.000 0.00 0.00 37.99 3.18
2818 5704 3.179443 AGAGCAACTTCACTCGTTCAA 57.821 42.857 0.00 0.00 37.99 2.69
2819 5705 2.866762 AGAGCAACTTCACTCGTTCAAC 59.133 45.455 0.00 0.00 37.99 3.18
2820 5706 1.940613 AGCAACTTCACTCGTTCAACC 59.059 47.619 0.00 0.00 0.00 3.77
2821 5707 1.002792 GCAACTTCACTCGTTCAACCC 60.003 52.381 0.00 0.00 0.00 4.11
2822 5708 1.602377 CAACTTCACTCGTTCAACCCC 59.398 52.381 0.00 0.00 0.00 4.95
2823 5709 0.108019 ACTTCACTCGTTCAACCCCC 59.892 55.000 0.00 0.00 0.00 5.40
2824 5710 0.107831 CTTCACTCGTTCAACCCCCA 59.892 55.000 0.00 0.00 0.00 4.96
2825 5711 0.547075 TTCACTCGTTCAACCCCCAA 59.453 50.000 0.00 0.00 0.00 4.12
2826 5712 0.179040 TCACTCGTTCAACCCCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
2827 5713 1.227734 ACTCGTTCAACCCCCAACG 60.228 57.895 0.00 0.00 45.43 4.10
2828 5714 2.592287 TCGTTCAACCCCCAACGC 60.592 61.111 0.00 0.00 44.06 4.84
2829 5715 2.902846 CGTTCAACCCCCAACGCA 60.903 61.111 0.00 0.00 39.01 5.24
2830 5716 2.265182 CGTTCAACCCCCAACGCAT 61.265 57.895 0.00 0.00 39.01 4.73
2831 5717 0.956410 CGTTCAACCCCCAACGCATA 60.956 55.000 0.00 0.00 39.01 3.14
2832 5718 0.808755 GTTCAACCCCCAACGCATAG 59.191 55.000 0.00 0.00 0.00 2.23
2833 5719 0.322997 TTCAACCCCCAACGCATAGG 60.323 55.000 0.00 0.00 0.00 2.57
2834 5720 2.044352 AACCCCCAACGCATAGGC 60.044 61.111 0.00 0.00 0.00 3.93
2835 5721 3.655350 AACCCCCAACGCATAGGCC 62.655 63.158 0.00 0.00 36.38 5.19
2840 5726 3.130819 CAACGCATAGGCCGGCAA 61.131 61.111 30.85 16.80 36.38 4.52
2841 5727 2.124320 AACGCATAGGCCGGCAAT 60.124 55.556 30.85 18.52 36.38 3.56
2842 5728 1.147376 AACGCATAGGCCGGCAATA 59.853 52.632 30.85 20.77 36.38 1.90
2843 5729 0.250727 AACGCATAGGCCGGCAATAT 60.251 50.000 30.85 22.13 36.38 1.28
2844 5730 0.250727 ACGCATAGGCCGGCAATATT 60.251 50.000 30.85 10.28 36.38 1.28
2845 5731 0.881118 CGCATAGGCCGGCAATATTT 59.119 50.000 30.85 8.37 36.38 1.40
2846 5732 1.135689 CGCATAGGCCGGCAATATTTC 60.136 52.381 30.85 16.69 36.38 2.17
2847 5733 1.135689 GCATAGGCCGGCAATATTTCG 60.136 52.381 30.85 14.25 0.00 3.46
2848 5734 1.468520 CATAGGCCGGCAATATTTCGG 59.531 52.381 30.85 17.91 45.84 4.30
2849 5735 0.250553 TAGGCCGGCAATATTTCGGG 60.251 55.000 30.85 15.32 43.55 5.14
2850 5736 2.335011 GCCGGCAATATTTCGGGC 59.665 61.111 24.80 18.08 43.55 6.13
2852 5738 2.051345 CGGCAATATTTCGGGCGC 60.051 61.111 0.00 0.00 43.46 6.53
2853 5739 2.542907 CGGCAATATTTCGGGCGCT 61.543 57.895 7.64 0.00 43.46 5.92
2854 5740 1.282875 GGCAATATTTCGGGCGCTC 59.717 57.895 7.64 0.06 0.00 5.03
2855 5741 1.082756 GCAATATTTCGGGCGCTCG 60.083 57.895 26.97 26.97 0.00 5.03
2856 5742 1.082756 CAATATTTCGGGCGCTCGC 60.083 57.895 28.17 5.60 41.06 5.03
2872 5758 2.262211 CTCGCCCAGCAATTTTTAAGC 58.738 47.619 0.00 0.00 0.00 3.09
2873 5759 1.067213 TCGCCCAGCAATTTTTAAGCC 60.067 47.619 0.00 0.00 0.00 4.35
2874 5760 1.737838 GCCCAGCAATTTTTAAGCCC 58.262 50.000 0.00 0.00 0.00 5.19
2875 5761 1.278985 GCCCAGCAATTTTTAAGCCCT 59.721 47.619 0.00 0.00 0.00 5.19
2876 5762 2.499693 GCCCAGCAATTTTTAAGCCCTA 59.500 45.455 0.00 0.00 0.00 3.53
2877 5763 3.430790 GCCCAGCAATTTTTAAGCCCTAG 60.431 47.826 0.00 0.00 0.00 3.02
2878 5764 3.132824 CCCAGCAATTTTTAAGCCCTAGG 59.867 47.826 0.06 0.06 0.00 3.02
2879 5765 4.023291 CCAGCAATTTTTAAGCCCTAGGA 58.977 43.478 11.48 0.00 0.00 2.94
2880 5766 4.098501 CCAGCAATTTTTAAGCCCTAGGAG 59.901 45.833 11.48 1.06 0.00 3.69
2881 5767 3.701542 AGCAATTTTTAAGCCCTAGGAGC 59.298 43.478 11.48 12.30 0.00 4.70
2882 5768 3.489229 GCAATTTTTAAGCCCTAGGAGCG 60.489 47.826 11.48 0.00 34.64 5.03
2883 5769 3.926058 ATTTTTAAGCCCTAGGAGCGA 57.074 42.857 11.48 3.25 34.64 4.93
2884 5770 3.926058 TTTTTAAGCCCTAGGAGCGAT 57.074 42.857 11.48 9.19 34.64 4.58
2885 5771 3.470645 TTTTAAGCCCTAGGAGCGATC 57.529 47.619 11.48 0.00 34.64 3.69
2886 5772 2.383442 TTAAGCCCTAGGAGCGATCT 57.617 50.000 11.48 2.95 34.64 2.75
2887 5773 3.520691 TTAAGCCCTAGGAGCGATCTA 57.479 47.619 11.48 2.06 34.64 1.98
2888 5774 1.917872 AAGCCCTAGGAGCGATCTAG 58.082 55.000 11.48 0.51 35.27 2.43
2896 5782 3.119225 GAGCGATCTAGGTCCCAGT 57.881 57.895 0.00 0.00 32.92 4.00
2897 5783 0.955905 GAGCGATCTAGGTCCCAGTC 59.044 60.000 0.00 0.00 32.92 3.51
2898 5784 0.259065 AGCGATCTAGGTCCCAGTCA 59.741 55.000 0.00 0.00 0.00 3.41
2899 5785 0.386113 GCGATCTAGGTCCCAGTCAC 59.614 60.000 0.00 0.00 0.00 3.67
2900 5786 0.663688 CGATCTAGGTCCCAGTCACG 59.336 60.000 0.00 0.00 0.00 4.35
2901 5787 0.386113 GATCTAGGTCCCAGTCACGC 59.614 60.000 0.00 0.00 0.00 5.34
2902 5788 1.043673 ATCTAGGTCCCAGTCACGCC 61.044 60.000 0.00 0.00 0.00 5.68
2903 5789 2.682494 TAGGTCCCAGTCACGCCC 60.682 66.667 0.00 0.00 0.00 6.13
2931 5817 3.762247 CCCCCGAGGCGTCGTAAA 61.762 66.667 25.31 0.00 45.30 2.01
2932 5818 2.497770 CCCCGAGGCGTCGTAAAT 59.502 61.111 25.31 0.00 45.30 1.40
2933 5819 1.153509 CCCCGAGGCGTCGTAAATT 60.154 57.895 25.31 0.00 45.30 1.82
2934 5820 1.149964 CCCCGAGGCGTCGTAAATTC 61.150 60.000 25.31 0.00 45.30 2.17
2935 5821 0.458889 CCCGAGGCGTCGTAAATTCA 60.459 55.000 25.31 0.00 45.30 2.57
2936 5822 1.352114 CCGAGGCGTCGTAAATTCAA 58.648 50.000 25.31 0.00 45.30 2.69
2937 5823 1.727880 CCGAGGCGTCGTAAATTCAAA 59.272 47.619 25.31 0.00 45.30 2.69
2938 5824 2.473376 CCGAGGCGTCGTAAATTCAAAC 60.473 50.000 25.31 0.00 45.30 2.93
2939 5825 2.410730 CGAGGCGTCGTAAATTCAAACT 59.589 45.455 20.10 0.00 41.57 2.66
2940 5826 3.120786 CGAGGCGTCGTAAATTCAAACTT 60.121 43.478 20.10 0.00 41.57 2.66
2941 5827 4.392216 GAGGCGTCGTAAATTCAAACTTC 58.608 43.478 0.00 0.00 0.00 3.01
2942 5828 4.062991 AGGCGTCGTAAATTCAAACTTCT 58.937 39.130 0.00 0.00 0.00 2.85
2943 5829 4.151867 AGGCGTCGTAAATTCAAACTTCTC 59.848 41.667 0.00 0.00 0.00 2.87
2944 5830 4.392216 GCGTCGTAAATTCAAACTTCTCC 58.608 43.478 0.00 0.00 0.00 3.71
2945 5831 4.084223 GCGTCGTAAATTCAAACTTCTCCA 60.084 41.667 0.00 0.00 0.00 3.86
2946 5832 5.390567 GCGTCGTAAATTCAAACTTCTCCAT 60.391 40.000 0.00 0.00 0.00 3.41
2947 5833 6.599437 CGTCGTAAATTCAAACTTCTCCATT 58.401 36.000 0.00 0.00 0.00 3.16
2948 5834 6.736853 CGTCGTAAATTCAAACTTCTCCATTC 59.263 38.462 0.00 0.00 0.00 2.67
2949 5835 7.021790 GTCGTAAATTCAAACTTCTCCATTCC 58.978 38.462 0.00 0.00 0.00 3.01
2950 5836 6.150474 TCGTAAATTCAAACTTCTCCATTCCC 59.850 38.462 0.00 0.00 0.00 3.97
2951 5837 5.391312 AAATTCAAACTTCTCCATTCCCG 57.609 39.130 0.00 0.00 0.00 5.14
2952 5838 1.821216 TCAAACTTCTCCATTCCCGC 58.179 50.000 0.00 0.00 0.00 6.13
2953 5839 1.351017 TCAAACTTCTCCATTCCCGCT 59.649 47.619 0.00 0.00 0.00 5.52
2954 5840 2.569853 TCAAACTTCTCCATTCCCGCTA 59.430 45.455 0.00 0.00 0.00 4.26
2955 5841 2.678336 CAAACTTCTCCATTCCCGCTAC 59.322 50.000 0.00 0.00 0.00 3.58
2956 5842 0.831307 ACTTCTCCATTCCCGCTACC 59.169 55.000 0.00 0.00 0.00 3.18
2957 5843 0.106894 CTTCTCCATTCCCGCTACCC 59.893 60.000 0.00 0.00 0.00 3.69
2958 5844 0.619255 TTCTCCATTCCCGCTACCCA 60.619 55.000 0.00 0.00 0.00 4.51
2959 5845 0.619255 TCTCCATTCCCGCTACCCAA 60.619 55.000 0.00 0.00 0.00 4.12
2960 5846 0.254747 CTCCATTCCCGCTACCCAAA 59.745 55.000 0.00 0.00 0.00 3.28
2961 5847 0.699399 TCCATTCCCGCTACCCAAAA 59.301 50.000 0.00 0.00 0.00 2.44
2962 5848 1.075698 TCCATTCCCGCTACCCAAAAA 59.924 47.619 0.00 0.00 0.00 1.94
2977 5863 1.731093 AAAAACGCCACAAGTCCGG 59.269 52.632 0.00 0.00 0.00 5.14
2978 5864 0.748729 AAAAACGCCACAAGTCCGGA 60.749 50.000 0.00 0.00 0.00 5.14
2979 5865 1.164041 AAAACGCCACAAGTCCGGAG 61.164 55.000 3.06 0.00 0.00 4.63
2980 5866 2.035237 AAACGCCACAAGTCCGGAGA 62.035 55.000 3.06 0.00 0.00 3.71
2981 5867 1.827399 AACGCCACAAGTCCGGAGAT 61.827 55.000 3.06 0.00 0.00 2.75
2982 5868 1.519455 CGCCACAAGTCCGGAGATC 60.519 63.158 3.06 0.00 0.00 2.75
2983 5869 1.596934 GCCACAAGTCCGGAGATCA 59.403 57.895 3.06 0.00 0.00 2.92
2984 5870 0.460987 GCCACAAGTCCGGAGATCAG 60.461 60.000 3.06 0.00 0.00 2.90
2985 5871 0.460987 CCACAAGTCCGGAGATCAGC 60.461 60.000 3.06 0.00 0.00 4.26
2986 5872 0.247460 CACAAGTCCGGAGATCAGCA 59.753 55.000 3.06 0.00 0.00 4.41
2987 5873 0.247736 ACAAGTCCGGAGATCAGCAC 59.752 55.000 3.06 0.00 0.00 4.40
2988 5874 0.460987 CAAGTCCGGAGATCAGCACC 60.461 60.000 3.06 0.00 0.00 5.01
2989 5875 0.904865 AAGTCCGGAGATCAGCACCA 60.905 55.000 3.06 0.00 0.00 4.17
2990 5876 1.153549 GTCCGGAGATCAGCACCAC 60.154 63.158 3.06 0.00 0.00 4.16
2991 5877 1.609210 TCCGGAGATCAGCACCACA 60.609 57.895 0.00 0.00 0.00 4.17
2992 5878 1.191489 TCCGGAGATCAGCACCACAA 61.191 55.000 0.00 0.00 0.00 3.33
2993 5879 0.107508 CCGGAGATCAGCACCACAAT 60.108 55.000 0.00 0.00 0.00 2.71
3038 5924 3.599730 AGTGCGATGAAGAATCACTCA 57.400 42.857 0.00 0.00 38.69 3.41
3042 5928 5.239306 AGTGCGATGAAGAATCACTCAAAAA 59.761 36.000 0.00 0.00 38.69 1.94
3188 6074 9.941664 GATTCATAATACTCAATCCAACACAAG 57.058 33.333 0.00 0.00 0.00 3.16
3199 6085 3.702792 TCCAACACAAGGAACCTCAAAA 58.297 40.909 0.00 0.00 30.71 2.44
3263 6149 2.755650 CATCAACCCCTATGCGTAGAC 58.244 52.381 14.79 0.00 0.00 2.59
3366 6255 6.421801 TCACGAGTATTCATATGCAAGACATG 59.578 38.462 0.00 0.00 40.06 3.21
3373 6262 9.817365 GTATTCATATGCAAGACATGTATCAAC 57.183 33.333 0.00 0.00 40.06 3.18
3455 6350 4.916041 ATTCACAACAAGATGGAGAGGA 57.084 40.909 0.00 0.00 0.00 3.71
3536 6431 5.304101 ACATCTCAAGAACACAAGAGAGAGT 59.696 40.000 0.00 0.00 40.14 3.24
3537 6432 5.860941 TCTCAAGAACACAAGAGAGAGTT 57.139 39.130 0.00 0.00 32.57 3.01
3562 6463 7.419711 AGTAAACACATAGCTACTGGTACAT 57.580 36.000 0.00 0.00 38.20 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.370846 CCCATGCTACCATCTTCAACTGA 60.371 47.826 0.00 0.00 0.00 3.41
69 71 2.217847 CACGTTGTTAGGTCGTCACTTG 59.782 50.000 0.00 0.00 35.62 3.16
70 72 2.159198 ACACGTTGTTAGGTCGTCACTT 60.159 45.455 0.00 0.00 35.62 3.16
98 102 7.101054 ACTACCGCAACAGAATTAAATGTAGA 58.899 34.615 0.00 0.00 0.00 2.59
111 116 8.758633 AGCTTAATATATTACTACCGCAACAG 57.241 34.615 4.61 0.00 0.00 3.16
236 259 1.676006 GATGAATACCAAAGCACCGGG 59.324 52.381 6.32 0.00 0.00 5.73
376 401 6.294176 CCGTGATCCTTTTGAACTTGATTTCT 60.294 38.462 0.00 0.00 0.00 2.52
385 410 1.243902 TGGCCGTGATCCTTTTGAAC 58.756 50.000 0.00 0.00 0.00 3.18
396 421 1.164411 GATGACAATGTTGGCCGTGA 58.836 50.000 0.00 0.00 34.48 4.35
409 434 2.419990 CGCCCTGACTATTTGGATGACA 60.420 50.000 0.00 0.00 0.00 3.58
425 450 3.306641 GCTGATTCTGATTAGATCGCCCT 60.307 47.826 0.00 0.00 31.81 5.19
438 463 0.463295 ACCAGGCGATGCTGATTCTG 60.463 55.000 0.00 0.00 0.00 3.02
455 480 2.558313 GCGCACTTGCAAGAGACC 59.442 61.111 32.50 14.71 42.21 3.85
564 591 4.563184 GCATCGATCGATCCACTAATAACC 59.437 45.833 27.20 1.66 31.62 2.85
614 660 4.100808 TCATTTTTGGGTGGAAGAACTTGG 59.899 41.667 0.00 0.00 0.00 3.61
637 683 4.804868 TTGTGGAAACTAATGCATGCAT 57.195 36.364 27.46 27.46 38.46 3.96
696 743 5.755409 TTTCTCTCACAGCCCATTAACTA 57.245 39.130 0.00 0.00 0.00 2.24
760 807 3.439476 ACTAGGCATCCACGATACGATAC 59.561 47.826 0.00 0.00 0.00 2.24
761 808 3.682696 ACTAGGCATCCACGATACGATA 58.317 45.455 0.00 0.00 0.00 2.92
762 809 2.488545 GACTAGGCATCCACGATACGAT 59.511 50.000 0.00 0.00 0.00 3.73
763 810 1.878088 GACTAGGCATCCACGATACGA 59.122 52.381 0.00 0.00 0.00 3.43
764 811 1.607148 TGACTAGGCATCCACGATACG 59.393 52.381 0.00 0.00 0.00 3.06
1261 1328 4.748277 TTAGGAACGGAGGGAGTATTTG 57.252 45.455 0.00 0.00 0.00 2.32
1267 1334 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1268 1335 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1269 1336 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1270 1337 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1271 1338 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1272 1339 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1273 1340 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1274 1341 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1275 1342 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1276 1343 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1277 1344 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1278 1345 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1280 1347 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1281 1348 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1282 1349 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
1283 1350 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
1284 1351 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
1285 1352 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
1286 1353 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
1287 1354 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
1288 1355 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
1289 1356 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
1290 1357 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
1291 1358 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
1292 1359 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
1293 1360 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
1294 1361 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
1295 1362 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
1296 1363 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
1297 1364 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
1298 1365 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
1299 1366 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
1300 1367 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
1301 1368 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
1302 1369 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
1303 1370 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
1304 1371 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
1305 1372 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
1306 1373 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
1347 1414 7.803724 ACGGAGTAAAATGAGTGAATTTACAC 58.196 34.615 2.93 0.00 41.94 2.90
1348 1415 7.972832 ACGGAGTAAAATGAGTGAATTTACA 57.027 32.000 2.93 0.00 41.94 2.41
1364 1431 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
1365 1432 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
1366 1433 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
1367 1434 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1368 1435 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1369 1436 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
1370 1437 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
1371 1438 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
1372 1439 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
1373 1440 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
1374 1441 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
1375 1442 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
1376 1443 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
1377 1444 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
1378 1445 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
1379 1446 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
1380 1447 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
1381 1448 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
1382 1449 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
1383 1450 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
1384 1451 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
1385 1452 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
1386 1453 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1387 1454 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1389 1456 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1390 1457 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1391 1458 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1392 1459 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1393 1460 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1394 1461 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1395 1462 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1396 1463 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1397 1464 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1398 1465 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1399 1466 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1400 1467 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1401 1468 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1402 1469 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1403 1470 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1404 1471 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1405 1472 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1406 1473 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1407 1474 7.178097 ACATATACTCCCTCCGTTCCTAAATAC 59.822 40.741 0.00 0.00 0.00 1.89
1408 1475 7.243824 ACATATACTCCCTCCGTTCCTAAATA 58.756 38.462 0.00 0.00 0.00 1.40
1409 1476 6.082707 ACATATACTCCCTCCGTTCCTAAAT 58.917 40.000 0.00 0.00 0.00 1.40
1410 1477 5.461327 ACATATACTCCCTCCGTTCCTAAA 58.539 41.667 0.00 0.00 0.00 1.85
1411 1478 5.070823 ACATATACTCCCTCCGTTCCTAA 57.929 43.478 0.00 0.00 0.00 2.69
1412 1479 4.736611 ACATATACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
1413 1480 3.614568 ACATATACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
1414 1481 6.186234 ACTATACATATACTCCCTCCGTTCC 58.814 44.000 0.00 0.00 0.00 3.62
1415 1482 7.826252 TGTACTATACATATACTCCCTCCGTTC 59.174 40.741 0.00 0.00 32.89 3.95
1416 1483 7.693132 TGTACTATACATATACTCCCTCCGTT 58.307 38.462 0.00 0.00 32.89 4.44
1417 1484 7.262990 TGTACTATACATATACTCCCTCCGT 57.737 40.000 0.00 0.00 32.89 4.69
1418 1485 8.622157 CATTGTACTATACATATACTCCCTCCG 58.378 40.741 0.00 0.00 38.68 4.63
1419 1486 9.696572 TCATTGTACTATACATATACTCCCTCC 57.303 37.037 0.00 0.00 38.68 4.30
1452 1519 8.028938 CAGAAAGGTTTTATTGGATTCATCGTT 58.971 33.333 0.00 0.00 0.00 3.85
1476 1543 1.009829 GCATGTAGCTTCCGTTCCAG 58.990 55.000 0.00 0.00 41.15 3.86
1509 1576 5.221283 CCTGCATATATCAACCATGTTGCAA 60.221 40.000 0.00 0.00 0.00 4.08
1887 4746 6.479660 CACAGTTGCACATCCAAAGTTAAATT 59.520 34.615 0.00 0.00 0.00 1.82
2073 4933 2.417257 GCGCCAATGAGATGCCCAA 61.417 57.895 0.00 0.00 0.00 4.12
2579 5460 2.027929 TGGTTGTCCGTCCGTCATTTAT 60.028 45.455 0.00 0.00 36.30 1.40
2597 5478 9.275572 TGTAGTTTTCTTTACCTATAGGATGGT 57.724 33.333 26.01 6.19 40.12 3.55
2619 5501 3.498397 CACTGTTTACCACTGGCTTGTAG 59.502 47.826 0.00 0.00 0.00 2.74
2629 5513 2.750712 ACAACACCACACTGTTTACCAC 59.249 45.455 0.00 0.00 31.73 4.16
2648 5534 4.770531 ACACCTGCTAGTACATGACTTACA 59.229 41.667 0.00 0.58 39.81 2.41
2656 5542 4.065088 CACAAACACACCTGCTAGTACAT 58.935 43.478 0.00 0.00 0.00 2.29
2662 5548 2.778299 GATCCACAAACACACCTGCTA 58.222 47.619 0.00 0.00 0.00 3.49
2694 5580 1.465354 CGAGGGATAGCACGTATACGC 60.465 57.143 24.64 9.82 44.43 4.42
2708 5594 0.392863 TATTCGACACGACCGAGGGA 60.393 55.000 0.00 0.00 37.35 4.20
2710 5596 1.916000 GTTTATTCGACACGACCGAGG 59.084 52.381 0.00 0.00 37.35 4.63
2742 5628 0.452987 TTAGCTAGTACACGGGTGCG 59.547 55.000 0.00 0.00 34.50 5.34
2792 5678 6.365247 TGAACGAGTGAAGTTGCTCTTATAAC 59.635 38.462 0.00 0.00 36.40 1.89
2795 5681 4.883083 TGAACGAGTGAAGTTGCTCTTAT 58.117 39.130 0.00 0.00 36.40 1.73
2800 5686 1.940613 GGTTGAACGAGTGAAGTTGCT 59.059 47.619 0.00 0.00 31.14 3.91
2801 5687 1.002792 GGGTTGAACGAGTGAAGTTGC 60.003 52.381 0.00 0.00 31.14 4.17
2802 5688 1.602377 GGGGTTGAACGAGTGAAGTTG 59.398 52.381 0.00 0.00 31.14 3.16
2803 5689 1.476291 GGGGGTTGAACGAGTGAAGTT 60.476 52.381 0.00 0.00 34.07 2.66
2804 5690 0.108019 GGGGGTTGAACGAGTGAAGT 59.892 55.000 0.00 0.00 0.00 3.01
2805 5691 0.107831 TGGGGGTTGAACGAGTGAAG 59.892 55.000 0.00 0.00 0.00 3.02
2806 5692 0.547075 TTGGGGGTTGAACGAGTGAA 59.453 50.000 0.00 0.00 0.00 3.18
2807 5693 0.179040 GTTGGGGGTTGAACGAGTGA 60.179 55.000 0.00 0.00 0.00 3.41
2808 5694 1.503818 CGTTGGGGGTTGAACGAGTG 61.504 60.000 0.00 0.00 46.19 3.51
2809 5695 1.227734 CGTTGGGGGTTGAACGAGT 60.228 57.895 0.00 0.00 46.19 4.18
2810 5696 2.613506 GCGTTGGGGGTTGAACGAG 61.614 63.158 8.36 0.00 46.19 4.18
2811 5697 2.592287 GCGTTGGGGGTTGAACGA 60.592 61.111 8.36 0.00 46.19 3.85
2812 5698 0.956410 TATGCGTTGGGGGTTGAACG 60.956 55.000 0.00 0.00 46.07 3.95
2813 5699 0.808755 CTATGCGTTGGGGGTTGAAC 59.191 55.000 0.00 0.00 0.00 3.18
2814 5700 0.322997 CCTATGCGTTGGGGGTTGAA 60.323 55.000 0.00 0.00 0.00 2.69
2815 5701 1.301623 CCTATGCGTTGGGGGTTGA 59.698 57.895 0.00 0.00 0.00 3.18
2816 5702 2.414785 GCCTATGCGTTGGGGGTTG 61.415 63.158 8.54 0.00 0.00 3.77
2817 5703 2.044352 GCCTATGCGTTGGGGGTT 60.044 61.111 8.54 0.00 0.00 4.11
2818 5704 4.123545 GGCCTATGCGTTGGGGGT 62.124 66.667 8.54 0.00 38.85 4.95
2823 5709 1.163420 TATTGCCGGCCTATGCGTTG 61.163 55.000 26.77 0.00 38.85 4.10
2824 5710 0.250727 ATATTGCCGGCCTATGCGTT 60.251 50.000 26.77 1.79 38.85 4.84
2825 5711 0.250727 AATATTGCCGGCCTATGCGT 60.251 50.000 26.77 3.55 38.85 5.24
2826 5712 0.881118 AAATATTGCCGGCCTATGCG 59.119 50.000 26.77 0.00 38.85 4.73
2827 5713 1.135689 CGAAATATTGCCGGCCTATGC 60.136 52.381 26.77 14.66 0.00 3.14
2828 5714 1.468520 CCGAAATATTGCCGGCCTATG 59.531 52.381 26.77 9.13 36.62 2.23
2829 5715 1.613255 CCCGAAATATTGCCGGCCTAT 60.613 52.381 26.77 19.67 41.74 2.57
2830 5716 0.250553 CCCGAAATATTGCCGGCCTA 60.251 55.000 26.77 16.34 41.74 3.93
2831 5717 1.528309 CCCGAAATATTGCCGGCCT 60.528 57.895 26.77 14.39 41.74 5.19
2832 5718 3.039134 CCCGAAATATTGCCGGCC 58.961 61.111 26.77 6.44 41.74 6.13
2833 5719 2.335011 GCCCGAAATATTGCCGGC 59.665 61.111 22.73 22.73 41.74 6.13
2834 5720 2.637025 CGCCCGAAATATTGCCGG 59.363 61.111 17.79 17.79 42.64 6.13
2835 5721 2.051345 GCGCCCGAAATATTGCCG 60.051 61.111 0.00 0.00 0.00 5.69
2836 5722 1.282875 GAGCGCCCGAAATATTGCC 59.717 57.895 2.29 0.00 0.00 4.52
2837 5723 1.082756 CGAGCGCCCGAAATATTGC 60.083 57.895 4.91 0.00 0.00 3.56
2838 5724 1.082756 GCGAGCGCCCGAAATATTG 60.083 57.895 17.92 0.00 34.56 1.90
2839 5725 3.330275 GCGAGCGCCCGAAATATT 58.670 55.556 17.92 0.00 34.56 1.28
2852 5738 2.262211 GCTTAAAAATTGCTGGGCGAG 58.738 47.619 0.00 0.00 0.00 5.03
2853 5739 1.067213 GGCTTAAAAATTGCTGGGCGA 60.067 47.619 0.00 0.00 0.00 5.54
2854 5740 1.358877 GGCTTAAAAATTGCTGGGCG 58.641 50.000 0.00 0.00 0.00 6.13
2855 5741 1.278985 AGGGCTTAAAAATTGCTGGGC 59.721 47.619 0.00 0.00 0.00 5.36
2856 5742 3.132824 CCTAGGGCTTAAAAATTGCTGGG 59.867 47.826 0.00 0.00 0.00 4.45
2857 5743 4.023291 TCCTAGGGCTTAAAAATTGCTGG 58.977 43.478 9.46 0.00 0.00 4.85
2858 5744 4.440663 GCTCCTAGGGCTTAAAAATTGCTG 60.441 45.833 9.46 0.00 0.00 4.41
2859 5745 3.701542 GCTCCTAGGGCTTAAAAATTGCT 59.298 43.478 9.46 0.00 0.00 3.91
2860 5746 3.489229 CGCTCCTAGGGCTTAAAAATTGC 60.489 47.826 9.46 0.00 0.00 3.56
2861 5747 3.945285 TCGCTCCTAGGGCTTAAAAATTG 59.055 43.478 9.46 0.00 0.00 2.32
2862 5748 4.230745 TCGCTCCTAGGGCTTAAAAATT 57.769 40.909 9.46 0.00 0.00 1.82
2863 5749 3.926058 TCGCTCCTAGGGCTTAAAAAT 57.074 42.857 9.46 0.00 0.00 1.82
2864 5750 3.454812 AGATCGCTCCTAGGGCTTAAAAA 59.545 43.478 9.46 0.00 0.00 1.94
2865 5751 3.039011 AGATCGCTCCTAGGGCTTAAAA 58.961 45.455 9.46 0.00 0.00 1.52
2866 5752 2.679082 AGATCGCTCCTAGGGCTTAAA 58.321 47.619 9.46 0.00 0.00 1.52
2867 5753 2.383442 AGATCGCTCCTAGGGCTTAA 57.617 50.000 9.46 0.75 0.00 1.85
2868 5754 2.291024 CCTAGATCGCTCCTAGGGCTTA 60.291 54.545 9.46 3.11 45.98 3.09
2869 5755 1.549037 CCTAGATCGCTCCTAGGGCTT 60.549 57.143 9.46 1.93 45.98 4.35
2870 5756 0.039035 CCTAGATCGCTCCTAGGGCT 59.961 60.000 9.46 0.00 45.98 5.19
2871 5757 2.573920 CCTAGATCGCTCCTAGGGC 58.426 63.158 9.46 10.47 45.98 5.19
2874 5760 1.074084 TGGGACCTAGATCGCTCCTAG 59.926 57.143 2.39 0.00 34.77 3.02
2875 5761 1.074084 CTGGGACCTAGATCGCTCCTA 59.926 57.143 0.00 0.00 32.90 2.94
2876 5762 0.178975 CTGGGACCTAGATCGCTCCT 60.179 60.000 0.00 0.00 32.90 3.69
2877 5763 0.468400 ACTGGGACCTAGATCGCTCC 60.468 60.000 12.53 0.00 32.90 4.70
2878 5764 0.955905 GACTGGGACCTAGATCGCTC 59.044 60.000 12.53 0.00 32.90 5.03
2879 5765 0.259065 TGACTGGGACCTAGATCGCT 59.741 55.000 12.53 0.00 32.90 4.93
2880 5766 0.386113 GTGACTGGGACCTAGATCGC 59.614 60.000 12.53 8.30 0.00 4.58
2881 5767 0.663688 CGTGACTGGGACCTAGATCG 59.336 60.000 12.53 8.91 0.00 3.69
2882 5768 0.386113 GCGTGACTGGGACCTAGATC 59.614 60.000 12.53 6.22 0.00 2.75
2883 5769 1.043673 GGCGTGACTGGGACCTAGAT 61.044 60.000 12.53 0.00 0.00 1.98
2884 5770 1.681327 GGCGTGACTGGGACCTAGA 60.681 63.158 12.53 0.00 0.00 2.43
2885 5771 2.722201 GGGCGTGACTGGGACCTAG 61.722 68.421 2.75 2.75 0.00 3.02
2886 5772 2.682494 GGGCGTGACTGGGACCTA 60.682 66.667 0.00 0.00 0.00 3.08
2893 5779 4.704833 CACCTGGGGGCGTGACTG 62.705 72.222 0.00 0.00 35.63 3.51
2914 5800 2.582734 AATTTACGACGCCTCGGGGG 62.583 60.000 1.90 4.26 44.80 5.40
2915 5801 1.149964 GAATTTACGACGCCTCGGGG 61.150 60.000 9.87 0.00 44.80 5.73
2916 5802 0.458889 TGAATTTACGACGCCTCGGG 60.459 55.000 9.87 0.00 44.80 5.14
2917 5803 1.352114 TTGAATTTACGACGCCTCGG 58.648 50.000 9.87 0.00 44.80 4.63
2918 5804 2.410730 AGTTTGAATTTACGACGCCTCG 59.589 45.455 3.44 3.44 46.06 4.63
2919 5805 4.151867 AGAAGTTTGAATTTACGACGCCTC 59.848 41.667 0.00 0.00 0.00 4.70
2920 5806 4.062991 AGAAGTTTGAATTTACGACGCCT 58.937 39.130 0.00 0.00 0.00 5.52
2921 5807 4.392216 GAGAAGTTTGAATTTACGACGCC 58.608 43.478 0.00 0.00 0.00 5.68
2922 5808 4.084223 TGGAGAAGTTTGAATTTACGACGC 60.084 41.667 0.00 0.00 0.00 5.19
2923 5809 5.585500 TGGAGAAGTTTGAATTTACGACG 57.415 39.130 0.00 0.00 0.00 5.12
2924 5810 7.021790 GGAATGGAGAAGTTTGAATTTACGAC 58.978 38.462 0.00 0.00 0.00 4.34
2925 5811 6.150474 GGGAATGGAGAAGTTTGAATTTACGA 59.850 38.462 0.00 0.00 0.00 3.43
2926 5812 6.322491 GGGAATGGAGAAGTTTGAATTTACG 58.678 40.000 0.00 0.00 0.00 3.18
2927 5813 6.322491 CGGGAATGGAGAAGTTTGAATTTAC 58.678 40.000 0.00 0.00 0.00 2.01
2928 5814 5.105917 GCGGGAATGGAGAAGTTTGAATTTA 60.106 40.000 0.00 0.00 0.00 1.40
2929 5815 4.321974 GCGGGAATGGAGAAGTTTGAATTT 60.322 41.667 0.00 0.00 0.00 1.82
2930 5816 3.193479 GCGGGAATGGAGAAGTTTGAATT 59.807 43.478 0.00 0.00 0.00 2.17
2931 5817 2.755103 GCGGGAATGGAGAAGTTTGAAT 59.245 45.455 0.00 0.00 0.00 2.57
2932 5818 2.159382 GCGGGAATGGAGAAGTTTGAA 58.841 47.619 0.00 0.00 0.00 2.69
2933 5819 1.351017 AGCGGGAATGGAGAAGTTTGA 59.649 47.619 0.00 0.00 0.00 2.69
2934 5820 1.826385 AGCGGGAATGGAGAAGTTTG 58.174 50.000 0.00 0.00 0.00 2.93
2935 5821 2.355818 GGTAGCGGGAATGGAGAAGTTT 60.356 50.000 0.00 0.00 0.00 2.66
2936 5822 1.209747 GGTAGCGGGAATGGAGAAGTT 59.790 52.381 0.00 0.00 0.00 2.66
2937 5823 0.831307 GGTAGCGGGAATGGAGAAGT 59.169 55.000 0.00 0.00 0.00 3.01
2938 5824 0.106894 GGGTAGCGGGAATGGAGAAG 59.893 60.000 0.00 0.00 0.00 2.85
2939 5825 0.619255 TGGGTAGCGGGAATGGAGAA 60.619 55.000 0.00 0.00 0.00 2.87
2940 5826 0.619255 TTGGGTAGCGGGAATGGAGA 60.619 55.000 0.00 0.00 0.00 3.71
2941 5827 0.254747 TTTGGGTAGCGGGAATGGAG 59.745 55.000 0.00 0.00 0.00 3.86
2942 5828 0.699399 TTTTGGGTAGCGGGAATGGA 59.301 50.000 0.00 0.00 0.00 3.41
2943 5829 1.551452 TTTTTGGGTAGCGGGAATGG 58.449 50.000 0.00 0.00 0.00 3.16
2959 5845 0.748729 TCCGGACTTGTGGCGTTTTT 60.749 50.000 0.00 0.00 0.00 1.94
2960 5846 1.153127 TCCGGACTTGTGGCGTTTT 60.153 52.632 0.00 0.00 0.00 2.43
2961 5847 1.597027 CTCCGGACTTGTGGCGTTT 60.597 57.895 0.00 0.00 0.00 3.60
2962 5848 1.827399 ATCTCCGGACTTGTGGCGTT 61.827 55.000 0.00 0.00 0.00 4.84
2963 5849 2.227089 GATCTCCGGACTTGTGGCGT 62.227 60.000 0.00 0.00 0.00 5.68
2964 5850 1.519455 GATCTCCGGACTTGTGGCG 60.519 63.158 0.00 0.00 0.00 5.69
2965 5851 0.460987 CTGATCTCCGGACTTGTGGC 60.461 60.000 0.00 0.00 0.00 5.01
2966 5852 0.460987 GCTGATCTCCGGACTTGTGG 60.461 60.000 0.00 0.00 0.00 4.17
2967 5853 0.247460 TGCTGATCTCCGGACTTGTG 59.753 55.000 0.00 0.00 0.00 3.33
2968 5854 0.247736 GTGCTGATCTCCGGACTTGT 59.752 55.000 0.00 0.00 0.00 3.16
2969 5855 0.460987 GGTGCTGATCTCCGGACTTG 60.461 60.000 0.00 0.00 0.00 3.16
2970 5856 0.904865 TGGTGCTGATCTCCGGACTT 60.905 55.000 0.00 0.00 0.00 3.01
2971 5857 1.305297 TGGTGCTGATCTCCGGACT 60.305 57.895 0.00 0.00 0.00 3.85
2972 5858 1.153549 GTGGTGCTGATCTCCGGAC 60.154 63.158 0.00 0.00 0.00 4.79
2973 5859 1.191489 TTGTGGTGCTGATCTCCGGA 61.191 55.000 2.93 2.93 0.00 5.14
2974 5860 0.107508 ATTGTGGTGCTGATCTCCGG 60.108 55.000 0.00 0.00 0.00 5.14
2975 5861 1.742761 AATTGTGGTGCTGATCTCCG 58.257 50.000 0.00 0.00 0.00 4.63
2976 5862 2.165030 CCAAATTGTGGTGCTGATCTCC 59.835 50.000 0.00 0.00 43.20 3.71
2977 5863 3.498927 CCAAATTGTGGTGCTGATCTC 57.501 47.619 0.00 0.00 43.20 2.75
2988 5874 6.239289 GGGGTGGTTATATGATCCAAATTGTG 60.239 42.308 0.00 0.00 32.82 3.33
2989 5875 5.838521 GGGGTGGTTATATGATCCAAATTGT 59.161 40.000 0.00 0.00 32.82 2.71
2990 5876 6.077322 AGGGGTGGTTATATGATCCAAATTG 58.923 40.000 0.00 0.00 32.82 2.32
2991 5877 6.125919 TGAGGGGTGGTTATATGATCCAAATT 60.126 38.462 0.00 0.00 32.82 1.82
2992 5878 5.375354 TGAGGGGTGGTTATATGATCCAAAT 59.625 40.000 0.00 0.00 32.82 2.32
2993 5879 4.729370 TGAGGGGTGGTTATATGATCCAAA 59.271 41.667 0.00 0.00 32.82 3.28
3038 5924 6.650120 TGTTCTCCGCTAGATAGGAATTTTT 58.350 36.000 0.00 0.00 35.90 1.94
3042 5928 6.948886 TCTTATGTTCTCCGCTAGATAGGAAT 59.051 38.462 0.00 0.00 35.90 3.01
3188 6074 0.679505 GGGGCACTTTTTGAGGTTCC 59.320 55.000 0.00 0.00 0.00 3.62
3199 6085 2.618045 CGGTAGAAATCTTGGGGCACTT 60.618 50.000 0.00 0.00 0.00 3.16
3263 6149 0.178068 CCGAGGTGACATTGGGGTAG 59.822 60.000 0.00 0.00 0.00 3.18
3366 6255 7.792374 TTATGGATTTGAGAGCAGTTGATAC 57.208 36.000 0.00 0.00 0.00 2.24
3373 6262 8.896744 TGAATACTTTTATGGATTTGAGAGCAG 58.103 33.333 0.00 0.00 0.00 4.24
3455 6350 5.359194 AGTCGGATCATATGGTGTTTTCT 57.641 39.130 2.13 0.00 0.00 2.52
3536 6431 8.352137 TGTACCAGTAGCTATGTGTTTACTAA 57.648 34.615 0.00 0.00 0.00 2.24
3537 6432 7.943079 TGTACCAGTAGCTATGTGTTTACTA 57.057 36.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.