Multiple sequence alignment - TraesCS2D01G458700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G458700 chr2D 100.000 3707 0 0 1 3707 565518417 565514711 0.000000e+00 6846.0
1 TraesCS2D01G458700 chr2D 87.172 1294 81 33 570 1853 565587539 565586321 0.000000e+00 1391.0
2 TraesCS2D01G458700 chr2D 91.883 579 36 8 1 573 565588176 565587603 0.000000e+00 798.0
3 TraesCS2D01G458700 chr2D 88.330 557 32 13 2190 2718 565586086 565585535 4.040000e-179 638.0
4 TraesCS2D01G458700 chr2D 92.000 225 17 1 1630 1853 565484744 565484520 7.730000e-82 315.0
5 TraesCS2D01G458700 chr2D 78.923 427 45 31 2328 2719 565483978 565483562 7.950000e-62 248.0
6 TraesCS2D01G458700 chr2D 80.184 217 38 5 1642 1854 565591283 565591068 1.380000e-34 158.0
7 TraesCS2D01G458700 chr2B 86.825 630 56 16 570 1189 677880179 677879567 0.000000e+00 678.0
8 TraesCS2D01G458700 chr2B 84.667 450 42 18 2277 2719 677877612 677877183 1.230000e-114 424.0
9 TraesCS2D01G458700 chr2B 93.657 268 13 2 217 484 677880756 677880493 7.460000e-107 398.0
10 TraesCS2D01G458700 chr2B 95.516 223 10 0 1629 1851 677810958 677810736 1.270000e-94 357.0
11 TraesCS2D01G458700 chr2B 84.658 365 29 12 751 1113 677811657 677811318 4.590000e-89 339.0
12 TraesCS2D01G458700 chr2B 86.688 308 25 9 1975 2280 677878259 677877966 9.930000e-86 327.0
13 TraesCS2D01G458700 chr2B 92.825 223 16 0 1629 1851 677856467 677856245 1.280000e-84 324.0
14 TraesCS2D01G458700 chr2B 92.488 213 13 2 1 212 677881170 677880960 6.020000e-78 302.0
15 TraesCS2D01G458700 chr2B 82.514 366 29 10 751 1106 677857156 677856816 4.680000e-74 289.0
16 TraesCS2D01G458700 chr2B 85.772 246 23 8 2327 2568 677809985 677809748 2.210000e-62 250.0
17 TraesCS2D01G458700 chr2B 77.566 419 55 30 2328 2719 677852692 677852286 2.240000e-52 217.0
18 TraesCS2D01G458700 chr2B 80.702 228 41 2 1624 1848 677954121 677954348 1.370000e-39 174.0
19 TraesCS2D01G458700 chr2B 80.543 221 40 3 1631 1848 678089471 678089251 2.290000e-37 167.0
20 TraesCS2D01G458700 chr2B 81.290 155 18 8 2573 2719 677809704 677809553 8.410000e-22 115.0
21 TraesCS2D01G458700 chr2A 93.280 372 22 2 2197 2568 705918328 705917960 2.520000e-151 545.0
22 TraesCS2D01G458700 chr2A 85.341 498 45 16 1 474 705920754 705920261 1.200000e-134 490.0
23 TraesCS2D01G458700 chr2A 83.333 522 69 12 672 1189 705919741 705919234 2.020000e-127 466.0
24 TraesCS2D01G458700 chr2A 82.904 544 27 24 2572 3076 705917922 705917406 2.650000e-116 429.0
25 TraesCS2D01G458700 chr2A 85.037 401 28 14 720 1106 705883005 705882623 2.700000e-101 379.0
26 TraesCS2D01G458700 chr2A 96.804 219 7 0 1629 1847 705918879 705918661 2.100000e-97 366.0
27 TraesCS2D01G458700 chr2A 92.760 221 16 0 1630 1850 705882265 705882045 1.660000e-83 320.0
28 TraesCS2D01G458700 chr2A 95.833 144 4 1 2055 2198 705918551 705918410 8.010000e-57 231.0
29 TraesCS2D01G458700 chr2A 94.017 117 7 0 2327 2443 705881531 705881415 1.060000e-40 178.0
30 TraesCS2D01G458700 chr2A 84.426 122 14 3 3314 3432 335174817 335174698 8.410000e-22 115.0
31 TraesCS2D01G458700 chr2A 83.740 123 16 2 3314 3432 44439032 44438910 3.030000e-21 113.0
32 TraesCS2D01G458700 chr2A 92.500 80 4 2 3611 3688 705917268 705917189 3.030000e-21 113.0
33 TraesCS2D01G458700 chr2A 98.039 51 0 1 3292 3342 705917322 705917273 1.830000e-13 87.9
34 TraesCS2D01G458700 chr2A 77.333 150 23 9 2573 2714 705881274 705881128 1.100000e-10 78.7
35 TraesCS2D01G458700 chr6D 90.556 180 3 6 3440 3607 431404668 431404491 3.730000e-55 226.0
36 TraesCS2D01G458700 chr6D 90.000 180 4 6 3440 3607 431402452 431402629 1.730000e-53 220.0
37 TraesCS2D01G458700 chr6D 89.444 180 5 6 3440 3607 431401787 431401610 8.060000e-52 215.0
38 TraesCS2D01G458700 chr5D 90.556 180 3 6 3440 3607 6206062 6206239 3.730000e-55 226.0
39 TraesCS2D01G458700 chr5D 90.556 180 3 6 3440 3607 240132913 240132736 3.730000e-55 226.0
40 TraesCS2D01G458700 chr5D 90.000 180 4 6 3440 3607 554199241 554199418 1.730000e-53 220.0
41 TraesCS2D01G458700 chr4D 90.556 180 2 7 3440 3607 19911723 19911547 1.340000e-54 224.0
42 TraesCS2D01G458700 chr1D 90.000 180 4 6 3440 3607 394180678 394180501 1.730000e-53 220.0
43 TraesCS2D01G458700 chr1D 81.982 111 12 3 3314 3417 466375555 466375664 1.830000e-13 87.9
44 TraesCS2D01G458700 chr1D 91.667 48 1 1 3443 3487 440594511 440594464 3.090000e-06 63.9
45 TraesCS2D01G458700 chr1B 90.000 180 4 6 3440 3607 347444201 347444378 1.730000e-53 220.0
46 TraesCS2D01G458700 chr1B 88.618 123 13 1 986 1107 162806246 162806124 8.290000e-32 148.0
47 TraesCS2D01G458700 chr1A 81.106 217 36 4 1631 1846 397770019 397770231 6.370000e-38 169.0
48 TraesCS2D01G458700 chr1A 90.909 110 10 0 998 1107 101335648 101335539 8.290000e-32 148.0
49 TraesCS2D01G458700 chrUn 90.909 110 10 0 998 1107 478858122 478858013 8.290000e-32 148.0
50 TraesCS2D01G458700 chr3D 82.677 127 17 3 3295 3417 120279560 120279685 1.410000e-19 108.0
51 TraesCS2D01G458700 chr7B 85.417 96 11 1 3321 3413 655570050 655570145 3.050000e-16 97.1
52 TraesCS2D01G458700 chr5B 83.178 107 14 2 3314 3417 239338186 239338291 1.100000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G458700 chr2D 565514711 565518417 3706 True 6846.000000 6846 100.000000 1 3707 1 chr2D.!!$R1 3706
1 TraesCS2D01G458700 chr2D 565585535 565591283 5748 True 746.250000 1391 86.892250 1 2718 4 chr2D.!!$R3 2717
2 TraesCS2D01G458700 chr2D 565483562 565484744 1182 True 281.500000 315 85.461500 1630 2719 2 chr2D.!!$R2 1089
3 TraesCS2D01G458700 chr2B 677877183 677881170 3987 True 425.800000 678 88.865000 1 2719 5 chr2B.!!$R4 2718
4 TraesCS2D01G458700 chr2B 677852286 677857156 4870 True 276.666667 324 84.301667 751 2719 3 chr2B.!!$R3 1968
5 TraesCS2D01G458700 chr2B 677809553 677811657 2104 True 265.250000 357 86.809000 751 2719 4 chr2B.!!$R2 1968
6 TraesCS2D01G458700 chr2A 705917189 705920754 3565 True 340.987500 545 91.004250 1 3688 8 chr2A.!!$R4 3687
7 TraesCS2D01G458700 chr2A 705881128 705883005 1877 True 238.925000 379 87.286750 720 2714 4 chr2A.!!$R3 1994
8 TraesCS2D01G458700 chr6D 431401610 431404668 3058 True 220.500000 226 90.000000 3440 3607 2 chr6D.!!$R1 167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 4662 0.548989 TACCAACACCACCAAGCACT 59.451 50.0 0.0 0.0 0.0 4.40 F
1495 5289 0.035739 TGTTTAGCACTCCCGTTCCC 59.964 55.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 9440 1.064463 AGGCACCGATCCATGAAACAT 60.064 47.619 0.00 0.0 0.00 2.71 R
3296 11951 0.034089 AGGCCAACCCTCATGTAAGC 60.034 55.000 5.01 0.0 41.21 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 3325 6.539173 TCATGCCCTCTTAACAAAGAAGTTA 58.461 36.000 0.00 0.00 33.07 2.24
487 3821 2.998279 GCCTTGCCACCTGTCATGC 61.998 63.158 0.00 0.00 0.00 4.06
508 3842 2.685017 TGCCGCCTCAGTCATCCT 60.685 61.111 0.00 0.00 0.00 3.24
510 3844 1.522580 GCCGCCTCAGTCATCCTTC 60.523 63.158 0.00 0.00 0.00 3.46
522 3856 3.529319 AGTCATCCTTCTAAATGCCCCTT 59.471 43.478 0.00 0.00 0.00 3.95
524 3858 3.788142 TCATCCTTCTAAATGCCCCTTCT 59.212 43.478 0.00 0.00 0.00 2.85
525 3859 3.933861 TCCTTCTAAATGCCCCTTCTC 57.066 47.619 0.00 0.00 0.00 2.87
526 3860 2.509964 TCCTTCTAAATGCCCCTTCTCC 59.490 50.000 0.00 0.00 0.00 3.71
527 3861 2.242196 CCTTCTAAATGCCCCTTCTCCA 59.758 50.000 0.00 0.00 0.00 3.86
528 3862 3.282885 CTTCTAAATGCCCCTTCTCCAC 58.717 50.000 0.00 0.00 0.00 4.02
531 3865 2.168272 AAATGCCCCTTCTCCACCCC 62.168 60.000 0.00 0.00 0.00 4.95
553 3887 3.411517 CCGCCCACCATCCTTCCT 61.412 66.667 0.00 0.00 0.00 3.36
739 4427 1.892209 ATGGACCGGTTCAACAACTC 58.108 50.000 22.13 0.00 32.50 3.01
763 4451 6.101150 TCTGCCAGGTTTAGTTATATGGACAT 59.899 38.462 0.00 0.00 0.00 3.06
898 4593 3.717294 CCCGTCACCTCCCTTGGG 61.717 72.222 0.00 0.00 0.00 4.12
928 4623 5.169295 GCCTATATAAGAACGTCCATCACC 58.831 45.833 0.00 0.00 0.00 4.02
931 4626 5.825593 ATATAAGAACGTCCATCACCCAT 57.174 39.130 0.00 0.00 0.00 4.00
932 4627 2.879103 AAGAACGTCCATCACCCATT 57.121 45.000 0.00 0.00 0.00 3.16
958 4662 0.548989 TACCAACACCACCAAGCACT 59.451 50.000 0.00 0.00 0.00 4.40
1021 4740 3.111853 TGCAGATCTTTGTGAAGACGT 57.888 42.857 0.00 0.00 44.27 4.34
1035 4754 1.111116 AGACGTTGACCGGGAAGACA 61.111 55.000 6.32 0.00 42.24 3.41
1126 4851 1.056660 ACATGTTCAGTCCCCGTCTT 58.943 50.000 0.00 0.00 0.00 3.01
1136 4868 1.275291 GTCCCCGTCTTGAATCACTGA 59.725 52.381 0.00 0.00 0.00 3.41
1170 4907 0.872021 CTACTTGCTGGCCGATCGAC 60.872 60.000 18.66 4.24 0.00 4.20
1282 5024 2.380084 GGCACCTCACTTGTCGAATA 57.620 50.000 0.00 0.00 0.00 1.75
1283 5025 2.906354 GGCACCTCACTTGTCGAATAT 58.094 47.619 0.00 0.00 0.00 1.28
1284 5026 4.054780 GGCACCTCACTTGTCGAATATA 57.945 45.455 0.00 0.00 0.00 0.86
1285 5027 4.051922 GGCACCTCACTTGTCGAATATAG 58.948 47.826 0.00 0.00 0.00 1.31
1288 5030 5.581085 GCACCTCACTTGTCGAATATAGTTT 59.419 40.000 0.00 0.00 0.00 2.66
1289 5031 6.237861 GCACCTCACTTGTCGAATATAGTTTC 60.238 42.308 0.00 0.00 0.00 2.78
1290 5032 6.255887 CACCTCACTTGTCGAATATAGTTTCC 59.744 42.308 0.00 0.00 0.00 3.13
1291 5033 5.753921 CCTCACTTGTCGAATATAGTTTCCC 59.246 44.000 0.00 0.00 0.00 3.97
1292 5034 6.407074 CCTCACTTGTCGAATATAGTTTCCCT 60.407 42.308 0.00 0.00 0.00 4.20
1293 5035 6.570692 TCACTTGTCGAATATAGTTTCCCTC 58.429 40.000 0.00 0.00 0.00 4.30
1294 5036 6.153851 TCACTTGTCGAATATAGTTTCCCTCA 59.846 38.462 0.00 0.00 0.00 3.86
1295 5037 6.816640 CACTTGTCGAATATAGTTTCCCTCAA 59.183 38.462 0.00 0.00 0.00 3.02
1296 5038 7.333423 CACTTGTCGAATATAGTTTCCCTCAAA 59.667 37.037 0.00 0.00 0.00 2.69
1297 5039 7.881232 ACTTGTCGAATATAGTTTCCCTCAAAA 59.119 33.333 0.00 0.00 0.00 2.44
1352 5095 5.221803 CCCTCCATGCTGTCTTAGATTACAT 60.222 44.000 0.00 0.00 0.00 2.29
1416 5191 4.110482 CCGAGGTTAGATAGTTTTGGACG 58.890 47.826 0.00 0.00 0.00 4.79
1417 5192 4.381292 CCGAGGTTAGATAGTTTTGGACGT 60.381 45.833 0.00 0.00 0.00 4.34
1418 5193 4.797349 CGAGGTTAGATAGTTTTGGACGTC 59.203 45.833 7.13 7.13 0.00 4.34
1419 5194 5.392811 CGAGGTTAGATAGTTTTGGACGTCT 60.393 44.000 16.46 0.00 34.17 4.18
1420 5195 5.721232 AGGTTAGATAGTTTTGGACGTCTG 58.279 41.667 16.46 0.00 32.69 3.51
1421 5196 5.245526 AGGTTAGATAGTTTTGGACGTCTGT 59.754 40.000 16.46 0.00 32.69 3.41
1424 5199 7.359849 GGTTAGATAGTTTTGGACGTCTGTTTC 60.360 40.741 16.46 4.18 32.69 2.78
1425 5200 5.855045 AGATAGTTTTGGACGTCTGTTTCT 58.145 37.500 16.46 11.12 30.35 2.52
1426 5201 6.289064 AGATAGTTTTGGACGTCTGTTTCTT 58.711 36.000 16.46 0.00 30.35 2.52
1427 5202 4.616181 AGTTTTGGACGTCTGTTTCTTG 57.384 40.909 16.46 0.00 0.00 3.02
1428 5203 4.007659 AGTTTTGGACGTCTGTTTCTTGT 58.992 39.130 16.46 0.00 0.00 3.16
1429 5204 4.095610 GTTTTGGACGTCTGTTTCTTGTG 58.904 43.478 16.46 0.00 0.00 3.33
1430 5205 1.295792 TGGACGTCTGTTTCTTGTGC 58.704 50.000 16.46 0.00 0.00 4.57
1467 5261 5.192327 AGGATTTGCTTCTTGTTTGACAG 57.808 39.130 0.00 0.00 0.00 3.51
1468 5262 4.889409 AGGATTTGCTTCTTGTTTGACAGA 59.111 37.500 0.00 0.00 0.00 3.41
1469 5263 5.009410 AGGATTTGCTTCTTGTTTGACAGAG 59.991 40.000 0.00 0.00 0.00 3.35
1473 5267 4.517285 TGCTTCTTGTTTGACAGAGAACT 58.483 39.130 0.00 0.00 0.00 3.01
1483 5277 6.017934 TGTTTGACAGAGAACTCATGTTTAGC 60.018 38.462 4.64 0.00 36.39 3.09
1493 5287 2.673368 CTCATGTTTAGCACTCCCGTTC 59.327 50.000 0.00 0.00 0.00 3.95
1495 5289 0.035739 TGTTTAGCACTCCCGTTCCC 59.964 55.000 0.00 0.00 0.00 3.97
1497 5291 1.474332 TTTAGCACTCCCGTTCCCGT 61.474 55.000 0.00 0.00 0.00 5.28
1585 5405 0.167470 TCACGAGCGAGGAACTAACG 59.833 55.000 0.00 0.00 41.55 3.18
1589 5409 0.524862 GAGCGAGGAACTAACGGTGA 59.475 55.000 0.00 0.00 41.55 4.02
1592 5412 2.028385 AGCGAGGAACTAACGGTGAATT 60.028 45.455 0.00 0.00 41.55 2.17
1596 5416 5.064325 GCGAGGAACTAACGGTGAATTATTT 59.936 40.000 0.00 0.00 41.55 1.40
1598 5418 7.524065 CGAGGAACTAACGGTGAATTATTTTT 58.476 34.615 0.00 0.00 41.55 1.94
1685 5508 1.056700 GGGGAAGCAGCTGGAGGATA 61.057 60.000 17.12 0.00 0.00 2.59
1738 5561 0.981183 AATCCACGCTTCACCTGGTA 59.019 50.000 0.00 0.00 0.00 3.25
1795 6265 0.111253 AGAACCTTGAGCCCAACCTG 59.889 55.000 0.00 0.00 0.00 4.00
1898 9440 9.522804 GTACCATTATGTTTGTTGTTTTTCTCA 57.477 29.630 0.00 0.00 0.00 3.27
1951 9499 4.171005 CGCATGAATTGTGATCTTGCTTT 58.829 39.130 0.00 0.00 42.55 3.51
2040 9590 6.595326 TGATTTTCGTTACATCTTGCTGAGAT 59.405 34.615 0.00 0.00 46.12 2.75
2099 9662 4.977739 TCTCACCTTCAATATCATCCCCTT 59.022 41.667 0.00 0.00 0.00 3.95
2160 9723 0.534873 AGCGGTTTTGGTTTGCTTGT 59.465 45.000 0.00 0.00 30.27 3.16
2256 9965 2.567615 AGTGCTCCCTCGAAACTGTAAT 59.432 45.455 0.00 0.00 0.00 1.89
2283 10765 1.229428 ACAGAGTTGTCACCAATGCG 58.771 50.000 0.00 0.00 29.46 4.73
2293 10775 3.628032 TGTCACCAATGCGTAAACTGAAA 59.372 39.130 0.00 0.00 0.00 2.69
2456 10988 7.175990 TGTTATTGAAGTGCTTTACCCCTTTAG 59.824 37.037 0.00 0.00 0.00 1.85
2511 11045 8.768955 GCTGTTCTTGGTTATCATATCACTAAG 58.231 37.037 0.00 0.00 31.96 2.18
2538 11073 4.759516 TGTTCGGCCTTAATCTTTTGAC 57.240 40.909 0.00 0.00 0.00 3.18
2550 11085 8.739039 CCTTAATCTTTTGACCAATATGTCACA 58.261 33.333 0.00 0.00 44.55 3.58
2559 11094 5.185442 TGACCAATATGTCACAATTGCATGT 59.815 36.000 5.05 0.00 40.22 3.21
2568 11103 6.437928 TGTCACAATTGCATGTTTAGAGTTC 58.562 36.000 5.05 0.00 0.00 3.01
2569 11104 5.565259 GTCACAATTGCATGTTTAGAGTTCG 59.435 40.000 5.05 0.00 0.00 3.95
2570 11105 4.321745 CACAATTGCATGTTTAGAGTTCGC 59.678 41.667 5.05 0.00 0.00 4.70
2724 11320 3.680937 CCTAAACGTTGGAAATGCGTCTA 59.319 43.478 0.00 0.00 37.92 2.59
2726 11322 1.722011 ACGTTGGAAATGCGTCTAGG 58.278 50.000 0.00 0.00 35.88 3.02
2734 11347 1.200519 AATGCGTCTAGGGCCAGTTA 58.799 50.000 6.18 0.00 0.00 2.24
2747 11360 3.279434 GGCCAGTTATGTCCTAGTTTGG 58.721 50.000 0.00 0.00 0.00 3.28
2769 11385 4.022068 GGAGTGTTGGATTTTGCTGAATCA 60.022 41.667 12.52 0.00 37.69 2.57
2797 11413 5.648526 AGCGTCGTCATATATATTGGAGTCT 59.351 40.000 0.00 0.00 0.00 3.24
2834 11458 7.309990 CCAGTTGATTGGATTTTGAACCTATGT 60.310 37.037 0.00 0.00 40.87 2.29
2838 11462 9.473007 TTGATTGGATTTTGAACCTATGTATGA 57.527 29.630 0.00 0.00 0.00 2.15
2897 11525 8.506168 TGAGTTGTTTATTTTGAGTGAGTTCT 57.494 30.769 0.00 0.00 0.00 3.01
2898 11526 8.956426 TGAGTTGTTTATTTTGAGTGAGTTCTT 58.044 29.630 0.00 0.00 0.00 2.52
2921 11549 9.241919 TCTTATCTTGGATTTGCTTAATCAACA 57.758 29.630 12.21 2.40 43.72 3.33
2922 11550 9.859427 CTTATCTTGGATTTGCTTAATCAACAA 57.141 29.630 12.21 8.19 43.72 2.83
2923 11551 9.859427 TTATCTTGGATTTGCTTAATCAACAAG 57.141 29.630 11.67 11.67 43.72 3.16
2957 11585 0.107643 TCACCACAAATCTCCGCACA 59.892 50.000 0.00 0.00 0.00 4.57
2958 11586 0.518636 CACCACAAATCTCCGCACAG 59.481 55.000 0.00 0.00 0.00 3.66
2966 11594 4.161333 CAAATCTCCGCACAGAATCAAAC 58.839 43.478 0.00 0.00 0.00 2.93
3001 11636 6.319715 AGTCACACCCCACCTTTTTATTAAT 58.680 36.000 0.00 0.00 0.00 1.40
3002 11637 6.436218 AGTCACACCCCACCTTTTTATTAATC 59.564 38.462 0.00 0.00 0.00 1.75
3003 11638 6.436218 GTCACACCCCACCTTTTTATTAATCT 59.564 38.462 0.00 0.00 0.00 2.40
3004 11639 7.013834 TCACACCCCACCTTTTTATTAATCTT 58.986 34.615 0.00 0.00 0.00 2.40
3005 11640 7.511028 TCACACCCCACCTTTTTATTAATCTTT 59.489 33.333 0.00 0.00 0.00 2.52
3006 11641 7.602265 CACACCCCACCTTTTTATTAATCTTTG 59.398 37.037 0.00 0.00 0.00 2.77
3007 11642 7.102993 CACCCCACCTTTTTATTAATCTTTGG 58.897 38.462 0.00 0.00 0.00 3.28
3008 11643 6.112734 CCCCACCTTTTTATTAATCTTTGGC 58.887 40.000 0.00 0.00 0.00 4.52
3009 11644 6.070251 CCCCACCTTTTTATTAATCTTTGGCT 60.070 38.462 0.00 0.00 0.00 4.75
3010 11645 7.394016 CCCACCTTTTTATTAATCTTTGGCTT 58.606 34.615 0.00 0.00 0.00 4.35
3011 11646 7.334171 CCCACCTTTTTATTAATCTTTGGCTTG 59.666 37.037 0.00 0.00 0.00 4.01
3012 11647 7.334171 CCACCTTTTTATTAATCTTTGGCTTGG 59.666 37.037 0.00 0.00 0.00 3.61
3013 11648 7.334171 CACCTTTTTATTAATCTTTGGCTTGGG 59.666 37.037 0.00 0.00 0.00 4.12
3014 11649 7.236640 ACCTTTTTATTAATCTTTGGCTTGGGA 59.763 33.333 0.00 0.00 0.00 4.37
3015 11650 8.100164 CCTTTTTATTAATCTTTGGCTTGGGAA 58.900 33.333 0.00 0.00 0.00 3.97
3076 11713 3.979501 AAATCAATGGCCCACTAGGAT 57.020 42.857 0.00 0.00 38.24 3.24
3077 11714 5.514834 GCTAAATCAATGGCCCACTAGGATA 60.515 44.000 0.00 0.00 38.24 2.59
3078 11715 5.605540 AAATCAATGGCCCACTAGGATAT 57.394 39.130 0.00 0.00 38.24 1.63
3079 11716 6.718593 AAATCAATGGCCCACTAGGATATA 57.281 37.500 0.00 0.00 38.24 0.86
3080 11717 5.700402 ATCAATGGCCCACTAGGATATAC 57.300 43.478 0.00 0.00 38.24 1.47
3081 11718 3.513912 TCAATGGCCCACTAGGATATACG 59.486 47.826 0.00 0.00 38.24 3.06
3082 11719 2.984435 TGGCCCACTAGGATATACGA 57.016 50.000 0.00 0.00 38.24 3.43
3083 11720 2.803956 TGGCCCACTAGGATATACGAG 58.196 52.381 0.00 0.00 38.24 4.18
3084 11721 1.477295 GGCCCACTAGGATATACGAGC 59.523 57.143 0.00 0.00 38.24 5.03
3085 11722 2.168496 GCCCACTAGGATATACGAGCA 58.832 52.381 0.00 0.00 38.24 4.26
3086 11723 2.761208 GCCCACTAGGATATACGAGCAT 59.239 50.000 0.00 0.00 38.24 3.79
3087 11724 3.952323 GCCCACTAGGATATACGAGCATA 59.048 47.826 0.00 0.00 38.24 3.14
3088 11725 4.585162 GCCCACTAGGATATACGAGCATAT 59.415 45.833 0.00 0.00 38.24 1.78
3089 11726 5.768662 GCCCACTAGGATATACGAGCATATA 59.231 44.000 0.00 0.00 38.24 0.86
3090 11727 6.072397 GCCCACTAGGATATACGAGCATATAG 60.072 46.154 0.00 0.00 38.24 1.31
3091 11728 6.072397 CCCACTAGGATATACGAGCATATAGC 60.072 46.154 0.00 0.00 40.66 2.97
3092 11729 6.486993 CCACTAGGATATACGAGCATATAGCA 59.513 42.308 0.00 0.00 41.58 3.49
3093 11730 7.013369 CCACTAGGATATACGAGCATATAGCAA 59.987 40.741 0.00 0.00 41.58 3.91
3110 11747 2.791383 CAAACATTGCAACGAGGGAA 57.209 45.000 0.00 0.00 0.00 3.97
3111 11748 3.090952 CAAACATTGCAACGAGGGAAA 57.909 42.857 0.00 0.00 0.00 3.13
3112 11749 3.452474 CAAACATTGCAACGAGGGAAAA 58.548 40.909 0.00 0.00 0.00 2.29
3113 11750 3.810310 AACATTGCAACGAGGGAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
3141 11778 2.719798 GCACCTAGCGCAATAAACATG 58.280 47.619 11.47 0.00 0.00 3.21
3142 11779 2.541588 GCACCTAGCGCAATAAACATGG 60.542 50.000 11.47 0.09 0.00 3.66
3143 11780 1.676006 ACCTAGCGCAATAAACATGGC 59.324 47.619 11.47 0.00 0.00 4.40
3144 11781 1.949525 CCTAGCGCAATAAACATGGCT 59.050 47.619 11.47 0.00 34.69 4.75
3145 11782 2.031682 CCTAGCGCAATAAACATGGCTC 60.032 50.000 11.47 0.00 32.29 4.70
3146 11783 1.462616 AGCGCAATAAACATGGCTCA 58.537 45.000 11.47 0.00 0.00 4.26
3147 11784 1.818060 AGCGCAATAAACATGGCTCAA 59.182 42.857 11.47 0.00 0.00 3.02
3148 11785 1.919918 GCGCAATAAACATGGCTCAAC 59.080 47.619 0.30 0.00 0.00 3.18
3149 11786 2.529151 CGCAATAAACATGGCTCAACC 58.471 47.619 0.00 0.00 39.84 3.77
3150 11787 2.735126 CGCAATAAACATGGCTCAACCC 60.735 50.000 0.00 0.00 37.83 4.11
3151 11788 2.418609 GCAATAAACATGGCTCAACCCC 60.419 50.000 0.00 0.00 37.83 4.95
3152 11789 3.099141 CAATAAACATGGCTCAACCCCT 58.901 45.455 0.00 0.00 37.83 4.79
3153 11790 2.507407 TAAACATGGCTCAACCCCTC 57.493 50.000 0.00 0.00 37.83 4.30
3154 11791 0.251787 AAACATGGCTCAACCCCTCC 60.252 55.000 0.00 0.00 37.83 4.30
3155 11792 1.434513 AACATGGCTCAACCCCTCCA 61.435 55.000 0.00 0.00 37.83 3.86
3156 11793 1.379044 CATGGCTCAACCCCTCCAC 60.379 63.158 0.00 0.00 37.83 4.02
3157 11794 2.971598 ATGGCTCAACCCCTCCACG 61.972 63.158 0.00 0.00 37.83 4.94
3158 11795 4.410400 GGCTCAACCCCTCCACGG 62.410 72.222 0.00 0.00 0.00 4.94
3167 11804 3.077907 CCTCCACGGGTCCATGTT 58.922 61.111 0.00 0.00 0.00 2.71
3168 11805 1.378762 CCTCCACGGGTCCATGTTT 59.621 57.895 0.00 0.00 0.00 2.83
3169 11806 0.960364 CCTCCACGGGTCCATGTTTG 60.960 60.000 0.00 0.00 0.00 2.93
3170 11807 1.586154 CTCCACGGGTCCATGTTTGC 61.586 60.000 0.00 0.00 0.00 3.68
3171 11808 2.635443 CCACGGGTCCATGTTTGCC 61.635 63.158 0.00 0.00 0.00 4.52
3172 11809 2.282887 ACGGGTCCATGTTTGCCC 60.283 61.111 0.00 0.00 37.79 5.36
3173 11810 3.068064 CGGGTCCATGTTTGCCCC 61.068 66.667 0.00 0.00 37.89 5.80
3174 11811 2.445155 GGGTCCATGTTTGCCCCT 59.555 61.111 0.00 0.00 35.18 4.79
3175 11812 1.682344 GGGTCCATGTTTGCCCCTC 60.682 63.158 0.00 0.00 35.18 4.30
3176 11813 1.682344 GGTCCATGTTTGCCCCTCC 60.682 63.158 0.00 0.00 0.00 4.30
3177 11814 1.076549 GTCCATGTTTGCCCCTCCA 59.923 57.895 0.00 0.00 0.00 3.86
3178 11815 1.076549 TCCATGTTTGCCCCTCCAC 59.923 57.895 0.00 0.00 0.00 4.02
3179 11816 1.077265 CCATGTTTGCCCCTCCACT 59.923 57.895 0.00 0.00 0.00 4.00
3180 11817 0.542702 CCATGTTTGCCCCTCCACTT 60.543 55.000 0.00 0.00 0.00 3.16
3181 11818 0.890683 CATGTTTGCCCCTCCACTTC 59.109 55.000 0.00 0.00 0.00 3.01
3182 11819 0.779997 ATGTTTGCCCCTCCACTTCT 59.220 50.000 0.00 0.00 0.00 2.85
3183 11820 0.178992 TGTTTGCCCCTCCACTTCTG 60.179 55.000 0.00 0.00 0.00 3.02
3184 11821 0.178990 GTTTGCCCCTCCACTTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
3185 11822 0.178992 TTTGCCCCTCCACTTCTGTG 60.179 55.000 0.00 0.00 43.45 3.66
3197 11834 3.926616 CACTTCTGTGGACGTTTATCCT 58.073 45.455 0.00 0.00 40.33 3.24
3198 11835 4.315803 CACTTCTGTGGACGTTTATCCTT 58.684 43.478 0.00 0.00 40.33 3.36
3199 11836 4.389077 CACTTCTGTGGACGTTTATCCTTC 59.611 45.833 0.00 0.00 40.33 3.46
3200 11837 4.283722 ACTTCTGTGGACGTTTATCCTTCT 59.716 41.667 0.00 0.00 39.75 2.85
3201 11838 4.884668 TCTGTGGACGTTTATCCTTCTT 57.115 40.909 0.00 0.00 39.75 2.52
3202 11839 5.223449 TCTGTGGACGTTTATCCTTCTTT 57.777 39.130 0.00 0.00 39.75 2.52
3203 11840 5.617252 TCTGTGGACGTTTATCCTTCTTTT 58.383 37.500 0.00 0.00 39.75 2.27
3204 11841 5.699458 TCTGTGGACGTTTATCCTTCTTTTC 59.301 40.000 0.00 0.00 39.75 2.29
3205 11842 4.449743 TGTGGACGTTTATCCTTCTTTTCG 59.550 41.667 0.00 0.00 39.75 3.46
3206 11843 3.434299 TGGACGTTTATCCTTCTTTTCGC 59.566 43.478 0.00 0.00 39.75 4.70
3207 11844 3.181513 GGACGTTTATCCTTCTTTTCGCC 60.182 47.826 0.00 0.00 35.68 5.54
3208 11845 2.745821 ACGTTTATCCTTCTTTTCGCCC 59.254 45.455 0.00 0.00 0.00 6.13
3209 11846 3.007635 CGTTTATCCTTCTTTTCGCCCT 58.992 45.455 0.00 0.00 0.00 5.19
3210 11847 3.063588 CGTTTATCCTTCTTTTCGCCCTC 59.936 47.826 0.00 0.00 0.00 4.30
3211 11848 3.992943 TTATCCTTCTTTTCGCCCTCA 57.007 42.857 0.00 0.00 0.00 3.86
3212 11849 2.115343 ATCCTTCTTTTCGCCCTCAC 57.885 50.000 0.00 0.00 0.00 3.51
3213 11850 0.036306 TCCTTCTTTTCGCCCTCACC 59.964 55.000 0.00 0.00 0.00 4.02
3214 11851 0.036875 CCTTCTTTTCGCCCTCACCT 59.963 55.000 0.00 0.00 0.00 4.00
3215 11852 1.160137 CTTCTTTTCGCCCTCACCTG 58.840 55.000 0.00 0.00 0.00 4.00
3216 11853 0.250727 TTCTTTTCGCCCTCACCTGG 60.251 55.000 0.00 0.00 0.00 4.45
3223 11860 2.608988 CCCTCACCTGGGCAGACT 60.609 66.667 0.00 0.00 40.84 3.24
3224 11861 2.667418 CCTCACCTGGGCAGACTG 59.333 66.667 0.00 0.00 0.00 3.51
3225 11862 2.046507 CTCACCTGGGCAGACTGC 60.047 66.667 19.55 19.55 44.08 4.40
3236 11873 2.926778 GCAGACTGCCCATCTAATCT 57.073 50.000 17.01 0.00 37.42 2.40
3237 11874 3.205784 GCAGACTGCCCATCTAATCTT 57.794 47.619 17.01 0.00 37.42 2.40
3238 11875 4.342862 GCAGACTGCCCATCTAATCTTA 57.657 45.455 17.01 0.00 37.42 2.10
3239 11876 4.708177 GCAGACTGCCCATCTAATCTTAA 58.292 43.478 17.01 0.00 37.42 1.85
3240 11877 5.312079 GCAGACTGCCCATCTAATCTTAAT 58.688 41.667 17.01 0.00 37.42 1.40
3241 11878 5.411053 GCAGACTGCCCATCTAATCTTAATC 59.589 44.000 17.01 0.00 37.42 1.75
3242 11879 5.936956 CAGACTGCCCATCTAATCTTAATCC 59.063 44.000 0.00 0.00 0.00 3.01
3246 11883 5.634118 TGCCCATCTAATCTTAATCCCAAG 58.366 41.667 0.00 0.00 0.00 3.61
3250 11887 7.115414 CCCATCTAATCTTAATCCCAAGGATC 58.885 42.308 0.00 0.00 42.27 3.36
3265 11920 2.045926 ATCTTGGCCACCGCAGAC 60.046 61.111 3.88 0.00 36.38 3.51
3285 11940 1.468395 CCCGCGCCAACGAAAATTTAT 60.468 47.619 0.00 0.00 43.93 1.40
3286 11941 2.223294 CCCGCGCCAACGAAAATTTATA 60.223 45.455 0.00 0.00 43.93 0.98
3293 11948 6.730177 GCGCCAACGAAAATTTATAACTTTTG 59.270 34.615 15.79 10.24 43.93 2.44
3296 11951 9.791838 GCCAACGAAAATTTATAACTTTTGAAG 57.208 29.630 15.79 10.39 0.00 3.02
3342 12011 2.158755 AGCTACACCATGCACCTATTCC 60.159 50.000 0.00 0.00 0.00 3.01
3343 12012 2.421388 GCTACACCATGCACCTATTCCA 60.421 50.000 0.00 0.00 0.00 3.53
3344 12013 3.748668 GCTACACCATGCACCTATTCCAT 60.749 47.826 0.00 0.00 0.00 3.41
3345 12014 4.504864 GCTACACCATGCACCTATTCCATA 60.505 45.833 0.00 0.00 0.00 2.74
3346 12015 3.820557 ACACCATGCACCTATTCCATAC 58.179 45.455 0.00 0.00 0.00 2.39
3347 12016 3.201930 ACACCATGCACCTATTCCATACA 59.798 43.478 0.00 0.00 0.00 2.29
3348 12017 3.565482 CACCATGCACCTATTCCATACAC 59.435 47.826 0.00 0.00 0.00 2.90
3349 12018 3.149196 CCATGCACCTATTCCATACACC 58.851 50.000 0.00 0.00 0.00 4.16
3350 12019 3.434882 CCATGCACCTATTCCATACACCA 60.435 47.826 0.00 0.00 0.00 4.17
3351 12020 4.401022 CATGCACCTATTCCATACACCAT 58.599 43.478 0.00 0.00 0.00 3.55
3352 12021 4.085357 TGCACCTATTCCATACACCATC 57.915 45.455 0.00 0.00 0.00 3.51
3353 12022 3.181445 TGCACCTATTCCATACACCATCC 60.181 47.826 0.00 0.00 0.00 3.51
3354 12023 3.810743 GCACCTATTCCATACACCATCCC 60.811 52.174 0.00 0.00 0.00 3.85
3355 12024 3.652869 CACCTATTCCATACACCATCCCT 59.347 47.826 0.00 0.00 0.00 4.20
3356 12025 3.910627 ACCTATTCCATACACCATCCCTC 59.089 47.826 0.00 0.00 0.00 4.30
3357 12026 3.055819 CCTATTCCATACACCATCCCTCG 60.056 52.174 0.00 0.00 0.00 4.63
3358 12027 1.874129 TTCCATACACCATCCCTCGT 58.126 50.000 0.00 0.00 0.00 4.18
3359 12028 2.759839 TCCATACACCATCCCTCGTA 57.240 50.000 0.00 0.00 0.00 3.43
3360 12029 2.313317 TCCATACACCATCCCTCGTAC 58.687 52.381 0.00 0.00 0.00 3.67
3361 12030 2.091499 TCCATACACCATCCCTCGTACT 60.091 50.000 0.00 0.00 0.00 2.73
3362 12031 2.296471 CCATACACCATCCCTCGTACTC 59.704 54.545 0.00 0.00 0.00 2.59
3363 12032 2.062971 TACACCATCCCTCGTACTCC 57.937 55.000 0.00 0.00 0.00 3.85
3364 12033 0.040646 ACACCATCCCTCGTACTCCA 59.959 55.000 0.00 0.00 0.00 3.86
3365 12034 1.343075 ACACCATCCCTCGTACTCCAT 60.343 52.381 0.00 0.00 0.00 3.41
3366 12035 1.341531 CACCATCCCTCGTACTCCATC 59.658 57.143 0.00 0.00 0.00 3.51
3367 12036 1.218196 ACCATCCCTCGTACTCCATCT 59.782 52.381 0.00 0.00 0.00 2.90
3368 12037 1.889829 CCATCCCTCGTACTCCATCTC 59.110 57.143 0.00 0.00 0.00 2.75
3369 12038 2.489985 CCATCCCTCGTACTCCATCTCT 60.490 54.545 0.00 0.00 0.00 3.10
3370 12039 2.642154 TCCCTCGTACTCCATCTCTC 57.358 55.000 0.00 0.00 0.00 3.20
3371 12040 2.128535 TCCCTCGTACTCCATCTCTCT 58.871 52.381 0.00 0.00 0.00 3.10
3372 12041 2.510382 TCCCTCGTACTCCATCTCTCTT 59.490 50.000 0.00 0.00 0.00 2.85
3373 12042 3.053544 TCCCTCGTACTCCATCTCTCTTT 60.054 47.826 0.00 0.00 0.00 2.52
3374 12043 3.702045 CCCTCGTACTCCATCTCTCTTTT 59.298 47.826 0.00 0.00 0.00 2.27
3375 12044 4.888239 CCCTCGTACTCCATCTCTCTTTTA 59.112 45.833 0.00 0.00 0.00 1.52
3376 12045 5.360144 CCCTCGTACTCCATCTCTCTTTTAA 59.640 44.000 0.00 0.00 0.00 1.52
3377 12046 6.127423 CCCTCGTACTCCATCTCTCTTTTAAA 60.127 42.308 0.00 0.00 0.00 1.52
3378 12047 7.418025 CCCTCGTACTCCATCTCTCTTTTAAAT 60.418 40.741 0.00 0.00 0.00 1.40
3379 12048 7.982354 CCTCGTACTCCATCTCTCTTTTAAATT 59.018 37.037 0.00 0.00 0.00 1.82
3380 12049 9.372369 CTCGTACTCCATCTCTCTTTTAAATTT 57.628 33.333 0.00 0.00 0.00 1.82
3381 12050 9.720769 TCGTACTCCATCTCTCTTTTAAATTTT 57.279 29.630 0.00 0.00 0.00 1.82
3382 12051 9.974750 CGTACTCCATCTCTCTTTTAAATTTTC 57.025 33.333 0.00 0.00 0.00 2.29
3503 12184 9.631452 GAATTAAAAGAAAGGGAATGACAAGAG 57.369 33.333 0.00 0.00 0.00 2.85
3560 12241 6.561519 AGCACCAAACCATAGAGTACTTAT 57.438 37.500 0.00 0.00 0.00 1.73
3561 12242 7.670605 AGCACCAAACCATAGAGTACTTATA 57.329 36.000 0.00 0.00 0.00 0.98
3582 12263 0.888619 CACGGGTGCTACAGAGAGAA 59.111 55.000 0.00 0.00 0.00 2.87
3607 12288 8.647143 AATGTTTTTATATCCCGCATTGAAAG 57.353 30.769 0.00 0.00 0.00 2.62
3608 12289 6.039616 TGTTTTTATATCCCGCATTGAAAGC 58.960 36.000 0.00 0.00 0.00 3.51
3609 12290 6.127479 TGTTTTTATATCCCGCATTGAAAGCT 60.127 34.615 0.00 0.00 0.00 3.74
3658 12432 8.902540 ACACTTCTTAGAATTACATGAACACA 57.097 30.769 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 3325 7.499321 TTTAACAATCAACGGTGTGAGTTAT 57.501 32.000 0.00 0.00 0.00 1.89
500 3834 3.126453 AGGGGCATTTAGAAGGATGACT 58.874 45.455 0.00 0.00 31.81 3.41
501 3835 3.584733 AGGGGCATTTAGAAGGATGAC 57.415 47.619 0.00 0.00 0.00 3.06
502 3836 3.788142 AGAAGGGGCATTTAGAAGGATGA 59.212 43.478 0.00 0.00 0.00 2.92
508 3842 2.025321 GGTGGAGAAGGGGCATTTAGAA 60.025 50.000 0.00 0.00 0.00 2.10
510 3844 1.410224 GGGTGGAGAAGGGGCATTTAG 60.410 57.143 0.00 0.00 0.00 1.85
533 3867 3.995506 GAAGGATGGTGGGCGGTGG 62.996 68.421 0.00 0.00 0.00 4.61
534 3868 2.438434 GAAGGATGGTGGGCGGTG 60.438 66.667 0.00 0.00 0.00 4.94
535 3869 3.728373 GGAAGGATGGTGGGCGGT 61.728 66.667 0.00 0.00 0.00 5.68
536 3870 3.411517 AGGAAGGATGGTGGGCGG 61.412 66.667 0.00 0.00 0.00 6.13
537 3871 2.124570 CAGGAAGGATGGTGGGCG 60.125 66.667 0.00 0.00 0.00 6.13
538 3872 2.276740 CCAGGAAGGATGGTGGGC 59.723 66.667 0.00 0.00 41.22 5.36
542 3876 2.971598 CGGTGCCAGGAAGGATGGT 61.972 63.158 0.00 0.00 41.22 3.55
545 3879 2.615227 GATGCGGTGCCAGGAAGGAT 62.615 60.000 0.00 0.00 41.22 3.24
546 3880 3.329542 GATGCGGTGCCAGGAAGGA 62.330 63.158 0.00 0.00 41.22 3.36
553 3887 1.153188 CAGGTATGATGCGGTGCCA 60.153 57.895 0.00 0.00 0.00 4.92
677 4363 7.121315 ACAAGGCCATTTAGTGATTTTAGTCTC 59.879 37.037 5.01 0.00 0.00 3.36
739 4427 5.680619 TGTCCATATAACTAAACCTGGCAG 58.319 41.667 7.75 7.75 0.00 4.85
763 4451 1.451927 CTTCTGGCCGGCTGCATAA 60.452 57.895 28.56 14.24 43.89 1.90
898 4593 5.211174 ACGTTCTTATATAGGCAAGGGAC 57.789 43.478 0.00 0.00 0.00 4.46
945 4640 1.671054 CGGGTAGTGCTTGGTGGTG 60.671 63.158 0.00 0.00 0.00 4.17
946 4641 2.747686 CGGGTAGTGCTTGGTGGT 59.252 61.111 0.00 0.00 0.00 4.16
947 4642 2.046314 CCGGGTAGTGCTTGGTGG 60.046 66.667 0.00 0.00 0.00 4.61
958 4662 2.192443 CTCTCCTCTCGCCGGGTA 59.808 66.667 2.18 0.00 0.00 3.69
1011 4730 1.068417 CCCGGTCAACGTCTTCACA 59.932 57.895 0.00 0.00 42.24 3.58
1021 4740 1.606994 CGTGATTGTCTTCCCGGTCAA 60.607 52.381 0.00 0.00 0.00 3.18
1035 4754 1.251527 ACTCCACCTCGAGCGTGATT 61.252 55.000 26.08 12.73 32.77 2.57
1126 4851 3.118482 GGAAGAGATGGCTCAGTGATTCA 60.118 47.826 0.00 0.00 43.81 2.57
1136 4868 2.428890 CAAGTAGACGGAAGAGATGGCT 59.571 50.000 0.00 0.00 0.00 4.75
1170 4907 1.503542 GCAACGCTGGTGAAGATGG 59.496 57.895 0.00 0.00 0.00 3.51
1254 4996 1.298953 AGTGAGGTGCCCATGGTAAT 58.701 50.000 11.73 0.00 0.00 1.89
1256 4998 0.327924 CAAGTGAGGTGCCCATGGTA 59.672 55.000 11.73 0.00 0.00 3.25
1263 5005 2.380084 TATTCGACAAGTGAGGTGCC 57.620 50.000 0.00 0.00 0.00 5.01
1318 5060 1.153086 CATGGAGGGTGCTGGCTAC 60.153 63.158 0.00 0.00 0.00 3.58
1352 5095 6.647334 ATCTGCTCTATTTCAGATCGAGAA 57.353 37.500 0.00 0.26 44.23 2.87
1381 5156 2.100605 ACCTCGGATGAGCAGAAAAC 57.899 50.000 0.00 0.00 41.13 2.43
1391 5166 5.753921 GTCCAAAACTATCTAACCTCGGATG 59.246 44.000 0.00 0.00 0.00 3.51
1416 5191 1.071436 GTCGACGCACAAGAAACAGAC 60.071 52.381 0.00 0.00 0.00 3.51
1417 5192 1.205657 GTCGACGCACAAGAAACAGA 58.794 50.000 0.00 0.00 0.00 3.41
1418 5193 0.232303 GGTCGACGCACAAGAAACAG 59.768 55.000 9.92 0.00 0.00 3.16
1419 5194 0.179094 AGGTCGACGCACAAGAAACA 60.179 50.000 9.92 0.00 0.00 2.83
1420 5195 0.935196 AAGGTCGACGCACAAGAAAC 59.065 50.000 9.92 0.00 0.00 2.78
1421 5196 0.934496 CAAGGTCGACGCACAAGAAA 59.066 50.000 9.92 0.00 0.00 2.52
1424 5199 2.551270 GCAAGGTCGACGCACAAG 59.449 61.111 9.92 0.00 0.00 3.16
1425 5200 3.334751 CGCAAGGTCGACGCACAA 61.335 61.111 9.92 0.00 0.00 3.33
1467 5261 3.935828 GGGAGTGCTAAACATGAGTTCTC 59.064 47.826 0.00 0.00 36.84 2.87
1468 5262 3.617531 CGGGAGTGCTAAACATGAGTTCT 60.618 47.826 0.00 0.00 36.84 3.01
1469 5263 2.673368 CGGGAGTGCTAAACATGAGTTC 59.327 50.000 0.00 0.00 36.84 3.01
1473 5267 2.614481 GGAACGGGAGTGCTAAACATGA 60.614 50.000 0.00 0.00 46.69 3.07
1497 5291 5.662208 TGTTAATTGATTACTACTCCCGGGA 59.338 40.000 25.06 25.06 0.00 5.14
1898 9440 1.064463 AGGCACCGATCCATGAAACAT 60.064 47.619 0.00 0.00 0.00 2.71
1951 9499 9.952030 TCTACACATACATAATCTCCACAAAAA 57.048 29.630 0.00 0.00 0.00 1.94
1989 9539 5.105756 GCTAGTTGCCTGGATTAAACAACAT 60.106 40.000 12.87 3.92 42.32 2.71
2002 9552 3.127548 ACGAAAATCATGCTAGTTGCCTG 59.872 43.478 0.00 0.00 42.00 4.85
2017 9567 6.992063 ATCTCAGCAAGATGTAACGAAAAT 57.008 33.333 1.16 0.00 43.35 1.82
2040 9590 6.040278 TCTGTTTGGCAATTCAAATCTACACA 59.960 34.615 0.00 0.00 38.64 3.72
2099 9662 9.081997 CAATATATAACCGCAAAGCAAAGAAAA 57.918 29.630 0.00 0.00 0.00 2.29
2160 9723 5.945191 TGTTCACAGAAATCAGCCATTATCA 59.055 36.000 0.00 0.00 0.00 2.15
2456 10988 3.601443 ACAGATGTGTTAGCCTCTGTC 57.399 47.619 0.00 0.00 43.60 3.51
2511 11045 6.679327 AAAGATTAAGGCCGAACAAGATAC 57.321 37.500 0.00 0.00 0.00 2.24
2538 11073 6.971527 AAACATGCAATTGTGACATATTGG 57.028 33.333 7.40 7.55 33.41 3.16
2550 11085 4.216257 ACAGCGAACTCTAAACATGCAATT 59.784 37.500 0.00 0.00 0.00 2.32
2559 11094 4.829064 ATTTTGCACAGCGAACTCTAAA 57.171 36.364 0.00 0.00 30.99 1.85
2568 11103 7.186128 TCTACATGTAATTATTTTGCACAGCG 58.814 34.615 7.06 0.00 0.00 5.18
2569 11104 8.961092 CATCTACATGTAATTATTTTGCACAGC 58.039 33.333 7.06 0.00 0.00 4.40
2634 11230 7.775561 AGCTGAAAGAGAAGGTAAGAAAAGAAA 59.224 33.333 0.00 0.00 34.07 2.52
2635 11231 7.283329 AGCTGAAAGAGAAGGTAAGAAAAGAA 58.717 34.615 0.00 0.00 34.07 2.52
2636 11232 6.831976 AGCTGAAAGAGAAGGTAAGAAAAGA 58.168 36.000 0.00 0.00 34.07 2.52
2637 11233 8.608844 TTAGCTGAAAGAGAAGGTAAGAAAAG 57.391 34.615 0.00 0.00 34.07 2.27
2734 11347 3.650942 TCCAACACTCCAAACTAGGACAT 59.349 43.478 0.00 0.00 33.19 3.06
2747 11360 5.125100 TGATTCAGCAAAATCCAACACTC 57.875 39.130 8.17 0.00 35.23 3.51
2769 11385 7.499563 ACTCCAATATATATGACGACGCTAGAT 59.500 37.037 0.00 0.00 0.00 1.98
2872 11500 8.506168 AGAACTCACTCAAAATAAACAACTCA 57.494 30.769 0.00 0.00 0.00 3.41
2882 11510 9.525826 AATCCAAGATAAGAACTCACTCAAAAT 57.474 29.630 0.00 0.00 0.00 1.82
2886 11514 6.372659 GCAAATCCAAGATAAGAACTCACTCA 59.627 38.462 0.00 0.00 0.00 3.41
2887 11515 6.597280 AGCAAATCCAAGATAAGAACTCACTC 59.403 38.462 0.00 0.00 0.00 3.51
2888 11516 6.479884 AGCAAATCCAAGATAAGAACTCACT 58.520 36.000 0.00 0.00 0.00 3.41
2889 11517 6.749923 AGCAAATCCAAGATAAGAACTCAC 57.250 37.500 0.00 0.00 0.00 3.51
2891 11519 9.943163 GATTAAGCAAATCCAAGATAAGAACTC 57.057 33.333 1.37 0.00 38.47 3.01
2892 11520 9.466497 TGATTAAGCAAATCCAAGATAAGAACT 57.534 29.630 8.76 0.00 42.97 3.01
2895 11523 9.241919 TGTTGATTAAGCAAATCCAAGATAAGA 57.758 29.630 7.89 0.00 42.97 2.10
2896 11524 9.859427 TTGTTGATTAAGCAAATCCAAGATAAG 57.141 29.630 7.89 0.00 42.97 1.73
2897 11525 9.859427 CTTGTTGATTAAGCAAATCCAAGATAA 57.141 29.630 21.54 0.00 41.56 1.75
2898 11526 9.241919 TCTTGTTGATTAAGCAAATCCAAGATA 57.758 29.630 23.33 10.89 42.14 1.98
2899 11527 8.125978 TCTTGTTGATTAAGCAAATCCAAGAT 57.874 30.769 23.33 0.00 42.14 2.40
2900 11528 7.523293 TCTTGTTGATTAAGCAAATCCAAGA 57.477 32.000 23.33 23.33 43.32 3.02
2901 11529 8.592105 TTTCTTGTTGATTAAGCAAATCCAAG 57.408 30.769 20.67 20.67 42.97 3.61
2902 11530 8.954950 TTTTCTTGTTGATTAAGCAAATCCAA 57.045 26.923 7.89 7.64 42.97 3.53
2903 11531 8.954950 TTTTTCTTGTTGATTAAGCAAATCCA 57.045 26.923 7.89 0.00 42.97 3.41
2945 11573 3.120199 CGTTTGATTCTGTGCGGAGATTT 60.120 43.478 0.00 0.00 0.00 2.17
2957 11585 5.184096 TGACTAGCTCTCTTCGTTTGATTCT 59.816 40.000 0.00 0.00 0.00 2.40
2958 11586 5.287513 GTGACTAGCTCTCTTCGTTTGATTC 59.712 44.000 0.00 0.00 0.00 2.52
2966 11594 1.133407 GGGTGTGACTAGCTCTCTTCG 59.867 57.143 0.00 0.00 0.00 3.79
3001 11636 8.912988 CATAGTAAATATTTCCCAAGCCAAAGA 58.087 33.333 3.39 0.00 0.00 2.52
3002 11637 8.695456 ACATAGTAAATATTTCCCAAGCCAAAG 58.305 33.333 3.39 0.00 0.00 2.77
3003 11638 8.602472 ACATAGTAAATATTTCCCAAGCCAAA 57.398 30.769 3.39 0.00 0.00 3.28
3004 11639 8.474025 CAACATAGTAAATATTTCCCAAGCCAA 58.526 33.333 3.39 0.00 0.00 4.52
3005 11640 7.617723 ACAACATAGTAAATATTTCCCAAGCCA 59.382 33.333 3.39 0.00 0.00 4.75
3006 11641 7.920682 CACAACATAGTAAATATTTCCCAAGCC 59.079 37.037 3.39 0.00 0.00 4.35
3007 11642 8.466798 ACACAACATAGTAAATATTTCCCAAGC 58.533 33.333 3.39 0.00 0.00 4.01
3064 11701 1.477295 GCTCGTATATCCTAGTGGGCC 59.523 57.143 0.00 0.00 34.39 5.80
3091 11728 2.791383 TTCCCTCGTTGCAATGTTTG 57.209 45.000 17.94 9.63 0.00 2.93
3092 11729 3.810310 TTTTCCCTCGTTGCAATGTTT 57.190 38.095 17.94 0.00 0.00 2.83
3093 11730 3.810310 TTTTTCCCTCGTTGCAATGTT 57.190 38.095 17.94 0.00 0.00 2.71
3110 11747 2.223572 GCGCTAGGTGCATGCTATTTTT 60.224 45.455 20.33 1.33 43.06 1.94
3111 11748 1.334869 GCGCTAGGTGCATGCTATTTT 59.665 47.619 20.33 2.77 43.06 1.82
3112 11749 0.947244 GCGCTAGGTGCATGCTATTT 59.053 50.000 20.33 4.59 43.06 1.40
3113 11750 0.179048 TGCGCTAGGTGCATGCTATT 60.179 50.000 20.33 6.44 44.36 1.73
3114 11751 1.447217 TGCGCTAGGTGCATGCTAT 59.553 52.632 20.33 7.17 44.36 2.97
3115 11752 2.899505 TGCGCTAGGTGCATGCTA 59.100 55.556 20.33 1.79 44.36 3.49
3121 11758 2.541588 CCATGTTTATTGCGCTAGGTGC 60.542 50.000 9.73 0.00 39.75 5.01
3122 11759 2.541588 GCCATGTTTATTGCGCTAGGTG 60.542 50.000 9.73 0.00 0.00 4.00
3123 11760 1.676006 GCCATGTTTATTGCGCTAGGT 59.324 47.619 9.73 0.00 0.00 3.08
3124 11761 1.949525 AGCCATGTTTATTGCGCTAGG 59.050 47.619 9.73 0.00 30.68 3.02
3125 11762 2.613595 TGAGCCATGTTTATTGCGCTAG 59.386 45.455 9.73 0.00 30.68 3.42
3126 11763 2.637947 TGAGCCATGTTTATTGCGCTA 58.362 42.857 9.73 0.00 30.68 4.26
3127 11764 1.462616 TGAGCCATGTTTATTGCGCT 58.537 45.000 9.73 0.00 30.68 5.92
3128 11765 1.919918 GTTGAGCCATGTTTATTGCGC 59.080 47.619 0.00 0.00 30.68 6.09
3129 11766 2.529151 GGTTGAGCCATGTTTATTGCG 58.471 47.619 0.00 0.00 37.17 4.85
3130 11767 2.418609 GGGGTTGAGCCATGTTTATTGC 60.419 50.000 1.23 0.00 39.65 3.56
3131 11768 3.099141 AGGGGTTGAGCCATGTTTATTG 58.901 45.455 1.23 0.00 39.65 1.90
3132 11769 3.365472 GAGGGGTTGAGCCATGTTTATT 58.635 45.455 1.23 0.00 39.65 1.40
3133 11770 2.358195 GGAGGGGTTGAGCCATGTTTAT 60.358 50.000 1.23 0.00 39.65 1.40
3134 11771 1.005450 GGAGGGGTTGAGCCATGTTTA 59.995 52.381 1.23 0.00 39.65 2.01
3135 11772 0.251787 GGAGGGGTTGAGCCATGTTT 60.252 55.000 1.23 0.00 39.65 2.83
3136 11773 1.384191 GGAGGGGTTGAGCCATGTT 59.616 57.895 1.23 0.00 39.65 2.71
3137 11774 1.852157 TGGAGGGGTTGAGCCATGT 60.852 57.895 1.23 0.00 39.65 3.21
3138 11775 1.379044 GTGGAGGGGTTGAGCCATG 60.379 63.158 1.23 0.00 39.65 3.66
3139 11776 2.971598 CGTGGAGGGGTTGAGCCAT 61.972 63.158 1.23 0.00 39.65 4.40
3140 11777 3.636231 CGTGGAGGGGTTGAGCCA 61.636 66.667 1.23 0.00 39.65 4.75
3141 11778 4.410400 CCGTGGAGGGGTTGAGCC 62.410 72.222 0.00 0.00 35.97 4.70
3150 11787 0.960364 CAAACATGGACCCGTGGAGG 60.960 60.000 12.43 0.00 37.27 4.30
3151 11788 1.586154 GCAAACATGGACCCGTGGAG 61.586 60.000 12.43 3.55 37.27 3.86
3152 11789 1.602323 GCAAACATGGACCCGTGGA 60.602 57.895 12.43 0.00 37.27 4.02
3153 11790 2.635443 GGCAAACATGGACCCGTGG 61.635 63.158 12.43 0.00 37.27 4.94
3154 11791 2.635443 GGGCAAACATGGACCCGTG 61.635 63.158 6.71 6.71 38.78 4.94
3155 11792 2.282887 GGGCAAACATGGACCCGT 60.283 61.111 0.00 0.00 31.32 5.28
3156 11793 3.068064 GGGGCAAACATGGACCCG 61.068 66.667 0.00 0.00 43.82 5.28
3157 11794 1.682344 GAGGGGCAAACATGGACCC 60.682 63.158 3.17 3.17 42.01 4.46
3158 11795 1.682344 GGAGGGGCAAACATGGACC 60.682 63.158 0.00 0.00 0.00 4.46
3159 11796 1.076549 TGGAGGGGCAAACATGGAC 59.923 57.895 0.00 0.00 0.00 4.02
3160 11797 1.076549 GTGGAGGGGCAAACATGGA 59.923 57.895 0.00 0.00 0.00 3.41
3161 11798 0.542702 AAGTGGAGGGGCAAACATGG 60.543 55.000 0.00 0.00 0.00 3.66
3162 11799 0.890683 GAAGTGGAGGGGCAAACATG 59.109 55.000 0.00 0.00 0.00 3.21
3163 11800 0.779997 AGAAGTGGAGGGGCAAACAT 59.220 50.000 0.00 0.00 0.00 2.71
3164 11801 0.178992 CAGAAGTGGAGGGGCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
3165 11802 0.178990 ACAGAAGTGGAGGGGCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
3166 11803 0.178992 CACAGAAGTGGAGGGGCAAA 60.179 55.000 0.00 0.00 42.13 3.68
3167 11804 1.455849 CACAGAAGTGGAGGGGCAA 59.544 57.895 0.00 0.00 42.13 4.52
3168 11805 3.160585 CACAGAAGTGGAGGGGCA 58.839 61.111 0.00 0.00 42.13 5.36
3176 11813 3.926616 AGGATAAACGTCCACAGAAGTG 58.073 45.455 0.00 0.00 45.47 3.16
3177 11814 4.283722 AGAAGGATAAACGTCCACAGAAGT 59.716 41.667 0.00 0.00 40.90 3.01
3178 11815 4.822026 AGAAGGATAAACGTCCACAGAAG 58.178 43.478 0.00 0.00 40.90 2.85
3179 11816 4.884668 AGAAGGATAAACGTCCACAGAA 57.115 40.909 0.00 0.00 40.90 3.02
3180 11817 4.884668 AAGAAGGATAAACGTCCACAGA 57.115 40.909 0.00 0.00 40.90 3.41
3181 11818 5.389516 CGAAAAGAAGGATAAACGTCCACAG 60.390 44.000 0.00 0.00 40.90 3.66
3182 11819 4.449743 CGAAAAGAAGGATAAACGTCCACA 59.550 41.667 0.00 0.00 40.90 4.17
3183 11820 4.668431 GCGAAAAGAAGGATAAACGTCCAC 60.668 45.833 0.00 0.00 40.90 4.02
3184 11821 3.434299 GCGAAAAGAAGGATAAACGTCCA 59.566 43.478 0.00 0.00 40.90 4.02
3185 11822 3.181513 GGCGAAAAGAAGGATAAACGTCC 60.182 47.826 0.00 0.00 38.62 4.79
3186 11823 3.181513 GGGCGAAAAGAAGGATAAACGTC 60.182 47.826 0.00 0.00 0.00 4.34
3187 11824 2.745821 GGGCGAAAAGAAGGATAAACGT 59.254 45.455 0.00 0.00 0.00 3.99
3188 11825 3.007635 AGGGCGAAAAGAAGGATAAACG 58.992 45.455 0.00 0.00 0.00 3.60
3189 11826 4.007659 TGAGGGCGAAAAGAAGGATAAAC 58.992 43.478 0.00 0.00 0.00 2.01
3190 11827 4.007659 GTGAGGGCGAAAAGAAGGATAAA 58.992 43.478 0.00 0.00 0.00 1.40
3191 11828 3.606687 GTGAGGGCGAAAAGAAGGATAA 58.393 45.455 0.00 0.00 0.00 1.75
3192 11829 2.093128 GGTGAGGGCGAAAAGAAGGATA 60.093 50.000 0.00 0.00 0.00 2.59
3193 11830 1.340114 GGTGAGGGCGAAAAGAAGGAT 60.340 52.381 0.00 0.00 0.00 3.24
3194 11831 0.036306 GGTGAGGGCGAAAAGAAGGA 59.964 55.000 0.00 0.00 0.00 3.36
3195 11832 0.036875 AGGTGAGGGCGAAAAGAAGG 59.963 55.000 0.00 0.00 0.00 3.46
3196 11833 1.160137 CAGGTGAGGGCGAAAAGAAG 58.840 55.000 0.00 0.00 0.00 2.85
3197 11834 0.250727 CCAGGTGAGGGCGAAAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
3198 11835 1.374947 CCAGGTGAGGGCGAAAAGA 59.625 57.895 0.00 0.00 0.00 2.52
3199 11836 1.675641 CCCAGGTGAGGGCGAAAAG 60.676 63.158 0.00 0.00 43.10 2.27
3200 11837 2.434331 CCCAGGTGAGGGCGAAAA 59.566 61.111 0.00 0.00 43.10 2.29
3207 11844 2.667418 CAGTCTGCCCAGGTGAGG 59.333 66.667 0.00 0.00 0.00 3.86
3208 11845 2.046507 GCAGTCTGCCCAGGTGAG 60.047 66.667 14.27 0.00 37.42 3.51
3217 11854 2.926778 AGATTAGATGGGCAGTCTGC 57.073 50.000 16.93 16.93 44.08 4.26
3218 11855 5.936956 GGATTAAGATTAGATGGGCAGTCTG 59.063 44.000 0.00 0.00 0.00 3.51
3219 11856 5.013599 GGGATTAAGATTAGATGGGCAGTCT 59.986 44.000 0.00 0.00 0.00 3.24
3220 11857 5.221925 TGGGATTAAGATTAGATGGGCAGTC 60.222 44.000 0.00 0.00 0.00 3.51
3221 11858 4.665009 TGGGATTAAGATTAGATGGGCAGT 59.335 41.667 0.00 0.00 0.00 4.40
3222 11859 5.246981 TGGGATTAAGATTAGATGGGCAG 57.753 43.478 0.00 0.00 0.00 4.85
3223 11860 5.458069 CCTTGGGATTAAGATTAGATGGGCA 60.458 44.000 0.00 0.00 0.00 5.36
3224 11861 5.012893 CCTTGGGATTAAGATTAGATGGGC 58.987 45.833 0.00 0.00 0.00 5.36
3225 11862 6.454223 TCCTTGGGATTAAGATTAGATGGG 57.546 41.667 0.00 0.00 0.00 4.00
3226 11863 7.926705 AGATCCTTGGGATTAAGATTAGATGG 58.073 38.462 0.33 0.00 43.27 3.51
3227 11864 9.228949 CAAGATCCTTGGGATTAAGATTAGATG 57.771 37.037 0.33 0.00 43.27 2.90
3228 11865 8.389366 CCAAGATCCTTGGGATTAAGATTAGAT 58.611 37.037 15.96 0.00 43.27 1.98
3229 11866 7.692789 GCCAAGATCCTTGGGATTAAGATTAGA 60.693 40.741 22.71 0.00 43.27 2.10
3230 11867 6.432472 GCCAAGATCCTTGGGATTAAGATTAG 59.568 42.308 22.71 0.00 43.27 1.73
3231 11868 6.306987 GCCAAGATCCTTGGGATTAAGATTA 58.693 40.000 22.71 0.00 43.27 1.75
3232 11869 5.143369 GCCAAGATCCTTGGGATTAAGATT 58.857 41.667 22.71 0.00 43.27 2.40
3233 11870 4.448347 GGCCAAGATCCTTGGGATTAAGAT 60.448 45.833 22.71 0.00 43.27 2.40
3234 11871 3.117512 GGCCAAGATCCTTGGGATTAAGA 60.118 47.826 22.71 0.00 43.27 2.10
3235 11872 3.225940 GGCCAAGATCCTTGGGATTAAG 58.774 50.000 22.71 1.42 43.27 1.85
3236 11873 2.584965 TGGCCAAGATCCTTGGGATTAA 59.415 45.455 22.71 0.00 43.27 1.40
3237 11874 2.091885 GTGGCCAAGATCCTTGGGATTA 60.092 50.000 22.71 0.00 43.27 1.75
3238 11875 1.009997 TGGCCAAGATCCTTGGGATT 58.990 50.000 22.71 0.00 43.27 3.01
3239 11876 0.259938 GTGGCCAAGATCCTTGGGAT 59.740 55.000 22.71 0.00 46.28 3.85
3240 11877 1.691219 GTGGCCAAGATCCTTGGGA 59.309 57.895 22.71 0.00 39.90 4.37
3241 11878 1.380380 GGTGGCCAAGATCCTTGGG 60.380 63.158 22.71 8.67 39.90 4.12
3242 11879 1.750399 CGGTGGCCAAGATCCTTGG 60.750 63.158 7.24 18.66 42.37 3.61
3246 11883 2.825836 CTGCGGTGGCCAAGATCC 60.826 66.667 7.24 2.76 38.85 3.36
3265 11920 0.109689 TAAATTTTCGTTGGCGCGGG 60.110 50.000 8.83 0.00 38.14 6.13
3270 11925 9.791838 CTTCAAAAGTTATAAATTTTCGTTGGC 57.208 29.630 18.08 0.00 34.39 4.52
3285 11940 6.303839 ACCCTCATGTAAGCTTCAAAAGTTA 58.696 36.000 0.00 0.00 0.00 2.24
3286 11941 5.140454 ACCCTCATGTAAGCTTCAAAAGTT 58.860 37.500 0.00 0.00 0.00 2.66
3293 11948 1.745653 GCCAACCCTCATGTAAGCTTC 59.254 52.381 0.00 0.00 0.00 3.86
3296 11951 0.034089 AGGCCAACCCTCATGTAAGC 60.034 55.000 5.01 0.00 41.21 3.09
3342 12011 2.296471 GGAGTACGAGGGATGGTGTATG 59.704 54.545 0.00 0.00 0.00 2.39
3343 12012 2.091499 TGGAGTACGAGGGATGGTGTAT 60.091 50.000 0.00 0.00 0.00 2.29
3344 12013 1.285667 TGGAGTACGAGGGATGGTGTA 59.714 52.381 0.00 0.00 0.00 2.90
3345 12014 0.040646 TGGAGTACGAGGGATGGTGT 59.959 55.000 0.00 0.00 0.00 4.16
3346 12015 1.341531 GATGGAGTACGAGGGATGGTG 59.658 57.143 0.00 0.00 0.00 4.17
3347 12016 1.218196 AGATGGAGTACGAGGGATGGT 59.782 52.381 0.00 0.00 0.00 3.55
3348 12017 1.889829 GAGATGGAGTACGAGGGATGG 59.110 57.143 0.00 0.00 0.00 3.51
3349 12018 2.817258 GAGAGATGGAGTACGAGGGATG 59.183 54.545 0.00 0.00 0.00 3.51
3350 12019 2.714250 AGAGAGATGGAGTACGAGGGAT 59.286 50.000 0.00 0.00 0.00 3.85
3351 12020 2.128535 AGAGAGATGGAGTACGAGGGA 58.871 52.381 0.00 0.00 0.00 4.20
3352 12021 2.649531 AGAGAGATGGAGTACGAGGG 57.350 55.000 0.00 0.00 0.00 4.30
3353 12022 4.993029 AAAAGAGAGATGGAGTACGAGG 57.007 45.455 0.00 0.00 0.00 4.63
3354 12023 8.934507 AATTTAAAAGAGAGATGGAGTACGAG 57.065 34.615 0.00 0.00 0.00 4.18
3355 12024 9.720769 AAAATTTAAAAGAGAGATGGAGTACGA 57.279 29.630 0.00 0.00 0.00 3.43
3356 12025 9.974750 GAAAATTTAAAAGAGAGATGGAGTACG 57.025 33.333 0.00 0.00 0.00 3.67
3447 12116 7.895144 ATTATGGGAGGGATAGATTTCTTCA 57.105 36.000 0.00 0.00 0.00 3.02
3486 12158 5.699458 TCGTTTACTCTTGTCATTCCCTTTC 59.301 40.000 0.00 0.00 0.00 2.62
3582 12263 7.224557 GCTTTCAATGCGGGATATAAAAACATT 59.775 33.333 0.00 0.00 0.00 2.71
3607 12288 8.401046 TCATGTGTTAAAAACTGTTTGTAAGC 57.599 30.769 14.57 11.48 0.00 3.09
3609 12290 9.692749 TGTTCATGTGTTAAAAACTGTTTGTAA 57.307 25.926 11.01 11.01 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.