Multiple sequence alignment - TraesCS2D01G460100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G460100 chr2D 100.000 4412 0 0 1 4412 566838732 566834321 0.000000e+00 8148
1 TraesCS2D01G460100 chr2D 92.608 744 32 7 2683 3425 566980592 566979871 0.000000e+00 1048
2 TraesCS2D01G460100 chr2D 86.714 700 58 20 452 1139 566982004 566981328 0.000000e+00 745
3 TraesCS2D01G460100 chr2D 83.884 242 29 7 1734 1967 181304343 181304104 5.740000e-54 222
4 TraesCS2D01G460100 chr2B 94.242 1754 74 16 1920 3669 679816854 679815124 0.000000e+00 2654
5 TraesCS2D01G460100 chr2B 93.377 1223 71 9 86 1301 679819896 679818677 0.000000e+00 1801
6 TraesCS2D01G460100 chr2B 92.744 758 30 6 2680 3437 679885942 679885210 0.000000e+00 1072
7 TraesCS2D01G460100 chr2B 91.549 781 40 18 3651 4410 679815102 679814327 0.000000e+00 1053
8 TraesCS2D01G460100 chr2B 87.536 698 65 16 452 1139 679887202 679886517 0.000000e+00 787
9 TraesCS2D01G460100 chr2B 91.045 268 15 4 1362 1620 679817114 679816847 1.950000e-93 353
10 TraesCS2D01G460100 chr2B 84.783 138 16 5 2541 2675 10767615 10767480 2.770000e-27 134
11 TraesCS2D01G460100 chr2A 93.180 1349 72 11 1 1343 706646128 706644794 0.000000e+00 1964
12 TraesCS2D01G460100 chr2A 95.309 1002 29 7 2675 3669 706644628 706643638 0.000000e+00 1574
13 TraesCS2D01G460100 chr2A 92.318 755 33 6 2683 3437 706742072 706741343 0.000000e+00 1050
14 TraesCS2D01G460100 chr2A 87.410 691 63 15 463 1139 706743329 706742649 0.000000e+00 773
15 TraesCS2D01G460100 chr2A 90.942 552 36 4 3869 4410 706642470 706641923 0.000000e+00 730
16 TraesCS2D01G460100 chr2A 85.000 240 27 6 1734 1967 196518568 196518332 7.380000e-58 235
17 TraesCS2D01G460100 chr2A 93.548 124 3 4 3651 3769 706643616 706643493 3.510000e-41 180
18 TraesCS2D01G460100 chr4D 85.897 234 23 6 1741 1966 319269844 319269613 1.590000e-59 241
19 TraesCS2D01G460100 chr6D 85.169 236 31 3 1734 1966 284503940 284503706 5.700000e-59 239
20 TraesCS2D01G460100 chr4B 85.169 236 26 5 1738 1966 396716265 396716032 2.650000e-57 233
21 TraesCS2D01G460100 chr4B 83.099 142 16 7 2538 2675 367334653 367334790 5.990000e-24 122
22 TraesCS2D01G460100 chr3D 84.810 237 25 9 1738 1967 58475812 58475580 1.230000e-55 228
23 TraesCS2D01G460100 chr3D 83.544 237 32 5 1734 1966 158361953 158362186 9.610000e-52 215
24 TraesCS2D01G460100 chr3D 82.400 250 35 9 1722 1966 338883076 338882831 4.470000e-50 209
25 TraesCS2D01G460100 chr4A 83.761 234 35 2 1736 1966 121480430 121480197 7.430000e-53 219
26 TraesCS2D01G460100 chr3A 83.333 144 19 5 2535 2675 475281056 475281197 1.290000e-25 128
27 TraesCS2D01G460100 chr5A 82.979 141 19 5 2538 2675 426477079 426476941 5.990000e-24 122
28 TraesCS2D01G460100 chr5A 83.582 134 16 6 2545 2675 475311609 475311739 2.160000e-23 121
29 TraesCS2D01G460100 chr5A 82.963 135 18 5 2537 2668 563329261 563329129 2.790000e-22 117
30 TraesCS2D01G460100 chr6B 82.270 141 21 4 2537 2675 633550834 633550972 7.750000e-23 119
31 TraesCS2D01G460100 chr1A 82.270 141 20 5 2538 2675 137923989 137924127 2.790000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G460100 chr2D 566834321 566838732 4411 True 8148.00 8148 100.00000 1 4412 1 chr2D.!!$R2 4411
1 TraesCS2D01G460100 chr2D 566979871 566982004 2133 True 896.50 1048 89.66100 452 3425 2 chr2D.!!$R3 2973
2 TraesCS2D01G460100 chr2B 679814327 679819896 5569 True 1465.25 2654 92.55325 86 4410 4 chr2B.!!$R2 4324
3 TraesCS2D01G460100 chr2B 679885210 679887202 1992 True 929.50 1072 90.14000 452 3437 2 chr2B.!!$R3 2985
4 TraesCS2D01G460100 chr2A 706641923 706646128 4205 True 1112.00 1964 93.24475 1 4410 4 chr2A.!!$R2 4409
5 TraesCS2D01G460100 chr2A 706741343 706743329 1986 True 911.50 1050 89.86400 463 3437 2 chr2A.!!$R3 2974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 587 0.171007 CGGTGGATCCATGTTGCAAC 59.829 55.0 22.83 22.83 35.57 4.17 F
1686 3558 0.240945 GCGCAACACCAAGCAATAGT 59.759 50.0 0.30 0.00 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 3751 0.107897 ACGCGAGGATGGCAATTGTA 60.108 50.0 15.93 0.0 41.24 2.41 R
3606 5649 0.659957 CGGGAGGTAGCACGTAGTAC 59.340 60.0 0.00 0.0 41.61 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.136323 GAAACACTCATTAATGGGGATTAGATT 57.864 33.333 19.43 4.72 30.76 2.40
163 164 5.049612 CGGACCAAAGAAACTAAGAAAGACC 60.050 44.000 0.00 0.00 0.00 3.85
215 216 2.404923 AGCTAGTCGTCTGCAGAGTA 57.595 50.000 18.89 5.09 0.00 2.59
220 221 1.081892 GTCGTCTGCAGAGTACGGTA 58.918 55.000 18.89 0.00 37.24 4.02
221 222 1.081892 TCGTCTGCAGAGTACGGTAC 58.918 55.000 18.89 10.29 37.24 3.34
296 298 8.853077 AATATTTCTTCCATCATTGATAGCGA 57.147 30.769 0.00 0.00 0.00 4.93
375 377 9.645059 TTTCTGTAGAAAGATGTCACTCTATTG 57.355 33.333 3.05 0.00 38.94 1.90
381 383 4.399004 AGATGTCACTCTATTGGCTCAC 57.601 45.455 0.00 0.00 0.00 3.51
404 406 5.819379 ACTGCAGTTGTATCAACTCCATATG 59.181 40.000 15.25 0.00 0.00 1.78
408 410 5.463392 CAGTTGTATCAACTCCATATGACGG 59.537 44.000 11.47 0.00 0.00 4.79
411 413 7.232737 AGTTGTATCAACTCCATATGACGGATA 59.767 37.037 3.65 2.01 0.00 2.59
542 549 3.378112 TCATACGTACCGTCCTCGAATTT 59.622 43.478 0.00 0.00 41.54 1.82
561 568 1.795768 TCAGCTTCTGCAAGTTACCG 58.204 50.000 0.00 0.00 42.74 4.02
573 581 1.580059 AGTTACCGGTGGATCCATGT 58.420 50.000 19.62 17.34 35.57 3.21
579 587 0.171007 CGGTGGATCCATGTTGCAAC 59.829 55.000 22.83 22.83 35.57 4.17
706 728 0.598065 CAAACAGTTAGTGGGGCTGC 59.402 55.000 0.00 0.00 33.87 5.25
721 746 0.523072 GCTGCGAGGAAAAATCAGCA 59.477 50.000 7.55 0.00 46.64 4.41
722 747 1.730446 GCTGCGAGGAAAAATCAGCAC 60.730 52.381 7.55 0.00 46.64 4.40
753 778 5.518847 CGTAAGCTAGCAATGTTAGTAGCAA 59.481 40.000 18.83 0.00 40.37 3.91
929 965 3.435671 GCGTACAATTACCAAGCTCAACT 59.564 43.478 0.00 0.00 0.00 3.16
946 982 5.491982 CTCAACTCACCAGCTTAATTACCT 58.508 41.667 0.00 0.00 0.00 3.08
1101 1137 3.256960 GACCCCACCCAGCTCCAA 61.257 66.667 0.00 0.00 0.00 3.53
1417 3281 9.707957 ATTTATGATACACCAGTTTTATGGGAA 57.292 29.630 0.00 0.00 45.25 3.97
1433 3297 7.593875 TTATGGGAAAATTTTGATTTGAGCG 57.406 32.000 8.47 0.00 0.00 5.03
1438 3302 1.265236 ATTTTGATTTGAGCGGCCCA 58.735 45.000 0.00 0.00 0.00 5.36
1451 3315 1.067060 GCGGCCCAGTATTTTTCATCC 59.933 52.381 0.00 0.00 0.00 3.51
1456 3320 4.207165 GCCCAGTATTTTTCATCCAGCTA 58.793 43.478 0.00 0.00 0.00 3.32
1462 3326 9.778741 CCAGTATTTTTCATCCAGCTAGTAATA 57.221 33.333 0.00 0.00 0.00 0.98
1491 3356 6.844696 TTAGCAAAATCCAGCTAGTAATCG 57.155 37.500 0.00 0.00 43.50 3.34
1506 3371 5.424121 AGTAATCGTGCAGAAATAATGCC 57.576 39.130 0.00 0.00 43.18 4.40
1525 3397 7.582909 AATGCCACTAATTATACATCCCCTA 57.417 36.000 0.00 0.00 0.00 3.53
1529 3401 7.942341 TGCCACTAATTATACATCCCCTAAAAG 59.058 37.037 0.00 0.00 0.00 2.27
1531 3403 9.503399 CCACTAATTATACATCCCCTAAAAGAC 57.497 37.037 0.00 0.00 0.00 3.01
1601 3473 3.932545 ATTGTTGACGCAGGCAAATAA 57.067 38.095 0.00 0.00 0.00 1.40
1612 3484 6.804677 ACGCAGGCAAATAATTCATAATCAA 58.195 32.000 0.00 0.00 0.00 2.57
1613 3485 7.436118 ACGCAGGCAAATAATTCATAATCAAT 58.564 30.769 0.00 0.00 0.00 2.57
1614 3486 7.927629 ACGCAGGCAAATAATTCATAATCAATT 59.072 29.630 0.00 0.00 0.00 2.32
1615 3487 8.767085 CGCAGGCAAATAATTCATAATCAATTT 58.233 29.630 0.00 0.00 0.00 1.82
1616 3488 9.872757 GCAGGCAAATAATTCATAATCAATTTG 57.127 29.630 11.96 11.96 37.29 2.32
1626 3498 9.595823 AATTCATAATCAATTTGGAGCTTTCAG 57.404 29.630 0.00 0.00 0.00 3.02
1627 3499 7.104043 TCATAATCAATTTGGAGCTTTCAGG 57.896 36.000 0.00 0.00 0.00 3.86
1628 3500 6.664816 TCATAATCAATTTGGAGCTTTCAGGT 59.335 34.615 0.00 0.00 0.00 4.00
1629 3501 7.833682 TCATAATCAATTTGGAGCTTTCAGGTA 59.166 33.333 0.00 0.00 0.00 3.08
1630 3502 6.916360 AATCAATTTGGAGCTTTCAGGTAA 57.084 33.333 0.00 0.00 0.00 2.85
1631 3503 7.486407 AATCAATTTGGAGCTTTCAGGTAAT 57.514 32.000 0.00 0.00 0.00 1.89
1632 3504 6.916360 TCAATTTGGAGCTTTCAGGTAATT 57.084 33.333 0.00 0.00 0.00 1.40
1633 3505 6.690530 TCAATTTGGAGCTTTCAGGTAATTG 58.309 36.000 14.16 14.16 33.69 2.32
1634 3506 6.493115 TCAATTTGGAGCTTTCAGGTAATTGA 59.507 34.615 16.64 16.64 36.58 2.57
1635 3507 7.178983 TCAATTTGGAGCTTTCAGGTAATTGAT 59.821 33.333 16.64 0.00 35.25 2.57
1636 3508 6.916360 TTTGGAGCTTTCAGGTAATTGATT 57.084 33.333 0.00 0.00 0.00 2.57
1637 3509 5.902613 TGGAGCTTTCAGGTAATTGATTG 57.097 39.130 0.00 0.00 0.00 2.67
1638 3510 4.706476 TGGAGCTTTCAGGTAATTGATTGG 59.294 41.667 0.00 0.00 0.00 3.16
1639 3511 4.949856 GGAGCTTTCAGGTAATTGATTGGA 59.050 41.667 0.00 0.00 0.00 3.53
1640 3512 5.067023 GGAGCTTTCAGGTAATTGATTGGAG 59.933 44.000 0.00 0.00 0.00 3.86
1641 3513 5.819991 AGCTTTCAGGTAATTGATTGGAGA 58.180 37.500 0.00 0.00 0.00 3.71
1642 3514 5.649831 AGCTTTCAGGTAATTGATTGGAGAC 59.350 40.000 0.00 0.00 0.00 3.36
1643 3515 5.649831 GCTTTCAGGTAATTGATTGGAGACT 59.350 40.000 0.00 0.00 0.00 3.24
1644 3516 6.151817 GCTTTCAGGTAATTGATTGGAGACTT 59.848 38.462 0.00 0.00 0.00 3.01
1645 3517 7.309438 GCTTTCAGGTAATTGATTGGAGACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1646 3518 8.477419 TTTCAGGTAATTGATTGGAGACTTTT 57.523 30.769 0.00 0.00 0.00 2.27
1647 3519 7.687941 TCAGGTAATTGATTGGAGACTTTTC 57.312 36.000 0.00 0.00 0.00 2.29
1648 3520 7.230747 TCAGGTAATTGATTGGAGACTTTTCA 58.769 34.615 0.00 0.00 0.00 2.69
1649 3521 7.723616 TCAGGTAATTGATTGGAGACTTTTCAA 59.276 33.333 0.00 0.00 0.00 2.69
1650 3522 8.359642 CAGGTAATTGATTGGAGACTTTTCAAA 58.640 33.333 0.00 0.00 0.00 2.69
1651 3523 8.923270 AGGTAATTGATTGGAGACTTTTCAAAA 58.077 29.630 0.00 0.00 0.00 2.44
1652 3524 9.710900 GGTAATTGATTGGAGACTTTTCAAAAT 57.289 29.630 0.00 0.00 0.00 1.82
1657 3529 8.690203 TGATTGGAGACTTTTCAAAATAGTCA 57.310 30.769 11.21 0.00 40.53 3.41
1658 3530 9.300681 TGATTGGAGACTTTTCAAAATAGTCAT 57.699 29.630 11.21 0.00 40.53 3.06
1659 3531 9.565213 GATTGGAGACTTTTCAAAATAGTCATG 57.435 33.333 11.21 0.00 40.53 3.07
1660 3532 6.913170 TGGAGACTTTTCAAAATAGTCATGC 58.087 36.000 11.21 4.71 40.53 4.06
1661 3533 6.716628 TGGAGACTTTTCAAAATAGTCATGCT 59.283 34.615 11.21 0.00 40.53 3.79
1662 3534 7.025963 GGAGACTTTTCAAAATAGTCATGCTG 58.974 38.462 11.21 0.00 40.53 4.41
1663 3535 7.308830 GGAGACTTTTCAAAATAGTCATGCTGT 60.309 37.037 11.21 0.00 40.53 4.40
1664 3536 7.365741 AGACTTTTCAAAATAGTCATGCTGTG 58.634 34.615 11.21 0.00 40.53 3.66
1665 3537 7.229306 AGACTTTTCAAAATAGTCATGCTGTGA 59.771 33.333 11.21 0.00 40.53 3.58
1671 3543 3.413861 GTCATGCTGTGACGCGCA 61.414 61.111 5.73 1.71 46.99 6.09
1672 3544 2.664518 TCATGCTGTGACGCGCAA 60.665 55.556 5.73 0.00 39.89 4.85
1673 3545 2.500369 CATGCTGTGACGCGCAAC 60.500 61.111 5.73 5.22 39.89 4.17
1674 3546 2.971959 ATGCTGTGACGCGCAACA 60.972 55.556 5.73 10.46 39.89 3.33
1675 3547 3.240606 ATGCTGTGACGCGCAACAC 62.241 57.895 21.58 21.58 39.89 3.32
1676 3548 4.666532 GCTGTGACGCGCAACACC 62.667 66.667 24.07 9.47 36.35 4.16
1677 3549 3.268603 CTGTGACGCGCAACACCA 61.269 61.111 24.07 14.59 36.35 4.17
1678 3550 2.818487 CTGTGACGCGCAACACCAA 61.818 57.895 24.07 11.01 36.35 3.67
1679 3551 2.052237 GTGACGCGCAACACCAAG 60.052 61.111 18.90 0.00 0.00 3.61
1680 3552 3.947841 TGACGCGCAACACCAAGC 61.948 61.111 5.73 0.00 0.00 4.01
1681 3553 3.947841 GACGCGCAACACCAAGCA 61.948 61.111 5.73 0.00 0.00 3.91
1682 3554 3.462333 GACGCGCAACACCAAGCAA 62.462 57.895 5.73 0.00 0.00 3.91
1683 3555 2.050168 CGCGCAACACCAAGCAAT 60.050 55.556 8.75 0.00 0.00 3.56
1684 3556 1.208870 CGCGCAACACCAAGCAATA 59.791 52.632 8.75 0.00 0.00 1.90
1685 3557 0.794229 CGCGCAACACCAAGCAATAG 60.794 55.000 8.75 0.00 0.00 1.73
1686 3558 0.240945 GCGCAACACCAAGCAATAGT 59.759 50.000 0.30 0.00 0.00 2.12
1687 3559 1.335872 GCGCAACACCAAGCAATAGTT 60.336 47.619 0.30 0.00 0.00 2.24
1688 3560 2.862140 GCGCAACACCAAGCAATAGTTT 60.862 45.455 0.30 0.00 0.00 2.66
1689 3561 2.725723 CGCAACACCAAGCAATAGTTTG 59.274 45.455 0.00 0.00 35.92 2.93
1690 3562 3.549827 CGCAACACCAAGCAATAGTTTGA 60.550 43.478 0.00 0.00 38.10 2.69
1691 3563 4.559153 GCAACACCAAGCAATAGTTTGAT 58.441 39.130 0.00 0.00 38.10 2.57
1692 3564 4.386652 GCAACACCAAGCAATAGTTTGATG 59.613 41.667 0.00 0.00 38.10 3.07
1693 3565 4.178545 ACACCAAGCAATAGTTTGATGC 57.821 40.909 0.00 0.00 33.11 3.91
1694 3566 3.173599 CACCAAGCAATAGTTTGATGCG 58.826 45.455 0.00 0.00 44.60 4.73
1695 3567 2.819608 ACCAAGCAATAGTTTGATGCGT 59.180 40.909 0.00 0.00 44.60 5.24
1696 3568 4.006989 ACCAAGCAATAGTTTGATGCGTA 58.993 39.130 0.00 0.00 44.60 4.42
1697 3569 4.094887 ACCAAGCAATAGTTTGATGCGTAG 59.905 41.667 0.00 0.00 44.60 3.51
1698 3570 4.332543 CCAAGCAATAGTTTGATGCGTAGA 59.667 41.667 0.00 0.00 44.60 2.59
1699 3571 5.163764 CCAAGCAATAGTTTGATGCGTAGAA 60.164 40.000 0.00 0.00 44.60 2.10
1700 3572 6.458751 CCAAGCAATAGTTTGATGCGTAGAAT 60.459 38.462 0.00 0.00 44.60 2.40
1701 3573 6.292389 AGCAATAGTTTGATGCGTAGAATC 57.708 37.500 0.00 0.00 44.60 2.52
1702 3574 5.817296 AGCAATAGTTTGATGCGTAGAATCA 59.183 36.000 0.00 0.00 44.60 2.57
1703 3575 6.484643 AGCAATAGTTTGATGCGTAGAATCAT 59.515 34.615 0.00 0.00 44.60 2.45
1704 3576 6.794158 GCAATAGTTTGATGCGTAGAATCATC 59.206 38.462 0.00 0.00 39.49 2.92
1705 3577 7.518848 GCAATAGTTTGATGCGTAGAATCATCA 60.519 37.037 1.25 1.25 44.99 3.07
1711 3583 6.094193 TGATGCGTAGAATCATCAAGATCT 57.906 37.500 2.79 0.00 44.08 2.75
1712 3584 7.219484 TGATGCGTAGAATCATCAAGATCTA 57.781 36.000 0.00 0.00 44.08 1.98
1713 3585 7.087007 TGATGCGTAGAATCATCAAGATCTAC 58.913 38.462 0.00 0.00 44.08 2.59
1717 3589 7.916128 CGTAGAATCATCAAGATCTACGTTT 57.084 36.000 20.16 0.00 44.55 3.60
1718 3590 8.341477 CGTAGAATCATCAAGATCTACGTTTT 57.659 34.615 20.16 0.00 44.55 2.43
1719 3591 8.808529 CGTAGAATCATCAAGATCTACGTTTTT 58.191 33.333 20.16 0.00 44.55 1.94
1757 3629 5.801350 ATCCAAATGATAAGTGTCACACG 57.199 39.130 1.22 0.00 39.64 4.49
1758 3630 4.637276 TCCAAATGATAAGTGTCACACGT 58.363 39.130 1.22 1.06 39.64 4.49
1759 3631 4.450757 TCCAAATGATAAGTGTCACACGTG 59.549 41.667 15.48 15.48 39.64 4.49
1760 3632 4.213270 CCAAATGATAAGTGTCACACGTGT 59.787 41.667 17.22 17.22 39.64 4.49
1761 3633 4.990543 AATGATAAGTGTCACACGTGTG 57.009 40.909 37.04 37.04 46.91 3.82
1762 3634 2.749776 TGATAAGTGTCACACGTGTGG 58.250 47.619 39.88 25.18 45.65 4.17
1777 3649 3.405170 GTGTGGCACGAATTATTCTGG 57.595 47.619 13.77 0.00 0.00 3.86
1778 3650 2.747446 GTGTGGCACGAATTATTCTGGT 59.253 45.455 13.77 0.00 0.00 4.00
1779 3651 3.006940 TGTGGCACGAATTATTCTGGTC 58.993 45.455 13.77 0.00 0.00 4.02
1780 3652 2.354821 GTGGCACGAATTATTCTGGTCC 59.645 50.000 0.00 0.56 0.00 4.46
1781 3653 2.238646 TGGCACGAATTATTCTGGTCCT 59.761 45.455 3.34 0.00 0.00 3.85
1782 3654 2.614057 GGCACGAATTATTCTGGTCCTG 59.386 50.000 3.34 0.00 0.00 3.86
1783 3655 3.531538 GCACGAATTATTCTGGTCCTGA 58.468 45.455 3.34 0.00 0.00 3.86
1784 3656 3.309954 GCACGAATTATTCTGGTCCTGAC 59.690 47.826 3.34 0.00 0.00 3.51
1785 3657 3.551890 CACGAATTATTCTGGTCCTGACG 59.448 47.826 3.34 0.79 0.00 4.35
1786 3658 3.446161 ACGAATTATTCTGGTCCTGACGA 59.554 43.478 10.01 0.00 0.00 4.20
1787 3659 4.099573 ACGAATTATTCTGGTCCTGACGAT 59.900 41.667 10.01 1.07 0.00 3.73
1788 3660 5.050490 CGAATTATTCTGGTCCTGACGATT 58.950 41.667 3.34 0.01 0.00 3.34
1789 3661 5.523916 CGAATTATTCTGGTCCTGACGATTT 59.476 40.000 3.34 0.00 0.00 2.17
1790 3662 6.037172 CGAATTATTCTGGTCCTGACGATTTT 59.963 38.462 3.34 0.00 0.00 1.82
1791 3663 7.414098 CGAATTATTCTGGTCCTGACGATTTTT 60.414 37.037 3.34 0.00 0.00 1.94
1792 3664 8.801882 AATTATTCTGGTCCTGACGATTTTTA 57.198 30.769 0.00 0.00 0.00 1.52
1793 3665 7.605410 TTATTCTGGTCCTGACGATTTTTAC 57.395 36.000 0.00 0.00 0.00 2.01
1794 3666 4.610605 TCTGGTCCTGACGATTTTTACA 57.389 40.909 0.00 0.00 0.00 2.41
1795 3667 4.963373 TCTGGTCCTGACGATTTTTACAA 58.037 39.130 0.00 0.00 0.00 2.41
1796 3668 4.753107 TCTGGTCCTGACGATTTTTACAAC 59.247 41.667 0.00 0.00 0.00 3.32
1797 3669 4.710324 TGGTCCTGACGATTTTTACAACT 58.290 39.130 0.00 0.00 0.00 3.16
1798 3670 5.856156 TGGTCCTGACGATTTTTACAACTA 58.144 37.500 0.00 0.00 0.00 2.24
1799 3671 6.289834 TGGTCCTGACGATTTTTACAACTAA 58.710 36.000 0.00 0.00 0.00 2.24
1800 3672 6.766944 TGGTCCTGACGATTTTTACAACTAAA 59.233 34.615 0.00 0.00 0.00 1.85
1801 3673 7.073883 GGTCCTGACGATTTTTACAACTAAAC 58.926 38.462 0.00 0.00 0.00 2.01
1802 3674 7.041576 GGTCCTGACGATTTTTACAACTAAACT 60.042 37.037 0.00 0.00 0.00 2.66
1803 3675 8.340443 GTCCTGACGATTTTTACAACTAAACTT 58.660 33.333 0.00 0.00 0.00 2.66
1804 3676 8.339714 TCCTGACGATTTTTACAACTAAACTTG 58.660 33.333 0.00 0.00 0.00 3.16
1805 3677 7.112984 CCTGACGATTTTTACAACTAAACTTGC 59.887 37.037 0.00 0.00 0.00 4.01
1806 3678 6.913673 TGACGATTTTTACAACTAAACTTGCC 59.086 34.615 0.00 0.00 0.00 4.52
1807 3679 6.797454 ACGATTTTTACAACTAAACTTGCCA 58.203 32.000 0.00 0.00 0.00 4.92
1808 3680 7.430441 ACGATTTTTACAACTAAACTTGCCAT 58.570 30.769 0.00 0.00 0.00 4.40
1809 3681 8.569641 ACGATTTTTACAACTAAACTTGCCATA 58.430 29.630 0.00 0.00 0.00 2.74
1810 3682 8.846607 CGATTTTTACAACTAAACTTGCCATAC 58.153 33.333 0.00 0.00 0.00 2.39
1811 3683 8.736751 ATTTTTACAACTAAACTTGCCATACG 57.263 30.769 0.00 0.00 0.00 3.06
1812 3684 7.493743 TTTTACAACTAAACTTGCCATACGA 57.506 32.000 0.00 0.00 0.00 3.43
1813 3685 7.493743 TTTACAACTAAACTTGCCATACGAA 57.506 32.000 0.00 0.00 0.00 3.85
1814 3686 7.493743 TTACAACTAAACTTGCCATACGAAA 57.506 32.000 0.00 0.00 0.00 3.46
1815 3687 6.380095 ACAACTAAACTTGCCATACGAAAA 57.620 33.333 0.00 0.00 0.00 2.29
1816 3688 6.435428 ACAACTAAACTTGCCATACGAAAAG 58.565 36.000 0.00 0.00 0.00 2.27
1817 3689 6.261381 ACAACTAAACTTGCCATACGAAAAGA 59.739 34.615 0.00 0.00 0.00 2.52
1818 3690 6.870971 ACTAAACTTGCCATACGAAAAGAA 57.129 33.333 0.00 0.00 0.00 2.52
1819 3691 7.266922 ACTAAACTTGCCATACGAAAAGAAA 57.733 32.000 0.00 0.00 0.00 2.52
1820 3692 7.708998 ACTAAACTTGCCATACGAAAAGAAAA 58.291 30.769 0.00 0.00 0.00 2.29
1821 3693 8.192110 ACTAAACTTGCCATACGAAAAGAAAAA 58.808 29.630 0.00 0.00 0.00 1.94
1857 3729 8.862550 AAAACTGAAACTTGCTATCTGAAAAG 57.137 30.769 0.00 0.00 0.00 2.27
1858 3730 7.807977 AACTGAAACTTGCTATCTGAAAAGA 57.192 32.000 0.00 0.00 0.00 2.52
1859 3731 7.807977 ACTGAAACTTGCTATCTGAAAAGAA 57.192 32.000 0.00 0.00 0.00 2.52
1860 3732 8.225603 ACTGAAACTTGCTATCTGAAAAGAAA 57.774 30.769 0.00 0.00 0.00 2.52
1861 3733 8.348507 ACTGAAACTTGCTATCTGAAAAGAAAG 58.651 33.333 8.75 8.75 34.92 2.62
1862 3734 8.225603 TGAAACTTGCTATCTGAAAAGAAAGT 57.774 30.769 9.75 9.75 42.34 2.66
1864 3736 8.862550 AAACTTGCTATCTGAAAAGAAAGTTG 57.137 30.769 21.20 1.12 46.40 3.16
1865 3737 6.442112 ACTTGCTATCTGAAAAGAAAGTTGC 58.558 36.000 9.75 0.00 38.23 4.17
1866 3738 5.376854 TGCTATCTGAAAAGAAAGTTGCC 57.623 39.130 0.00 0.00 0.00 4.52
1867 3739 4.826733 TGCTATCTGAAAAGAAAGTTGCCA 59.173 37.500 0.00 0.00 0.00 4.92
1868 3740 5.477984 TGCTATCTGAAAAGAAAGTTGCCAT 59.522 36.000 0.00 0.00 0.00 4.40
1869 3741 5.803967 GCTATCTGAAAAGAAAGTTGCCATG 59.196 40.000 0.00 0.00 0.00 3.66
1870 3742 3.981211 TCTGAAAAGAAAGTTGCCATGC 58.019 40.909 0.00 0.00 0.00 4.06
1871 3743 3.638160 TCTGAAAAGAAAGTTGCCATGCT 59.362 39.130 0.00 0.00 0.00 3.79
1872 3744 4.099881 TCTGAAAAGAAAGTTGCCATGCTT 59.900 37.500 0.00 0.00 0.00 3.91
1873 3745 4.121317 TGAAAAGAAAGTTGCCATGCTTG 58.879 39.130 0.00 0.00 0.00 4.01
1874 3746 4.141981 TGAAAAGAAAGTTGCCATGCTTGA 60.142 37.500 0.22 0.00 0.00 3.02
1875 3747 3.375782 AAGAAAGTTGCCATGCTTGAC 57.624 42.857 0.22 0.00 0.00 3.18
1876 3748 1.615392 AGAAAGTTGCCATGCTTGACC 59.385 47.619 0.22 0.00 0.00 4.02
1877 3749 1.340889 GAAAGTTGCCATGCTTGACCA 59.659 47.619 0.22 0.00 0.00 4.02
1878 3750 0.675633 AAGTTGCCATGCTTGACCAC 59.324 50.000 0.22 0.00 0.00 4.16
1879 3751 0.178981 AGTTGCCATGCTTGACCACT 60.179 50.000 0.22 0.00 0.00 4.00
1880 3752 1.073763 AGTTGCCATGCTTGACCACTA 59.926 47.619 0.22 0.00 0.00 2.74
1881 3753 1.200020 GTTGCCATGCTTGACCACTAC 59.800 52.381 0.22 0.00 0.00 2.73
1882 3754 0.399833 TGCCATGCTTGACCACTACA 59.600 50.000 0.22 0.00 0.00 2.74
1883 3755 1.202867 TGCCATGCTTGACCACTACAA 60.203 47.619 0.22 0.00 0.00 2.41
1884 3756 2.094675 GCCATGCTTGACCACTACAAT 58.905 47.619 0.22 0.00 0.00 2.71
1885 3757 2.493278 GCCATGCTTGACCACTACAATT 59.507 45.455 0.22 0.00 0.00 2.32
1886 3758 3.674138 GCCATGCTTGACCACTACAATTG 60.674 47.826 3.24 3.24 0.00 2.32
1887 3759 3.504863 CATGCTTGACCACTACAATTGC 58.495 45.455 5.05 0.00 0.00 3.56
1888 3760 1.885887 TGCTTGACCACTACAATTGCC 59.114 47.619 5.05 0.00 0.00 4.52
1889 3761 1.885887 GCTTGACCACTACAATTGCCA 59.114 47.619 5.05 0.00 0.00 4.92
1890 3762 2.493278 GCTTGACCACTACAATTGCCAT 59.507 45.455 5.05 0.00 0.00 4.40
1891 3763 3.428045 GCTTGACCACTACAATTGCCATC 60.428 47.826 5.05 0.00 0.00 3.51
1892 3764 2.722094 TGACCACTACAATTGCCATCC 58.278 47.619 5.05 0.00 0.00 3.51
1893 3765 2.308570 TGACCACTACAATTGCCATCCT 59.691 45.455 5.05 0.00 0.00 3.24
1894 3766 2.945668 GACCACTACAATTGCCATCCTC 59.054 50.000 5.05 0.00 0.00 3.71
1895 3767 1.942657 CCACTACAATTGCCATCCTCG 59.057 52.381 5.05 0.00 0.00 4.63
1896 3768 1.331756 CACTACAATTGCCATCCTCGC 59.668 52.381 5.05 0.00 0.00 5.03
1897 3769 0.583438 CTACAATTGCCATCCTCGCG 59.417 55.000 5.05 0.00 0.00 5.87
1898 3770 0.107897 TACAATTGCCATCCTCGCGT 60.108 50.000 5.77 0.00 0.00 6.01
1899 3771 1.353103 CAATTGCCATCCTCGCGTC 59.647 57.895 5.77 0.00 0.00 5.19
1900 3772 1.078497 AATTGCCATCCTCGCGTCA 60.078 52.632 5.77 0.00 0.00 4.35
1901 3773 1.369091 AATTGCCATCCTCGCGTCAC 61.369 55.000 5.77 0.00 0.00 3.67
1902 3774 2.244117 ATTGCCATCCTCGCGTCACT 62.244 55.000 5.77 0.00 0.00 3.41
1903 3775 2.887568 GCCATCCTCGCGTCACTG 60.888 66.667 5.77 0.00 0.00 3.66
1904 3776 2.885113 CCATCCTCGCGTCACTGA 59.115 61.111 5.77 0.00 0.00 3.41
1905 3777 1.215382 CCATCCTCGCGTCACTGAA 59.785 57.895 5.77 0.00 0.00 3.02
1906 3778 1.078759 CCATCCTCGCGTCACTGAAC 61.079 60.000 5.77 0.00 0.00 3.18
1907 3779 0.109086 CATCCTCGCGTCACTGAACT 60.109 55.000 5.77 0.00 0.00 3.01
1908 3780 0.171455 ATCCTCGCGTCACTGAACTC 59.829 55.000 5.77 0.00 0.00 3.01
1909 3781 1.444553 CCTCGCGTCACTGAACTCC 60.445 63.158 5.77 0.00 0.00 3.85
1910 3782 1.285950 CTCGCGTCACTGAACTCCA 59.714 57.895 5.77 0.00 0.00 3.86
1911 3783 0.109086 CTCGCGTCACTGAACTCCAT 60.109 55.000 5.77 0.00 0.00 3.41
1912 3784 1.132453 CTCGCGTCACTGAACTCCATA 59.868 52.381 5.77 0.00 0.00 2.74
1913 3785 1.542472 TCGCGTCACTGAACTCCATAA 59.458 47.619 5.77 0.00 0.00 1.90
1914 3786 1.920574 CGCGTCACTGAACTCCATAAG 59.079 52.381 0.00 0.00 0.00 1.73
1915 3787 2.415491 CGCGTCACTGAACTCCATAAGA 60.415 50.000 0.00 0.00 0.00 2.10
1916 3788 3.585862 GCGTCACTGAACTCCATAAGAA 58.414 45.455 0.00 0.00 0.00 2.52
1917 3789 3.994392 GCGTCACTGAACTCCATAAGAAA 59.006 43.478 0.00 0.00 0.00 2.52
1918 3790 4.143094 GCGTCACTGAACTCCATAAGAAAC 60.143 45.833 0.00 0.00 0.00 2.78
1922 3794 5.694910 TCACTGAACTCCATAAGAAACGTTC 59.305 40.000 0.00 0.00 33.34 3.95
1939 3811 1.069227 GTTCGGAGTTGCCATGTGTTC 60.069 52.381 0.00 0.00 35.94 3.18
2007 3879 5.192522 ACATCCAATGGTCCTAGAGAAATGT 59.807 40.000 0.00 0.00 33.60 2.71
2036 3908 5.265989 CCTCCCCTAATGTCTCCTATACTC 58.734 50.000 0.00 0.00 0.00 2.59
2089 3963 9.924650 AGTACTTTTTAATGTCATCGAGTACTT 57.075 29.630 0.00 0.00 43.38 2.24
2104 3978 5.690409 TCGAGTACTTCTGCTTTTTACACTG 59.310 40.000 0.00 0.00 0.00 3.66
2134 4015 4.514066 TCTCCTCTTAACAAAAAGGCGAAC 59.486 41.667 0.00 0.00 0.00 3.95
2135 4016 3.566742 TCCTCTTAACAAAAAGGCGAACC 59.433 43.478 0.00 0.00 0.00 3.62
2136 4017 3.551551 CTCTTAACAAAAAGGCGAACCG 58.448 45.455 0.00 0.00 42.76 4.44
2137 4018 2.944349 TCTTAACAAAAAGGCGAACCGT 59.056 40.909 0.00 0.00 42.76 4.83
2138 4019 2.759538 TAACAAAAAGGCGAACCGTG 57.240 45.000 0.00 0.00 42.76 4.94
2139 4020 0.526739 AACAAAAAGGCGAACCGTGC 60.527 50.000 0.00 0.00 42.76 5.34
2140 4021 1.064946 CAAAAAGGCGAACCGTGCA 59.935 52.632 0.00 0.00 42.76 4.57
2141 4022 0.934436 CAAAAAGGCGAACCGTGCAG 60.934 55.000 0.00 0.00 42.76 4.41
2234 4115 7.177216 ACATCTTAATTTGCTCTGGAATTGTCA 59.823 33.333 0.00 0.00 0.00 3.58
2240 4121 3.603532 TGCTCTGGAATTGTCAGACATC 58.396 45.455 3.45 0.00 36.46 3.06
2247 4128 4.819088 TGGAATTGTCAGACATCGTTTCAA 59.181 37.500 3.45 0.00 0.00 2.69
2258 4139 7.325821 TCAGACATCGTTTCAAATTTAACATGC 59.674 33.333 0.00 4.82 0.00 4.06
2282 4163 7.173218 TGCTATACGATGATCGATATATGCAGA 59.827 37.037 22.88 0.00 43.74 4.26
2379 4264 4.773323 ACATGCTCTTTTGTAGCTTTCC 57.227 40.909 0.00 0.00 40.73 3.13
2481 4371 6.713762 TTGGACATCAAGTGAACAATTTCT 57.286 33.333 0.00 0.00 32.36 2.52
2485 4375 7.492020 TGGACATCAAGTGAACAATTTCTTTTG 59.508 33.333 0.00 0.00 32.36 2.44
3447 5473 1.301401 GGCCATCCACGCGCTTATA 60.301 57.895 5.73 0.00 0.00 0.98
3519 5547 7.816031 TGCATCAAACCAGTACTTAGTACTTAC 59.184 37.037 21.03 2.49 45.68 2.34
3600 5643 1.550976 GTTTGTGGATCGAGGAGGAGT 59.449 52.381 0.00 0.00 0.00 3.85
3601 5644 2.758979 GTTTGTGGATCGAGGAGGAGTA 59.241 50.000 0.00 0.00 0.00 2.59
3602 5645 2.054232 TGTGGATCGAGGAGGAGTAC 57.946 55.000 0.00 0.00 0.00 2.73
3603 5646 0.945813 GTGGATCGAGGAGGAGTACG 59.054 60.000 0.00 0.00 0.00 3.67
3604 5647 0.545171 TGGATCGAGGAGGAGTACGT 59.455 55.000 0.00 0.00 0.00 3.57
3605 5648 1.764723 TGGATCGAGGAGGAGTACGTA 59.235 52.381 0.00 0.00 0.00 3.57
3606 5649 2.224233 TGGATCGAGGAGGAGTACGTAG 60.224 54.545 0.00 0.00 0.00 3.51
3608 5651 3.006323 GGATCGAGGAGGAGTACGTAGTA 59.994 52.174 2.11 0.00 45.11 1.82
3765 5850 4.285149 GCATCATGGCGCGTCGAC 62.285 66.667 6.09 5.18 34.27 4.20
3766 5851 2.583319 CATCATGGCGCGTCGACT 60.583 61.111 14.70 0.00 35.04 4.18
3767 5852 1.299089 CATCATGGCGCGTCGACTA 60.299 57.895 14.70 0.00 35.04 2.59
3768 5853 1.008424 ATCATGGCGCGTCGACTAG 60.008 57.895 14.70 8.35 35.04 2.57
3778 6721 3.241553 GCGCGTCGACTAGATATATACGA 59.758 47.826 14.70 0.00 0.00 3.43
3797 6740 1.795286 GACAGCAAAACAGACCTCGAG 59.205 52.381 5.13 5.13 0.00 4.04
3798 6741 1.139058 ACAGCAAAACAGACCTCGAGT 59.861 47.619 12.31 0.00 0.00 4.18
3799 6742 1.795286 CAGCAAAACAGACCTCGAGTC 59.205 52.381 12.31 9.11 46.71 3.36
3946 6964 0.694444 ATAGGCTCCCCGAACCACAT 60.694 55.000 0.00 0.00 35.76 3.21
4023 7041 0.676466 CCGTGCTCCATGGCAAGTTA 60.676 55.000 6.96 0.00 44.18 2.24
4032 7050 1.468520 CATGGCAAGTTAGTGGTTCCG 59.531 52.381 0.00 0.00 0.00 4.30
4033 7051 0.250553 TGGCAAGTTAGTGGTTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
4034 7052 1.583495 GGCAAGTTAGTGGTTCCGGC 61.583 60.000 0.00 0.00 0.00 6.13
4035 7053 1.908066 GCAAGTTAGTGGTTCCGGCG 61.908 60.000 0.00 0.00 0.00 6.46
4358 7388 2.182827 CATCTGTGGTCTCTTCCTGGA 58.817 52.381 0.00 0.00 0.00 3.86
4361 7391 1.216710 GTGGTCTCTTCCTGGAGCG 59.783 63.158 0.00 0.00 33.70 5.03
4377 7407 1.214589 GCGACCGGTTTGCTCTAGA 59.785 57.895 21.55 0.00 0.00 2.43
4401 7431 2.071540 TCGAACACGTACGTCTCATCT 58.928 47.619 19.94 0.00 0.00 2.90
4402 7432 2.093310 TCGAACACGTACGTCTCATCTC 59.907 50.000 19.94 7.74 0.00 2.75
4410 7440 3.623960 CGTACGTCTCATCTCCTTTCTCT 59.376 47.826 7.22 0.00 0.00 3.10
4411 7441 4.495019 CGTACGTCTCATCTCCTTTCTCTG 60.495 50.000 7.22 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.388599 AATCCCCATTAAACCTCCTAGTG 57.611 43.478 0.00 0.00 0.00 2.74
13 14 5.491323 TTTGGACAAATCCCCATTAAACC 57.509 39.130 0.00 0.00 45.59 3.27
20 21 5.151454 ACAACTATTTTGGACAAATCCCCA 58.849 37.500 0.00 0.00 45.59 4.96
21 22 5.738619 ACAACTATTTTGGACAAATCCCC 57.261 39.130 0.00 0.00 45.59 4.81
78 79 9.904198 TGATTTCCTTCATCAATCAATGTAGTA 57.096 29.630 0.00 0.00 34.66 1.82
128 129 0.609151 TTTGGTCCGGACTATTGCGA 59.391 50.000 32.52 13.65 39.29 5.10
130 131 2.396590 TCTTTGGTCCGGACTATTGC 57.603 50.000 32.52 16.93 0.00 3.56
163 164 6.965500 GCACTGATGTTGATTCTACTTTGATG 59.035 38.462 0.17 0.00 0.00 3.07
215 216 6.455360 TCATAAAAAGATCCTACGTACCGT 57.545 37.500 0.00 0.00 44.35 4.83
220 221 5.680619 TGCCATCATAAAAAGATCCTACGT 58.319 37.500 0.00 0.00 0.00 3.57
221 222 6.652481 AGATGCCATCATAAAAAGATCCTACG 59.348 38.462 7.56 0.00 31.96 3.51
223 224 8.103305 GGTAGATGCCATCATAAAAAGATCCTA 58.897 37.037 7.56 0.00 31.96 2.94
296 298 7.213178 AGGAGGTCCTATTCAAATGTTACAT 57.787 36.000 0.00 0.00 46.48 2.29
375 377 2.099141 TGATACAACTGCAGTGAGCC 57.901 50.000 22.49 9.63 44.83 4.70
542 549 1.608025 CCGGTAACTTGCAGAAGCTGA 60.608 52.381 0.00 0.00 42.74 4.26
561 568 0.532115 GGTTGCAACATGGATCCACC 59.468 55.000 29.55 7.35 39.54 4.61
706 728 4.627611 ATGATGTGCTGATTTTTCCTCG 57.372 40.909 0.00 0.00 0.00 4.63
721 746 5.601662 ACATTGCTAGCTTACGTATGATGT 58.398 37.500 17.23 8.52 0.00 3.06
722 747 6.530913 AACATTGCTAGCTTACGTATGATG 57.469 37.500 17.23 7.98 0.00 3.07
753 778 4.345257 AGTTTGAGTAGGCATCCACGATAT 59.655 41.667 0.00 0.00 0.00 1.63
929 965 5.012664 TCTGTCAAGGTAATTAAGCTGGTGA 59.987 40.000 0.00 0.00 35.65 4.02
946 982 5.527214 CACAAGACCTAACAATGTCTGTCAA 59.473 40.000 10.86 0.00 40.84 3.18
1101 1137 3.533606 ATATCAGCAACGCAGAAGTCT 57.466 42.857 0.00 0.00 0.00 3.24
1349 2749 6.697019 GTGATAGCTGACTTTTTGCTCAAAAA 59.303 34.615 16.65 16.65 44.98 1.94
1350 2750 6.183360 TGTGATAGCTGACTTTTTGCTCAAAA 60.183 34.615 0.00 3.86 38.40 2.44
1351 2751 5.299028 TGTGATAGCTGACTTTTTGCTCAAA 59.701 36.000 0.00 0.00 38.15 2.69
1352 2752 4.821260 TGTGATAGCTGACTTTTTGCTCAA 59.179 37.500 0.00 0.00 38.15 3.02
1354 2754 5.362556 TTGTGATAGCTGACTTTTTGCTC 57.637 39.130 0.00 0.00 38.15 4.26
1357 2757 4.153986 CGCTTGTGATAGCTGACTTTTTG 58.846 43.478 0.00 0.00 39.03 2.44
1358 2758 3.815401 ACGCTTGTGATAGCTGACTTTTT 59.185 39.130 0.00 0.00 39.03 1.94
1417 3281 2.038295 TGGGCCGCTCAAATCAAAATTT 59.962 40.909 0.00 0.00 35.43 1.82
1433 3297 2.101415 GCTGGATGAAAAATACTGGGCC 59.899 50.000 0.00 0.00 0.00 5.80
1491 3356 9.612620 GTATAATTAGTGGCATTATTTCTGCAC 57.387 33.333 0.00 0.00 41.47 4.57
1506 3371 9.503399 GGTCTTTTAGGGGATGTATAATTAGTG 57.497 37.037 0.00 0.00 0.00 2.74
1601 3473 8.202137 CCTGAAAGCTCCAAATTGATTATGAAT 58.798 33.333 0.00 0.00 0.00 2.57
1612 3484 7.325694 CAATCAATTACCTGAAAGCTCCAAAT 58.674 34.615 0.00 0.00 0.00 2.32
1613 3485 6.295236 CCAATCAATTACCTGAAAGCTCCAAA 60.295 38.462 0.00 0.00 0.00 3.28
1614 3486 5.185635 CCAATCAATTACCTGAAAGCTCCAA 59.814 40.000 0.00 0.00 0.00 3.53
1615 3487 4.706476 CCAATCAATTACCTGAAAGCTCCA 59.294 41.667 0.00 0.00 0.00 3.86
1616 3488 4.949856 TCCAATCAATTACCTGAAAGCTCC 59.050 41.667 0.00 0.00 0.00 4.70
1617 3489 5.882557 TCTCCAATCAATTACCTGAAAGCTC 59.117 40.000 0.00 0.00 0.00 4.09
1618 3490 5.649831 GTCTCCAATCAATTACCTGAAAGCT 59.350 40.000 0.00 0.00 0.00 3.74
1619 3491 5.649831 AGTCTCCAATCAATTACCTGAAAGC 59.350 40.000 0.00 0.00 0.00 3.51
1620 3492 7.693969 AAGTCTCCAATCAATTACCTGAAAG 57.306 36.000 0.00 0.00 0.00 2.62
1621 3493 8.477419 AAAAGTCTCCAATCAATTACCTGAAA 57.523 30.769 0.00 0.00 0.00 2.69
1622 3494 7.723616 TGAAAAGTCTCCAATCAATTACCTGAA 59.276 33.333 0.00 0.00 0.00 3.02
1623 3495 7.230747 TGAAAAGTCTCCAATCAATTACCTGA 58.769 34.615 0.00 0.00 0.00 3.86
1624 3496 7.452880 TGAAAAGTCTCCAATCAATTACCTG 57.547 36.000 0.00 0.00 0.00 4.00
1625 3497 8.477419 TTTGAAAAGTCTCCAATCAATTACCT 57.523 30.769 0.00 0.00 30.81 3.08
1626 3498 9.710900 ATTTTGAAAAGTCTCCAATCAATTACC 57.289 29.630 0.00 0.00 30.81 2.85
1631 3503 9.130661 TGACTATTTTGAAAAGTCTCCAATCAA 57.869 29.630 10.17 0.00 40.25 2.57
1632 3504 8.690203 TGACTATTTTGAAAAGTCTCCAATCA 57.310 30.769 10.17 0.00 40.25 2.57
1633 3505 9.565213 CATGACTATTTTGAAAAGTCTCCAATC 57.435 33.333 10.17 0.00 40.25 2.67
1634 3506 8.031277 GCATGACTATTTTGAAAAGTCTCCAAT 58.969 33.333 10.17 0.00 40.25 3.16
1635 3507 7.231317 AGCATGACTATTTTGAAAAGTCTCCAA 59.769 33.333 10.17 0.00 40.25 3.53
1636 3508 6.716628 AGCATGACTATTTTGAAAAGTCTCCA 59.283 34.615 10.17 0.04 40.25 3.86
1637 3509 7.025963 CAGCATGACTATTTTGAAAAGTCTCC 58.974 38.462 10.17 1.28 39.69 3.71
1638 3510 7.536622 CACAGCATGACTATTTTGAAAAGTCTC 59.463 37.037 10.17 0.00 39.69 3.36
1639 3511 7.229306 TCACAGCATGACTATTTTGAAAAGTCT 59.771 33.333 10.17 0.00 39.69 3.24
1640 3512 7.362662 TCACAGCATGACTATTTTGAAAAGTC 58.637 34.615 0.00 3.43 39.69 3.01
1641 3513 7.275888 TCACAGCATGACTATTTTGAAAAGT 57.724 32.000 0.00 0.00 39.69 2.66
1655 3527 2.664518 TTGCGCGTCACAGCATGA 60.665 55.556 8.43 0.00 43.42 3.07
1656 3528 2.500369 GTTGCGCGTCACAGCATG 60.500 61.111 8.43 0.00 43.42 4.06
1657 3529 2.971959 TGTTGCGCGTCACAGCAT 60.972 55.556 8.43 0.00 43.42 3.79
1658 3530 3.935872 GTGTTGCGCGTCACAGCA 61.936 61.111 23.23 10.85 42.15 4.41
1659 3531 4.666532 GGTGTTGCGCGTCACAGC 62.667 66.667 27.03 22.39 36.43 4.40
1660 3532 2.700334 CTTGGTGTTGCGCGTCACAG 62.700 60.000 27.03 17.27 36.43 3.66
1661 3533 2.818487 CTTGGTGTTGCGCGTCACA 61.818 57.895 27.03 17.10 36.43 3.58
1662 3534 2.052237 CTTGGTGTTGCGCGTCAC 60.052 61.111 21.10 21.10 0.00 3.67
1663 3535 3.947841 GCTTGGTGTTGCGCGTCA 61.948 61.111 8.43 3.08 0.00 4.35
1664 3536 2.731587 ATTGCTTGGTGTTGCGCGTC 62.732 55.000 8.43 0.00 0.00 5.19
1665 3537 1.511318 TATTGCTTGGTGTTGCGCGT 61.511 50.000 8.43 0.00 0.00 6.01
1666 3538 0.794229 CTATTGCTTGGTGTTGCGCG 60.794 55.000 0.00 0.00 0.00 6.86
1667 3539 0.240945 ACTATTGCTTGGTGTTGCGC 59.759 50.000 0.00 0.00 0.00 6.09
1668 3540 2.704725 AACTATTGCTTGGTGTTGCG 57.295 45.000 0.00 0.00 0.00 4.85
1669 3541 3.976169 TCAAACTATTGCTTGGTGTTGC 58.024 40.909 0.00 0.00 36.45 4.17
1670 3542 4.386652 GCATCAAACTATTGCTTGGTGTTG 59.613 41.667 5.63 0.00 36.28 3.33
1671 3543 4.559153 GCATCAAACTATTGCTTGGTGTT 58.441 39.130 5.63 0.00 36.28 3.32
1672 3544 3.366273 CGCATCAAACTATTGCTTGGTGT 60.366 43.478 5.63 0.00 36.28 4.16
1673 3545 3.173599 CGCATCAAACTATTGCTTGGTG 58.826 45.455 0.00 0.00 36.84 4.17
1674 3546 2.819608 ACGCATCAAACTATTGCTTGGT 59.180 40.909 0.00 0.00 36.45 3.67
1675 3547 3.492421 ACGCATCAAACTATTGCTTGG 57.508 42.857 0.00 0.00 36.45 3.61
1676 3548 5.469373 TCTACGCATCAAACTATTGCTTG 57.531 39.130 0.00 0.00 36.45 4.01
1677 3549 6.316140 TGATTCTACGCATCAAACTATTGCTT 59.684 34.615 0.00 0.00 36.45 3.91
1678 3550 5.817296 TGATTCTACGCATCAAACTATTGCT 59.183 36.000 0.00 0.00 36.45 3.91
1679 3551 6.048073 TGATTCTACGCATCAAACTATTGC 57.952 37.500 0.00 0.00 36.45 3.56
1680 3552 7.854534 TGATGATTCTACGCATCAAACTATTG 58.145 34.615 0.00 0.00 45.55 1.90
1688 3560 6.094193 AGATCTTGATGATTCTACGCATCA 57.906 37.500 0.00 0.00 46.50 3.07
1689 3561 6.250315 CGTAGATCTTGATGATTCTACGCATC 59.750 42.308 15.61 0.00 43.36 3.91
1690 3562 6.089476 CGTAGATCTTGATGATTCTACGCAT 58.911 40.000 15.61 0.00 43.36 4.73
1691 3563 5.452777 CGTAGATCTTGATGATTCTACGCA 58.547 41.667 15.61 0.00 43.36 5.24
1692 3564 5.983790 CGTAGATCTTGATGATTCTACGC 57.016 43.478 15.61 0.00 43.36 4.42
1731 3603 9.040939 CGTGTGACACTTATCATTTGGATAATA 57.959 33.333 14.42 0.00 45.11 0.98
1732 3604 7.552687 ACGTGTGACACTTATCATTTGGATAAT 59.447 33.333 14.42 0.00 45.11 1.28
1733 3605 6.876789 ACGTGTGACACTTATCATTTGGATAA 59.123 34.615 14.42 0.00 44.29 1.75
1734 3606 6.312672 CACGTGTGACACTTATCATTTGGATA 59.687 38.462 14.42 0.00 36.70 2.59
1735 3607 5.122239 CACGTGTGACACTTATCATTTGGAT 59.878 40.000 14.42 0.00 34.58 3.41
1736 3608 4.450757 CACGTGTGACACTTATCATTTGGA 59.549 41.667 14.42 0.00 31.34 3.53
1737 3609 4.213270 ACACGTGTGACACTTATCATTTGG 59.787 41.667 22.71 0.00 31.34 3.28
1738 3610 5.342806 ACACGTGTGACACTTATCATTTG 57.657 39.130 22.71 0.00 31.34 2.32
1757 3629 2.747446 ACCAGAATAATTCGTGCCACAC 59.253 45.455 0.00 0.00 34.02 3.82
1758 3630 3.006940 GACCAGAATAATTCGTGCCACA 58.993 45.455 0.00 0.00 34.02 4.17
1759 3631 2.354821 GGACCAGAATAATTCGTGCCAC 59.645 50.000 0.00 0.00 34.02 5.01
1760 3632 2.238646 AGGACCAGAATAATTCGTGCCA 59.761 45.455 0.00 0.00 34.02 4.92
1761 3633 2.614057 CAGGACCAGAATAATTCGTGCC 59.386 50.000 0.00 0.00 34.02 5.01
1762 3634 3.309954 GTCAGGACCAGAATAATTCGTGC 59.690 47.826 0.00 0.00 34.02 5.34
1763 3635 3.551890 CGTCAGGACCAGAATAATTCGTG 59.448 47.826 0.00 0.00 34.02 4.35
1764 3636 3.446161 TCGTCAGGACCAGAATAATTCGT 59.554 43.478 0.00 0.00 34.02 3.85
1765 3637 4.041740 TCGTCAGGACCAGAATAATTCG 57.958 45.455 0.00 0.00 34.02 3.34
1766 3638 6.927294 AAATCGTCAGGACCAGAATAATTC 57.073 37.500 0.00 0.00 0.00 2.17
1767 3639 7.703058 AAAAATCGTCAGGACCAGAATAATT 57.297 32.000 0.00 0.00 0.00 1.40
1768 3640 7.827236 TGTAAAAATCGTCAGGACCAGAATAAT 59.173 33.333 0.00 0.00 0.00 1.28
1769 3641 7.162761 TGTAAAAATCGTCAGGACCAGAATAA 58.837 34.615 0.00 0.00 0.00 1.40
1770 3642 6.703319 TGTAAAAATCGTCAGGACCAGAATA 58.297 36.000 0.00 0.00 0.00 1.75
1771 3643 5.556915 TGTAAAAATCGTCAGGACCAGAAT 58.443 37.500 0.00 0.00 0.00 2.40
1772 3644 4.963373 TGTAAAAATCGTCAGGACCAGAA 58.037 39.130 0.00 0.00 0.00 3.02
1773 3645 4.610605 TGTAAAAATCGTCAGGACCAGA 57.389 40.909 0.00 0.00 0.00 3.86
1774 3646 4.755123 AGTTGTAAAAATCGTCAGGACCAG 59.245 41.667 0.00 0.00 0.00 4.00
1775 3647 4.710324 AGTTGTAAAAATCGTCAGGACCA 58.290 39.130 0.00 0.00 0.00 4.02
1776 3648 6.790285 TTAGTTGTAAAAATCGTCAGGACC 57.210 37.500 0.00 0.00 0.00 4.46
1777 3649 7.858583 AGTTTAGTTGTAAAAATCGTCAGGAC 58.141 34.615 0.00 0.00 29.74 3.85
1778 3650 8.339714 CAAGTTTAGTTGTAAAAATCGTCAGGA 58.660 33.333 0.00 0.00 29.74 3.86
1779 3651 7.112984 GCAAGTTTAGTTGTAAAAATCGTCAGG 59.887 37.037 0.00 0.00 29.74 3.86
1780 3652 7.112984 GGCAAGTTTAGTTGTAAAAATCGTCAG 59.887 37.037 0.00 0.00 29.74 3.51
1781 3653 6.913673 GGCAAGTTTAGTTGTAAAAATCGTCA 59.086 34.615 0.00 0.00 29.74 4.35
1782 3654 6.913673 TGGCAAGTTTAGTTGTAAAAATCGTC 59.086 34.615 0.00 0.00 29.74 4.20
1783 3655 6.797454 TGGCAAGTTTAGTTGTAAAAATCGT 58.203 32.000 0.00 0.00 29.74 3.73
1784 3656 7.867445 ATGGCAAGTTTAGTTGTAAAAATCG 57.133 32.000 0.00 0.00 29.74 3.34
1785 3657 8.846607 CGTATGGCAAGTTTAGTTGTAAAAATC 58.153 33.333 0.00 0.00 29.74 2.17
1786 3658 8.569641 TCGTATGGCAAGTTTAGTTGTAAAAAT 58.430 29.630 0.00 0.00 29.74 1.82
1787 3659 7.928103 TCGTATGGCAAGTTTAGTTGTAAAAA 58.072 30.769 0.00 0.00 29.74 1.94
1788 3660 7.493743 TCGTATGGCAAGTTTAGTTGTAAAA 57.506 32.000 0.00 0.00 29.74 1.52
1789 3661 7.493743 TTCGTATGGCAAGTTTAGTTGTAAA 57.506 32.000 0.00 0.00 0.00 2.01
1790 3662 7.493743 TTTCGTATGGCAAGTTTAGTTGTAA 57.506 32.000 0.00 0.00 0.00 2.41
1791 3663 7.441760 TCTTTTCGTATGGCAAGTTTAGTTGTA 59.558 33.333 0.00 0.00 0.00 2.41
1792 3664 6.261381 TCTTTTCGTATGGCAAGTTTAGTTGT 59.739 34.615 0.00 0.00 0.00 3.32
1793 3665 6.664515 TCTTTTCGTATGGCAAGTTTAGTTG 58.335 36.000 0.00 0.00 0.00 3.16
1794 3666 6.870971 TCTTTTCGTATGGCAAGTTTAGTT 57.129 33.333 0.00 0.00 0.00 2.24
1795 3667 6.870971 TTCTTTTCGTATGGCAAGTTTAGT 57.129 33.333 0.00 0.00 0.00 2.24
1796 3668 8.568732 TTTTTCTTTTCGTATGGCAAGTTTAG 57.431 30.769 0.00 0.00 0.00 1.85
1831 3703 9.305925 CTTTTCAGATAGCAAGTTTCAGTTTTT 57.694 29.630 0.00 0.00 0.00 1.94
1832 3704 8.686334 TCTTTTCAGATAGCAAGTTTCAGTTTT 58.314 29.630 0.00 0.00 0.00 2.43
1833 3705 8.225603 TCTTTTCAGATAGCAAGTTTCAGTTT 57.774 30.769 0.00 0.00 0.00 2.66
1834 3706 7.807977 TCTTTTCAGATAGCAAGTTTCAGTT 57.192 32.000 0.00 0.00 0.00 3.16
1835 3707 7.807977 TTCTTTTCAGATAGCAAGTTTCAGT 57.192 32.000 0.00 0.00 0.00 3.41
1836 3708 8.348507 ACTTTCTTTTCAGATAGCAAGTTTCAG 58.651 33.333 0.00 0.00 32.70 3.02
1837 3709 8.225603 ACTTTCTTTTCAGATAGCAAGTTTCA 57.774 30.769 0.00 0.00 32.70 2.69
1838 3710 8.962111 CAACTTTCTTTTCAGATAGCAAGTTTC 58.038 33.333 7.61 0.00 35.52 2.78
1839 3711 7.436376 GCAACTTTCTTTTCAGATAGCAAGTTT 59.564 33.333 7.61 0.00 35.52 2.66
1840 3712 6.920210 GCAACTTTCTTTTCAGATAGCAAGTT 59.080 34.615 5.54 5.54 37.05 2.66
1841 3713 6.442112 GCAACTTTCTTTTCAGATAGCAAGT 58.558 36.000 0.00 0.00 32.70 3.16
1842 3714 5.860716 GGCAACTTTCTTTTCAGATAGCAAG 59.139 40.000 0.00 0.00 32.70 4.01
1843 3715 5.301551 TGGCAACTTTCTTTTCAGATAGCAA 59.698 36.000 0.00 0.00 32.70 3.91
1844 3716 4.826733 TGGCAACTTTCTTTTCAGATAGCA 59.173 37.500 0.00 0.00 32.70 3.49
1845 3717 5.376854 TGGCAACTTTCTTTTCAGATAGC 57.623 39.130 0.00 0.00 32.70 2.97
1846 3718 5.803967 GCATGGCAACTTTCTTTTCAGATAG 59.196 40.000 0.00 0.00 34.96 2.08
1847 3719 5.477984 AGCATGGCAACTTTCTTTTCAGATA 59.522 36.000 0.00 0.00 37.61 1.98
1848 3720 4.282703 AGCATGGCAACTTTCTTTTCAGAT 59.717 37.500 0.00 0.00 37.61 2.90
1849 3721 3.638160 AGCATGGCAACTTTCTTTTCAGA 59.362 39.130 0.00 0.00 37.61 3.27
1850 3722 3.986277 AGCATGGCAACTTTCTTTTCAG 58.014 40.909 0.00 0.00 37.61 3.02
1851 3723 4.121317 CAAGCATGGCAACTTTCTTTTCA 58.879 39.130 3.61 0.00 37.61 2.69
1852 3724 4.209911 GTCAAGCATGGCAACTTTCTTTTC 59.790 41.667 3.61 0.00 37.61 2.29
1853 3725 4.122046 GTCAAGCATGGCAACTTTCTTTT 58.878 39.130 3.61 0.00 37.61 2.27
1854 3726 3.493176 GGTCAAGCATGGCAACTTTCTTT 60.493 43.478 0.00 0.00 30.82 2.52
1855 3727 2.036346 GGTCAAGCATGGCAACTTTCTT 59.964 45.455 0.00 0.00 30.82 2.52
1856 3728 1.615392 GGTCAAGCATGGCAACTTTCT 59.385 47.619 0.00 0.00 30.82 2.52
1857 3729 1.340889 TGGTCAAGCATGGCAACTTTC 59.659 47.619 0.00 1.63 30.82 2.62
1858 3730 1.069049 GTGGTCAAGCATGGCAACTTT 59.931 47.619 0.00 0.00 32.03 2.66
1859 3731 0.675633 GTGGTCAAGCATGGCAACTT 59.324 50.000 0.00 0.00 32.03 2.66
1860 3732 0.178981 AGTGGTCAAGCATGGCAACT 60.179 50.000 0.00 0.00 40.71 3.16
1861 3733 1.200020 GTAGTGGTCAAGCATGGCAAC 59.800 52.381 0.00 0.00 35.17 4.17
1862 3734 1.202867 TGTAGTGGTCAAGCATGGCAA 60.203 47.619 0.00 0.00 30.82 4.52
1863 3735 0.399833 TGTAGTGGTCAAGCATGGCA 59.600 50.000 0.00 0.00 30.82 4.92
1864 3736 1.533625 TTGTAGTGGTCAAGCATGGC 58.466 50.000 0.00 0.00 0.00 4.40
1865 3737 3.674138 GCAATTGTAGTGGTCAAGCATGG 60.674 47.826 7.40 0.00 0.00 3.66
1866 3738 3.504863 GCAATTGTAGTGGTCAAGCATG 58.495 45.455 7.40 0.00 0.00 4.06
1867 3739 2.493278 GGCAATTGTAGTGGTCAAGCAT 59.507 45.455 7.40 0.00 0.00 3.79
1868 3740 1.885887 GGCAATTGTAGTGGTCAAGCA 59.114 47.619 7.40 0.00 0.00 3.91
1869 3741 1.885887 TGGCAATTGTAGTGGTCAAGC 59.114 47.619 7.40 0.00 0.00 4.01
1870 3742 3.129287 GGATGGCAATTGTAGTGGTCAAG 59.871 47.826 7.40 0.00 0.00 3.02
1871 3743 3.088532 GGATGGCAATTGTAGTGGTCAA 58.911 45.455 7.40 0.00 0.00 3.18
1872 3744 2.308570 AGGATGGCAATTGTAGTGGTCA 59.691 45.455 7.40 0.00 0.00 4.02
1873 3745 2.945668 GAGGATGGCAATTGTAGTGGTC 59.054 50.000 7.40 0.00 0.00 4.02
1874 3746 2.680805 CGAGGATGGCAATTGTAGTGGT 60.681 50.000 7.40 0.00 0.00 4.16
1875 3747 1.942657 CGAGGATGGCAATTGTAGTGG 59.057 52.381 7.40 0.00 0.00 4.00
1876 3748 1.331756 GCGAGGATGGCAATTGTAGTG 59.668 52.381 7.40 0.00 40.68 2.74
1877 3749 1.668419 GCGAGGATGGCAATTGTAGT 58.332 50.000 7.40 0.00 40.68 2.73
1878 3750 0.583438 CGCGAGGATGGCAATTGTAG 59.417 55.000 0.00 0.00 41.24 2.74
1879 3751 0.107897 ACGCGAGGATGGCAATTGTA 60.108 50.000 15.93 0.00 41.24 2.41
1880 3752 1.369091 GACGCGAGGATGGCAATTGT 61.369 55.000 15.93 0.00 41.24 2.71
1881 3753 1.353103 GACGCGAGGATGGCAATTG 59.647 57.895 15.93 0.00 41.24 2.32
1882 3754 1.078497 TGACGCGAGGATGGCAATT 60.078 52.632 15.93 0.00 41.24 2.32
1883 3755 1.815421 GTGACGCGAGGATGGCAAT 60.815 57.895 15.93 0.00 41.24 3.56
1884 3756 2.434185 GTGACGCGAGGATGGCAA 60.434 61.111 15.93 0.00 41.24 4.52
1885 3757 3.381983 AGTGACGCGAGGATGGCA 61.382 61.111 15.93 0.00 41.24 4.92
1886 3758 2.835701 TTCAGTGACGCGAGGATGGC 62.836 60.000 15.93 0.00 36.02 4.40
1887 3759 1.078759 GTTCAGTGACGCGAGGATGG 61.079 60.000 15.93 0.00 0.00 3.51
1888 3760 0.109086 AGTTCAGTGACGCGAGGATG 60.109 55.000 15.93 6.45 0.00 3.51
1889 3761 0.171455 GAGTTCAGTGACGCGAGGAT 59.829 55.000 15.93 0.00 0.00 3.24
1890 3762 1.579932 GAGTTCAGTGACGCGAGGA 59.420 57.895 15.93 0.00 0.00 3.71
1891 3763 1.444553 GGAGTTCAGTGACGCGAGG 60.445 63.158 15.93 0.00 0.00 4.63
1892 3764 0.109086 ATGGAGTTCAGTGACGCGAG 60.109 55.000 15.93 0.00 0.00 5.03
1893 3765 1.170442 TATGGAGTTCAGTGACGCGA 58.830 50.000 15.93 0.00 0.00 5.87
1894 3766 1.920574 CTTATGGAGTTCAGTGACGCG 59.079 52.381 3.53 3.53 0.00 6.01
1895 3767 3.232213 TCTTATGGAGTTCAGTGACGC 57.768 47.619 0.00 0.00 0.00 5.19
1896 3768 4.090066 CGTTTCTTATGGAGTTCAGTGACG 59.910 45.833 0.00 0.00 0.00 4.35
1897 3769 4.989168 ACGTTTCTTATGGAGTTCAGTGAC 59.011 41.667 0.00 0.00 0.00 3.67
1898 3770 5.209818 ACGTTTCTTATGGAGTTCAGTGA 57.790 39.130 0.00 0.00 0.00 3.41
1899 3771 5.388475 CGAACGTTTCTTATGGAGTTCAGTG 60.388 44.000 0.46 0.00 38.18 3.66
1900 3772 4.684703 CGAACGTTTCTTATGGAGTTCAGT 59.315 41.667 0.46 0.00 38.18 3.41
1901 3773 4.091509 CCGAACGTTTCTTATGGAGTTCAG 59.908 45.833 0.46 0.85 38.18 3.02
1902 3774 3.991773 CCGAACGTTTCTTATGGAGTTCA 59.008 43.478 0.46 0.00 38.18 3.18
1903 3775 4.240096 TCCGAACGTTTCTTATGGAGTTC 58.760 43.478 0.46 0.00 35.85 3.01
1904 3776 4.243270 CTCCGAACGTTTCTTATGGAGTT 58.757 43.478 0.46 0.00 37.37 3.01
1905 3777 3.846360 CTCCGAACGTTTCTTATGGAGT 58.154 45.455 0.46 0.00 37.37 3.85
1906 3778 3.846360 ACTCCGAACGTTTCTTATGGAG 58.154 45.455 19.74 19.74 45.45 3.86
1907 3779 3.947910 ACTCCGAACGTTTCTTATGGA 57.052 42.857 0.46 2.97 0.00 3.41
1908 3780 3.424433 GCAACTCCGAACGTTTCTTATGG 60.424 47.826 0.46 0.00 0.00 2.74
1909 3781 3.424433 GGCAACTCCGAACGTTTCTTATG 60.424 47.826 0.46 0.00 0.00 1.90
1910 3782 2.740447 GGCAACTCCGAACGTTTCTTAT 59.260 45.455 0.46 0.00 0.00 1.73
1911 3783 2.137523 GGCAACTCCGAACGTTTCTTA 58.862 47.619 0.46 0.00 0.00 2.10
1912 3784 0.942252 GGCAACTCCGAACGTTTCTT 59.058 50.000 0.46 0.00 0.00 2.52
1913 3785 0.179067 TGGCAACTCCGAACGTTTCT 60.179 50.000 0.46 0.00 37.80 2.52
1914 3786 0.872388 ATGGCAACTCCGAACGTTTC 59.128 50.000 0.46 0.00 37.80 2.78
1915 3787 0.591170 CATGGCAACTCCGAACGTTT 59.409 50.000 0.46 0.00 37.80 3.60
1916 3788 0.534203 ACATGGCAACTCCGAACGTT 60.534 50.000 0.00 0.00 37.80 3.99
1917 3789 1.070786 ACATGGCAACTCCGAACGT 59.929 52.632 0.00 0.00 37.80 3.99
1918 3790 1.227999 ACACATGGCAACTCCGAACG 61.228 55.000 0.00 0.00 37.80 3.95
1922 3794 1.227999 ACGAACACATGGCAACTCCG 61.228 55.000 0.00 0.00 37.80 4.63
2007 3879 4.426023 AGGAGACATTAGGGGAGGGTATAA 59.574 45.833 0.00 0.00 0.00 0.98
2076 3950 5.847670 AAAAAGCAGAAGTACTCGATGAC 57.152 39.130 0.00 0.00 0.00 3.06
2081 3955 5.462398 ACAGTGTAAAAAGCAGAAGTACTCG 59.538 40.000 0.00 0.00 0.00 4.18
2089 3963 6.919721 AGAAAACAACAGTGTAAAAAGCAGA 58.080 32.000 0.00 0.00 36.80 4.26
2104 3978 7.010183 GCCTTTTTGTTAAGAGGAGAAAACAAC 59.990 37.037 0.00 0.00 40.47 3.32
2139 4020 0.803117 CAACACATGCAGCTCTCCTG 59.197 55.000 0.00 0.00 44.67 3.86
2140 4021 0.399454 ACAACACATGCAGCTCTCCT 59.601 50.000 0.00 0.00 0.00 3.69
2141 4022 2.099141 TACAACACATGCAGCTCTCC 57.901 50.000 0.00 0.00 0.00 3.71
2205 4086 9.294030 CAATTCCAGAGCAAATTAAGATGTAAC 57.706 33.333 0.00 0.00 0.00 2.50
2234 4115 7.370383 AGCATGTTAAATTTGAAACGATGTCT 58.630 30.769 0.00 4.94 0.00 3.41
2240 4121 8.814733 TCGTATAGCATGTTAAATTTGAAACG 57.185 30.769 0.00 0.00 0.00 3.60
2247 4128 8.757164 TCGATCATCGTATAGCATGTTAAATT 57.243 30.769 7.00 0.00 41.35 1.82
2258 4139 8.499162 TGTCTGCATATATCGATCATCGTATAG 58.501 37.037 7.00 4.98 41.35 1.31
2457 4347 7.111247 AGAAATTGTTCACTTGATGTCCAAA 57.889 32.000 0.00 0.00 36.09 3.28
2481 4371 9.725019 ATCTAACTGATAGACACATGAACAAAA 57.275 29.630 0.00 0.00 43.33 2.44
2570 4467 9.787532 TTTGTGATGTTTGACTCTTTCTAAAAG 57.212 29.630 0.00 0.00 0.00 2.27
2579 4476 6.757897 TCAAAGTTTGTGATGTTTGACTCT 57.242 33.333 15.08 0.00 34.72 3.24
2702 4727 1.261480 ACACAGTTGCACACCCAAAA 58.739 45.000 0.00 0.00 0.00 2.44
2706 4731 2.773487 TGTATACACAGTTGCACACCC 58.227 47.619 0.08 0.00 0.00 4.61
2952 4978 2.359169 GGTGAGGATCTCGGTGCCA 61.359 63.158 0.00 0.00 34.92 4.92
3192 5218 4.015406 TCACTGATGGGCGGCGTT 62.015 61.111 9.37 0.00 0.00 4.84
3519 5547 5.815740 ACCACATCGTAAATTAAGCCAGTAG 59.184 40.000 0.00 0.00 0.00 2.57
3604 5647 2.483714 CGGGAGGTAGCACGTAGTACTA 60.484 54.545 0.00 0.00 41.61 1.82
3605 5648 1.745141 CGGGAGGTAGCACGTAGTACT 60.745 57.143 0.00 0.00 41.61 2.73
3606 5649 0.659957 CGGGAGGTAGCACGTAGTAC 59.340 60.000 0.00 0.00 41.61 2.73
3607 5650 3.085208 CGGGAGGTAGCACGTAGTA 57.915 57.895 0.00 0.00 41.61 1.82
3759 5844 5.287992 TGCTGTCGTATATATCTAGTCGACG 59.712 44.000 10.46 0.00 46.54 5.12
3760 5845 6.644191 TGCTGTCGTATATATCTAGTCGAC 57.356 41.667 7.70 7.70 44.75 4.20
3761 5846 7.662604 TTTGCTGTCGTATATATCTAGTCGA 57.337 36.000 0.00 0.00 0.00 4.20
3762 5847 7.801783 TGTTTTGCTGTCGTATATATCTAGTCG 59.198 37.037 0.00 0.00 0.00 4.18
3763 5848 9.119329 CTGTTTTGCTGTCGTATATATCTAGTC 57.881 37.037 0.00 0.00 0.00 2.59
3764 5849 8.847196 TCTGTTTTGCTGTCGTATATATCTAGT 58.153 33.333 0.00 0.00 0.00 2.57
3765 5850 9.119329 GTCTGTTTTGCTGTCGTATATATCTAG 57.881 37.037 0.00 0.00 0.00 2.43
3766 5851 8.080417 GGTCTGTTTTGCTGTCGTATATATCTA 58.920 37.037 0.00 0.00 0.00 1.98
3767 5852 6.924060 GGTCTGTTTTGCTGTCGTATATATCT 59.076 38.462 0.00 0.00 0.00 1.98
3768 5853 6.924060 AGGTCTGTTTTGCTGTCGTATATATC 59.076 38.462 0.00 0.00 0.00 1.63
3778 6721 1.139058 ACTCGAGGTCTGTTTTGCTGT 59.861 47.619 18.41 0.00 0.00 4.40
3797 6740 2.940410 TCACCTTTTTGTTGTCGAGGAC 59.060 45.455 0.00 0.00 0.00 3.85
3798 6741 2.940410 GTCACCTTTTTGTTGTCGAGGA 59.060 45.455 0.00 0.00 0.00 3.71
3799 6742 2.680841 TGTCACCTTTTTGTTGTCGAGG 59.319 45.455 0.00 0.00 0.00 4.63
3801 6744 2.094575 CGTGTCACCTTTTTGTTGTCGA 59.905 45.455 0.00 0.00 0.00 4.20
3802 6745 2.436670 CGTGTCACCTTTTTGTTGTCG 58.563 47.619 0.00 0.00 0.00 4.35
3803 6746 2.182014 GCGTGTCACCTTTTTGTTGTC 58.818 47.619 0.00 0.00 0.00 3.18
3805 6748 2.270275 TGCGTGTCACCTTTTTGTTG 57.730 45.000 0.00 0.00 0.00 3.33
3806 6749 3.305398 TTTGCGTGTCACCTTTTTGTT 57.695 38.095 0.00 0.00 0.00 2.83
3808 6751 3.181525 GGTTTTTGCGTGTCACCTTTTTG 60.182 43.478 0.00 0.00 0.00 2.44
3809 6752 2.997303 GGTTTTTGCGTGTCACCTTTTT 59.003 40.909 0.00 0.00 0.00 1.94
3946 6964 1.666011 GGTCTCTGGTGCACTTCGA 59.334 57.895 17.98 9.66 0.00 3.71
4278 7308 4.308899 AGACGACTATGACTACAATGGC 57.691 45.455 0.00 0.00 0.00 4.40
4361 7391 1.134560 ACGATCTAGAGCAAACCGGTC 59.865 52.381 8.04 0.00 42.76 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.