Multiple sequence alignment - TraesCS2D01G460000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G460000 chr2D 100.000 3718 0 0 1 3718 566832296 566836013 0.000000e+00 6866.0
1 TraesCS2D01G460000 chr2D 92.645 707 29 7 3013 3718 566979871 566980555 0.000000e+00 996.0
2 TraesCS2D01G460000 chr2D 95.833 192 8 0 1 192 295651927 295651736 1.000000e-80 311.0
3 TraesCS2D01G460000 chr2D 95.833 192 8 0 1 192 386463228 386463037 1.000000e-80 311.0
4 TraesCS2D01G460000 chr2A 89.699 1660 99 30 941 2569 706640852 706642470 0.000000e+00 2052.0
5 TraesCS2D01G460000 chr2A 95.298 957 27 7 2769 3718 706643638 706644583 0.000000e+00 1502.0
6 TraesCS2D01G460000 chr2A 92.201 718 31 6 3001 3718 706741343 706742035 0.000000e+00 992.0
7 TraesCS2D01G460000 chr2A 83.621 232 25 7 478 704 706640634 706640857 4.870000e-49 206.0
8 TraesCS2D01G460000 chr2A 93.548 124 3 4 2669 2787 706643493 706643616 2.950000e-41 180.0
9 TraesCS2D01G460000 chr2B 95.895 950 24 6 2769 3718 679815124 679816058 0.000000e+00 1524.0
10 TraesCS2D01G460000 chr2B 91.657 887 46 20 1923 2787 679814222 679815102 0.000000e+00 1203.0
11 TraesCS2D01G460000 chr2B 88.685 928 45 28 941 1822 679812574 679813487 0.000000e+00 1077.0
12 TraesCS2D01G460000 chr2B 92.618 718 28 6 3001 3718 679885210 679885902 0.000000e+00 1009.0
13 TraesCS2D01G460000 chr2B 82.913 515 53 15 190 704 679812100 679812579 7.380000e-117 431.0
14 TraesCS2D01G460000 chr2B 96.429 56 2 0 1832 1887 679814164 679814219 3.950000e-15 93.5
15 TraesCS2D01G460000 chr2B 86.667 60 7 1 572 631 441867583 441867525 8.620000e-07 65.8
16 TraesCS2D01G460000 chr7D 95.868 242 8 2 707 946 598519481 598519722 1.250000e-104 390.0
17 TraesCS2D01G460000 chr7D 93.004 243 15 2 705 946 257978311 257978552 1.640000e-93 353.0
18 TraesCS2D01G460000 chr7D 95.833 192 8 0 1 192 235830771 235830962 1.000000e-80 311.0
19 TraesCS2D01G460000 chr7D 80.442 317 41 13 1420 1727 60279478 60279782 4.830000e-54 222.0
20 TraesCS2D01G460000 chr4D 95.473 243 10 1 706 947 500495491 500495733 1.620000e-103 387.0
21 TraesCS2D01G460000 chr6D 95.021 241 11 1 710 949 55433166 55432926 9.750000e-101 377.0
22 TraesCS2D01G460000 chr6D 92.946 241 16 1 708 947 464734454 464734694 2.120000e-92 350.0
23 TraesCS2D01G460000 chr3D 93.878 245 14 1 706 949 23677559 23677315 5.870000e-98 368.0
24 TraesCS2D01G460000 chr3D 95.833 192 8 0 1 192 491080022 491079831 1.000000e-80 311.0
25 TraesCS2D01G460000 chr1B 93.548 248 13 3 705 949 520875299 520875052 2.110000e-97 366.0
26 TraesCS2D01G460000 chr5D 93.724 239 13 2 708 945 437126794 437126557 1.270000e-94 357.0
27 TraesCS2D01G460000 chr5D 95.833 192 8 0 1 192 391837416 391837225 1.000000e-80 311.0
28 TraesCS2D01G460000 chr5D 92.823 209 12 3 1 207 67045841 67045634 2.170000e-77 300.0
29 TraesCS2D01G460000 chr1D 92.623 244 18 0 706 949 309990573 309990330 5.910000e-93 351.0
30 TraesCS2D01G460000 chr1D 95.833 192 8 0 1 192 324772726 324772917 1.000000e-80 311.0
31 TraesCS2D01G460000 chr7B 77.797 581 89 27 1160 1727 2784438 2784991 4.630000e-84 322.0
32 TraesCS2D01G460000 chr1A 95.833 192 8 0 1 192 500608887 500608696 1.000000e-80 311.0
33 TraesCS2D01G460000 chr7A 92.925 212 13 2 1 210 507710907 507711118 1.300000e-79 307.0
34 TraesCS2D01G460000 chr7A 80.556 324 39 15 1416 1727 64608849 64609160 1.040000e-55 228.0
35 TraesCS2D01G460000 chr6B 97.561 41 0 1 583 623 712467470 712467431 6.660000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G460000 chr2D 566832296 566836013 3717 False 6866.0 6866 100.0000 1 3718 1 chr2D.!!$F1 3717
1 TraesCS2D01G460000 chr2D 566979871 566980555 684 False 996.0 996 92.6450 3013 3718 1 chr2D.!!$F2 705
2 TraesCS2D01G460000 chr2A 706741343 706742035 692 False 992.0 992 92.2010 3001 3718 1 chr2A.!!$F1 717
3 TraesCS2D01G460000 chr2A 706640634 706644583 3949 False 985.0 2052 90.5415 478 3718 4 chr2A.!!$F2 3240
4 TraesCS2D01G460000 chr2B 679885210 679885902 692 False 1009.0 1009 92.6180 3001 3718 1 chr2B.!!$F1 717
5 TraesCS2D01G460000 chr2B 679812100 679816058 3958 False 865.7 1524 91.1158 190 3718 5 chr2B.!!$F2 3528
6 TraesCS2D01G460000 chr7B 2784438 2784991 553 False 322.0 322 77.7970 1160 1727 1 chr7B.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 458 0.034186 GACTGCATGGTGATGGGGAA 60.034 55.000 0.00 0.0 0.00 3.97 F
464 466 0.106967 GGTGATGGGGAAAGAGGAGC 60.107 60.000 0.00 0.0 0.00 4.70 F
1679 1737 0.110056 GTACGAGAACGAGAACCGCA 60.110 55.000 0.00 0.0 43.32 5.69 F
1767 1843 0.692419 TCCTCTTCCCTCCTCCATGC 60.692 60.000 0.00 0.0 0.00 4.06 F
1801 1882 1.067416 TGCATGATAGGCCGACGAC 59.933 57.895 0.00 0.0 0.00 4.34 F
2075 2823 1.134560 ACGATCTAGAGCAAACCGGTC 59.865 52.381 8.04 0.0 42.76 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2649 0.039165 CCGCCTGCCTTTTTCTTCAC 60.039 55.000 0.00 0.00 0.00 3.18 R
2413 3170 0.676466 CCGTGCTCCATGGCAAGTTA 60.676 55.000 6.96 0.00 44.18 2.24 R
2490 3247 0.694444 ATAGGCTCCCCGAACCACAT 60.694 55.000 0.00 0.00 35.76 3.21 R
2668 3500 1.008424 ATCATGGCGCGTCGACTAG 60.008 57.895 14.70 8.35 35.04 2.57 R
2669 3501 1.299089 CATCATGGCGCGTCGACTA 60.299 57.895 14.70 0.00 35.04 2.59 R
2989 4735 1.301401 GGCCATCCACGCGCTTATA 60.301 57.895 5.73 0.00 0.00 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.308782 CTTAACCATCTTTGATTAACGAGCT 57.691 36.000 0.00 0.00 0.00 4.09
25 26 8.420374 CTTAACCATCTTTGATTAACGAGCTA 57.580 34.615 0.00 0.00 0.00 3.32
26 27 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
27 28 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
28 29 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
29 30 6.127310 ACCATCTTTGATTAACGAGCTAGTCT 60.127 38.462 0.00 0.00 0.00 3.24
30 31 7.068348 ACCATCTTTGATTAACGAGCTAGTCTA 59.932 37.037 0.00 0.00 0.00 2.59
31 32 7.593273 CCATCTTTGATTAACGAGCTAGTCTAG 59.407 40.741 0.00 2.18 0.00 2.43
32 33 7.627298 TCTTTGATTAACGAGCTAGTCTAGT 57.373 36.000 8.68 0.00 31.68 2.57
33 34 8.728337 TCTTTGATTAACGAGCTAGTCTAGTA 57.272 34.615 8.68 0.00 30.15 1.82
34 35 8.828644 TCTTTGATTAACGAGCTAGTCTAGTAG 58.171 37.037 8.68 3.39 30.15 2.57
35 36 8.728337 TTTGATTAACGAGCTAGTCTAGTAGA 57.272 34.615 8.68 0.00 30.15 2.59
36 37 7.949903 TGATTAACGAGCTAGTCTAGTAGAG 57.050 40.000 8.68 1.49 30.15 2.43
37 38 7.724287 TGATTAACGAGCTAGTCTAGTAGAGA 58.276 38.462 8.68 0.00 30.15 3.10
51 52 7.123355 TCTAGTAGAGACTTACTAGGGACAC 57.877 44.000 20.18 0.00 46.84 3.67
52 53 4.768583 AGTAGAGACTTACTAGGGACACG 58.231 47.826 0.00 0.00 32.25 4.49
53 54 3.002038 AGAGACTTACTAGGGACACGG 57.998 52.381 0.00 0.00 0.00 4.94
54 55 2.308275 AGAGACTTACTAGGGACACGGT 59.692 50.000 0.00 0.00 0.00 4.83
55 56 2.422832 GAGACTTACTAGGGACACGGTG 59.577 54.545 6.58 6.58 0.00 4.94
56 57 2.165998 GACTTACTAGGGACACGGTGT 58.834 52.381 14.66 14.66 0.00 4.16
57 58 2.560105 GACTTACTAGGGACACGGTGTT 59.440 50.000 15.94 1.99 0.00 3.32
58 59 2.967887 ACTTACTAGGGACACGGTGTTT 59.032 45.455 15.94 7.12 0.00 2.83
59 60 3.389002 ACTTACTAGGGACACGGTGTTTT 59.611 43.478 15.94 6.77 0.00 2.43
60 61 2.249844 ACTAGGGACACGGTGTTTTG 57.750 50.000 15.94 7.98 0.00 2.44
61 62 1.487558 ACTAGGGACACGGTGTTTTGT 59.512 47.619 15.94 8.56 0.00 2.83
62 63 2.140717 CTAGGGACACGGTGTTTTGTC 58.859 52.381 15.94 1.68 41.28 3.18
63 64 0.544697 AGGGACACGGTGTTTTGTCT 59.455 50.000 15.94 6.16 41.65 3.41
64 65 1.764134 AGGGACACGGTGTTTTGTCTA 59.236 47.619 15.94 0.00 41.65 2.59
65 66 2.370849 AGGGACACGGTGTTTTGTCTAT 59.629 45.455 15.94 0.00 41.65 1.98
66 67 2.482721 GGGACACGGTGTTTTGTCTATG 59.517 50.000 15.94 0.00 41.65 2.23
67 68 3.135994 GGACACGGTGTTTTGTCTATGT 58.864 45.455 15.94 0.00 41.65 2.29
68 69 4.309099 GGACACGGTGTTTTGTCTATGTA 58.691 43.478 15.94 0.00 41.65 2.29
69 70 4.933400 GGACACGGTGTTTTGTCTATGTAT 59.067 41.667 15.94 0.00 41.65 2.29
70 71 5.063060 GGACACGGTGTTTTGTCTATGTATC 59.937 44.000 15.94 0.00 41.65 2.24
71 72 4.933400 ACACGGTGTTTTGTCTATGTATCC 59.067 41.667 8.21 0.00 0.00 2.59
72 73 4.932799 CACGGTGTTTTGTCTATGTATCCA 59.067 41.667 0.00 0.00 0.00 3.41
73 74 4.933400 ACGGTGTTTTGTCTATGTATCCAC 59.067 41.667 0.00 0.00 0.00 4.02
74 75 4.932799 CGGTGTTTTGTCTATGTATCCACA 59.067 41.667 0.00 0.00 39.52 4.17
75 76 5.163893 CGGTGTTTTGTCTATGTATCCACAC 60.164 44.000 0.00 0.00 37.54 3.82
76 77 5.703592 GGTGTTTTGTCTATGTATCCACACA 59.296 40.000 0.00 0.00 37.54 3.72
77 78 6.374333 GGTGTTTTGTCTATGTATCCACACAT 59.626 38.462 0.00 0.00 41.88 3.21
78 79 7.243487 GTGTTTTGTCTATGTATCCACACATG 58.757 38.462 0.00 0.00 39.46 3.21
79 80 6.939730 TGTTTTGTCTATGTATCCACACATGT 59.060 34.615 0.00 0.00 39.46 3.21
80 81 8.097662 TGTTTTGTCTATGTATCCACACATGTA 58.902 33.333 0.00 0.00 39.46 2.29
81 82 9.109393 GTTTTGTCTATGTATCCACACATGTAT 57.891 33.333 0.00 0.00 39.46 2.29
82 83 8.887036 TTTGTCTATGTATCCACACATGTATC 57.113 34.615 0.00 0.00 39.46 2.24
83 84 7.595819 TGTCTATGTATCCACACATGTATCA 57.404 36.000 0.00 0.00 39.46 2.15
84 85 8.017418 TGTCTATGTATCCACACATGTATCAA 57.983 34.615 0.00 0.00 39.46 2.57
85 86 8.143835 TGTCTATGTATCCACACATGTATCAAG 58.856 37.037 0.00 0.00 39.46 3.02
86 87 8.144478 GTCTATGTATCCACACATGTATCAAGT 58.856 37.037 0.00 0.00 39.46 3.16
87 88 8.704668 TCTATGTATCCACACATGTATCAAGTT 58.295 33.333 0.00 0.00 39.46 2.66
88 89 9.330063 CTATGTATCCACACATGTATCAAGTTT 57.670 33.333 0.00 0.00 39.46 2.66
89 90 7.609760 TGTATCCACACATGTATCAAGTTTC 57.390 36.000 0.00 0.00 0.00 2.78
90 91 7.394016 TGTATCCACACATGTATCAAGTTTCT 58.606 34.615 0.00 0.00 0.00 2.52
91 92 6.748333 ATCCACACATGTATCAAGTTTCTG 57.252 37.500 0.00 0.00 0.00 3.02
92 93 5.003160 TCCACACATGTATCAAGTTTCTGG 58.997 41.667 0.00 0.00 0.00 3.86
93 94 4.761739 CCACACATGTATCAAGTTTCTGGT 59.238 41.667 0.00 0.00 0.00 4.00
94 95 5.241506 CCACACATGTATCAAGTTTCTGGTT 59.758 40.000 0.00 0.00 0.00 3.67
95 96 6.429692 CCACACATGTATCAAGTTTCTGGTTA 59.570 38.462 0.00 0.00 0.00 2.85
96 97 7.040755 CCACACATGTATCAAGTTTCTGGTTAA 60.041 37.037 0.00 0.00 0.00 2.01
97 98 8.514594 CACACATGTATCAAGTTTCTGGTTAAT 58.485 33.333 0.00 0.00 0.00 1.40
98 99 9.733556 ACACATGTATCAAGTTTCTGGTTAATA 57.266 29.630 0.00 0.00 0.00 0.98
99 100 9.988350 CACATGTATCAAGTTTCTGGTTAATAC 57.012 33.333 0.00 0.00 0.00 1.89
100 101 9.733556 ACATGTATCAAGTTTCTGGTTAATACA 57.266 29.630 0.00 0.00 34.10 2.29
221 222 4.451150 GTGGGCAGCGTCGATGGA 62.451 66.667 13.06 0.00 0.00 3.41
223 224 4.148825 GGGCAGCGTCGATGGAGT 62.149 66.667 13.06 0.00 0.00 3.85
294 295 1.128188 GTCACTGAGTTGGAGGGGGT 61.128 60.000 0.00 0.00 0.00 4.95
295 296 1.127567 TCACTGAGTTGGAGGGGGTG 61.128 60.000 0.00 0.00 0.00 4.61
315 317 2.524640 TCGTGGGTAGGTGGTGCA 60.525 61.111 0.00 0.00 0.00 4.57
378 380 0.890996 GGGGTGCAGAGTGGTTGAAG 60.891 60.000 0.00 0.00 0.00 3.02
403 405 1.302383 CGGCGTTTGGATAAGGTGCA 61.302 55.000 0.00 0.00 0.00 4.57
407 409 2.030274 GCGTTTGGATAAGGTGCAAAGT 60.030 45.455 0.00 0.00 46.80 2.66
417 419 0.890996 GGTGCAAAGTGAGTGGGGAG 60.891 60.000 0.00 0.00 0.00 4.30
447 449 1.997874 GGGGAGAGGACTGCATGGT 60.998 63.158 0.00 0.00 36.18 3.55
456 458 0.034186 GACTGCATGGTGATGGGGAA 60.034 55.000 0.00 0.00 0.00 3.97
458 460 1.108776 CTGCATGGTGATGGGGAAAG 58.891 55.000 0.00 0.00 0.00 2.62
464 466 0.106967 GGTGATGGGGAAAGAGGAGC 60.107 60.000 0.00 0.00 0.00 4.70
465 467 0.106967 GTGATGGGGAAAGAGGAGCC 60.107 60.000 0.00 0.00 0.00 4.70
506 508 1.302993 GCCCAGCCCAAACGACTAA 60.303 57.895 0.00 0.00 0.00 2.24
507 509 0.679960 GCCCAGCCCAAACGACTAAT 60.680 55.000 0.00 0.00 0.00 1.73
511 513 2.615493 CCAGCCCAAACGACTAATGAGT 60.615 50.000 0.00 0.00 39.20 3.41
524 526 4.486090 ACTAATGAGTGTGACGTGTCATC 58.514 43.478 5.91 0.82 42.18 2.92
526 528 2.880963 TGAGTGTGACGTGTCATCAA 57.119 45.000 5.91 0.00 42.18 2.57
533 535 3.316868 TGTGACGTGTCATCAACTCTGTA 59.683 43.478 5.91 0.00 42.18 2.74
538 540 3.675225 CGTGTCATCAACTCTGTACCAAG 59.325 47.826 0.00 0.00 0.00 3.61
544 546 3.162666 TCAACTCTGTACCAAGATCCGT 58.837 45.455 0.00 0.00 0.00 4.69
550 552 3.119245 TCTGTACCAAGATCCGTGCTAAC 60.119 47.826 0.00 0.00 0.00 2.34
582 584 1.226660 GAAAATGCGTCATGGCGGG 60.227 57.895 22.88 0.00 35.06 6.13
595 597 3.127533 GCGGGATTGCTTCGTGCT 61.128 61.111 5.00 0.00 43.37 4.40
599 601 0.727398 GGGATTGCTTCGTGCTACAC 59.273 55.000 5.00 0.00 43.37 2.90
619 623 4.994852 ACACGTGTAGCACTTATCATTTGT 59.005 37.500 21.98 0.00 31.34 2.83
626 630 9.146984 GTGTAGCACTTATCATTTGTGTTACTA 57.853 33.333 15.99 5.00 43.66 1.82
670 677 3.370840 AGCAAATCTTGATGGGCTGTA 57.629 42.857 8.00 0.00 0.00 2.74
671 678 3.907221 AGCAAATCTTGATGGGCTGTAT 58.093 40.909 8.00 0.00 0.00 2.29
672 679 5.052693 AGCAAATCTTGATGGGCTGTATA 57.947 39.130 8.00 0.00 0.00 1.47
673 680 4.823989 AGCAAATCTTGATGGGCTGTATAC 59.176 41.667 8.00 0.00 0.00 1.47
674 681 4.823989 GCAAATCTTGATGGGCTGTATACT 59.176 41.667 4.17 0.00 0.00 2.12
675 682 5.278169 GCAAATCTTGATGGGCTGTATACTG 60.278 44.000 4.17 4.85 0.00 2.74
676 683 5.636903 AATCTTGATGGGCTGTATACTGT 57.363 39.130 10.96 0.00 0.00 3.55
704 716 3.670625 CTTCCAAACACGACCTTATCCA 58.329 45.455 0.00 0.00 0.00 3.41
705 717 3.992943 TCCAAACACGACCTTATCCAT 57.007 42.857 0.00 0.00 0.00 3.41
706 718 5.423704 TTCCAAACACGACCTTATCCATA 57.576 39.130 0.00 0.00 0.00 2.74
707 719 5.018539 TCCAAACACGACCTTATCCATAG 57.981 43.478 0.00 0.00 0.00 2.23
708 720 4.127171 CCAAACACGACCTTATCCATAGG 58.873 47.826 0.00 0.00 38.79 2.57
709 721 4.141801 CCAAACACGACCTTATCCATAGGA 60.142 45.833 0.00 0.00 36.58 2.94
710 722 5.424757 CAAACACGACCTTATCCATAGGAA 58.575 41.667 0.00 0.00 34.34 3.36
711 723 5.888982 AACACGACCTTATCCATAGGAAT 57.111 39.130 0.00 0.00 34.34 3.01
712 724 5.470047 ACACGACCTTATCCATAGGAATC 57.530 43.478 0.00 0.00 34.34 2.52
713 725 4.283722 ACACGACCTTATCCATAGGAATCC 59.716 45.833 0.00 0.00 34.34 3.01
714 726 4.283467 CACGACCTTATCCATAGGAATCCA 59.717 45.833 0.61 0.00 34.34 3.41
715 727 4.905456 ACGACCTTATCCATAGGAATCCAA 59.095 41.667 0.61 0.00 34.34 3.53
716 728 5.548056 ACGACCTTATCCATAGGAATCCAAT 59.452 40.000 0.61 0.00 34.34 3.16
717 729 6.729100 ACGACCTTATCCATAGGAATCCAATA 59.271 38.462 0.61 0.00 34.34 1.90
718 730 7.236847 ACGACCTTATCCATAGGAATCCAATAA 59.763 37.037 0.61 0.00 34.34 1.40
719 731 7.549488 CGACCTTATCCATAGGAATCCAATAAC 59.451 40.741 0.61 0.00 34.34 1.89
720 732 8.525729 ACCTTATCCATAGGAATCCAATAACT 57.474 34.615 0.61 0.00 34.34 2.24
721 733 8.606830 ACCTTATCCATAGGAATCCAATAACTC 58.393 37.037 0.61 0.00 34.34 3.01
722 734 8.049721 CCTTATCCATAGGAATCCAATAACTCC 58.950 40.741 0.61 0.00 34.34 3.85
723 735 5.843019 TCCATAGGAATCCAATAACTCCC 57.157 43.478 0.61 0.00 0.00 4.30
724 736 4.286032 TCCATAGGAATCCAATAACTCCCG 59.714 45.833 0.61 0.00 0.00 5.14
725 737 4.286032 CCATAGGAATCCAATAACTCCCGA 59.714 45.833 0.61 0.00 0.00 5.14
726 738 5.221843 CCATAGGAATCCAATAACTCCCGAA 60.222 44.000 0.61 0.00 0.00 4.30
727 739 4.152284 AGGAATCCAATAACTCCCGAAC 57.848 45.455 0.61 0.00 0.00 3.95
728 740 2.870411 GGAATCCAATAACTCCCGAACG 59.130 50.000 0.00 0.00 0.00 3.95
729 741 3.528532 GAATCCAATAACTCCCGAACGT 58.471 45.455 0.00 0.00 0.00 3.99
730 742 3.622166 ATCCAATAACTCCCGAACGTT 57.378 42.857 0.00 0.00 0.00 3.99
731 743 2.963432 TCCAATAACTCCCGAACGTTC 58.037 47.619 18.47 18.47 0.00 3.95
742 754 1.865725 CGAACGTTCGGATTTTGAGC 58.134 50.000 36.53 4.05 46.30 4.26
743 755 1.193650 CGAACGTTCGGATTTTGAGCA 59.806 47.619 36.53 0.00 46.30 4.26
744 756 2.159707 CGAACGTTCGGATTTTGAGCAT 60.160 45.455 36.53 0.00 46.30 3.79
745 757 3.666902 CGAACGTTCGGATTTTGAGCATT 60.667 43.478 36.53 0.00 46.30 3.56
746 758 3.915437 ACGTTCGGATTTTGAGCATTT 57.085 38.095 0.00 0.00 0.00 2.32
747 759 3.821841 ACGTTCGGATTTTGAGCATTTC 58.178 40.909 0.00 0.00 0.00 2.17
748 760 2.840176 CGTTCGGATTTTGAGCATTTCG 59.160 45.455 0.00 0.00 0.00 3.46
749 761 3.666902 CGTTCGGATTTTGAGCATTTCGT 60.667 43.478 0.00 0.00 0.00 3.85
750 762 3.740044 TCGGATTTTGAGCATTTCGTC 57.260 42.857 0.00 0.00 0.00 4.20
751 763 2.418628 TCGGATTTTGAGCATTTCGTCC 59.581 45.455 0.00 0.00 0.00 4.79
752 764 2.477863 CGGATTTTGAGCATTTCGTCCC 60.478 50.000 0.00 0.00 0.00 4.46
753 765 2.477863 GGATTTTGAGCATTTCGTCCCG 60.478 50.000 0.00 0.00 0.00 5.14
754 766 1.885560 TTTTGAGCATTTCGTCCCGA 58.114 45.000 0.00 0.00 0.00 5.14
755 767 1.885560 TTTGAGCATTTCGTCCCGAA 58.114 45.000 0.00 0.00 44.28 4.30
756 768 1.153353 TTGAGCATTTCGTCCCGAAC 58.847 50.000 0.00 0.00 45.64 3.95
767 779 2.829928 CGTCCCGAACGTTTTTACATG 58.170 47.619 0.46 0.00 46.42 3.21
768 780 2.411806 CGTCCCGAACGTTTTTACATGG 60.412 50.000 0.46 0.00 46.42 3.66
769 781 1.536331 TCCCGAACGTTTTTACATGGC 59.464 47.619 0.46 0.00 0.00 4.40
770 782 1.267261 CCCGAACGTTTTTACATGGCA 59.733 47.619 0.46 0.00 0.00 4.92
771 783 2.287668 CCCGAACGTTTTTACATGGCAA 60.288 45.455 0.46 0.00 0.00 4.52
772 784 2.722116 CCGAACGTTTTTACATGGCAAC 59.278 45.455 0.46 0.00 0.00 4.17
773 785 3.549221 CCGAACGTTTTTACATGGCAACT 60.549 43.478 0.46 0.00 37.61 3.16
774 786 4.039032 CGAACGTTTTTACATGGCAACTT 58.961 39.130 0.46 0.00 37.61 2.66
775 787 4.501198 CGAACGTTTTTACATGGCAACTTT 59.499 37.500 0.46 0.00 37.61 2.66
776 788 5.681982 CGAACGTTTTTACATGGCAACTTTA 59.318 36.000 0.46 0.00 37.61 1.85
777 789 6.129561 CGAACGTTTTTACATGGCAACTTTAG 60.130 38.462 0.46 0.00 37.61 1.85
778 790 6.139048 ACGTTTTTACATGGCAACTTTAGT 57.861 33.333 0.00 0.00 37.61 2.24
779 791 6.566141 ACGTTTTTACATGGCAACTTTAGTT 58.434 32.000 0.00 0.00 39.12 2.24
780 792 7.036829 ACGTTTTTACATGGCAACTTTAGTTT 58.963 30.769 0.00 0.00 35.83 2.66
781 793 7.009723 ACGTTTTTACATGGCAACTTTAGTTTG 59.990 33.333 0.00 0.00 35.83 2.93
782 794 7.009723 CGTTTTTACATGGCAACTTTAGTTTGT 59.990 33.333 0.00 0.00 35.83 2.83
783 795 9.303537 GTTTTTACATGGCAACTTTAGTTTGTA 57.696 29.630 0.00 0.00 35.83 2.41
784 796 9.522804 TTTTTACATGGCAACTTTAGTTTGTAG 57.477 29.630 0.00 0.00 35.83 2.74
785 797 5.705609 ACATGGCAACTTTAGTTTGTAGG 57.294 39.130 0.00 0.00 35.83 3.18
786 798 4.522789 ACATGGCAACTTTAGTTTGTAGGG 59.477 41.667 0.00 0.00 35.83 3.53
787 799 4.440826 TGGCAACTTTAGTTTGTAGGGA 57.559 40.909 0.00 0.00 35.83 4.20
788 800 4.993028 TGGCAACTTTAGTTTGTAGGGAT 58.007 39.130 0.00 0.00 35.83 3.85
789 801 4.764823 TGGCAACTTTAGTTTGTAGGGATG 59.235 41.667 0.00 0.00 35.83 3.51
790 802 4.765339 GGCAACTTTAGTTTGTAGGGATGT 59.235 41.667 0.00 0.00 35.83 3.06
791 803 5.106277 GGCAACTTTAGTTTGTAGGGATGTC 60.106 44.000 0.00 0.00 35.83 3.06
792 804 5.472137 GCAACTTTAGTTTGTAGGGATGTCA 59.528 40.000 0.00 0.00 35.83 3.58
793 805 6.016610 GCAACTTTAGTTTGTAGGGATGTCAA 60.017 38.462 0.00 0.00 35.83 3.18
794 806 7.360361 CAACTTTAGTTTGTAGGGATGTCAAC 58.640 38.462 0.00 0.00 35.83 3.18
795 807 6.838382 ACTTTAGTTTGTAGGGATGTCAACT 58.162 36.000 0.00 0.00 0.00 3.16
796 808 7.287810 ACTTTAGTTTGTAGGGATGTCAACTT 58.712 34.615 0.00 0.00 0.00 2.66
797 809 7.778382 ACTTTAGTTTGTAGGGATGTCAACTTT 59.222 33.333 0.00 0.00 0.00 2.66
798 810 9.280174 CTTTAGTTTGTAGGGATGTCAACTTTA 57.720 33.333 0.00 0.00 0.00 1.85
799 811 8.842358 TTAGTTTGTAGGGATGTCAACTTTAG 57.158 34.615 0.00 0.00 0.00 1.85
800 812 6.838382 AGTTTGTAGGGATGTCAACTTTAGT 58.162 36.000 0.00 0.00 0.00 2.24
801 813 7.287810 AGTTTGTAGGGATGTCAACTTTAGTT 58.712 34.615 0.00 0.00 39.12 2.24
802 814 8.434392 AGTTTGTAGGGATGTCAACTTTAGTTA 58.566 33.333 0.00 0.00 36.32 2.24
803 815 9.059260 GTTTGTAGGGATGTCAACTTTAGTTAA 57.941 33.333 0.00 0.00 36.32 2.01
804 816 9.802039 TTTGTAGGGATGTCAACTTTAGTTAAT 57.198 29.630 0.00 0.00 36.32 1.40
807 819 9.543783 GTAGGGATGTCAACTTTAGTTAATAGG 57.456 37.037 0.00 0.00 36.32 2.57
808 820 7.574607 AGGGATGTCAACTTTAGTTAATAGGG 58.425 38.462 0.00 0.00 36.32 3.53
809 821 6.771267 GGGATGTCAACTTTAGTTAATAGGGG 59.229 42.308 0.00 0.00 36.32 4.79
810 822 7.366191 GGGATGTCAACTTTAGTTAATAGGGGA 60.366 40.741 0.00 0.00 36.32 4.81
811 823 8.218488 GGATGTCAACTTTAGTTAATAGGGGAT 58.782 37.037 0.00 0.00 36.32 3.85
812 824 8.980481 ATGTCAACTTTAGTTAATAGGGGATG 57.020 34.615 0.00 0.00 36.32 3.51
813 825 7.343357 TGTCAACTTTAGTTAATAGGGGATGG 58.657 38.462 0.00 0.00 36.32 3.51
814 826 6.262496 GTCAACTTTAGTTAATAGGGGATGGC 59.738 42.308 0.00 0.00 36.32 4.40
815 827 5.987019 ACTTTAGTTAATAGGGGATGGCA 57.013 39.130 0.00 0.00 0.00 4.92
816 828 6.335781 ACTTTAGTTAATAGGGGATGGCAA 57.664 37.500 0.00 0.00 0.00 4.52
817 829 6.127101 ACTTTAGTTAATAGGGGATGGCAAC 58.873 40.000 0.00 0.00 0.00 4.17
818 830 5.987019 TTAGTTAATAGGGGATGGCAACT 57.013 39.130 0.00 0.00 37.61 3.16
819 831 4.881157 AGTTAATAGGGGATGGCAACTT 57.119 40.909 0.00 0.00 37.61 2.66
820 832 5.206905 AGTTAATAGGGGATGGCAACTTT 57.793 39.130 0.00 0.00 37.61 2.66
821 833 5.589831 AGTTAATAGGGGATGGCAACTTTT 58.410 37.500 0.00 0.00 37.61 2.27
822 834 6.022958 AGTTAATAGGGGATGGCAACTTTTT 58.977 36.000 0.00 0.00 37.61 1.94
823 835 6.154534 AGTTAATAGGGGATGGCAACTTTTTC 59.845 38.462 0.00 0.00 37.61 2.29
824 836 1.644509 AGGGGATGGCAACTTTTTCC 58.355 50.000 0.00 0.00 37.61 3.13
825 837 1.149923 AGGGGATGGCAACTTTTTCCT 59.850 47.619 0.00 0.00 37.61 3.36
826 838 1.977854 GGGGATGGCAACTTTTTCCTT 59.022 47.619 0.00 0.00 37.61 3.36
827 839 2.371841 GGGGATGGCAACTTTTTCCTTT 59.628 45.455 0.00 0.00 37.61 3.11
828 840 3.181445 GGGGATGGCAACTTTTTCCTTTT 60.181 43.478 0.00 0.00 37.61 2.27
829 841 4.460263 GGGATGGCAACTTTTTCCTTTTT 58.540 39.130 0.00 0.00 37.61 1.94
830 842 4.515191 GGGATGGCAACTTTTTCCTTTTTC 59.485 41.667 0.00 0.00 37.61 2.29
831 843 4.211164 GGATGGCAACTTTTTCCTTTTTCG 59.789 41.667 0.00 0.00 37.61 3.46
832 844 4.195225 TGGCAACTTTTTCCTTTTTCGT 57.805 36.364 0.00 0.00 37.61 3.85
833 845 4.570930 TGGCAACTTTTTCCTTTTTCGTT 58.429 34.783 0.00 0.00 37.61 3.85
834 846 5.721232 TGGCAACTTTTTCCTTTTTCGTTA 58.279 33.333 0.00 0.00 37.61 3.18
835 847 6.342111 TGGCAACTTTTTCCTTTTTCGTTAT 58.658 32.000 0.00 0.00 37.61 1.89
836 848 6.819146 TGGCAACTTTTTCCTTTTTCGTTATT 59.181 30.769 0.00 0.00 37.61 1.40
837 849 7.334671 TGGCAACTTTTTCCTTTTTCGTTATTT 59.665 29.630 0.00 0.00 37.61 1.40
838 850 8.178964 GGCAACTTTTTCCTTTTTCGTTATTTT 58.821 29.630 0.00 0.00 0.00 1.82
839 851 8.994881 GCAACTTTTTCCTTTTTCGTTATTTTG 58.005 29.630 0.00 0.00 0.00 2.44
842 854 9.425577 ACTTTTTCCTTTTTCGTTATTTTGTCA 57.574 25.926 0.00 0.00 0.00 3.58
843 855 9.900264 CTTTTTCCTTTTTCGTTATTTTGTCAG 57.100 29.630 0.00 0.00 0.00 3.51
844 856 9.640963 TTTTTCCTTTTTCGTTATTTTGTCAGA 57.359 25.926 0.00 0.00 0.00 3.27
845 857 9.640963 TTTTCCTTTTTCGTTATTTTGTCAGAA 57.359 25.926 0.00 0.00 0.00 3.02
846 858 9.640963 TTTCCTTTTTCGTTATTTTGTCAGAAA 57.359 25.926 0.00 0.00 0.00 2.52
847 859 9.640963 TTCCTTTTTCGTTATTTTGTCAGAAAA 57.359 25.926 0.00 0.00 36.29 2.29
848 860 9.810545 TCCTTTTTCGTTATTTTGTCAGAAAAT 57.189 25.926 0.00 0.00 37.41 1.82
851 863 9.695884 TTTTTCGTTATTTTGTCAGAAAATTGC 57.304 25.926 0.00 0.00 37.41 3.56
852 864 7.401484 TTCGTTATTTTGTCAGAAAATTGCC 57.599 32.000 0.00 0.00 32.64 4.52
853 865 6.507900 TCGTTATTTTGTCAGAAAATTGCCA 58.492 32.000 0.00 0.00 32.64 4.92
854 866 7.151308 TCGTTATTTTGTCAGAAAATTGCCAT 58.849 30.769 0.00 0.00 32.64 4.40
855 867 7.116090 TCGTTATTTTGTCAGAAAATTGCCATG 59.884 33.333 0.00 0.00 32.64 3.66
856 868 7.095691 CGTTATTTTGTCAGAAAATTGCCATGT 60.096 33.333 0.00 0.00 32.64 3.21
857 869 8.558700 GTTATTTTGTCAGAAAATTGCCATGTT 58.441 29.630 0.00 0.00 32.64 2.71
858 870 6.998968 TTTTGTCAGAAAATTGCCATGTTT 57.001 29.167 0.00 0.00 0.00 2.83
859 871 6.601741 TTTGTCAGAAAATTGCCATGTTTC 57.398 33.333 0.00 0.00 0.00 2.78
860 872 4.630111 TGTCAGAAAATTGCCATGTTTCC 58.370 39.130 2.96 0.00 32.74 3.13
861 873 3.996363 GTCAGAAAATTGCCATGTTTCCC 59.004 43.478 2.96 0.00 32.74 3.97
862 874 3.903090 TCAGAAAATTGCCATGTTTCCCT 59.097 39.130 2.96 0.00 32.74 4.20
863 875 5.047377 GTCAGAAAATTGCCATGTTTCCCTA 60.047 40.000 2.96 0.00 32.74 3.53
864 876 5.541868 TCAGAAAATTGCCATGTTTCCCTAA 59.458 36.000 2.96 0.00 32.74 2.69
865 877 6.213195 TCAGAAAATTGCCATGTTTCCCTAAT 59.787 34.615 2.96 0.00 32.74 1.73
866 878 6.314400 CAGAAAATTGCCATGTTTCCCTAATG 59.686 38.462 2.96 0.00 32.74 1.90
867 879 5.760484 AAATTGCCATGTTTCCCTAATGT 57.240 34.783 0.00 0.00 0.00 2.71
868 880 5.343307 AATTGCCATGTTTCCCTAATGTC 57.657 39.130 0.00 0.00 0.00 3.06
869 881 3.448093 TGCCATGTTTCCCTAATGTCA 57.552 42.857 0.00 0.00 0.00 3.58
870 882 3.979911 TGCCATGTTTCCCTAATGTCAT 58.020 40.909 0.00 0.00 0.00 3.06
871 883 3.700539 TGCCATGTTTCCCTAATGTCATG 59.299 43.478 0.00 0.00 34.41 3.07
872 884 3.491447 GCCATGTTTCCCTAATGTCATGC 60.491 47.826 0.00 0.00 33.63 4.06
873 885 3.700539 CCATGTTTCCCTAATGTCATGCA 59.299 43.478 0.00 0.00 33.63 3.96
874 886 4.160065 CCATGTTTCCCTAATGTCATGCAA 59.840 41.667 0.00 0.00 33.63 4.08
875 887 5.337410 CCATGTTTCCCTAATGTCATGCAAA 60.337 40.000 0.00 0.00 33.63 3.68
876 888 5.132897 TGTTTCCCTAATGTCATGCAAAC 57.867 39.130 0.00 0.00 0.00 2.93
877 889 4.832266 TGTTTCCCTAATGTCATGCAAACT 59.168 37.500 0.00 0.00 0.00 2.66
878 890 6.007076 TGTTTCCCTAATGTCATGCAAACTA 58.993 36.000 0.00 0.00 0.00 2.24
879 891 6.491745 TGTTTCCCTAATGTCATGCAAACTAA 59.508 34.615 0.00 0.00 0.00 2.24
880 892 7.014711 TGTTTCCCTAATGTCATGCAAACTAAA 59.985 33.333 0.00 0.00 0.00 1.85
881 893 6.509418 TCCCTAATGTCATGCAAACTAAAC 57.491 37.500 0.00 0.00 0.00 2.01
882 894 6.245408 TCCCTAATGTCATGCAAACTAAACT 58.755 36.000 0.00 0.00 0.00 2.66
883 895 6.719370 TCCCTAATGTCATGCAAACTAAACTT 59.281 34.615 0.00 0.00 0.00 2.66
884 896 6.808212 CCCTAATGTCATGCAAACTAAACTTG 59.192 38.462 0.00 0.00 0.00 3.16
886 898 3.976169 TGTCATGCAAACTAAACTTGCC 58.024 40.909 5.19 0.00 46.98 4.52
887 899 3.382865 TGTCATGCAAACTAAACTTGCCA 59.617 39.130 5.19 0.00 46.98 4.92
888 900 3.735746 GTCATGCAAACTAAACTTGCCAC 59.264 43.478 5.19 0.00 46.98 5.01
889 901 2.880963 TGCAAACTAAACTTGCCACC 57.119 45.000 5.19 0.00 46.98 4.61
890 902 2.383855 TGCAAACTAAACTTGCCACCT 58.616 42.857 5.19 0.00 46.98 4.00
891 903 3.556999 TGCAAACTAAACTTGCCACCTA 58.443 40.909 5.19 0.00 46.98 3.08
892 904 3.954904 TGCAAACTAAACTTGCCACCTAA 59.045 39.130 5.19 0.00 46.98 2.69
893 905 4.402793 TGCAAACTAAACTTGCCACCTAAA 59.597 37.500 5.19 0.00 46.98 1.85
894 906 5.105310 TGCAAACTAAACTTGCCACCTAAAA 60.105 36.000 5.19 0.00 46.98 1.52
895 907 5.989168 GCAAACTAAACTTGCCACCTAAAAT 59.011 36.000 0.00 0.00 42.74 1.82
896 908 6.073819 GCAAACTAAACTTGCCACCTAAAATG 60.074 38.462 0.00 0.00 42.74 2.32
897 909 6.724893 AACTAAACTTGCCACCTAAAATGT 57.275 33.333 0.00 0.00 0.00 2.71
898 910 6.724893 ACTAAACTTGCCACCTAAAATGTT 57.275 33.333 0.00 0.00 0.00 2.71
899 911 6.745116 ACTAAACTTGCCACCTAAAATGTTC 58.255 36.000 0.00 0.00 0.00 3.18
900 912 3.915437 ACTTGCCACCTAAAATGTTCG 57.085 42.857 0.00 0.00 0.00 3.95
901 913 2.556622 ACTTGCCACCTAAAATGTTCGG 59.443 45.455 0.00 0.00 0.00 4.30
902 914 1.540267 TGCCACCTAAAATGTTCGGG 58.460 50.000 0.00 0.00 0.00 5.14
903 915 1.202952 TGCCACCTAAAATGTTCGGGT 60.203 47.619 0.00 0.00 0.00 5.28
904 916 1.890489 GCCACCTAAAATGTTCGGGTT 59.110 47.619 0.00 0.00 0.00 4.11
905 917 2.352323 GCCACCTAAAATGTTCGGGTTG 60.352 50.000 0.00 0.00 0.00 3.77
906 918 2.352323 CCACCTAAAATGTTCGGGTTGC 60.352 50.000 0.00 0.00 0.00 4.17
907 919 1.890489 ACCTAAAATGTTCGGGTTGCC 59.110 47.619 0.00 0.00 0.00 4.52
908 920 1.889829 CCTAAAATGTTCGGGTTGCCA 59.110 47.619 0.00 0.00 0.00 4.92
909 921 2.495669 CCTAAAATGTTCGGGTTGCCAT 59.504 45.455 0.00 0.00 0.00 4.40
910 922 2.453983 AAAATGTTCGGGTTGCCATG 57.546 45.000 0.00 0.00 0.00 3.66
911 923 1.337118 AAATGTTCGGGTTGCCATGT 58.663 45.000 0.00 0.00 0.00 3.21
912 924 1.337118 AATGTTCGGGTTGCCATGTT 58.663 45.000 0.00 0.00 0.00 2.71
913 925 1.337118 ATGTTCGGGTTGCCATGTTT 58.663 45.000 0.00 0.00 0.00 2.83
914 926 1.982660 TGTTCGGGTTGCCATGTTTA 58.017 45.000 0.00 0.00 0.00 2.01
915 927 2.307768 TGTTCGGGTTGCCATGTTTAA 58.692 42.857 0.00 0.00 0.00 1.52
916 928 2.693591 TGTTCGGGTTGCCATGTTTAAA 59.306 40.909 0.00 0.00 0.00 1.52
917 929 3.322254 TGTTCGGGTTGCCATGTTTAAAT 59.678 39.130 0.00 0.00 0.00 1.40
918 930 3.859411 TCGGGTTGCCATGTTTAAATC 57.141 42.857 0.00 0.00 0.00 2.17
919 931 2.494073 TCGGGTTGCCATGTTTAAATCC 59.506 45.455 0.00 0.00 0.00 3.01
920 932 2.733858 CGGGTTGCCATGTTTAAATCCG 60.734 50.000 4.78 4.78 0.00 4.18
921 933 2.418060 GGGTTGCCATGTTTAAATCCGG 60.418 50.000 0.00 0.00 0.00 5.14
922 934 2.494073 GGTTGCCATGTTTAAATCCGGA 59.506 45.455 6.61 6.61 0.00 5.14
923 935 3.056465 GGTTGCCATGTTTAAATCCGGAA 60.056 43.478 9.01 0.00 0.00 4.30
924 936 3.859411 TGCCATGTTTAAATCCGGAAC 57.141 42.857 9.01 1.28 0.00 3.62
939 951 2.660189 GGAACGTTCGGGAGTTATCA 57.340 50.000 21.34 0.00 0.00 2.15
940 952 3.175109 GGAACGTTCGGGAGTTATCAT 57.825 47.619 21.34 0.00 0.00 2.45
941 953 3.528532 GGAACGTTCGGGAGTTATCATT 58.471 45.455 21.34 0.00 0.00 2.57
942 954 4.685924 GGAACGTTCGGGAGTTATCATTA 58.314 43.478 21.34 0.00 0.00 1.90
943 955 4.505556 GGAACGTTCGGGAGTTATCATTAC 59.494 45.833 21.34 0.00 0.00 1.89
944 956 4.050852 ACGTTCGGGAGTTATCATTACC 57.949 45.455 0.00 0.00 0.00 2.85
1010 1024 1.673923 GGTCCGGCCGGTATATAAAGC 60.674 57.143 41.57 26.57 36.47 3.51
1174 1190 2.226330 TCATGGAAGGGAAACAACGTG 58.774 47.619 0.00 0.00 0.00 4.49
1247 1264 1.673808 ATCGTCCACTACCTTCGCCC 61.674 60.000 0.00 0.00 0.00 6.13
1319 1338 3.762247 CCGACTACCGCCCGGAAA 61.762 66.667 14.44 0.15 45.58 3.13
1340 1359 0.450583 GATCACAGGTACGCACTCGA 59.549 55.000 0.00 0.00 39.41 4.04
1372 1391 2.455674 TCAGCACACACCATGACTAC 57.544 50.000 0.00 0.00 0.00 2.73
1373 1392 1.970640 TCAGCACACACCATGACTACT 59.029 47.619 0.00 0.00 0.00 2.57
1375 1394 3.193479 TCAGCACACACCATGACTACTAG 59.807 47.826 0.00 0.00 0.00 2.57
1670 1728 2.094894 ACCATGTACGAGTACGAGAACG 59.905 50.000 8.62 0.00 42.66 3.95
1672 1730 3.543656 CCATGTACGAGTACGAGAACGAG 60.544 52.174 8.62 0.00 42.66 4.18
1674 1732 3.317150 TGTACGAGTACGAGAACGAGAA 58.683 45.455 8.62 0.00 42.66 2.87
1676 1734 1.462670 ACGAGTACGAGAACGAGAACC 59.537 52.381 0.00 0.00 42.66 3.62
1677 1735 1.526584 CGAGTACGAGAACGAGAACCG 60.527 57.143 0.00 0.00 42.66 4.44
1679 1737 0.110056 GTACGAGAACGAGAACCGCA 60.110 55.000 0.00 0.00 43.32 5.69
1680 1738 0.110056 TACGAGAACGAGAACCGCAC 60.110 55.000 0.00 0.00 43.32 5.34
1681 1739 2.426183 CGAGAACGAGAACCGCACG 61.426 63.158 0.00 0.00 43.32 5.34
1682 1740 1.371389 GAGAACGAGAACCGCACGT 60.371 57.895 0.00 0.00 45.68 4.49
1683 1741 1.335697 GAGAACGAGAACCGCACGTC 61.336 60.000 0.00 0.00 42.96 4.34
1684 1742 2.355481 AACGAGAACCGCACGTCC 60.355 61.111 0.00 0.00 42.96 4.79
1685 1743 4.695231 ACGAGAACCGCACGTCCG 62.695 66.667 0.00 0.00 39.65 4.79
1686 1744 4.394078 CGAGAACCGCACGTCCGA 62.394 66.667 0.00 0.00 0.00 4.55
1687 1745 2.504244 GAGAACCGCACGTCCGAG 60.504 66.667 0.00 0.00 0.00 4.63
1688 1746 3.966026 GAGAACCGCACGTCCGAGG 62.966 68.421 0.00 0.00 0.00 4.63
1756 1832 8.560374 CCGTTGATCTATTTTATTTCCTCTTCC 58.440 37.037 0.00 0.00 0.00 3.46
1766 1842 1.885049 TTCCTCTTCCCTCCTCCATG 58.115 55.000 0.00 0.00 0.00 3.66
1767 1843 0.692419 TCCTCTTCCCTCCTCCATGC 60.692 60.000 0.00 0.00 0.00 4.06
1768 1844 1.445095 CTCTTCCCTCCTCCATGCG 59.555 63.158 0.00 0.00 0.00 4.73
1769 1845 1.306141 TCTTCCCTCCTCCATGCGT 60.306 57.895 0.00 0.00 0.00 5.24
1801 1882 1.067416 TGCATGATAGGCCGACGAC 59.933 57.895 0.00 0.00 0.00 4.34
1802 1883 1.664965 GCATGATAGGCCGACGACC 60.665 63.158 0.00 0.00 0.00 4.79
1803 1884 1.371758 CATGATAGGCCGACGACCG 60.372 63.158 0.00 0.00 38.18 4.79
1804 1885 1.527611 ATGATAGGCCGACGACCGA 60.528 57.895 0.00 0.00 41.76 4.69
1867 2615 2.263741 GCAGCTTGGTGAGTGGGTG 61.264 63.158 3.84 0.00 0.00 4.61
1868 2616 2.113986 AGCTTGGTGAGTGGGTGC 59.886 61.111 0.00 0.00 0.00 5.01
1894 2642 2.085320 ACGATACAGAAGAGTCAGCGT 58.915 47.619 0.00 0.00 0.00 5.07
1971 2719 3.130160 GAAGGGCAAGGCGCAGAG 61.130 66.667 10.83 0.00 44.06 3.35
2035 2783 2.347490 GCGTGGCCAGAGAAAGGA 59.653 61.111 5.11 0.00 0.00 3.36
2042 2790 2.114616 GGCCAGAGAAAGGAGATGAGA 58.885 52.381 0.00 0.00 0.00 3.27
2075 2823 1.134560 ACGATCTAGAGCAAACCGGTC 59.865 52.381 8.04 0.00 42.76 4.79
2158 2906 4.308899 AGACGACTATGACTACAATGGC 57.691 45.455 0.00 0.00 0.00 4.40
2490 3247 1.666011 GGTCTCTGGTGCACTTCGA 59.334 57.895 17.98 9.66 0.00 3.71
2627 3459 2.997303 GGTTTTTGCGTGTCACCTTTTT 59.003 40.909 0.00 0.00 0.00 1.94
2628 3460 3.181525 GGTTTTTGCGTGTCACCTTTTTG 60.182 43.478 0.00 0.00 0.00 2.44
2632 3464 1.542030 TGCGTGTCACCTTTTTGTTGT 59.458 42.857 0.00 0.00 0.00 3.32
2633 3465 2.182014 GCGTGTCACCTTTTTGTTGTC 58.818 47.619 0.00 0.00 0.00 3.18
2634 3466 2.436670 CGTGTCACCTTTTTGTTGTCG 58.563 47.619 0.00 0.00 0.00 4.35
2635 3467 2.094575 CGTGTCACCTTTTTGTTGTCGA 59.905 45.455 0.00 0.00 0.00 4.20
2636 3468 3.680789 GTGTCACCTTTTTGTTGTCGAG 58.319 45.455 0.00 0.00 0.00 4.04
2637 3469 2.680841 TGTCACCTTTTTGTTGTCGAGG 59.319 45.455 0.00 0.00 0.00 4.63
2638 3470 2.940410 GTCACCTTTTTGTTGTCGAGGA 59.060 45.455 0.00 0.00 0.00 3.71
2639 3471 2.940410 TCACCTTTTTGTTGTCGAGGAC 59.060 45.455 0.00 0.00 0.00 3.85
2658 3490 1.139058 ACTCGAGGTCTGTTTTGCTGT 59.861 47.619 18.41 0.00 0.00 4.40
2668 3500 6.924060 AGGTCTGTTTTGCTGTCGTATATATC 59.076 38.462 0.00 0.00 0.00 1.63
2669 3501 6.924060 GGTCTGTTTTGCTGTCGTATATATCT 59.076 38.462 0.00 0.00 0.00 1.98
2672 3504 8.847196 TCTGTTTTGCTGTCGTATATATCTAGT 58.153 33.333 0.00 0.00 0.00 2.57
2675 3507 7.662604 TTTGCTGTCGTATATATCTAGTCGA 57.337 36.000 0.00 0.00 0.00 4.20
2676 3508 6.644191 TGCTGTCGTATATATCTAGTCGAC 57.356 41.667 7.70 7.70 44.75 4.20
2677 3509 5.287992 TGCTGTCGTATATATCTAGTCGACG 59.712 44.000 10.46 0.00 46.54 5.12
2829 4561 3.085208 CGGGAGGTAGCACGTAGTA 57.915 57.895 0.00 0.00 41.61 1.82
2830 4562 0.659957 CGGGAGGTAGCACGTAGTAC 59.340 60.000 0.00 0.00 41.61 2.73
2913 4645 4.328536 ACACCACATCGTAAATTAAGCCA 58.671 39.130 0.00 0.00 0.00 4.75
2914 4646 4.394920 ACACCACATCGTAAATTAAGCCAG 59.605 41.667 0.00 0.00 0.00 4.85
2915 4647 4.394920 CACCACATCGTAAATTAAGCCAGT 59.605 41.667 0.00 0.00 0.00 4.00
2916 4648 5.583061 CACCACATCGTAAATTAAGCCAGTA 59.417 40.000 0.00 0.00 0.00 2.74
2917 4649 5.815740 ACCACATCGTAAATTAAGCCAGTAG 59.184 40.000 0.00 0.00 0.00 2.57
2918 4650 5.815740 CCACATCGTAAATTAAGCCAGTAGT 59.184 40.000 0.00 0.00 0.00 2.73
2919 4651 6.982141 CCACATCGTAAATTAAGCCAGTAGTA 59.018 38.462 0.00 0.00 0.00 1.82
3244 4990 4.015406 TCACTGATGGGCGGCGTT 62.015 61.111 9.37 0.00 0.00 4.84
3484 5230 2.359169 GGTGAGGATCTCGGTGCCA 61.359 63.158 0.00 0.00 34.92 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.308782 AGCTCGTTAATCAAAGATGGTTAAG 57.691 36.000 0.00 0.00 41.55 1.85
1 2 8.038944 ACTAGCTCGTTAATCAAAGATGGTTAA 58.961 33.333 0.00 0.00 39.28 2.01
2 3 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
3 4 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
4 5 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
5 6 6.276847 AGACTAGCTCGTTAATCAAAGATGG 58.723 40.000 0.00 0.00 0.00 3.51
6 7 8.132362 ACTAGACTAGCTCGTTAATCAAAGATG 58.868 37.037 9.52 0.00 0.00 2.90
7 8 8.228035 ACTAGACTAGCTCGTTAATCAAAGAT 57.772 34.615 9.52 0.00 0.00 2.40
8 9 7.627298 ACTAGACTAGCTCGTTAATCAAAGA 57.373 36.000 9.52 0.00 0.00 2.52
9 10 8.828644 TCTACTAGACTAGCTCGTTAATCAAAG 58.171 37.037 9.52 0.00 0.00 2.77
10 11 8.728337 TCTACTAGACTAGCTCGTTAATCAAA 57.272 34.615 9.52 0.00 0.00 2.69
11 12 8.202811 TCTCTACTAGACTAGCTCGTTAATCAA 58.797 37.037 9.52 0.00 0.00 2.57
12 13 7.724287 TCTCTACTAGACTAGCTCGTTAATCA 58.276 38.462 9.52 0.00 0.00 2.57
28 29 5.984926 CGTGTCCCTAGTAAGTCTCTACTAG 59.015 48.000 15.40 15.40 45.92 2.57
29 30 5.163364 CCGTGTCCCTAGTAAGTCTCTACTA 60.163 48.000 0.00 0.00 33.75 1.82
30 31 4.383989 CCGTGTCCCTAGTAAGTCTCTACT 60.384 50.000 0.00 0.00 37.65 2.57
31 32 3.876320 CCGTGTCCCTAGTAAGTCTCTAC 59.124 52.174 0.00 0.00 0.00 2.59
32 33 3.521126 ACCGTGTCCCTAGTAAGTCTCTA 59.479 47.826 0.00 0.00 0.00 2.43
33 34 2.308275 ACCGTGTCCCTAGTAAGTCTCT 59.692 50.000 0.00 0.00 0.00 3.10
34 35 2.422832 CACCGTGTCCCTAGTAAGTCTC 59.577 54.545 0.00 0.00 0.00 3.36
35 36 2.224967 ACACCGTGTCCCTAGTAAGTCT 60.225 50.000 0.00 0.00 0.00 3.24
36 37 2.165998 ACACCGTGTCCCTAGTAAGTC 58.834 52.381 0.00 0.00 0.00 3.01
37 38 2.299326 ACACCGTGTCCCTAGTAAGT 57.701 50.000 0.00 0.00 0.00 2.24
38 39 3.672767 AAACACCGTGTCCCTAGTAAG 57.327 47.619 4.23 0.00 0.00 2.34
39 40 3.134442 ACAAAACACCGTGTCCCTAGTAA 59.866 43.478 4.23 0.00 0.00 2.24
40 41 2.699846 ACAAAACACCGTGTCCCTAGTA 59.300 45.455 4.23 0.00 0.00 1.82
41 42 1.487558 ACAAAACACCGTGTCCCTAGT 59.512 47.619 4.23 0.00 0.00 2.57
42 43 2.140717 GACAAAACACCGTGTCCCTAG 58.859 52.381 4.23 0.00 38.57 3.02
43 44 1.764134 AGACAAAACACCGTGTCCCTA 59.236 47.619 4.23 0.00 44.30 3.53
44 45 0.544697 AGACAAAACACCGTGTCCCT 59.455 50.000 4.23 0.00 44.30 4.20
45 46 2.243602 TAGACAAAACACCGTGTCCC 57.756 50.000 4.23 0.00 44.30 4.46
46 47 3.135994 ACATAGACAAAACACCGTGTCC 58.864 45.455 4.23 0.00 44.30 4.02
47 48 5.063060 GGATACATAGACAAAACACCGTGTC 59.937 44.000 4.23 0.00 43.70 3.67
48 49 4.933400 GGATACATAGACAAAACACCGTGT 59.067 41.667 0.00 0.00 0.00 4.49
49 50 4.932799 TGGATACATAGACAAAACACCGTG 59.067 41.667 0.00 0.00 46.17 4.94
50 51 5.155278 TGGATACATAGACAAAACACCGT 57.845 39.130 0.00 0.00 46.17 4.83
66 67 7.201644 CCAGAAACTTGATACATGTGTGGATAC 60.202 40.741 9.11 0.00 0.00 2.24
67 68 6.823182 CCAGAAACTTGATACATGTGTGGATA 59.177 38.462 9.11 0.00 0.00 2.59
68 69 5.649395 CCAGAAACTTGATACATGTGTGGAT 59.351 40.000 9.11 0.00 0.00 3.41
69 70 5.003160 CCAGAAACTTGATACATGTGTGGA 58.997 41.667 9.11 0.00 0.00 4.02
70 71 4.761739 ACCAGAAACTTGATACATGTGTGG 59.238 41.667 9.11 0.00 0.00 4.17
71 72 5.947228 ACCAGAAACTTGATACATGTGTG 57.053 39.130 9.11 0.00 0.00 3.82
72 73 8.635765 ATTAACCAGAAACTTGATACATGTGT 57.364 30.769 9.11 0.10 0.00 3.72
73 74 9.988350 GTATTAACCAGAAACTTGATACATGTG 57.012 33.333 9.11 0.00 0.00 3.21
74 75 9.733556 TGTATTAACCAGAAACTTGATACATGT 57.266 29.630 2.69 2.69 28.92 3.21
151 152 9.541884 TTCCCTAGAGGCAATAATAAAGTTTTT 57.458 29.630 0.00 0.00 34.51 1.94
152 153 8.967918 GTTCCCTAGAGGCAATAATAAAGTTTT 58.032 33.333 0.00 0.00 34.51 2.43
153 154 8.113462 TGTTCCCTAGAGGCAATAATAAAGTTT 58.887 33.333 0.00 0.00 34.51 2.66
154 155 7.639378 TGTTCCCTAGAGGCAATAATAAAGTT 58.361 34.615 0.00 0.00 34.51 2.66
155 156 7.208064 TGTTCCCTAGAGGCAATAATAAAGT 57.792 36.000 0.00 0.00 34.51 2.66
156 157 8.697507 AATGTTCCCTAGAGGCAATAATAAAG 57.302 34.615 0.00 0.00 34.51 1.85
157 158 9.131791 GAAATGTTCCCTAGAGGCAATAATAAA 57.868 33.333 0.00 0.00 34.51 1.40
158 159 7.724061 GGAAATGTTCCCTAGAGGCAATAATAA 59.276 37.037 0.00 0.00 44.30 1.40
159 160 7.231467 GGAAATGTTCCCTAGAGGCAATAATA 58.769 38.462 0.00 0.00 44.30 0.98
160 161 6.071320 GGAAATGTTCCCTAGAGGCAATAAT 58.929 40.000 0.00 0.00 44.30 1.28
161 162 5.445964 GGAAATGTTCCCTAGAGGCAATAA 58.554 41.667 0.00 0.00 44.30 1.40
162 163 5.048846 GGAAATGTTCCCTAGAGGCAATA 57.951 43.478 0.00 0.00 44.30 1.90
163 164 3.903467 GGAAATGTTCCCTAGAGGCAAT 58.097 45.455 0.00 0.00 44.30 3.56
164 165 3.366052 GGAAATGTTCCCTAGAGGCAA 57.634 47.619 0.00 0.00 44.30 4.52
175 176 3.426695 CCATGCGACTGAAGGAAATGTTC 60.427 47.826 0.00 0.00 0.00 3.18
176 177 2.489329 CCATGCGACTGAAGGAAATGTT 59.511 45.455 0.00 0.00 0.00 2.71
177 178 2.086869 CCATGCGACTGAAGGAAATGT 58.913 47.619 0.00 0.00 0.00 2.71
178 179 1.402968 CCCATGCGACTGAAGGAAATG 59.597 52.381 0.00 0.00 0.00 2.32
179 180 1.683011 CCCCATGCGACTGAAGGAAAT 60.683 52.381 0.00 0.00 0.00 2.17
180 181 0.322456 CCCCATGCGACTGAAGGAAA 60.322 55.000 0.00 0.00 0.00 3.13
181 182 1.299648 CCCCATGCGACTGAAGGAA 59.700 57.895 0.00 0.00 0.00 3.36
182 183 1.918293 ACCCCATGCGACTGAAGGA 60.918 57.895 0.00 0.00 0.00 3.36
183 184 1.746615 CACCCCATGCGACTGAAGG 60.747 63.158 0.00 0.00 0.00 3.46
184 185 1.746615 CCACCCCATGCGACTGAAG 60.747 63.158 0.00 0.00 0.00 3.02
185 186 2.350895 CCACCCCATGCGACTGAA 59.649 61.111 0.00 0.00 0.00 3.02
186 187 2.927856 ACCACCCCATGCGACTGA 60.928 61.111 0.00 0.00 0.00 3.41
187 188 2.747460 CACCACCCCATGCGACTG 60.747 66.667 0.00 0.00 0.00 3.51
188 189 3.249189 ACACCACCCCATGCGACT 61.249 61.111 0.00 0.00 0.00 4.18
213 214 3.558411 GCGCTGCACTCCATCGAC 61.558 66.667 0.00 0.00 35.19 4.20
272 273 1.734477 CCTCCAACTCAGTGACGCG 60.734 63.158 3.53 3.53 0.00 6.01
276 277 1.127567 CACCCCCTCCAACTCAGTGA 61.128 60.000 0.00 0.00 0.00 3.41
280 281 3.636231 CGCACCCCCTCCAACTCA 61.636 66.667 0.00 0.00 0.00 3.41
294 295 3.687102 CCACCTACCCACGACGCA 61.687 66.667 0.00 0.00 0.00 5.24
295 296 3.688159 ACCACCTACCCACGACGC 61.688 66.667 0.00 0.00 0.00 5.19
300 302 1.302511 CACTGCACCACCTACCCAC 60.303 63.158 0.00 0.00 0.00 4.61
301 303 2.525124 CCACTGCACCACCTACCCA 61.525 63.158 0.00 0.00 0.00 4.51
341 343 4.349871 GTCGTTCACACGCGGCAC 62.350 66.667 12.47 0.00 46.70 5.01
346 348 4.955774 ACCCCGTCGTTCACACGC 62.956 66.667 0.00 0.00 46.70 5.34
351 353 3.220999 CTCTGCACCCCGTCGTTCA 62.221 63.158 0.00 0.00 0.00 3.18
359 361 0.890996 CTTCAACCACTCTGCACCCC 60.891 60.000 0.00 0.00 0.00 4.95
360 362 0.179018 ACTTCAACCACTCTGCACCC 60.179 55.000 0.00 0.00 0.00 4.61
403 405 1.059913 CCACTCTCCCCACTCACTTT 58.940 55.000 0.00 0.00 0.00 2.66
407 409 2.607750 GCCCACTCTCCCCACTCA 60.608 66.667 0.00 0.00 0.00 3.41
428 430 2.750657 CCATGCAGTCCTCTCCCCC 61.751 68.421 0.00 0.00 0.00 5.40
443 445 1.849039 CTCCTCTTTCCCCATCACCAT 59.151 52.381 0.00 0.00 0.00 3.55
447 449 1.626356 CGGCTCCTCTTTCCCCATCA 61.626 60.000 0.00 0.00 0.00 3.07
456 458 0.320508 GAACGTTTCCGGCTCCTCTT 60.321 55.000 0.46 0.00 38.78 2.85
458 460 2.092882 CGAACGTTTCCGGCTCCTC 61.093 63.158 0.46 0.00 38.78 3.71
497 499 3.734231 CACGTCACACTCATTAGTCGTTT 59.266 43.478 0.00 0.00 32.12 3.60
503 505 4.485163 TGATGACACGTCACACTCATTAG 58.515 43.478 1.15 0.00 43.11 1.73
506 508 3.059884 GTTGATGACACGTCACACTCAT 58.940 45.455 1.15 0.00 43.11 2.90
507 509 2.100749 AGTTGATGACACGTCACACTCA 59.899 45.455 1.15 0.00 43.11 3.41
511 513 2.100749 ACAGAGTTGATGACACGTCACA 59.899 45.455 1.15 0.64 43.11 3.58
524 526 3.254060 CACGGATCTTGGTACAGAGTTG 58.746 50.000 0.00 0.00 42.39 3.16
526 528 1.204941 GCACGGATCTTGGTACAGAGT 59.795 52.381 0.00 0.00 42.39 3.24
533 535 4.345257 AGATATGTTAGCACGGATCTTGGT 59.655 41.667 0.00 0.00 0.00 3.67
538 540 3.914966 CGTCAGATATGTTAGCACGGATC 59.085 47.826 0.00 0.00 0.00 3.36
544 546 2.693074 TCTGCCGTCAGATATGTTAGCA 59.307 45.455 0.00 2.11 43.95 3.49
570 572 4.256090 GCAATCCCGCCATGACGC 62.256 66.667 0.00 0.00 0.00 5.19
595 597 6.090223 CACAAATGATAAGTGCTACACGTGTA 59.910 38.462 25.88 25.88 39.64 2.90
599 601 5.530519 ACACAAATGATAAGTGCTACACG 57.469 39.130 0.00 0.00 39.64 4.49
626 630 9.754382 GCTTGTGGATCAATCAATGTAATTAAT 57.246 29.630 0.00 0.00 32.63 1.40
628 632 8.291191 TGCTTGTGGATCAATCAATGTAATTA 57.709 30.769 0.00 0.00 32.63 1.40
629 633 7.172868 TGCTTGTGGATCAATCAATGTAATT 57.827 32.000 0.00 0.00 33.99 1.40
704 716 5.510861 CGTTCGGGAGTTATTGGATTCCTAT 60.511 44.000 3.95 4.53 0.00 2.57
705 717 4.202182 CGTTCGGGAGTTATTGGATTCCTA 60.202 45.833 3.95 0.00 0.00 2.94
706 718 3.431766 CGTTCGGGAGTTATTGGATTCCT 60.432 47.826 3.95 0.00 0.00 3.36
707 719 2.870411 CGTTCGGGAGTTATTGGATTCC 59.130 50.000 0.00 0.00 0.00 3.01
708 720 3.528532 ACGTTCGGGAGTTATTGGATTC 58.471 45.455 0.00 0.00 0.00 2.52
709 721 3.622166 ACGTTCGGGAGTTATTGGATT 57.378 42.857 0.00 0.00 0.00 3.01
710 722 3.528532 GAACGTTCGGGAGTTATTGGAT 58.471 45.455 13.36 0.00 0.00 3.41
711 723 2.671914 CGAACGTTCGGGAGTTATTGGA 60.672 50.000 36.53 0.00 46.30 3.53
712 724 1.657094 CGAACGTTCGGGAGTTATTGG 59.343 52.381 36.53 9.59 46.30 3.16
724 736 2.961522 TGCTCAAAATCCGAACGTTC 57.038 45.000 18.47 18.47 0.00 3.95
725 737 3.915437 AATGCTCAAAATCCGAACGTT 57.085 38.095 0.00 0.00 0.00 3.99
726 738 3.666902 CGAAATGCTCAAAATCCGAACGT 60.667 43.478 0.00 0.00 0.00 3.99
727 739 2.840176 CGAAATGCTCAAAATCCGAACG 59.160 45.455 0.00 0.00 0.00 3.95
728 740 3.821841 ACGAAATGCTCAAAATCCGAAC 58.178 40.909 0.00 0.00 0.00 3.95
729 741 3.119990 GGACGAAATGCTCAAAATCCGAA 60.120 43.478 0.00 0.00 0.00 4.30
730 742 2.418628 GGACGAAATGCTCAAAATCCGA 59.581 45.455 0.00 0.00 0.00 4.55
731 743 2.477863 GGGACGAAATGCTCAAAATCCG 60.478 50.000 0.00 0.00 0.00 4.18
732 744 3.150848 GGGACGAAATGCTCAAAATCC 57.849 47.619 0.00 0.00 0.00 3.01
748 760 2.666344 GCCATGTAAAAACGTTCGGGAC 60.666 50.000 0.00 0.00 0.00 4.46
749 761 1.536331 GCCATGTAAAAACGTTCGGGA 59.464 47.619 0.00 0.00 0.00 5.14
750 762 1.267261 TGCCATGTAAAAACGTTCGGG 59.733 47.619 0.00 0.00 0.00 5.14
751 763 2.690173 TGCCATGTAAAAACGTTCGG 57.310 45.000 0.00 0.00 0.00 4.30
752 764 3.623863 AGTTGCCATGTAAAAACGTTCG 58.376 40.909 0.00 0.00 0.00 3.95
753 765 5.959652 AAAGTTGCCATGTAAAAACGTTC 57.040 34.783 0.00 0.00 0.00 3.95
754 766 6.566141 ACTAAAGTTGCCATGTAAAAACGTT 58.434 32.000 0.00 0.00 0.00 3.99
755 767 6.139048 ACTAAAGTTGCCATGTAAAAACGT 57.861 33.333 0.00 0.00 0.00 3.99
756 768 7.009723 ACAAACTAAAGTTGCCATGTAAAAACG 59.990 33.333 0.00 0.00 38.44 3.60
757 769 8.192068 ACAAACTAAAGTTGCCATGTAAAAAC 57.808 30.769 0.00 0.00 38.44 2.43
758 770 9.522804 CTACAAACTAAAGTTGCCATGTAAAAA 57.477 29.630 0.00 0.00 38.44 1.94
759 771 8.138712 CCTACAAACTAAAGTTGCCATGTAAAA 58.861 33.333 0.00 0.00 38.44 1.52
760 772 7.255660 CCCTACAAACTAAAGTTGCCATGTAAA 60.256 37.037 0.00 0.00 38.44 2.01
761 773 6.207810 CCCTACAAACTAAAGTTGCCATGTAA 59.792 38.462 0.00 0.00 38.44 2.41
762 774 5.708230 CCCTACAAACTAAAGTTGCCATGTA 59.292 40.000 0.00 1.35 38.44 2.29
763 775 4.522789 CCCTACAAACTAAAGTTGCCATGT 59.477 41.667 0.00 0.22 38.44 3.21
764 776 4.764823 TCCCTACAAACTAAAGTTGCCATG 59.235 41.667 0.00 0.00 38.44 3.66
765 777 4.993028 TCCCTACAAACTAAAGTTGCCAT 58.007 39.130 0.00 0.00 38.44 4.40
766 778 4.440826 TCCCTACAAACTAAAGTTGCCA 57.559 40.909 0.00 0.00 38.44 4.92
767 779 4.765339 ACATCCCTACAAACTAAAGTTGCC 59.235 41.667 0.00 0.00 38.44 4.52
768 780 5.472137 TGACATCCCTACAAACTAAAGTTGC 59.528 40.000 0.00 0.00 38.44 4.17
769 781 7.228706 AGTTGACATCCCTACAAACTAAAGTTG 59.771 37.037 0.00 0.00 38.44 3.16
770 782 7.287810 AGTTGACATCCCTACAAACTAAAGTT 58.712 34.615 0.00 0.00 40.50 2.66
771 783 6.838382 AGTTGACATCCCTACAAACTAAAGT 58.162 36.000 0.00 0.00 0.00 2.66
772 784 7.745620 AAGTTGACATCCCTACAAACTAAAG 57.254 36.000 0.00 0.00 0.00 1.85
773 785 9.280174 CTAAAGTTGACATCCCTACAAACTAAA 57.720 33.333 0.00 0.00 0.00 1.85
774 786 8.434392 ACTAAAGTTGACATCCCTACAAACTAA 58.566 33.333 0.00 0.00 0.00 2.24
775 787 7.970102 ACTAAAGTTGACATCCCTACAAACTA 58.030 34.615 0.00 0.00 0.00 2.24
776 788 6.838382 ACTAAAGTTGACATCCCTACAAACT 58.162 36.000 0.00 0.00 0.00 2.66
777 789 7.506328 AACTAAAGTTGACATCCCTACAAAC 57.494 36.000 0.00 0.00 36.80 2.93
778 790 9.802039 ATTAACTAAAGTTGACATCCCTACAAA 57.198 29.630 5.62 0.00 38.90 2.83
781 793 9.543783 CCTATTAACTAAAGTTGACATCCCTAC 57.456 37.037 5.62 0.00 38.90 3.18
782 794 8.711170 CCCTATTAACTAAAGTTGACATCCCTA 58.289 37.037 5.62 0.00 38.90 3.53
783 795 7.366551 CCCCTATTAACTAAAGTTGACATCCCT 60.367 40.741 5.62 0.00 38.90 4.20
784 796 6.771267 CCCCTATTAACTAAAGTTGACATCCC 59.229 42.308 5.62 0.00 38.90 3.85
785 797 7.571025 TCCCCTATTAACTAAAGTTGACATCC 58.429 38.462 5.62 0.00 38.90 3.51
786 798 9.057089 CATCCCCTATTAACTAAAGTTGACATC 57.943 37.037 5.62 0.00 38.90 3.06
787 799 7.998964 CCATCCCCTATTAACTAAAGTTGACAT 59.001 37.037 5.62 0.00 38.90 3.06
788 800 7.343357 CCATCCCCTATTAACTAAAGTTGACA 58.657 38.462 5.62 0.00 38.90 3.58
789 801 6.262496 GCCATCCCCTATTAACTAAAGTTGAC 59.738 42.308 5.62 0.00 38.90 3.18
790 802 6.069323 TGCCATCCCCTATTAACTAAAGTTGA 60.069 38.462 5.62 0.00 38.90 3.18
791 803 6.126409 TGCCATCCCCTATTAACTAAAGTTG 58.874 40.000 5.62 0.00 38.90 3.16
792 804 6.335781 TGCCATCCCCTATTAACTAAAGTT 57.664 37.500 0.39 0.39 41.73 2.66
793 805 5.987019 TGCCATCCCCTATTAACTAAAGT 57.013 39.130 0.00 0.00 0.00 2.66
794 806 6.365520 AGTTGCCATCCCCTATTAACTAAAG 58.634 40.000 0.00 0.00 0.00 1.85
795 807 6.335781 AGTTGCCATCCCCTATTAACTAAA 57.664 37.500 0.00 0.00 0.00 1.85
796 808 5.987019 AGTTGCCATCCCCTATTAACTAA 57.013 39.130 0.00 0.00 0.00 2.24
797 809 5.987019 AAGTTGCCATCCCCTATTAACTA 57.013 39.130 0.00 0.00 0.00 2.24
798 810 4.881157 AAGTTGCCATCCCCTATTAACT 57.119 40.909 0.00 0.00 0.00 2.24
799 811 5.932619 AAAAGTTGCCATCCCCTATTAAC 57.067 39.130 0.00 0.00 0.00 2.01
800 812 5.423931 GGAAAAAGTTGCCATCCCCTATTAA 59.576 40.000 0.00 0.00 0.00 1.40
801 813 4.959839 GGAAAAAGTTGCCATCCCCTATTA 59.040 41.667 0.00 0.00 0.00 0.98
802 814 3.774766 GGAAAAAGTTGCCATCCCCTATT 59.225 43.478 0.00 0.00 0.00 1.73
803 815 3.012844 AGGAAAAAGTTGCCATCCCCTAT 59.987 43.478 0.00 0.00 0.00 2.57
804 816 2.381961 AGGAAAAAGTTGCCATCCCCTA 59.618 45.455 0.00 0.00 0.00 3.53
805 817 1.149923 AGGAAAAAGTTGCCATCCCCT 59.850 47.619 0.00 0.00 0.00 4.79
806 818 1.644509 AGGAAAAAGTTGCCATCCCC 58.355 50.000 0.00 0.00 0.00 4.81
807 819 3.769739 AAAGGAAAAAGTTGCCATCCC 57.230 42.857 0.00 0.00 0.00 3.85
808 820 4.211164 CGAAAAAGGAAAAAGTTGCCATCC 59.789 41.667 0.00 0.00 0.00 3.51
809 821 4.808895 ACGAAAAAGGAAAAAGTTGCCATC 59.191 37.500 0.00 0.00 0.00 3.51
810 822 4.765273 ACGAAAAAGGAAAAAGTTGCCAT 58.235 34.783 0.00 0.00 0.00 4.40
811 823 4.195225 ACGAAAAAGGAAAAAGTTGCCA 57.805 36.364 0.00 0.00 0.00 4.92
812 824 6.838198 ATAACGAAAAAGGAAAAAGTTGCC 57.162 33.333 0.00 0.00 0.00 4.52
813 825 8.994881 CAAAATAACGAAAAAGGAAAAAGTTGC 58.005 29.630 0.00 0.00 0.00 4.17
816 828 9.425577 TGACAAAATAACGAAAAAGGAAAAAGT 57.574 25.926 0.00 0.00 0.00 2.66
817 829 9.900264 CTGACAAAATAACGAAAAAGGAAAAAG 57.100 29.630 0.00 0.00 0.00 2.27
818 830 9.640963 TCTGACAAAATAACGAAAAAGGAAAAA 57.359 25.926 0.00 0.00 0.00 1.94
819 831 9.640963 TTCTGACAAAATAACGAAAAAGGAAAA 57.359 25.926 0.00 0.00 0.00 2.29
820 832 9.640963 TTTCTGACAAAATAACGAAAAAGGAAA 57.359 25.926 0.00 0.00 0.00 3.13
821 833 9.640963 TTTTCTGACAAAATAACGAAAAAGGAA 57.359 25.926 0.00 0.00 30.28 3.36
822 834 9.810545 ATTTTCTGACAAAATAACGAAAAAGGA 57.189 25.926 0.00 0.00 35.04 3.36
825 837 9.695884 GCAATTTTCTGACAAAATAACGAAAAA 57.304 25.926 0.00 0.00 35.04 1.94
826 838 8.331742 GGCAATTTTCTGACAAAATAACGAAAA 58.668 29.630 0.00 0.00 35.60 2.29
827 839 7.492669 TGGCAATTTTCTGACAAAATAACGAAA 59.507 29.630 0.00 0.00 28.87 3.46
828 840 6.980978 TGGCAATTTTCTGACAAAATAACGAA 59.019 30.769 0.00 0.00 28.87 3.85
829 841 6.507900 TGGCAATTTTCTGACAAAATAACGA 58.492 32.000 0.00 0.00 28.87 3.85
830 842 6.761731 TGGCAATTTTCTGACAAAATAACG 57.238 33.333 0.00 0.00 28.87 3.18
831 843 8.086851 ACATGGCAATTTTCTGACAAAATAAC 57.913 30.769 0.00 0.00 38.03 1.89
832 844 8.674263 AACATGGCAATTTTCTGACAAAATAA 57.326 26.923 0.00 0.00 38.03 1.40
833 845 8.674263 AAACATGGCAATTTTCTGACAAAATA 57.326 26.923 0.00 0.00 38.03 1.40
834 846 7.255208 GGAAACATGGCAATTTTCTGACAAAAT 60.255 33.333 18.32 0.00 38.03 1.82
835 847 6.038050 GGAAACATGGCAATTTTCTGACAAAA 59.962 34.615 18.32 0.00 38.03 2.44
836 848 5.526846 GGAAACATGGCAATTTTCTGACAAA 59.473 36.000 18.32 0.00 38.03 2.83
837 849 5.055812 GGAAACATGGCAATTTTCTGACAA 58.944 37.500 18.32 0.00 38.03 3.18
838 850 4.502950 GGGAAACATGGCAATTTTCTGACA 60.503 41.667 18.32 0.00 39.14 3.58
839 851 3.996363 GGGAAACATGGCAATTTTCTGAC 59.004 43.478 18.32 9.54 31.21 3.51
840 852 3.903090 AGGGAAACATGGCAATTTTCTGA 59.097 39.130 18.32 0.00 31.21 3.27
841 853 4.276058 AGGGAAACATGGCAATTTTCTG 57.724 40.909 18.32 3.57 31.21 3.02
842 854 6.013466 ACATTAGGGAAACATGGCAATTTTCT 60.013 34.615 18.32 13.01 31.21 2.52
843 855 6.172630 ACATTAGGGAAACATGGCAATTTTC 58.827 36.000 13.20 13.20 0.00 2.29
844 856 6.125589 ACATTAGGGAAACATGGCAATTTT 57.874 33.333 0.00 0.00 0.00 1.82
845 857 5.248020 TGACATTAGGGAAACATGGCAATTT 59.752 36.000 0.00 0.00 32.77 1.82
846 858 4.776837 TGACATTAGGGAAACATGGCAATT 59.223 37.500 0.00 0.00 32.77 2.32
847 859 4.352009 TGACATTAGGGAAACATGGCAAT 58.648 39.130 0.00 0.00 32.77 3.56
848 860 3.772387 TGACATTAGGGAAACATGGCAA 58.228 40.909 0.00 0.00 32.77 4.52
849 861 3.448093 TGACATTAGGGAAACATGGCA 57.552 42.857 0.00 0.00 33.31 4.92
850 862 3.491447 GCATGACATTAGGGAAACATGGC 60.491 47.826 0.00 0.00 36.61 4.40
851 863 3.700539 TGCATGACATTAGGGAAACATGG 59.299 43.478 0.00 0.00 36.61 3.66
852 864 4.987408 TGCATGACATTAGGGAAACATG 57.013 40.909 0.00 0.00 38.33 3.21
853 865 5.481473 AGTTTGCATGACATTAGGGAAACAT 59.519 36.000 17.65 6.12 42.50 2.71
854 866 4.832266 AGTTTGCATGACATTAGGGAAACA 59.168 37.500 17.65 0.00 42.50 2.83
855 867 5.391312 AGTTTGCATGACATTAGGGAAAC 57.609 39.130 11.20 11.20 41.09 2.78
856 868 7.232534 AGTTTAGTTTGCATGACATTAGGGAAA 59.767 33.333 0.00 0.00 0.00 3.13
857 869 6.719370 AGTTTAGTTTGCATGACATTAGGGAA 59.281 34.615 0.00 0.00 0.00 3.97
858 870 6.245408 AGTTTAGTTTGCATGACATTAGGGA 58.755 36.000 0.00 0.00 0.00 4.20
859 871 6.515272 AGTTTAGTTTGCATGACATTAGGG 57.485 37.500 0.00 0.00 0.00 3.53
860 872 7.801547 CAAGTTTAGTTTGCATGACATTAGG 57.198 36.000 0.00 0.00 0.00 2.69
872 884 6.983890 ACATTTTAGGTGGCAAGTTTAGTTTG 59.016 34.615 0.00 0.00 0.00 2.93
873 885 7.119709 ACATTTTAGGTGGCAAGTTTAGTTT 57.880 32.000 0.00 0.00 0.00 2.66
874 886 6.724893 ACATTTTAGGTGGCAAGTTTAGTT 57.275 33.333 0.00 0.00 0.00 2.24
875 887 6.514376 CGAACATTTTAGGTGGCAAGTTTAGT 60.514 38.462 0.00 0.00 0.00 2.24
876 888 5.856455 CGAACATTTTAGGTGGCAAGTTTAG 59.144 40.000 0.00 0.00 0.00 1.85
877 889 5.278561 CCGAACATTTTAGGTGGCAAGTTTA 60.279 40.000 0.00 0.00 0.00 2.01
878 890 4.500716 CCGAACATTTTAGGTGGCAAGTTT 60.501 41.667 0.00 0.00 0.00 2.66
879 891 3.005367 CCGAACATTTTAGGTGGCAAGTT 59.995 43.478 0.00 0.00 0.00 2.66
880 892 2.556622 CCGAACATTTTAGGTGGCAAGT 59.443 45.455 0.00 0.00 0.00 3.16
881 893 2.094752 CCCGAACATTTTAGGTGGCAAG 60.095 50.000 0.00 0.00 0.00 4.01
882 894 1.889829 CCCGAACATTTTAGGTGGCAA 59.110 47.619 0.00 0.00 0.00 4.52
883 895 1.202952 ACCCGAACATTTTAGGTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
884 896 1.541379 ACCCGAACATTTTAGGTGGC 58.459 50.000 0.00 0.00 0.00 5.01
885 897 2.352323 GCAACCCGAACATTTTAGGTGG 60.352 50.000 0.00 0.00 0.00 4.61
886 898 2.352323 GGCAACCCGAACATTTTAGGTG 60.352 50.000 0.00 0.00 0.00 4.00
887 899 1.890489 GGCAACCCGAACATTTTAGGT 59.110 47.619 0.00 0.00 0.00 3.08
888 900 1.889829 TGGCAACCCGAACATTTTAGG 59.110 47.619 0.00 0.00 0.00 2.69
889 901 3.056891 ACATGGCAACCCGAACATTTTAG 60.057 43.478 0.00 0.00 0.00 1.85
890 902 2.894126 ACATGGCAACCCGAACATTTTA 59.106 40.909 0.00 0.00 0.00 1.52
891 903 1.691434 ACATGGCAACCCGAACATTTT 59.309 42.857 0.00 0.00 0.00 1.82
892 904 1.337118 ACATGGCAACCCGAACATTT 58.663 45.000 0.00 0.00 0.00 2.32
893 905 1.337118 AACATGGCAACCCGAACATT 58.663 45.000 0.00 0.00 0.00 2.71
894 906 1.337118 AAACATGGCAACCCGAACAT 58.663 45.000 0.00 0.00 0.00 2.71
895 907 1.982660 TAAACATGGCAACCCGAACA 58.017 45.000 0.00 0.00 0.00 3.18
896 908 3.372660 TTTAAACATGGCAACCCGAAC 57.627 42.857 0.00 0.00 0.00 3.95
897 909 3.056465 GGATTTAAACATGGCAACCCGAA 60.056 43.478 0.00 0.00 0.00 4.30
898 910 2.494073 GGATTTAAACATGGCAACCCGA 59.506 45.455 0.00 0.00 0.00 5.14
899 911 2.733858 CGGATTTAAACATGGCAACCCG 60.734 50.000 0.00 0.00 0.00 5.28
900 912 2.418060 CCGGATTTAAACATGGCAACCC 60.418 50.000 0.00 0.00 0.00 4.11
901 913 2.494073 TCCGGATTTAAACATGGCAACC 59.506 45.455 0.00 0.00 0.00 3.77
902 914 3.859411 TCCGGATTTAAACATGGCAAC 57.141 42.857 0.00 0.00 0.00 4.17
903 915 3.366476 CGTTCCGGATTTAAACATGGCAA 60.366 43.478 4.15 0.00 0.00 4.52
904 916 2.162608 CGTTCCGGATTTAAACATGGCA 59.837 45.455 4.15 0.00 0.00 4.92
905 917 2.162809 ACGTTCCGGATTTAAACATGGC 59.837 45.455 4.15 0.00 0.00 4.40
906 918 4.408694 GAACGTTCCGGATTTAAACATGG 58.591 43.478 17.68 0.00 0.00 3.66
907 919 4.085884 CGAACGTTCCGGATTTAAACATG 58.914 43.478 22.07 0.00 0.00 3.21
908 920 4.330740 CGAACGTTCCGGATTTAAACAT 57.669 40.909 22.07 0.00 0.00 2.71
909 921 3.791993 CGAACGTTCCGGATTTAAACA 57.208 42.857 22.07 0.00 0.00 2.83
918 930 0.174162 ATAACTCCCGAACGTTCCGG 59.826 55.000 24.47 24.47 46.10 5.14
919 931 1.135315 TGATAACTCCCGAACGTTCCG 60.135 52.381 22.07 15.50 0.00 4.30
920 932 2.660189 TGATAACTCCCGAACGTTCC 57.340 50.000 22.07 5.66 0.00 3.62
921 933 4.505556 GGTAATGATAACTCCCGAACGTTC 59.494 45.833 18.47 18.47 0.00 3.95
922 934 4.436332 GGTAATGATAACTCCCGAACGTT 58.564 43.478 0.00 0.00 0.00 3.99
923 935 3.489738 CGGTAATGATAACTCCCGAACGT 60.490 47.826 0.00 0.00 37.66 3.99
924 936 3.047796 CGGTAATGATAACTCCCGAACG 58.952 50.000 0.00 0.00 37.66 3.95
925 937 4.050852 ACGGTAATGATAACTCCCGAAC 57.949 45.455 2.57 0.00 38.75 3.95
926 938 5.591099 GTTACGGTAATGATAACTCCCGAA 58.409 41.667 3.59 0.00 38.75 4.30
927 939 4.261155 CGTTACGGTAATGATAACTCCCGA 60.261 45.833 13.61 0.00 38.75 5.14
928 940 3.976942 CGTTACGGTAATGATAACTCCCG 59.023 47.826 13.61 0.00 41.09 5.14
929 941 4.301628 CCGTTACGGTAATGATAACTCCC 58.698 47.826 16.53 0.00 42.73 4.30
930 942 4.301628 CCCGTTACGGTAATGATAACTCC 58.698 47.826 22.78 0.00 46.80 3.85
931 943 4.301628 CCCCGTTACGGTAATGATAACTC 58.698 47.826 22.78 0.00 46.80 3.01
932 944 3.070015 CCCCCGTTACGGTAATGATAACT 59.930 47.826 22.78 0.00 46.80 2.24
933 945 3.069443 TCCCCCGTTACGGTAATGATAAC 59.931 47.826 22.78 0.92 46.80 1.89
934 946 3.303938 TCCCCCGTTACGGTAATGATAA 58.696 45.455 22.78 2.16 46.80 1.75
935 947 2.892852 CTCCCCCGTTACGGTAATGATA 59.107 50.000 22.78 0.06 46.80 2.15
936 948 1.690352 CTCCCCCGTTACGGTAATGAT 59.310 52.381 22.78 0.00 46.80 2.45
937 949 1.113788 CTCCCCCGTTACGGTAATGA 58.886 55.000 22.78 11.51 46.80 2.57
938 950 0.826062 ACTCCCCCGTTACGGTAATG 59.174 55.000 22.78 12.20 46.80 1.90
939 951 1.114627 GACTCCCCCGTTACGGTAAT 58.885 55.000 22.78 3.05 46.80 1.89
940 952 0.970427 GGACTCCCCCGTTACGGTAA 60.970 60.000 22.78 6.45 46.80 2.85
941 953 1.379843 GGACTCCCCCGTTACGGTA 60.380 63.158 22.78 6.79 46.80 4.02
942 954 2.681421 GGACTCCCCCGTTACGGT 60.681 66.667 22.78 2.95 46.80 4.83
997 1011 3.119743 TCCGACGATGCTTTATATACCGG 60.120 47.826 0.00 0.00 35.07 5.28
1076 1092 1.812507 GCCGCGGTTTTAGGTCGAT 60.813 57.895 28.70 0.00 0.00 3.59
1174 1190 0.315251 GGAGGCAGGTTCAGCAAAAC 59.685 55.000 0.00 0.00 0.00 2.43
1318 1337 2.671351 CGAGTGCGTACCTGTGATCTTT 60.671 50.000 0.00 0.00 0.00 2.52
1319 1338 1.135373 CGAGTGCGTACCTGTGATCTT 60.135 52.381 0.00 0.00 0.00 2.40
1340 1359 2.104451 GTGTGCTGATGATGGGAGAGAT 59.896 50.000 0.00 0.00 0.00 2.75
1372 1391 5.476599 TCCAAATCAATCAACCCAACACTAG 59.523 40.000 0.00 0.00 0.00 2.57
1373 1392 5.389520 TCCAAATCAATCAACCCAACACTA 58.610 37.500 0.00 0.00 0.00 2.74
1375 1394 4.599047 TCCAAATCAATCAACCCAACAC 57.401 40.909 0.00 0.00 0.00 3.32
1670 1728 2.504244 CTCGGACGTGCGGTTCTC 60.504 66.667 29.10 0.00 0.00 2.87
1677 1735 4.803426 CCTCTGCCTCGGACGTGC 62.803 72.222 0.00 0.00 0.00 5.34
1680 1738 4.504916 CTGCCTCTGCCTCGGACG 62.505 72.222 0.00 0.00 36.33 4.79
1681 1739 3.071206 TCTGCCTCTGCCTCGGAC 61.071 66.667 0.00 0.00 36.33 4.79
1682 1740 2.757508 CTCTGCCTCTGCCTCGGA 60.758 66.667 0.00 0.00 36.33 4.55
1683 1741 3.847602 CCTCTGCCTCTGCCTCGG 61.848 72.222 0.00 0.00 36.33 4.63
1684 1742 4.527583 GCCTCTGCCTCTGCCTCG 62.528 72.222 0.00 0.00 36.33 4.63
1756 1832 2.187946 GGACACGCATGGAGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
1790 1871 1.442526 GATCTTCGGTCGTCGGCCTA 61.443 60.000 15.06 0.00 39.77 3.93
1826 1907 5.611919 CGATGCAACAAATCATATACGGAG 58.388 41.667 0.00 0.00 0.00 4.63
1827 1908 4.084066 GCGATGCAACAAATCATATACGGA 60.084 41.667 0.00 0.00 0.00 4.69
1828 1909 4.151070 GCGATGCAACAAATCATATACGG 58.849 43.478 0.00 0.00 0.00 4.02
1829 1910 4.771360 TGCGATGCAACAAATCATATACG 58.229 39.130 0.00 0.00 34.76 3.06
1830 1911 4.614284 GCTGCGATGCAACAAATCATATAC 59.386 41.667 0.00 0.00 38.41 1.47
1867 2615 1.923204 CTCTTCTGTATCGTGCACAGC 59.077 52.381 18.64 3.88 42.58 4.40
1868 2616 3.175152 GACTCTTCTGTATCGTGCACAG 58.825 50.000 18.64 9.95 43.92 3.66
1894 2642 1.268335 GCCTTTTTCTTCACGTCGCAA 60.268 47.619 0.00 0.00 0.00 4.85
1901 2649 0.039165 CCGCCTGCCTTTTTCTTCAC 60.039 55.000 0.00 0.00 0.00 3.18
1902 2650 1.805428 GCCGCCTGCCTTTTTCTTCA 61.805 55.000 0.00 0.00 0.00 3.02
2026 2774 3.623960 CGTACGTCTCATCTCCTTTCTCT 59.376 47.826 7.22 0.00 0.00 3.10
2034 2782 2.093310 TCGAACACGTACGTCTCATCTC 59.907 50.000 19.94 7.74 0.00 2.75
2035 2783 2.071540 TCGAACACGTACGTCTCATCT 58.928 47.619 19.94 0.00 0.00 2.90
2059 2807 1.214589 GCGACCGGTTTGCTCTAGA 59.785 57.895 21.55 0.00 0.00 2.43
2075 2823 1.216710 GTGGTCTCTTCCTGGAGCG 59.783 63.158 0.00 0.00 33.70 5.03
2078 2826 2.182827 CATCTGTGGTCTCTTCCTGGA 58.817 52.381 0.00 0.00 0.00 3.86
2398 3155 4.745751 TTAGTGGTTCCGGCGGCG 62.746 66.667 26.12 26.12 0.00 6.46
2404 3161 1.468520 CATGGCAAGTTAGTGGTTCCG 59.531 52.381 0.00 0.00 0.00 4.30
2413 3170 0.676466 CCGTGCTCCATGGCAAGTTA 60.676 55.000 6.96 0.00 44.18 2.24
2490 3247 0.694444 ATAGGCTCCCCGAACCACAT 60.694 55.000 0.00 0.00 35.76 3.21
2637 3469 1.795286 CAGCAAAACAGACCTCGAGTC 59.205 52.381 12.31 9.11 46.71 3.36
2638 3470 1.139058 ACAGCAAAACAGACCTCGAGT 59.861 47.619 12.31 0.00 0.00 4.18
2639 3471 1.795286 GACAGCAAAACAGACCTCGAG 59.205 52.381 5.13 5.13 0.00 4.04
2658 3490 3.241553 GCGCGTCGACTAGATATATACGA 59.758 47.826 14.70 0.00 0.00 3.43
2668 3500 1.008424 ATCATGGCGCGTCGACTAG 60.008 57.895 14.70 8.35 35.04 2.57
2669 3501 1.299089 CATCATGGCGCGTCGACTA 60.299 57.895 14.70 0.00 35.04 2.59
2828 4560 3.006323 GGATCGAGGAGGAGTACGTAGTA 59.994 52.174 2.11 0.00 45.11 1.82
2830 4562 2.224233 TGGATCGAGGAGGAGTACGTAG 60.224 54.545 0.00 0.00 0.00 3.51
2913 4645 9.799106 TCAAACCAGTACTTAGTACTTACTACT 57.201 33.333 21.03 0.00 45.68 2.57
2916 4648 8.033626 GCATCAAACCAGTACTTAGTACTTACT 58.966 37.037 21.03 6.73 45.68 2.24
2917 4649 7.816031 TGCATCAAACCAGTACTTAGTACTTAC 59.184 37.037 21.03 2.49 45.68 2.34
2918 4650 7.898918 TGCATCAAACCAGTACTTAGTACTTA 58.101 34.615 21.03 4.99 45.68 2.24
2919 4651 6.765403 TGCATCAAACCAGTACTTAGTACTT 58.235 36.000 21.03 6.61 45.68 2.24
2989 4735 1.301401 GGCCATCCACGCGCTTATA 60.301 57.895 5.73 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.