Multiple sequence alignment - TraesCS2D01G458900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G458900 chr2D 100.000 2447 0 0 1 2447 565688850 565686404 0.000000e+00 4482
1 TraesCS2D01G458900 chr2D 98.349 424 7 0 511 934 603629920 603630343 0.000000e+00 745
2 TraesCS2D01G458900 chr2D 89.655 551 30 9 1140 1688 565742925 565742400 0.000000e+00 676
3 TraesCS2D01G458900 chr2D 90.741 324 25 5 1659 1978 565687029 565686707 6.250000e-116 427
4 TraesCS2D01G458900 chr2D 90.741 324 25 5 1822 2144 565687192 565686873 6.250000e-116 427
5 TraesCS2D01G458900 chr2D 92.920 226 16 0 932 1157 565743491 565743266 1.810000e-86 329
6 TraesCS2D01G458900 chr2B 87.485 807 69 13 932 1730 678007463 678006681 0.000000e+00 902
7 TraesCS2D01G458900 chr2B 91.833 551 41 2 932 1482 677964156 677964702 0.000000e+00 765
8 TraesCS2D01G458900 chr2B 84.450 373 51 5 2051 2420 677966007 677966375 6.430000e-96 361
9 TraesCS2D01G458900 chr2B 92.105 76 4 2 1984 2059 678006754 678006681 3.330000e-19 106
10 TraesCS2D01G458900 chrUn 98.196 499 9 0 1 499 316692739 316693237 0.000000e+00 872
11 TraesCS2D01G458900 chrUn 96.393 499 18 0 1 499 316691610 316692108 0.000000e+00 822
12 TraesCS2D01G458900 chrUn 96.192 499 19 0 1 499 300119949 300119451 0.000000e+00 817
13 TraesCS2D01G458900 chrUn 95.992 499 20 0 1 499 201101535 201102033 0.000000e+00 811
14 TraesCS2D01G458900 chrUn 95.992 499 20 0 1 499 232830553 232831051 0.000000e+00 811
15 TraesCS2D01G458900 chrUn 95.992 499 20 0 1 499 232831920 232832418 0.000000e+00 811
16 TraesCS2D01G458900 chrUn 95.992 499 19 1 1 499 255998313 255998810 0.000000e+00 809
17 TraesCS2D01G458900 chrUn 95.992 499 19 1 1 499 256005016 256005513 0.000000e+00 809
18 TraesCS2D01G458900 chrUn 95.992 499 19 1 1 499 471105015 471105512 0.000000e+00 809
19 TraesCS2D01G458900 chrUn 98.113 424 8 0 511 934 154662374 154662797 0.000000e+00 739
20 TraesCS2D01G458900 chrUn 98.113 424 8 0 511 934 201101313 201101736 0.000000e+00 739
21 TraesCS2D01G458900 chrUn 98.113 424 8 0 511 934 232830331 232830754 0.000000e+00 739
22 TraesCS2D01G458900 chrUn 98.113 424 8 0 511 934 232831698 232832121 0.000000e+00 739
23 TraesCS2D01G458900 chrUn 98.113 424 8 0 511 934 284485882 284485459 0.000000e+00 739
24 TraesCS2D01G458900 chrUn 98.113 424 8 0 511 934 396674865 396674442 0.000000e+00 739
25 TraesCS2D01G458900 chr2A 89.124 708 39 12 932 1635 705994988 705994315 0.000000e+00 846
26 TraesCS2D01G458900 chr7D 95.992 499 20 0 1 499 588945676 588945178 0.000000e+00 811
27 TraesCS2D01G458900 chr7D 98.113 424 8 0 511 934 588945898 588945475 0.000000e+00 739
28 TraesCS2D01G458900 chr1D 97.877 424 9 0 511 934 443812388 443812811 0.000000e+00 734


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G458900 chr2D 565686404 565688850 2446 True 1778.666667 4482 93.827333 1 2447 3 chr2D.!!$R1 2446
1 TraesCS2D01G458900 chr2D 565742400 565743491 1091 True 502.500000 676 91.287500 932 1688 2 chr2D.!!$R2 756
2 TraesCS2D01G458900 chr2B 677964156 677966375 2219 False 563.000000 765 88.141500 932 2420 2 chr2B.!!$F1 1488
3 TraesCS2D01G458900 chr2B 678006681 678007463 782 True 504.000000 902 89.795000 932 2059 2 chr2B.!!$R1 1127
4 TraesCS2D01G458900 chrUn 316691610 316693237 1627 False 847.000000 872 97.294500 1 499 2 chrUn.!!$F7 498
5 TraesCS2D01G458900 chrUn 201101313 201102033 720 False 775.000000 811 97.052500 1 934 2 chrUn.!!$F5 933
6 TraesCS2D01G458900 chrUn 232830331 232832418 2087 False 775.000000 811 97.052500 1 934 4 chrUn.!!$F6 933
7 TraesCS2D01G458900 chr2A 705994315 705994988 673 True 846.000000 846 89.124000 932 1635 1 chr2A.!!$R1 703
8 TraesCS2D01G458900 chr7D 588945178 588945898 720 True 775.000000 811 97.052500 1 934 2 chr7D.!!$R1 933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 2726 1.078497 CGGAGCTGTATGGTGCCAA 60.078 57.895 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 5518 0.038251 TTCTTCATGCAGAGTCGCGT 60.038 50.0 5.77 0.0 33.35 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.974368 TGTCAGAACGTGTTGGAAATTT 57.026 36.364 0.00 0.00 0.00 1.82
100 101 5.297527 TCGCTTTGAATGATGCATACTGAAT 59.702 36.000 0.00 0.00 0.00 2.57
159 160 3.708563 TTGAAGTGCCTTTGTAACAGC 57.291 42.857 0.00 0.00 0.00 4.40
173 517 1.333177 AACAGCTGAGTTCTCGTCCT 58.667 50.000 23.35 0.00 0.00 3.85
176 520 2.490115 ACAGCTGAGTTCTCGTCCTAAG 59.510 50.000 23.35 0.00 0.00 2.18
230 574 3.244105 CGAGGTGCGTCCAGTTTG 58.756 61.111 0.75 0.00 39.02 2.93
231 575 1.594293 CGAGGTGCGTCCAGTTTGT 60.594 57.895 0.75 0.00 39.02 2.83
273 617 2.114670 GCACATGCTATGCGGGTGT 61.115 57.895 12.46 3.36 37.46 4.16
352 696 4.394920 TCAATTTCACCGTCATTTAGCTCC 59.605 41.667 0.00 0.00 0.00 4.70
433 777 3.306973 TGATGACGTCGCTTTGAATGATC 59.693 43.478 11.62 4.77 0.00 2.92
434 778 2.682836 TGACGTCGCTTTGAATGATCA 58.317 42.857 11.62 0.00 0.00 2.92
467 1492 5.296748 GCAAAAATAGGCTGGAGTTCAAAA 58.703 37.500 0.00 0.00 0.00 2.44
499 1524 2.790433 ACATTGAAGTGCCCGTGTAAT 58.210 42.857 0.00 0.00 0.00 1.89
639 2061 1.810532 GCCGTGACCCTCTCTACTG 59.189 63.158 0.00 0.00 0.00 2.74
801 2223 4.974368 TGTCAGAACGTGTTGGAAATTT 57.026 36.364 0.00 0.00 0.00 1.82
829 2251 4.494690 CGTCGCTTTGAATGATGCATACTT 60.495 41.667 0.00 0.00 0.00 2.24
888 2653 2.790433 ACATTGAAGTGCCCGTGTAAT 58.210 42.857 0.00 0.00 0.00 1.89
959 2726 1.078497 CGGAGCTGTATGGTGCCAA 60.078 57.895 0.00 0.00 0.00 4.52
971 2738 1.988107 TGGTGCCAAGAGAGGAGAAAT 59.012 47.619 0.00 0.00 0.00 2.17
997 2764 1.742146 GGTCGTATTACCGTCCCCC 59.258 63.158 0.00 0.00 31.15 5.40
1030 2797 2.604686 TGTTCGAGGCCCTGCTCT 60.605 61.111 0.00 0.00 0.00 4.09
1036 2803 1.134401 TCGAGGCCCTGCTCTATTTTG 60.134 52.381 0.00 0.00 0.00 2.44
1070 2837 2.124151 GCCCGCCATGGTTGATCT 60.124 61.111 14.67 0.00 35.15 2.75
1148 3273 1.153005 CCATGGAGAGGCTCAAGGC 60.153 63.158 18.26 2.76 41.43 4.35
1186 3311 3.499048 CTCTGCAAGAACATTGATGCAC 58.501 45.455 0.00 0.00 46.34 4.57
1209 3334 2.358615 GTGATGACCACGCTGGCA 60.359 61.111 4.23 0.00 42.67 4.92
1341 3466 5.771666 TGATCTCAAAGCAACATCTCCTTTT 59.228 36.000 0.00 0.00 0.00 2.27
1356 3481 9.533253 ACATCTCCTTTTGTTTTAGTTGAAATG 57.467 29.630 0.00 0.00 0.00 2.32
1357 3482 9.533253 CATCTCCTTTTGTTTTAGTTGAAATGT 57.467 29.630 0.00 0.00 0.00 2.71
1359 3484 9.364989 TCTCCTTTTGTTTTAGTTGAAATGTTG 57.635 29.630 0.00 0.00 0.00 3.33
1360 3485 8.485976 TCCTTTTGTTTTAGTTGAAATGTTGG 57.514 30.769 0.00 0.00 0.00 3.77
1361 3486 8.314751 TCCTTTTGTTTTAGTTGAAATGTTGGA 58.685 29.630 0.00 0.00 0.00 3.53
1362 3487 8.603181 CCTTTTGTTTTAGTTGAAATGTTGGAG 58.397 33.333 0.00 0.00 0.00 3.86
1363 3488 9.364989 CTTTTGTTTTAGTTGAAATGTTGGAGA 57.635 29.630 0.00 0.00 0.00 3.71
1364 3489 9.712305 TTTTGTTTTAGTTGAAATGTTGGAGAA 57.288 25.926 0.00 0.00 0.00 2.87
1365 3490 8.925161 TTGTTTTAGTTGAAATGTTGGAGAAG 57.075 30.769 0.00 0.00 0.00 2.85
1366 3491 7.488322 TGTTTTAGTTGAAATGTTGGAGAAGG 58.512 34.615 0.00 0.00 0.00 3.46
1407 3545 5.789521 TCAAAGTCGTCAGTTCATATTGGA 58.210 37.500 0.00 0.00 0.00 3.53
1421 3559 8.806146 AGTTCATATTGGAAGTTTAGTGCAAAT 58.194 29.630 0.00 0.00 29.66 2.32
1459 3599 9.667107 TCAGGATGAATTAGTTTTACTTGGTAG 57.333 33.333 0.00 0.00 45.97 3.18
1489 3629 3.125146 CGATCGGCAATCAAAGTCTTCAA 59.875 43.478 7.38 0.00 33.65 2.69
1533 3673 6.586463 TCGCATAACTAGCAACTTGATATAGC 59.414 38.462 0.00 0.00 0.00 2.97
1534 3674 6.453003 CGCATAACTAGCAACTTGATATAGCG 60.453 42.308 0.00 0.00 0.00 4.26
1535 3675 6.586463 GCATAACTAGCAACTTGATATAGCGA 59.414 38.462 0.00 0.00 0.00 4.93
1536 3676 7.201393 GCATAACTAGCAACTTGATATAGCGAG 60.201 40.741 3.59 3.59 34.70 5.03
1537 3677 5.776173 ACTAGCAACTTGATATAGCGAGT 57.224 39.130 4.99 4.99 36.55 4.18
1538 3678 6.879276 ACTAGCAACTTGATATAGCGAGTA 57.121 37.500 11.26 0.00 38.95 2.59
1539 3679 6.670233 ACTAGCAACTTGATATAGCGAGTAC 58.330 40.000 11.26 7.17 38.95 2.73
1540 3680 5.776173 AGCAACTTGATATAGCGAGTACT 57.224 39.130 11.26 9.19 32.26 2.73
1541 3681 5.764131 AGCAACTTGATATAGCGAGTACTC 58.236 41.667 13.18 13.18 32.26 2.59
1542 3682 5.533154 AGCAACTTGATATAGCGAGTACTCT 59.467 40.000 20.34 5.62 32.26 3.24
1543 3683 5.627367 GCAACTTGATATAGCGAGTACTCTG 59.373 44.000 20.34 14.37 32.26 3.35
1544 3684 5.365403 ACTTGATATAGCGAGTACTCTGC 57.635 43.478 23.43 23.43 30.76 4.26
1545 3685 5.067273 ACTTGATATAGCGAGTACTCTGCT 58.933 41.667 30.70 30.70 40.50 4.24
1546 3686 6.231951 ACTTGATATAGCGAGTACTCTGCTA 58.768 40.000 32.10 32.10 41.75 3.49
1547 3687 6.882140 ACTTGATATAGCGAGTACTCTGCTAT 59.118 38.462 36.15 36.15 45.18 2.97
1548 3688 8.041919 ACTTGATATAGCGAGTACTCTGCTATA 58.958 37.037 37.11 37.11 45.94 1.31
1549 3689 8.426881 TTGATATAGCGAGTACTCTGCTATAG 57.573 38.462 37.24 21.57 45.59 1.31
1550 3690 6.480651 TGATATAGCGAGTACTCTGCTATAGC 59.519 42.308 37.87 37.87 45.59 2.97
1615 3755 3.511934 GGTGCTTCAGGAAGAGAAGTAGA 59.488 47.826 13.01 0.00 43.36 2.59
1635 3781 8.816640 AGTAGATTTGTTTTGCCAACTATTTG 57.183 30.769 0.00 0.00 0.00 2.32
1657 3803 6.293004 TGGTTTTCTCAAAGATGTTGGTTT 57.707 33.333 0.00 0.00 0.00 3.27
1703 3849 7.529880 AATGCTGCTTTATTGAACAATAAGC 57.470 32.000 20.75 20.75 42.26 3.09
1704 3850 6.271488 TGCTGCTTTATTGAACAATAAGCT 57.729 33.333 23.92 0.00 42.26 3.74
1707 3853 8.469200 TGCTGCTTTATTGAACAATAAGCTTAT 58.531 29.630 23.92 13.37 42.26 1.73
1708 3854 8.962111 GCTGCTTTATTGAACAATAAGCTTATC 58.038 33.333 19.11 8.50 42.26 1.75
1719 3865 9.657121 GAACAATAAGCTTATCTTTGCTATCAC 57.343 33.333 19.11 0.00 38.75 3.06
1720 3866 7.855545 ACAATAAGCTTATCTTTGCTATCACG 58.144 34.615 19.11 0.00 38.75 4.35
1721 3867 7.710907 ACAATAAGCTTATCTTTGCTATCACGA 59.289 33.333 19.11 0.00 38.75 4.35
1722 3868 5.975410 AAGCTTATCTTTGCTATCACGAC 57.025 39.130 0.00 0.00 38.75 4.34
1723 3869 5.011090 AGCTTATCTTTGCTATCACGACA 57.989 39.130 0.00 0.00 37.81 4.35
1724 3870 5.419542 AGCTTATCTTTGCTATCACGACAA 58.580 37.500 0.00 0.00 37.81 3.18
1726 3872 6.371548 AGCTTATCTTTGCTATCACGACAAAA 59.628 34.615 0.00 0.00 37.81 2.44
1745 3891 3.385193 AAAACACCAACCAAGCTATGC 57.615 42.857 0.00 0.00 0.00 3.14
1746 3892 1.993956 AACACCAACCAAGCTATGCA 58.006 45.000 0.00 0.00 0.00 3.96
1747 3893 1.993956 ACACCAACCAAGCTATGCAA 58.006 45.000 0.00 0.00 0.00 4.08
1748 3894 1.888512 ACACCAACCAAGCTATGCAAG 59.111 47.619 0.00 0.00 0.00 4.01
1749 3895 2.161855 CACCAACCAAGCTATGCAAGA 58.838 47.619 0.00 0.00 0.00 3.02
1750 3896 2.163010 CACCAACCAAGCTATGCAAGAG 59.837 50.000 0.00 0.00 0.00 2.85
1751 3897 2.040278 ACCAACCAAGCTATGCAAGAGA 59.960 45.455 3.25 0.00 0.00 3.10
1752 3898 3.285484 CCAACCAAGCTATGCAAGAGAT 58.715 45.455 3.25 0.00 0.00 2.75
1753 3899 3.066342 CCAACCAAGCTATGCAAGAGATG 59.934 47.826 3.25 1.81 0.00 2.90
1755 3901 3.806380 ACCAAGCTATGCAAGAGATGAG 58.194 45.455 3.25 0.00 0.00 2.90
1756 3902 2.548904 CCAAGCTATGCAAGAGATGAGC 59.451 50.000 3.25 0.00 0.00 4.26
1757 3903 2.151881 AGCTATGCAAGAGATGAGCG 57.848 50.000 3.25 0.00 35.09 5.03
1758 3904 1.411977 AGCTATGCAAGAGATGAGCGT 59.588 47.619 3.25 0.00 35.09 5.07
1759 3905 1.791785 GCTATGCAAGAGATGAGCGTC 59.208 52.381 3.25 0.00 0.00 5.19
1760 3906 2.800985 GCTATGCAAGAGATGAGCGTCA 60.801 50.000 3.25 0.00 0.00 4.35
1761 3907 2.391616 ATGCAAGAGATGAGCGTCAA 57.608 45.000 0.00 0.00 0.00 3.18
1762 3908 2.168326 TGCAAGAGATGAGCGTCAAA 57.832 45.000 0.00 0.00 0.00 2.69
1763 3909 2.493035 TGCAAGAGATGAGCGTCAAAA 58.507 42.857 0.00 0.00 0.00 2.44
1764 3910 2.481568 TGCAAGAGATGAGCGTCAAAAG 59.518 45.455 0.00 0.00 0.00 2.27
1765 3911 2.738846 GCAAGAGATGAGCGTCAAAAGA 59.261 45.455 0.00 0.00 0.00 2.52
1766 3912 3.187227 GCAAGAGATGAGCGTCAAAAGAA 59.813 43.478 0.00 0.00 0.00 2.52
1768 3914 2.999355 AGAGATGAGCGTCAAAAGAAGC 59.001 45.455 0.00 0.00 0.00 3.86
1769 3915 2.738846 GAGATGAGCGTCAAAAGAAGCA 59.261 45.455 6.21 0.00 32.08 3.91
1771 3917 3.188048 AGATGAGCGTCAAAAGAAGCAAG 59.812 43.478 6.21 0.00 32.08 4.01
1772 3918 1.002468 TGAGCGTCAAAAGAAGCAAGC 60.002 47.619 6.21 0.00 32.08 4.01
1773 3919 1.002468 GAGCGTCAAAAGAAGCAAGCA 60.002 47.619 6.21 0.00 32.08 3.91
1775 3921 1.783140 GCGTCAAAAGAAGCAAGCAAG 59.217 47.619 0.00 0.00 0.00 4.01
1776 3922 2.796032 GCGTCAAAAGAAGCAAGCAAGT 60.796 45.455 0.00 0.00 0.00 3.16
1777 3923 3.548014 GCGTCAAAAGAAGCAAGCAAGTA 60.548 43.478 0.00 0.00 0.00 2.24
1779 3925 4.290969 GTCAAAAGAAGCAAGCAAGTACC 58.709 43.478 0.00 0.00 0.00 3.34
1780 3926 3.003275 TCAAAAGAAGCAAGCAAGTACCG 59.997 43.478 0.00 0.00 0.00 4.02
1781 3927 2.543777 AAGAAGCAAGCAAGTACCGA 57.456 45.000 0.00 0.00 0.00 4.69
1782 3928 2.770164 AGAAGCAAGCAAGTACCGAT 57.230 45.000 0.00 0.00 0.00 4.18
1783 3929 3.059352 AGAAGCAAGCAAGTACCGATT 57.941 42.857 0.00 0.00 0.00 3.34
1784 3930 4.202245 AGAAGCAAGCAAGTACCGATTA 57.798 40.909 0.00 0.00 0.00 1.75
1785 3931 4.770795 AGAAGCAAGCAAGTACCGATTAT 58.229 39.130 0.00 0.00 0.00 1.28
1786 3932 5.914033 AGAAGCAAGCAAGTACCGATTATA 58.086 37.500 0.00 0.00 0.00 0.98
1787 3933 5.986135 AGAAGCAAGCAAGTACCGATTATAG 59.014 40.000 0.00 0.00 0.00 1.31
1788 3934 4.632153 AGCAAGCAAGTACCGATTATAGG 58.368 43.478 0.00 0.00 0.00 2.57
1789 3935 3.746492 GCAAGCAAGTACCGATTATAGGG 59.254 47.826 0.00 0.00 0.00 3.53
1790 3936 4.315803 CAAGCAAGTACCGATTATAGGGG 58.684 47.826 0.00 0.00 0.00 4.79
1791 3937 3.853207 AGCAAGTACCGATTATAGGGGA 58.147 45.455 0.00 0.00 0.00 4.81
1796 4580 6.295462 GCAAGTACCGATTATAGGGGAATGTA 60.295 42.308 0.00 0.00 0.00 2.29
1798 4582 6.559429 AGTACCGATTATAGGGGAATGTACT 58.441 40.000 0.00 0.00 33.49 2.73
1799 4583 7.702785 AGTACCGATTATAGGGGAATGTACTA 58.297 38.462 0.00 0.00 35.80 1.82
1800 4584 8.172741 AGTACCGATTATAGGGGAATGTACTAA 58.827 37.037 0.00 0.00 35.80 2.24
1801 4585 7.860649 ACCGATTATAGGGGAATGTACTAAA 57.139 36.000 0.00 0.00 0.00 1.85
1805 4589 8.985805 CGATTATAGGGGAATGTACTAAACAAC 58.014 37.037 0.00 0.00 42.70 3.32
1811 4595 6.837048 AGGGGAATGTACTAAACAACAAAACT 59.163 34.615 0.00 0.00 42.70 2.66
1812 4596 8.000127 AGGGGAATGTACTAAACAACAAAACTA 59.000 33.333 0.00 0.00 42.70 2.24
1813 4597 8.631797 GGGGAATGTACTAAACAACAAAACTAA 58.368 33.333 0.00 0.00 42.70 2.24
1830 4614 7.545615 ACAAAACTAATAAGCTAGCATTTTGGC 59.454 33.333 18.83 0.00 39.14 4.52
1831 4615 6.773976 AACTAATAAGCTAGCATTTTGGCA 57.226 33.333 18.83 0.00 35.83 4.92
1832 4616 6.136541 ACTAATAAGCTAGCATTTTGGCAC 57.863 37.500 18.83 0.00 35.83 5.01
1833 4617 3.698029 ATAAGCTAGCATTTTGGCACG 57.302 42.857 18.83 0.00 35.83 5.34
1835 4619 1.139520 GCTAGCATTTTGGCACGGG 59.860 57.895 10.63 0.00 35.83 5.28
1836 4620 1.595093 GCTAGCATTTTGGCACGGGT 61.595 55.000 10.63 0.00 35.83 5.28
1838 4622 2.297701 CTAGCATTTTGGCACGGGTAT 58.702 47.619 0.00 0.00 35.83 2.73
1840 4624 2.944129 AGCATTTTGGCACGGGTATAT 58.056 42.857 0.00 0.00 35.83 0.86
1841 4625 4.093472 AGCATTTTGGCACGGGTATATA 57.907 40.909 0.00 0.00 35.83 0.86
1842 4626 4.662278 AGCATTTTGGCACGGGTATATAT 58.338 39.130 0.00 0.00 35.83 0.86
1843 4627 5.811190 AGCATTTTGGCACGGGTATATATA 58.189 37.500 0.00 0.00 35.83 0.86
1845 4629 6.889722 AGCATTTTGGCACGGGTATATATAAT 59.110 34.615 0.00 0.00 35.83 1.28
1846 4630 7.396055 AGCATTTTGGCACGGGTATATATAATT 59.604 33.333 0.00 0.00 35.83 1.40
1848 4632 8.735315 CATTTTGGCACGGGTATATATAATTGA 58.265 33.333 0.00 0.00 0.00 2.57
1884 5018 7.081526 ACAATCAGCTTGTCTTTGATATCAC 57.918 36.000 4.48 0.00 44.99 3.06
1885 5019 5.980698 ATCAGCTTGTCTTTGATATCACG 57.019 39.130 4.48 0.00 30.18 4.35
1886 5020 5.072040 TCAGCTTGTCTTTGATATCACGA 57.928 39.130 4.48 2.31 0.00 4.35
1887 5021 5.664457 TCAGCTTGTCTTTGATATCACGAT 58.336 37.500 4.48 0.00 0.00 3.73
1888 5022 5.521372 TCAGCTTGTCTTTGATATCACGATG 59.479 40.000 4.48 1.01 0.00 3.84
1889 5023 5.521372 CAGCTTGTCTTTGATATCACGATGA 59.479 40.000 4.48 0.00 0.00 2.92
1890 5024 6.036408 CAGCTTGTCTTTGATATCACGATGAA 59.964 38.462 4.48 0.00 0.00 2.57
1891 5025 6.595326 AGCTTGTCTTTGATATCACGATGAAA 59.405 34.615 4.48 0.00 0.00 2.69
1892 5026 7.119699 AGCTTGTCTTTGATATCACGATGAAAA 59.880 33.333 4.48 0.99 0.00 2.29
1893 5027 7.750458 GCTTGTCTTTGATATCACGATGAAAAA 59.250 33.333 4.48 0.00 0.00 1.94
1894 5028 9.778993 CTTGTCTTTGATATCACGATGAAAAAT 57.221 29.630 4.48 0.00 0.00 1.82
1897 5031 9.651718 GTCTTTGATATCACGATGAAAAATACC 57.348 33.333 4.48 0.00 0.00 2.73
1898 5032 9.389755 TCTTTGATATCACGATGAAAAATACCA 57.610 29.630 4.48 0.00 0.00 3.25
1900 5034 9.781834 TTTGATATCACGATGAAAAATACCAAC 57.218 29.630 4.48 0.00 0.00 3.77
1901 5035 7.925993 TGATATCACGATGAAAAATACCAACC 58.074 34.615 0.00 0.00 0.00 3.77
1902 5036 7.554476 TGATATCACGATGAAAAATACCAACCA 59.446 33.333 0.00 0.00 0.00 3.67
1903 5037 6.582677 ATCACGATGAAAAATACCAACCAA 57.417 33.333 0.00 0.00 0.00 3.67
1904 5038 6.007936 TCACGATGAAAAATACCAACCAAG 57.992 37.500 0.00 0.00 0.00 3.61
1905 5039 4.621034 CACGATGAAAAATACCAACCAAGC 59.379 41.667 0.00 0.00 0.00 4.01
1906 5040 4.173256 CGATGAAAAATACCAACCAAGCC 58.827 43.478 0.00 0.00 0.00 4.35
1907 5041 4.321601 CGATGAAAAATACCAACCAAGCCA 60.322 41.667 0.00 0.00 0.00 4.75
1908 5042 5.624281 CGATGAAAAATACCAACCAAGCCAT 60.624 40.000 0.00 0.00 0.00 4.40
1909 5043 4.892433 TGAAAAATACCAACCAAGCCATG 58.108 39.130 0.00 0.00 0.00 3.66
1910 5044 3.333029 AAAATACCAACCAAGCCATGC 57.667 42.857 0.00 0.00 0.00 4.06
1911 5045 1.935799 AATACCAACCAAGCCATGCA 58.064 45.000 0.00 0.00 0.00 3.96
1912 5046 1.935799 ATACCAACCAAGCCATGCAA 58.064 45.000 0.00 0.00 0.00 4.08
1913 5047 1.255882 TACCAACCAAGCCATGCAAG 58.744 50.000 0.00 0.00 0.00 4.01
1914 5048 0.469705 ACCAACCAAGCCATGCAAGA 60.470 50.000 0.00 0.00 0.00 3.02
1915 5049 0.245539 CCAACCAAGCCATGCAAGAG 59.754 55.000 0.00 0.00 0.00 2.85
1916 5050 0.245539 CAACCAAGCCATGCAAGAGG 59.754 55.000 0.00 0.00 0.00 3.69
1917 5051 0.178953 AACCAAGCCATGCAAGAGGT 60.179 50.000 0.00 0.00 0.00 3.85
1918 5052 0.896940 ACCAAGCCATGCAAGAGGTG 60.897 55.000 0.00 0.00 0.00 4.00
1919 5053 0.609957 CCAAGCCATGCAAGAGGTGA 60.610 55.000 0.00 0.00 0.00 4.02
1920 5054 0.809385 CAAGCCATGCAAGAGGTGAG 59.191 55.000 0.00 0.00 0.00 3.51
1921 5055 0.323178 AAGCCATGCAAGAGGTGAGG 60.323 55.000 0.00 0.00 0.00 3.86
1922 5056 1.751927 GCCATGCAAGAGGTGAGGG 60.752 63.158 0.00 0.00 0.00 4.30
1923 5057 1.687612 CCATGCAAGAGGTGAGGGT 59.312 57.895 0.00 0.00 0.00 4.34
1924 5058 0.393537 CCATGCAAGAGGTGAGGGTC 60.394 60.000 0.00 0.00 0.00 4.46
1925 5059 0.325933 CATGCAAGAGGTGAGGGTCA 59.674 55.000 0.00 0.00 0.00 4.02
1926 5060 1.067295 ATGCAAGAGGTGAGGGTCAA 58.933 50.000 0.00 0.00 0.00 3.18
1927 5061 0.843309 TGCAAGAGGTGAGGGTCAAA 59.157 50.000 0.00 0.00 0.00 2.69
1928 5062 1.214175 TGCAAGAGGTGAGGGTCAAAA 59.786 47.619 0.00 0.00 0.00 2.44
1929 5063 1.882623 GCAAGAGGTGAGGGTCAAAAG 59.117 52.381 0.00 0.00 0.00 2.27
1930 5064 2.487265 GCAAGAGGTGAGGGTCAAAAGA 60.487 50.000 0.00 0.00 0.00 2.52
1931 5065 3.820557 CAAGAGGTGAGGGTCAAAAGAA 58.179 45.455 0.00 0.00 0.00 2.52
1932 5066 3.778954 AGAGGTGAGGGTCAAAAGAAG 57.221 47.619 0.00 0.00 0.00 2.85
1933 5067 2.155279 GAGGTGAGGGTCAAAAGAAGC 58.845 52.381 0.00 0.00 0.00 3.86
1934 5068 1.494721 AGGTGAGGGTCAAAAGAAGCA 59.505 47.619 0.00 0.00 0.00 3.91
1935 5069 2.108952 AGGTGAGGGTCAAAAGAAGCAT 59.891 45.455 0.00 0.00 0.00 3.79
1936 5070 2.229784 GGTGAGGGTCAAAAGAAGCATG 59.770 50.000 0.00 0.00 0.00 4.06
1937 5071 1.888512 TGAGGGTCAAAAGAAGCATGC 59.111 47.619 10.51 10.51 0.00 4.06
1938 5072 1.888512 GAGGGTCAAAAGAAGCATGCA 59.111 47.619 21.98 0.00 0.00 3.96
1939 5073 2.297033 GAGGGTCAAAAGAAGCATGCAA 59.703 45.455 21.98 0.00 0.00 4.08
1940 5074 2.298163 AGGGTCAAAAGAAGCATGCAAG 59.702 45.455 21.98 1.15 0.00 4.01
1941 5075 2.036346 GGGTCAAAAGAAGCATGCAAGT 59.964 45.455 21.98 4.09 0.00 3.16
1942 5076 3.255642 GGGTCAAAAGAAGCATGCAAGTA 59.744 43.478 21.98 0.00 0.00 2.24
1943 5077 4.229876 GGTCAAAAGAAGCATGCAAGTAC 58.770 43.478 21.98 6.01 0.00 2.73
1944 5078 4.022849 GGTCAAAAGAAGCATGCAAGTACT 60.023 41.667 21.98 8.26 0.00 2.73
1945 5079 4.913924 GTCAAAAGAAGCATGCAAGTACTG 59.086 41.667 21.98 10.21 0.00 2.74
1946 5080 4.821260 TCAAAAGAAGCATGCAAGTACTGA 59.179 37.500 21.98 12.40 0.00 3.41
1947 5081 5.474532 TCAAAAGAAGCATGCAAGTACTGAT 59.525 36.000 21.98 0.00 0.00 2.90
1948 5082 5.972107 AAAGAAGCATGCAAGTACTGATT 57.028 34.783 21.98 1.00 0.00 2.57
1949 5083 7.174772 TCAAAAGAAGCATGCAAGTACTGATTA 59.825 33.333 21.98 0.00 0.00 1.75
1950 5084 7.636150 AAAGAAGCATGCAAGTACTGATTAT 57.364 32.000 21.98 0.00 0.00 1.28
1951 5085 8.737168 AAAGAAGCATGCAAGTACTGATTATA 57.263 30.769 21.98 0.00 0.00 0.98
1952 5086 7.959689 AGAAGCATGCAAGTACTGATTATAG 57.040 36.000 21.98 0.00 0.00 1.31
1953 5087 6.933521 AGAAGCATGCAAGTACTGATTATAGG 59.066 38.462 21.98 0.00 0.00 2.57
1954 5088 5.555017 AGCATGCAAGTACTGATTATAGGG 58.445 41.667 21.98 0.00 0.00 3.53
1955 5089 4.697352 GCATGCAAGTACTGATTATAGGGG 59.303 45.833 14.21 0.00 0.00 4.79
1956 5090 5.513094 GCATGCAAGTACTGATTATAGGGGA 60.513 44.000 14.21 0.00 0.00 4.81
1957 5091 6.533730 CATGCAAGTACTGATTATAGGGGAA 58.466 40.000 0.00 0.00 0.00 3.97
1958 5092 6.763715 TGCAAGTACTGATTATAGGGGAAT 57.236 37.500 0.00 0.00 0.00 3.01
1959 5093 6.533730 TGCAAGTACTGATTATAGGGGAATG 58.466 40.000 0.00 0.00 0.00 2.67
1960 5094 6.101150 TGCAAGTACTGATTATAGGGGAATGT 59.899 38.462 0.00 0.00 0.00 2.71
1961 5095 7.291416 TGCAAGTACTGATTATAGGGGAATGTA 59.709 37.037 0.00 0.00 0.00 2.29
1962 5096 7.603024 GCAAGTACTGATTATAGGGGAATGTAC 59.397 40.741 0.00 0.00 0.00 2.90
1963 5097 8.871125 CAAGTACTGATTATAGGGGAATGTACT 58.129 37.037 0.00 0.00 39.44 2.73
1965 5099 9.531158 AGTACTGATTATAGGGGAATGTACTAC 57.469 37.037 0.00 0.00 37.08 2.73
1966 5100 9.305555 GTACTGATTATAGGGGAATGTACTACA 57.694 37.037 0.00 0.00 0.00 2.74
1967 5101 8.191534 ACTGATTATAGGGGAATGTACTACAC 57.808 38.462 0.00 0.00 0.00 2.90
1968 5102 7.787904 ACTGATTATAGGGGAATGTACTACACA 59.212 37.037 0.00 0.00 42.69 3.72
1969 5103 8.555896 TGATTATAGGGGAATGTACTACACAA 57.444 34.615 0.00 0.00 41.55 3.33
1970 5104 8.994500 TGATTATAGGGGAATGTACTACACAAA 58.006 33.333 0.00 0.00 41.55 2.83
1971 5105 9.841295 GATTATAGGGGAATGTACTACACAAAA 57.159 33.333 0.00 0.00 41.55 2.44
1994 5128 8.479313 AAAAACTAATAAGCTAGCATTTTGGC 57.521 30.769 18.83 0.00 0.00 4.52
1995 5129 6.773976 AACTAATAAGCTAGCATTTTGGCA 57.226 33.333 18.83 0.00 35.83 4.92
1996 5130 6.136541 ACTAATAAGCTAGCATTTTGGCAC 57.863 37.500 18.83 0.00 35.83 5.01
1997 5131 3.698029 ATAAGCTAGCATTTTGGCACG 57.302 42.857 18.83 0.00 35.83 5.34
1998 5132 0.527565 AAGCTAGCATTTTGGCACGG 59.472 50.000 18.83 0.00 35.83 4.94
1999 5133 1.139520 GCTAGCATTTTGGCACGGG 59.860 57.895 10.63 0.00 35.83 5.28
2000 5134 1.139520 CTAGCATTTTGGCACGGGC 59.860 57.895 0.00 0.00 40.13 6.13
2001 5135 1.594194 CTAGCATTTTGGCACGGGCA 61.594 55.000 13.89 3.61 43.71 5.36
2002 5136 0.969917 TAGCATTTTGGCACGGGCAT 60.970 50.000 13.89 0.00 43.71 4.40
2003 5137 0.969917 AGCATTTTGGCACGGGCATA 60.970 50.000 13.89 0.00 43.71 3.14
2004 5138 0.104671 GCATTTTGGCACGGGCATAT 59.895 50.000 13.89 0.00 43.71 1.78
2005 5139 1.339610 GCATTTTGGCACGGGCATATA 59.660 47.619 13.89 0.00 43.71 0.86
2006 5140 2.029110 GCATTTTGGCACGGGCATATAT 60.029 45.455 13.89 0.00 43.71 0.86
2007 5141 3.192422 GCATTTTGGCACGGGCATATATA 59.808 43.478 13.89 0.00 43.71 0.86
2008 5142 4.321601 GCATTTTGGCACGGGCATATATAA 60.322 41.667 13.89 0.00 43.71 0.98
2009 5143 5.624281 GCATTTTGGCACGGGCATATATAAT 60.624 40.000 13.89 0.00 43.71 1.28
2010 5144 6.397272 CATTTTGGCACGGGCATATATAATT 58.603 36.000 13.89 0.00 43.71 1.40
2011 5145 5.384063 TTTGGCACGGGCATATATAATTG 57.616 39.130 13.89 0.00 43.71 2.32
2012 5146 4.293662 TGGCACGGGCATATATAATTGA 57.706 40.909 13.89 0.00 43.71 2.57
2013 5147 4.657013 TGGCACGGGCATATATAATTGAA 58.343 39.130 13.89 0.00 43.71 2.69
2014 5148 5.073428 TGGCACGGGCATATATAATTGAAA 58.927 37.500 13.89 0.00 43.71 2.69
2015 5149 5.714333 TGGCACGGGCATATATAATTGAAAT 59.286 36.000 13.89 0.00 43.71 2.17
2046 5180 5.557891 ACAATCAGCTTGTCTTTGCTATC 57.442 39.130 0.00 0.00 44.99 2.08
2048 5182 5.106396 ACAATCAGCTTGTCTTTGCTATCAC 60.106 40.000 0.00 0.00 44.99 3.06
2055 5189 3.644823 TGTCTTTGCTATCACGACGAAA 58.355 40.909 0.00 0.00 0.00 3.46
2060 5194 3.781341 TGCTATCACGACGAAAAACAC 57.219 42.857 0.00 0.00 0.00 3.32
2068 5202 2.159490 ACGACGAAAAACACCAACCAAG 60.159 45.455 0.00 0.00 0.00 3.61
2069 5203 2.190161 GACGAAAAACACCAACCAAGC 58.810 47.619 0.00 0.00 0.00 4.01
2073 5207 2.618442 AAAACACCAACCAAGCCATG 57.382 45.000 0.00 0.00 0.00 3.66
2084 5218 0.809385 CAAGCCATGCAAGAGGTGAG 59.191 55.000 0.00 0.00 0.00 3.51
2085 5219 0.323178 AAGCCATGCAAGAGGTGAGG 60.323 55.000 0.00 0.00 0.00 3.86
2089 5223 0.325933 CATGCAAGAGGTGAGGGTCA 59.674 55.000 0.00 0.00 0.00 4.02
2107 5241 4.261994 GGGTCAAAAGAAGCATGCAAGTAA 60.262 41.667 21.98 0.00 0.00 2.24
2125 5260 6.485648 GCAAGTAACGATTATAGGGGAATGTT 59.514 38.462 0.00 0.00 0.00 2.71
2151 5286 6.267500 ACACAACAACAACAAAATATTCGC 57.733 33.333 0.00 0.00 0.00 4.70
2152 5287 5.807520 ACACAACAACAACAAAATATTCGCA 59.192 32.000 0.00 0.00 0.00 5.10
2168 5303 3.027170 GCACACGATCGCACCAAGG 62.027 63.158 16.60 0.00 0.00 3.61
2172 5307 0.948623 CACGATCGCACCAAGGAACA 60.949 55.000 16.60 0.00 0.00 3.18
2178 5313 1.086696 CGCACCAAGGAACACTATGG 58.913 55.000 0.00 0.00 38.91 2.74
2192 5327 3.192844 ACACTATGGAGGTACAAGTGACG 59.807 47.826 7.70 0.00 39.93 4.35
2200 5335 4.098960 GGAGGTACAAGTGACGATTATCCA 59.901 45.833 0.00 0.00 0.00 3.41
2206 5341 4.454504 ACAAGTGACGATTATCCAACCAAC 59.545 41.667 0.00 0.00 0.00 3.77
2210 5345 4.025979 GTGACGATTATCCAACCAACGATC 60.026 45.833 0.00 0.00 0.00 3.69
2277 5412 2.762535 TTCCTGCAGCTAGGTTGTAC 57.237 50.000 8.66 0.00 38.99 2.90
2292 5427 0.253044 TGTACCTCCAAGCCATGAGC 59.747 55.000 0.00 0.00 44.25 4.26
2304 5439 3.598019 GCCATGAGCATTTCTTTGGAA 57.402 42.857 0.00 0.00 42.97 3.53
2310 5445 3.440173 TGAGCATTTCTTTGGAACGATCC 59.560 43.478 4.46 4.46 46.76 3.36
2320 5455 2.418983 GGAACGATCCACCGATCTAC 57.581 55.000 6.88 0.00 45.79 2.59
2343 5478 3.025262 GTCGGAGAAGAATACACCTCCT 58.975 50.000 0.00 0.00 42.20 3.69
2346 5481 4.079901 TCGGAGAAGAATACACCTCCTAGT 60.080 45.833 0.00 0.00 42.20 2.57
2355 5490 6.551601 AGAATACACCTCCTAGTTATCCACAG 59.448 42.308 0.00 0.00 0.00 3.66
2358 5493 6.027025 ACACCTCCTAGTTATCCACAGATA 57.973 41.667 0.00 0.00 33.67 1.98
2360 5495 5.244178 CACCTCCTAGTTATCCACAGATACC 59.756 48.000 0.00 0.00 34.63 2.73
2367 5502 7.281324 CCTAGTTATCCACAGATACCGATCTAG 59.719 44.444 0.00 0.00 40.68 2.43
2374 5509 5.306394 CACAGATACCGATCTAGAGGTACA 58.694 45.833 11.95 0.00 44.74 2.90
2375 5510 5.763698 CACAGATACCGATCTAGAGGTACAA 59.236 44.000 11.95 0.00 44.74 2.41
2376 5511 5.764192 ACAGATACCGATCTAGAGGTACAAC 59.236 44.000 11.95 7.86 44.74 3.32
2383 5518 4.575236 CGATCTAGAGGTACAACAGCACTA 59.425 45.833 0.00 0.00 0.00 2.74
2384 5519 5.504337 CGATCTAGAGGTACAACAGCACTAC 60.504 48.000 0.00 0.00 0.00 2.73
2385 5520 3.688185 TCTAGAGGTACAACAGCACTACG 59.312 47.826 0.00 0.00 0.00 3.51
2386 5521 1.067776 AGAGGTACAACAGCACTACGC 60.068 52.381 0.00 0.00 42.91 4.42
2396 5531 1.517257 GCACTACGCGACTCTGCAT 60.517 57.895 15.93 0.00 34.15 3.96
2403 5538 1.284657 CGCGACTCTGCATGAAGAAT 58.715 50.000 4.55 0.00 34.15 2.40
2407 5542 4.025396 CGCGACTCTGCATGAAGAATAATT 60.025 41.667 4.55 0.00 34.15 1.40
2408 5543 5.175673 CGCGACTCTGCATGAAGAATAATTA 59.824 40.000 4.55 0.00 34.15 1.40
2409 5544 6.588552 GCGACTCTGCATGAAGAATAATTAG 58.411 40.000 4.55 0.00 34.15 1.73
2426 5561 9.990360 GAATAATTAGAAGAACTAGAAGGAGGG 57.010 37.037 0.00 0.00 32.30 4.30
2427 5562 6.816616 AATTAGAAGAACTAGAAGGAGGGG 57.183 41.667 0.00 0.00 32.30 4.79
2428 5563 5.547631 TTAGAAGAACTAGAAGGAGGGGA 57.452 43.478 0.00 0.00 32.30 4.81
2429 5564 3.989056 AGAAGAACTAGAAGGAGGGGAG 58.011 50.000 0.00 0.00 0.00 4.30
2430 5565 2.168458 AGAACTAGAAGGAGGGGAGC 57.832 55.000 0.00 0.00 0.00 4.70
2431 5566 1.362932 AGAACTAGAAGGAGGGGAGCA 59.637 52.381 0.00 0.00 0.00 4.26
2432 5567 1.760029 GAACTAGAAGGAGGGGAGCAG 59.240 57.143 0.00 0.00 0.00 4.24
2433 5568 0.689412 ACTAGAAGGAGGGGAGCAGC 60.689 60.000 0.00 0.00 0.00 5.25
2434 5569 1.383248 TAGAAGGAGGGGAGCAGCC 60.383 63.158 0.00 0.00 0.00 4.85
2435 5570 1.891296 TAGAAGGAGGGGAGCAGCCT 61.891 60.000 0.00 0.00 36.66 4.58
2436 5571 1.383248 GAAGGAGGGGAGCAGCCTA 60.383 63.158 0.00 0.00 36.66 3.93
2437 5572 1.383803 AAGGAGGGGAGCAGCCTAG 60.384 63.158 0.00 0.00 36.66 3.02
2438 5573 2.041405 GGAGGGGAGCAGCCTAGT 60.041 66.667 0.00 0.00 36.66 2.57
2439 5574 1.233369 GGAGGGGAGCAGCCTAGTA 59.767 63.158 0.00 0.00 36.66 1.82
2440 5575 0.830023 GGAGGGGAGCAGCCTAGTAG 60.830 65.000 0.00 0.00 36.66 2.57
2441 5576 1.458588 AGGGGAGCAGCCTAGTAGC 60.459 63.158 0.00 0.00 36.66 3.58
2442 5577 1.762460 GGGGAGCAGCCTAGTAGCA 60.762 63.158 0.00 0.00 36.66 3.49
2443 5578 1.124477 GGGGAGCAGCCTAGTAGCAT 61.124 60.000 0.00 0.00 36.66 3.79
2444 5579 1.633774 GGGAGCAGCCTAGTAGCATA 58.366 55.000 0.00 0.00 36.66 3.14
2445 5580 1.273886 GGGAGCAGCCTAGTAGCATAC 59.726 57.143 0.00 0.00 38.27 2.39
2446 5581 1.273886 GGAGCAGCCTAGTAGCATACC 59.726 57.143 0.00 0.00 44.47 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 3.001228 GCATCATTCAAAGCGACGTCATA 59.999 43.478 17.16 0.00 0.00 2.15
100 101 3.495331 TGAACTCCAGCCTATTTTTGCA 58.505 40.909 0.00 0.00 0.00 4.08
159 160 1.135333 GGGCTTAGGACGAGAACTCAG 59.865 57.143 0.00 0.00 0.00 3.35
173 517 3.637229 CTCTTTCGGAGTATCAGGGCTTA 59.363 47.826 0.00 0.00 37.30 3.09
176 520 2.032620 TCTCTTTCGGAGTATCAGGGC 58.967 52.381 0.00 0.00 42.40 5.19
230 574 0.966370 AGTAGAGAGGGTCACGGCAC 60.966 60.000 0.00 0.00 0.00 5.01
231 575 0.680280 GAGTAGAGAGGGTCACGGCA 60.680 60.000 0.00 0.00 0.00 5.69
273 617 5.769662 GGAACTTGGCATGGTATCATCATTA 59.230 40.000 5.31 0.00 0.00 1.90
352 696 7.372451 TCAGTCATTTACCGATTTGTTTAGG 57.628 36.000 0.00 0.00 0.00 2.69
433 777 5.512788 CAGCCTATTTTTGCGTTCAGTATTG 59.487 40.000 0.00 0.00 0.00 1.90
434 778 5.393027 CCAGCCTATTTTTGCGTTCAGTATT 60.393 40.000 0.00 0.00 0.00 1.89
522 1943 1.336755 ACACGGGCACTTCAATGTTTC 59.663 47.619 0.00 0.00 0.00 2.78
639 2061 1.270971 CCGCATAGCATGTGCAAAAC 58.729 50.000 7.83 0.00 45.16 2.43
801 2223 3.001228 GCATCATTCAAAGCGACGTCATA 59.999 43.478 17.16 0.00 0.00 2.15
829 2251 3.681593 ACTCCAGCCTATTTTTGCGTTA 58.318 40.909 0.00 0.00 0.00 3.18
888 2653 3.128242 GGTTTCGGACGAGAACTCATCTA 59.872 47.826 14.48 0.00 38.96 1.98
959 2726 3.292460 CCCGTGTCTATTTCTCCTCTCT 58.708 50.000 0.00 0.00 0.00 3.10
971 2738 1.939934 CGGTAATACGACCCGTGTCTA 59.060 52.381 1.93 0.00 41.39 2.59
1030 2797 4.751060 AGCGAATCGGTGTAGACAAAATA 58.249 39.130 6.54 0.00 35.85 1.40
1070 2837 0.320858 TTTGTAGTCATCGCGGCCAA 60.321 50.000 6.13 0.00 0.00 4.52
1320 3445 4.889409 ACAAAAGGAGATGTTGCTTTGAGA 59.111 37.500 0.00 0.00 45.42 3.27
1341 3466 7.488322 CCTTCTCCAACATTTCAACTAAAACA 58.512 34.615 0.00 0.00 0.00 2.83
1355 3480 0.895530 CCTACTCGCCTTCTCCAACA 59.104 55.000 0.00 0.00 0.00 3.33
1356 3481 0.460459 GCCTACTCGCCTTCTCCAAC 60.460 60.000 0.00 0.00 0.00 3.77
1357 3482 0.614979 AGCCTACTCGCCTTCTCCAA 60.615 55.000 0.00 0.00 0.00 3.53
1358 3483 1.000486 AGCCTACTCGCCTTCTCCA 60.000 57.895 0.00 0.00 0.00 3.86
1359 3484 1.737201 GAGCCTACTCGCCTTCTCC 59.263 63.158 0.00 0.00 32.04 3.71
1455 3595 1.877367 CCGATCGAGCCTAGCTACC 59.123 63.158 18.66 0.00 39.88 3.18
1456 3596 1.210672 GCCGATCGAGCCTAGCTAC 59.789 63.158 18.66 0.00 39.88 3.58
1457 3597 0.822121 TTGCCGATCGAGCCTAGCTA 60.822 55.000 18.66 4.18 39.88 3.32
1458 3598 1.467678 ATTGCCGATCGAGCCTAGCT 61.468 55.000 18.66 0.00 43.88 3.32
1459 3599 1.005630 ATTGCCGATCGAGCCTAGC 60.006 57.895 18.66 10.84 0.00 3.42
1516 3656 6.904498 AGTACTCGCTATATCAAGTTGCTAG 58.096 40.000 0.00 0.85 0.00 3.42
1543 3683 6.542574 TCGTTAGAGAAGTACTGCTATAGC 57.457 41.667 18.18 18.18 42.50 2.97
1635 3781 5.006649 GCAAACCAACATCTTTGAGAAAACC 59.993 40.000 0.00 0.00 30.20 3.27
1657 3803 1.253593 TATGCCCGTGCCAAAATGCA 61.254 50.000 0.00 0.00 39.37 3.96
1692 3838 9.394767 TGATAGCAAAGATAAGCTTATTGTTCA 57.605 29.630 19.77 14.81 42.05 3.18
1694 3840 8.338259 CGTGATAGCAAAGATAAGCTTATTGTT 58.662 33.333 19.77 14.73 42.05 2.83
1695 3841 7.710907 TCGTGATAGCAAAGATAAGCTTATTGT 59.289 33.333 19.77 8.26 42.05 2.71
1697 3843 7.710907 TGTCGTGATAGCAAAGATAAGCTTATT 59.289 33.333 19.77 3.46 42.05 1.40
1698 3844 7.210174 TGTCGTGATAGCAAAGATAAGCTTAT 58.790 34.615 18.92 18.92 42.05 1.73
1699 3845 6.569780 TGTCGTGATAGCAAAGATAAGCTTA 58.430 36.000 8.99 8.99 42.05 3.09
1700 3846 5.419542 TGTCGTGATAGCAAAGATAAGCTT 58.580 37.500 3.48 3.48 42.05 3.74
1702 3848 5.718649 TTGTCGTGATAGCAAAGATAAGC 57.281 39.130 0.00 0.00 0.00 3.09
1724 3870 3.133721 TGCATAGCTTGGTTGGTGTTTTT 59.866 39.130 0.00 0.00 0.00 1.94
1726 3872 2.315176 TGCATAGCTTGGTTGGTGTTT 58.685 42.857 0.00 0.00 0.00 2.83
1728 3874 1.888512 CTTGCATAGCTTGGTTGGTGT 59.111 47.619 0.00 0.00 0.00 4.16
1729 3875 2.161855 TCTTGCATAGCTTGGTTGGTG 58.838 47.619 0.00 0.00 0.00 4.17
1730 3876 2.040278 TCTCTTGCATAGCTTGGTTGGT 59.960 45.455 0.00 0.00 0.00 3.67
1731 3877 2.715046 TCTCTTGCATAGCTTGGTTGG 58.285 47.619 0.00 0.00 0.00 3.77
1732 3878 3.943381 TCATCTCTTGCATAGCTTGGTTG 59.057 43.478 0.00 0.00 0.00 3.77
1733 3879 4.197750 CTCATCTCTTGCATAGCTTGGTT 58.802 43.478 0.00 0.00 0.00 3.67
1734 3880 3.806380 CTCATCTCTTGCATAGCTTGGT 58.194 45.455 0.00 0.00 0.00 3.67
1735 3881 2.548904 GCTCATCTCTTGCATAGCTTGG 59.451 50.000 0.00 0.00 0.00 3.61
1736 3882 2.221286 CGCTCATCTCTTGCATAGCTTG 59.779 50.000 0.00 0.00 0.00 4.01
1737 3883 2.158986 ACGCTCATCTCTTGCATAGCTT 60.159 45.455 0.00 0.00 0.00 3.74
1739 3885 1.791785 GACGCTCATCTCTTGCATAGC 59.208 52.381 0.00 0.00 0.00 2.97
1741 3887 3.525268 TTGACGCTCATCTCTTGCATA 57.475 42.857 0.00 0.00 0.00 3.14
1742 3888 2.391616 TTGACGCTCATCTCTTGCAT 57.608 45.000 0.00 0.00 0.00 3.96
1743 3889 2.168326 TTTGACGCTCATCTCTTGCA 57.832 45.000 0.00 0.00 0.00 4.08
1744 3890 2.738846 TCTTTTGACGCTCATCTCTTGC 59.261 45.455 0.00 0.00 0.00 4.01
1745 3891 4.668686 GCTTCTTTTGACGCTCATCTCTTG 60.669 45.833 0.00 0.00 40.13 3.02
1746 3892 3.434984 GCTTCTTTTGACGCTCATCTCTT 59.565 43.478 0.00 0.00 40.13 2.85
1747 3893 2.999355 GCTTCTTTTGACGCTCATCTCT 59.001 45.455 0.00 0.00 40.13 3.10
1748 3894 2.738846 TGCTTCTTTTGACGCTCATCTC 59.261 45.455 0.00 0.00 43.19 2.75
1749 3895 2.771089 TGCTTCTTTTGACGCTCATCT 58.229 42.857 0.00 0.00 43.19 2.90
1750 3896 3.486584 CTTGCTTCTTTTGACGCTCATC 58.513 45.455 0.00 0.00 43.19 2.92
1751 3897 2.351157 GCTTGCTTCTTTTGACGCTCAT 60.351 45.455 0.00 0.00 43.19 2.90
1752 3898 1.002468 GCTTGCTTCTTTTGACGCTCA 60.002 47.619 0.00 0.00 43.19 4.26
1753 3899 1.002468 TGCTTGCTTCTTTTGACGCTC 60.002 47.619 0.00 0.00 43.19 5.03
1755 3901 1.783140 CTTGCTTGCTTCTTTTGACGC 59.217 47.619 0.00 0.00 43.10 5.19
1756 3902 3.070429 ACTTGCTTGCTTCTTTTGACG 57.930 42.857 0.00 0.00 0.00 4.35
1757 3903 4.290969 GGTACTTGCTTGCTTCTTTTGAC 58.709 43.478 0.00 0.00 0.00 3.18
1758 3904 3.003275 CGGTACTTGCTTGCTTCTTTTGA 59.997 43.478 0.00 0.00 0.00 2.69
1759 3905 3.003275 TCGGTACTTGCTTGCTTCTTTTG 59.997 43.478 0.00 0.00 0.00 2.44
1760 3906 3.211045 TCGGTACTTGCTTGCTTCTTTT 58.789 40.909 0.00 0.00 0.00 2.27
1761 3907 2.846193 TCGGTACTTGCTTGCTTCTTT 58.154 42.857 0.00 0.00 0.00 2.52
1762 3908 2.543777 TCGGTACTTGCTTGCTTCTT 57.456 45.000 0.00 0.00 0.00 2.52
1763 3909 2.770164 ATCGGTACTTGCTTGCTTCT 57.230 45.000 0.00 0.00 0.00 2.85
1764 3910 5.177696 CCTATAATCGGTACTTGCTTGCTTC 59.822 44.000 0.00 0.00 0.00 3.86
1765 3911 5.057149 CCTATAATCGGTACTTGCTTGCTT 58.943 41.667 0.00 0.00 0.00 3.91
1766 3912 4.503296 CCCTATAATCGGTACTTGCTTGCT 60.503 45.833 0.00 0.00 0.00 3.91
1768 3914 4.039973 TCCCCTATAATCGGTACTTGCTTG 59.960 45.833 0.00 0.00 0.00 4.01
1769 3915 4.228824 TCCCCTATAATCGGTACTTGCTT 58.771 43.478 0.00 0.00 0.00 3.91
1771 3917 4.612264 TTCCCCTATAATCGGTACTTGC 57.388 45.455 0.00 0.00 0.00 4.01
1772 3918 6.110411 ACATTCCCCTATAATCGGTACTTG 57.890 41.667 0.00 0.00 0.00 3.16
1773 3919 7.015064 AGTACATTCCCCTATAATCGGTACTT 58.985 38.462 0.00 0.00 0.00 2.24
1775 3921 6.847421 AGTACATTCCCCTATAATCGGTAC 57.153 41.667 0.00 0.00 0.00 3.34
1776 3922 8.806146 GTTTAGTACATTCCCCTATAATCGGTA 58.194 37.037 0.00 0.00 0.00 4.02
1777 3923 7.290714 TGTTTAGTACATTCCCCTATAATCGGT 59.709 37.037 0.00 0.00 0.00 4.69
1779 3925 8.985805 GTTGTTTAGTACATTCCCCTATAATCG 58.014 37.037 0.00 0.00 36.44 3.34
1780 3926 9.841295 TGTTGTTTAGTACATTCCCCTATAATC 57.159 33.333 0.00 0.00 36.44 1.75
1784 3930 8.799367 GTTTTGTTGTTTAGTACATTCCCCTAT 58.201 33.333 0.00 0.00 36.44 2.57
1785 3931 8.000127 AGTTTTGTTGTTTAGTACATTCCCCTA 59.000 33.333 0.00 0.00 36.44 3.53
1786 3932 6.837048 AGTTTTGTTGTTTAGTACATTCCCCT 59.163 34.615 0.00 0.00 36.44 4.79
1787 3933 7.046292 AGTTTTGTTGTTTAGTACATTCCCC 57.954 36.000 0.00 0.00 36.44 4.81
1799 4583 9.981114 AATGCTAGCTTATTAGTTTTGTTGTTT 57.019 25.926 17.23 0.00 0.00 2.83
1800 4584 9.981114 AAATGCTAGCTTATTAGTTTTGTTGTT 57.019 25.926 17.23 0.00 0.00 2.83
1801 4585 9.981114 AAAATGCTAGCTTATTAGTTTTGTTGT 57.019 25.926 17.23 0.00 0.00 3.32
1805 4589 7.545265 TGCCAAAATGCTAGCTTATTAGTTTTG 59.455 33.333 17.23 17.50 35.94 2.44
1808 4592 6.564328 GTGCCAAAATGCTAGCTTATTAGTT 58.436 36.000 17.23 0.00 0.00 2.24
1811 4595 4.036262 CCGTGCCAAAATGCTAGCTTATTA 59.964 41.667 17.23 0.00 0.00 0.98
1812 4596 3.181487 CCGTGCCAAAATGCTAGCTTATT 60.181 43.478 17.23 5.32 0.00 1.40
1813 4597 2.358898 CCGTGCCAAAATGCTAGCTTAT 59.641 45.455 17.23 0.00 0.00 1.73
1814 4598 1.742831 CCGTGCCAAAATGCTAGCTTA 59.257 47.619 17.23 0.00 0.00 3.09
1815 4599 0.527565 CCGTGCCAAAATGCTAGCTT 59.472 50.000 17.23 6.81 0.00 3.74
1817 4601 1.139520 CCCGTGCCAAAATGCTAGC 59.860 57.895 8.10 8.10 0.00 3.42
1824 4608 8.871629 ATCAATTATATATACCCGTGCCAAAA 57.128 30.769 0.00 0.00 0.00 2.44
1861 4995 6.036408 TCGTGATATCAAAGACAAGCTGATTG 59.964 38.462 7.07 3.77 45.01 2.67
1863 4997 5.664457 TCGTGATATCAAAGACAAGCTGAT 58.336 37.500 7.07 0.00 34.29 2.90
1867 5001 5.973651 TCATCGTGATATCAAAGACAAGC 57.026 39.130 7.07 0.00 0.00 4.01
1876 5010 7.554476 TGGTTGGTATTTTTCATCGTGATATCA 59.446 33.333 0.00 0.00 0.00 2.15
1877 5011 7.925993 TGGTTGGTATTTTTCATCGTGATATC 58.074 34.615 0.00 0.00 0.00 1.63
1878 5012 7.873719 TGGTTGGTATTTTTCATCGTGATAT 57.126 32.000 0.00 0.00 0.00 1.63
1879 5013 7.627513 GCTTGGTTGGTATTTTTCATCGTGATA 60.628 37.037 0.00 0.00 0.00 2.15
1880 5014 6.582677 TTGGTTGGTATTTTTCATCGTGAT 57.417 33.333 0.00 0.00 0.00 3.06
1881 5015 5.563867 GCTTGGTTGGTATTTTTCATCGTGA 60.564 40.000 0.00 0.00 0.00 4.35
1882 5016 4.621034 GCTTGGTTGGTATTTTTCATCGTG 59.379 41.667 0.00 0.00 0.00 4.35
1883 5017 4.321675 GGCTTGGTTGGTATTTTTCATCGT 60.322 41.667 0.00 0.00 0.00 3.73
1884 5018 4.173256 GGCTTGGTTGGTATTTTTCATCG 58.827 43.478 0.00 0.00 0.00 3.84
1885 5019 5.146010 TGGCTTGGTTGGTATTTTTCATC 57.854 39.130 0.00 0.00 0.00 2.92
1886 5020 5.490159 CATGGCTTGGTTGGTATTTTTCAT 58.510 37.500 0.00 0.00 0.00 2.57
1887 5021 4.802248 GCATGGCTTGGTTGGTATTTTTCA 60.802 41.667 2.33 0.00 0.00 2.69
1888 5022 3.684305 GCATGGCTTGGTTGGTATTTTTC 59.316 43.478 2.33 0.00 0.00 2.29
1889 5023 3.072184 TGCATGGCTTGGTTGGTATTTTT 59.928 39.130 2.33 0.00 0.00 1.94
1890 5024 2.636893 TGCATGGCTTGGTTGGTATTTT 59.363 40.909 2.33 0.00 0.00 1.82
1891 5025 2.255406 TGCATGGCTTGGTTGGTATTT 58.745 42.857 2.33 0.00 0.00 1.40
1892 5026 1.935799 TGCATGGCTTGGTTGGTATT 58.064 45.000 2.33 0.00 0.00 1.89
1893 5027 1.826720 CTTGCATGGCTTGGTTGGTAT 59.173 47.619 2.33 0.00 0.00 2.73
1894 5028 1.202989 TCTTGCATGGCTTGGTTGGTA 60.203 47.619 2.33 0.00 0.00 3.25
1895 5029 0.469705 TCTTGCATGGCTTGGTTGGT 60.470 50.000 2.33 0.00 0.00 3.67
1896 5030 0.245539 CTCTTGCATGGCTTGGTTGG 59.754 55.000 2.33 0.00 0.00 3.77
1897 5031 0.245539 CCTCTTGCATGGCTTGGTTG 59.754 55.000 2.33 0.00 0.00 3.77
1898 5032 0.178953 ACCTCTTGCATGGCTTGGTT 60.179 50.000 2.33 0.00 0.00 3.67
1899 5033 0.896940 CACCTCTTGCATGGCTTGGT 60.897 55.000 2.33 1.57 0.00 3.67
1900 5034 0.609957 TCACCTCTTGCATGGCTTGG 60.610 55.000 2.33 1.01 0.00 3.61
1901 5035 0.809385 CTCACCTCTTGCATGGCTTG 59.191 55.000 0.00 0.00 0.00 4.01
1902 5036 0.323178 CCTCACCTCTTGCATGGCTT 60.323 55.000 0.00 0.00 0.00 4.35
1903 5037 1.302285 CCTCACCTCTTGCATGGCT 59.698 57.895 0.00 0.00 0.00 4.75
1904 5038 1.751927 CCCTCACCTCTTGCATGGC 60.752 63.158 0.00 0.00 0.00 4.40
1905 5039 0.393537 GACCCTCACCTCTTGCATGG 60.394 60.000 0.00 0.00 0.00 3.66
1906 5040 0.325933 TGACCCTCACCTCTTGCATG 59.674 55.000 0.00 0.00 0.00 4.06
1907 5041 1.067295 TTGACCCTCACCTCTTGCAT 58.933 50.000 0.00 0.00 0.00 3.96
1908 5042 0.843309 TTTGACCCTCACCTCTTGCA 59.157 50.000 0.00 0.00 0.00 4.08
1909 5043 1.882623 CTTTTGACCCTCACCTCTTGC 59.117 52.381 0.00 0.00 0.00 4.01
1910 5044 3.492102 TCTTTTGACCCTCACCTCTTG 57.508 47.619 0.00 0.00 0.00 3.02
1911 5045 3.748989 GCTTCTTTTGACCCTCACCTCTT 60.749 47.826 0.00 0.00 0.00 2.85
1912 5046 2.224646 GCTTCTTTTGACCCTCACCTCT 60.225 50.000 0.00 0.00 0.00 3.69
1913 5047 2.155279 GCTTCTTTTGACCCTCACCTC 58.845 52.381 0.00 0.00 0.00 3.85
1914 5048 1.494721 TGCTTCTTTTGACCCTCACCT 59.505 47.619 0.00 0.00 0.00 4.00
1915 5049 1.981256 TGCTTCTTTTGACCCTCACC 58.019 50.000 0.00 0.00 0.00 4.02
1916 5050 2.352127 GCATGCTTCTTTTGACCCTCAC 60.352 50.000 11.37 0.00 0.00 3.51
1917 5051 1.888512 GCATGCTTCTTTTGACCCTCA 59.111 47.619 11.37 0.00 0.00 3.86
1918 5052 1.888512 TGCATGCTTCTTTTGACCCTC 59.111 47.619 20.33 0.00 0.00 4.30
1919 5053 1.999648 TGCATGCTTCTTTTGACCCT 58.000 45.000 20.33 0.00 0.00 4.34
1920 5054 2.036346 ACTTGCATGCTTCTTTTGACCC 59.964 45.455 20.33 0.00 0.00 4.46
1921 5055 3.375782 ACTTGCATGCTTCTTTTGACC 57.624 42.857 20.33 0.00 0.00 4.02
1922 5056 4.913924 CAGTACTTGCATGCTTCTTTTGAC 59.086 41.667 20.33 6.19 0.00 3.18
1923 5057 4.821260 TCAGTACTTGCATGCTTCTTTTGA 59.179 37.500 20.33 12.88 0.00 2.69
1924 5058 5.112220 TCAGTACTTGCATGCTTCTTTTG 57.888 39.130 20.33 10.81 0.00 2.44
1925 5059 5.972107 ATCAGTACTTGCATGCTTCTTTT 57.028 34.783 20.33 0.00 0.00 2.27
1926 5060 5.972107 AATCAGTACTTGCATGCTTCTTT 57.028 34.783 20.33 1.22 0.00 2.52
1927 5061 7.443575 CCTATAATCAGTACTTGCATGCTTCTT 59.556 37.037 20.33 3.09 0.00 2.52
1928 5062 6.933521 CCTATAATCAGTACTTGCATGCTTCT 59.066 38.462 20.33 7.01 0.00 2.85
1929 5063 6.148480 CCCTATAATCAGTACTTGCATGCTTC 59.852 42.308 20.33 4.79 0.00 3.86
1930 5064 6.000219 CCCTATAATCAGTACTTGCATGCTT 59.000 40.000 20.33 5.75 0.00 3.91
1931 5065 5.513788 CCCCTATAATCAGTACTTGCATGCT 60.514 44.000 20.33 0.40 0.00 3.79
1932 5066 4.697352 CCCCTATAATCAGTACTTGCATGC 59.303 45.833 11.82 11.82 0.00 4.06
1933 5067 6.114187 TCCCCTATAATCAGTACTTGCATG 57.886 41.667 0.00 0.00 0.00 4.06
1934 5068 6.763715 TTCCCCTATAATCAGTACTTGCAT 57.236 37.500 0.00 0.00 0.00 3.96
1935 5069 6.101150 ACATTCCCCTATAATCAGTACTTGCA 59.899 38.462 0.00 0.00 0.00 4.08
1936 5070 6.534634 ACATTCCCCTATAATCAGTACTTGC 58.465 40.000 0.00 0.00 0.00 4.01
1937 5071 8.871125 AGTACATTCCCCTATAATCAGTACTTG 58.129 37.037 0.00 0.00 37.06 3.16
1939 5073 9.531158 GTAGTACATTCCCCTATAATCAGTACT 57.469 37.037 0.00 0.00 41.50 2.73
1940 5074 9.305555 TGTAGTACATTCCCCTATAATCAGTAC 57.694 37.037 0.00 0.00 0.00 2.73
1941 5075 9.305555 GTGTAGTACATTCCCCTATAATCAGTA 57.694 37.037 6.21 0.00 0.00 2.74
1942 5076 7.787904 TGTGTAGTACATTCCCCTATAATCAGT 59.212 37.037 6.21 0.00 33.42 3.41
1943 5077 8.190326 TGTGTAGTACATTCCCCTATAATCAG 57.810 38.462 6.21 0.00 33.42 2.90
1944 5078 8.555896 TTGTGTAGTACATTCCCCTATAATCA 57.444 34.615 6.21 0.00 39.48 2.57
1945 5079 9.841295 TTTTGTGTAGTACATTCCCCTATAATC 57.159 33.333 6.21 0.00 39.48 1.75
1969 5103 8.093927 TGCCAAAATGCTAGCTTATTAGTTTTT 58.906 29.630 17.23 2.58 0.00 1.94
1970 5104 7.545615 GTGCCAAAATGCTAGCTTATTAGTTTT 59.454 33.333 17.23 8.58 0.00 2.43
1971 5105 7.035612 GTGCCAAAATGCTAGCTTATTAGTTT 58.964 34.615 17.23 3.93 0.00 2.66
1972 5106 6.564328 GTGCCAAAATGCTAGCTTATTAGTT 58.436 36.000 17.23 0.00 0.00 2.24
1973 5107 5.220854 CGTGCCAAAATGCTAGCTTATTAGT 60.221 40.000 17.23 0.00 0.00 2.24
1974 5108 5.207768 CGTGCCAAAATGCTAGCTTATTAG 58.792 41.667 17.23 4.99 0.00 1.73
1975 5109 4.036262 CCGTGCCAAAATGCTAGCTTATTA 59.964 41.667 17.23 0.00 0.00 0.98
1976 5110 3.181487 CCGTGCCAAAATGCTAGCTTATT 60.181 43.478 17.23 5.32 0.00 1.40
1977 5111 2.358898 CCGTGCCAAAATGCTAGCTTAT 59.641 45.455 17.23 0.00 0.00 1.73
1978 5112 1.742831 CCGTGCCAAAATGCTAGCTTA 59.257 47.619 17.23 0.00 0.00 3.09
1979 5113 0.527565 CCGTGCCAAAATGCTAGCTT 59.472 50.000 17.23 6.81 0.00 3.74
1980 5114 1.315257 CCCGTGCCAAAATGCTAGCT 61.315 55.000 17.23 0.00 0.00 3.32
1981 5115 1.139520 CCCGTGCCAAAATGCTAGC 59.860 57.895 8.10 8.10 0.00 3.42
1982 5116 1.139520 GCCCGTGCCAAAATGCTAG 59.860 57.895 0.00 0.00 0.00 3.42
1983 5117 0.969917 ATGCCCGTGCCAAAATGCTA 60.970 50.000 0.00 0.00 36.33 3.49
1984 5118 0.969917 TATGCCCGTGCCAAAATGCT 60.970 50.000 0.00 0.00 36.33 3.79
1985 5119 0.104671 ATATGCCCGTGCCAAAATGC 59.895 50.000 0.00 0.00 36.33 3.56
1986 5120 3.940209 ATATATGCCCGTGCCAAAATG 57.060 42.857 0.00 0.00 36.33 2.32
1987 5121 6.210385 TCAATTATATATGCCCGTGCCAAAAT 59.790 34.615 0.00 0.00 36.33 1.82
1988 5122 5.536538 TCAATTATATATGCCCGTGCCAAAA 59.463 36.000 0.00 0.00 36.33 2.44
1989 5123 5.073428 TCAATTATATATGCCCGTGCCAAA 58.927 37.500 0.00 0.00 36.33 3.28
1990 5124 4.657013 TCAATTATATATGCCCGTGCCAA 58.343 39.130 0.00 0.00 36.33 4.52
1991 5125 4.293662 TCAATTATATATGCCCGTGCCA 57.706 40.909 0.00 0.00 36.33 4.92
1992 5126 5.637006 TTTCAATTATATATGCCCGTGCC 57.363 39.130 0.00 0.00 36.33 5.01
1993 5127 8.532977 AAAATTTCAATTATATATGCCCGTGC 57.467 30.769 0.00 0.00 38.26 5.34
2046 5180 1.130749 TGGTTGGTGTTTTTCGTCGTG 59.869 47.619 0.00 0.00 0.00 4.35
2048 5182 2.446282 CTTGGTTGGTGTTTTTCGTCG 58.554 47.619 0.00 0.00 0.00 5.12
2055 5189 0.106521 GCATGGCTTGGTTGGTGTTT 59.893 50.000 2.33 0.00 0.00 2.83
2060 5194 0.245539 CTCTTGCATGGCTTGGTTGG 59.754 55.000 2.33 0.00 0.00 3.77
2068 5202 1.751927 CCCTCACCTCTTGCATGGC 60.752 63.158 0.00 0.00 0.00 4.40
2069 5203 0.393537 GACCCTCACCTCTTGCATGG 60.394 60.000 0.00 0.00 0.00 3.66
2073 5207 1.882623 CTTTTGACCCTCACCTCTTGC 59.117 52.381 0.00 0.00 0.00 4.01
2084 5218 2.036346 ACTTGCATGCTTCTTTTGACCC 59.964 45.455 20.33 0.00 0.00 4.46
2085 5219 3.375782 ACTTGCATGCTTCTTTTGACC 57.624 42.857 20.33 0.00 0.00 4.02
2089 5223 4.829064 TCGTTACTTGCATGCTTCTTTT 57.171 36.364 20.33 0.00 0.00 2.27
2107 5241 6.325545 TGTGTAGAACATTCCCCTATAATCGT 59.674 38.462 0.00 0.00 32.36 3.73
2125 5260 7.377397 GCGAATATTTTGTTGTTGTTGTGTAGA 59.623 33.333 0.00 0.00 0.00 2.59
2149 5284 3.353114 CTTGGTGCGATCGTGTGCG 62.353 63.158 17.81 0.00 39.92 5.34
2151 5286 0.948623 TTCCTTGGTGCGATCGTGTG 60.949 55.000 17.81 1.76 0.00 3.82
2152 5287 0.949105 GTTCCTTGGTGCGATCGTGT 60.949 55.000 17.81 0.00 0.00 4.49
2157 5292 2.632377 CATAGTGTTCCTTGGTGCGAT 58.368 47.619 0.00 0.00 0.00 4.58
2168 5303 5.169295 GTCACTTGTACCTCCATAGTGTTC 58.831 45.833 0.00 0.00 37.90 3.18
2172 5307 3.693807 TCGTCACTTGTACCTCCATAGT 58.306 45.455 0.00 0.00 0.00 2.12
2178 5313 5.258456 TGGATAATCGTCACTTGTACCTC 57.742 43.478 0.00 0.00 0.00 3.85
2192 5327 4.320494 GCATGGATCGTTGGTTGGATAATC 60.320 45.833 0.00 0.00 0.00 1.75
2200 5335 0.521291 CGTTGCATGGATCGTTGGTT 59.479 50.000 9.28 0.00 0.00 3.67
2206 5341 3.186909 TCTACTTTCGTTGCATGGATCG 58.813 45.455 11.03 11.03 0.00 3.69
2210 5345 2.932614 CCTCTCTACTTTCGTTGCATGG 59.067 50.000 0.00 0.00 0.00 3.66
2229 5364 1.132689 ACTTCACCAACTCCTCCTCCT 60.133 52.381 0.00 0.00 0.00 3.69
2230 5365 1.353091 ACTTCACCAACTCCTCCTCC 58.647 55.000 0.00 0.00 0.00 4.30
2231 5366 3.403968 GAAACTTCACCAACTCCTCCTC 58.596 50.000 0.00 0.00 0.00 3.71
2277 5412 1.407979 GAAATGCTCATGGCTTGGAGG 59.592 52.381 7.54 0.00 42.39 4.30
2280 5415 3.259064 CAAAGAAATGCTCATGGCTTGG 58.741 45.455 7.54 0.00 42.39 3.61
2281 5416 3.056393 TCCAAAGAAATGCTCATGGCTTG 60.056 43.478 7.54 0.00 42.39 4.01
2282 5417 3.167485 TCCAAAGAAATGCTCATGGCTT 58.833 40.909 7.54 0.00 42.39 4.35
2285 5420 3.191162 TCGTTCCAAAGAAATGCTCATGG 59.809 43.478 0.00 0.00 35.74 3.66
2287 5422 4.096984 GGATCGTTCCAAAGAAATGCTCAT 59.903 41.667 7.68 0.00 42.12 2.90
2320 5455 3.181485 GGAGGTGTATTCTTCTCCGACAG 60.181 52.174 0.00 0.00 36.78 3.51
2326 5461 7.506261 TGGATAACTAGGAGGTGTATTCTTCTC 59.494 40.741 0.00 0.00 0.00 2.87
2343 5478 7.914859 TCTAGATCGGTATCTGTGGATAACTA 58.085 38.462 0.00 0.00 42.60 2.24
2346 5481 6.181190 CCTCTAGATCGGTATCTGTGGATAA 58.819 44.000 0.00 0.00 42.60 1.75
2355 5490 5.335035 GCTGTTGTACCTCTAGATCGGTATC 60.335 48.000 12.65 8.25 38.01 2.24
2358 5493 2.688958 GCTGTTGTACCTCTAGATCGGT 59.311 50.000 8.60 8.60 37.31 4.69
2360 5495 3.378742 AGTGCTGTTGTACCTCTAGATCG 59.621 47.826 0.00 0.00 0.00 3.69
2367 5502 1.347320 GCGTAGTGCTGTTGTACCTC 58.653 55.000 0.00 0.00 41.73 3.85
2374 5509 0.387367 CAGAGTCGCGTAGTGCTGTT 60.387 55.000 5.77 0.00 43.27 3.16
2375 5510 1.210413 CAGAGTCGCGTAGTGCTGT 59.790 57.895 5.77 0.00 43.27 4.40
2376 5511 2.155194 GCAGAGTCGCGTAGTGCTG 61.155 63.158 5.77 9.20 43.27 4.41
2383 5518 0.038251 TTCTTCATGCAGAGTCGCGT 60.038 50.000 5.77 0.00 33.35 6.01
2384 5519 1.284657 ATTCTTCATGCAGAGTCGCG 58.715 50.000 0.00 0.00 33.35 5.87
2385 5520 5.415415 AATTATTCTTCATGCAGAGTCGC 57.585 39.130 0.00 0.77 0.00 5.19
2386 5521 7.936950 TCTAATTATTCTTCATGCAGAGTCG 57.063 36.000 0.00 0.00 0.00 4.18
2388 5523 9.896645 TTCTTCTAATTATTCTTCATGCAGAGT 57.103 29.630 0.00 0.00 0.00 3.24
2403 5538 7.659214 TCCCCTCCTTCTAGTTCTTCTAATTA 58.341 38.462 0.00 0.00 0.00 1.40
2407 5542 4.631664 GCTCCCCTCCTTCTAGTTCTTCTA 60.632 50.000 0.00 0.00 0.00 2.10
2408 5543 3.884123 GCTCCCCTCCTTCTAGTTCTTCT 60.884 52.174 0.00 0.00 0.00 2.85
2409 5544 2.432874 GCTCCCCTCCTTCTAGTTCTTC 59.567 54.545 0.00 0.00 0.00 2.87
2420 5555 1.297409 TACTAGGCTGCTCCCCTCCT 61.297 60.000 0.00 0.00 33.88 3.69
2421 5556 0.830023 CTACTAGGCTGCTCCCCTCC 60.830 65.000 0.00 0.00 33.88 4.30
2422 5557 1.468506 GCTACTAGGCTGCTCCCCTC 61.469 65.000 0.00 0.00 33.88 4.30
2423 5558 1.458588 GCTACTAGGCTGCTCCCCT 60.459 63.158 0.00 0.00 36.47 4.79
2424 5559 1.124477 ATGCTACTAGGCTGCTCCCC 61.124 60.000 0.00 0.00 34.51 4.81
2425 5560 1.273886 GTATGCTACTAGGCTGCTCCC 59.726 57.143 0.00 0.00 34.51 4.30
2426 5561 1.273886 GGTATGCTACTAGGCTGCTCC 59.726 57.143 0.00 0.00 0.00 4.70
2427 5562 2.734276 GGTATGCTACTAGGCTGCTC 57.266 55.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.