Multiple sequence alignment - TraesCS2D01G458400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G458400 chr2D 100.000 3302 0 0 1 3302 565402827 565406128 0.000000e+00 6098.0
1 TraesCS2D01G458400 chr2B 90.594 2626 158 37 300 2895 677355006 677357572 0.000000e+00 3398.0
2 TraesCS2D01G458400 chr2B 93.462 413 21 5 2892 3301 677357701 677358110 2.820000e-170 608.0
3 TraesCS2D01G458400 chr2B 91.362 301 19 3 953 1252 675206456 675206750 3.970000e-109 405.0
4 TraesCS2D01G458400 chr2B 89.216 306 29 3 1 303 675199385 675199689 2.400000e-101 379.0
5 TraesCS2D01G458400 chr2B 88.846 260 18 8 1 256 677354639 677354891 3.200000e-80 309.0
6 TraesCS2D01G458400 chr2B 90.233 215 16 3 422 631 675199891 675200105 3.250000e-70 276.0
7 TraesCS2D01G458400 chr2B 90.541 74 7 0 1664 1737 677356272 677356345 7.540000e-17 99.0
8 TraesCS2D01G458400 chr2A 92.704 1960 85 15 429 2366 705846537 705848460 0.000000e+00 2774.0
9 TraesCS2D01G458400 chr2A 93.243 74 5 0 1664 1737 705847718 705847791 3.480000e-20 110.0
10 TraesCS2D01G458400 chr2A 93.243 74 5 0 1592 1665 705847790 705847863 3.480000e-20 110.0
11 TraesCS2D01G458400 chr2A 100.000 39 0 0 2410 2448 705848477 705848515 4.570000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G458400 chr2D 565402827 565406128 3301 False 6098.000 6098 100.00000 1 3302 1 chr2D.!!$F1 3301
1 TraesCS2D01G458400 chr2B 677354639 677358110 3471 False 1103.500 3398 90.86075 1 3301 4 chr2B.!!$F3 3300
2 TraesCS2D01G458400 chr2B 675199385 675200105 720 False 327.500 379 89.72450 1 631 2 chr2B.!!$F2 630
3 TraesCS2D01G458400 chr2A 705846537 705848515 1978 False 766.775 2774 94.79750 429 2448 4 chr2A.!!$F1 2019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 282 0.738389 AGTTGTTTTGTGGTGGCTCG 59.262 50.0 0.0 0.0 0.00 5.03 F
1715 1883 0.593773 CCGGCGACAACAAACTTTGG 60.594 55.0 9.3 0.0 34.12 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 2125 0.745845 GGTGGGTAGCTGCTGATGTG 60.746 60.0 13.43 0.0 0.0 3.21 R
2802 2988 0.029300 CCTGCACTTGTTGTTGTCGG 59.971 55.0 0.00 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.616628 GAGGCTCAAAGGAGGGGGA 60.617 63.158 10.25 0.00 41.67 4.81
101 102 2.958355 GGTGGGACATTGTATCATTGGG 59.042 50.000 0.00 0.00 44.52 4.12
103 104 2.091389 TGGGACATTGTATCATTGGGGG 60.091 50.000 0.00 0.00 0.00 5.40
154 157 2.806818 GACTCGTTCCCCTTCAAAGAAC 59.193 50.000 0.00 0.00 37.20 3.01
173 177 9.678941 CAAAGAACTAAATTTGGACTAACCTTC 57.321 33.333 8.72 0.21 39.86 3.46
178 182 7.222161 ACTAAATTTGGACTAACCTTCGTCTT 58.778 34.615 8.72 0.00 39.86 3.01
241 245 7.172703 GTGCTTAGTTATCTAGTTTGGTGTTGT 59.827 37.037 0.00 0.00 0.00 3.32
264 268 4.398358 TCGTATGTCTTGCTAGCTAGTTGT 59.602 41.667 22.75 13.28 0.00 3.32
274 278 3.058224 GCTAGCTAGTTGTTTTGTGGTGG 60.058 47.826 21.62 0.00 0.00 4.61
278 282 0.738389 AGTTGTTTTGTGGTGGCTCG 59.262 50.000 0.00 0.00 0.00 5.03
294 298 2.253603 GCTCGTCCAATTGCACATTTC 58.746 47.619 0.00 0.00 0.00 2.17
365 483 1.673033 CGATCGCATATTCACCCTCCC 60.673 57.143 0.26 0.00 0.00 4.30
371 489 2.126882 CATATTCACCCTCCCTGTGGA 58.873 52.381 0.00 0.00 38.75 4.02
408 529 2.301583 GGAGATACCCCTGATCTCTTGC 59.698 54.545 11.35 0.00 45.82 4.01
415 536 1.209990 CCCTGATCTCTTGCTGCTTCT 59.790 52.381 0.00 0.00 0.00 2.85
436 557 6.519353 TCTACGACAACAACACATACTTTG 57.481 37.500 0.00 0.00 0.00 2.77
527 678 4.109050 GGACATCAAAGCGTGAACAAAAA 58.891 39.130 0.00 0.00 40.50 1.94
622 779 1.153005 GGGAGAGGAATGGCAGCTG 60.153 63.158 10.11 10.11 0.00 4.24
636 793 1.882912 CAGCTGTCACAACAAGGCTA 58.117 50.000 5.25 0.00 35.40 3.93
666 823 2.037902 GAGGCTTCCTTGGGTAGATAGC 59.962 54.545 0.00 0.00 31.76 2.97
693 852 5.279156 GGCCATAGAATAAATTTGCCCTCTG 60.279 44.000 0.00 0.00 0.00 3.35
847 1011 1.753649 TGCCTTGCAACAGTTTTGCTA 59.246 42.857 14.69 6.75 45.13 3.49
859 1027 7.484959 GCAACAGTTTTGCTAATTATCAGTACC 59.515 37.037 6.75 0.00 41.87 3.34
1080 1248 4.180817 CACCAACAACCTTCCAAGAAAAC 58.819 43.478 0.00 0.00 0.00 2.43
1510 1678 1.226717 CTCAGCTTCGTCTACGCCC 60.227 63.158 0.00 0.00 39.60 6.13
1709 1877 2.110213 AGCTCCGGCGACAACAAA 59.890 55.556 9.30 0.00 44.37 2.83
1715 1883 0.593773 CCGGCGACAACAAACTTTGG 60.594 55.000 9.30 0.00 34.12 3.28
1763 1931 0.886490 CCATCTCCATTACCGCCAGC 60.886 60.000 0.00 0.00 0.00 4.85
1783 1951 1.395954 CGTCTTCACTGTATCCGTCGA 59.604 52.381 0.00 0.00 0.00 4.20
1845 2013 1.070786 GTCGGGCTCACTGTTTCCA 59.929 57.895 0.00 0.00 0.00 3.53
1937 2105 2.879907 GCCGTCGTGTACAGCCTA 59.120 61.111 0.00 0.00 0.00 3.93
1971 2139 2.666619 GCAACAACACATCAGCAGCTAC 60.667 50.000 0.00 0.00 0.00 3.58
2004 2172 1.746220 CCGAGCTATTATCCTCCTCCG 59.254 57.143 0.00 0.00 0.00 4.63
2179 2347 0.036388 GCCGATGTTTCAGGACTCCA 60.036 55.000 0.00 0.00 0.00 3.86
2185 2353 1.001974 TGTTTCAGGACTCCACCATCG 59.998 52.381 0.00 0.00 0.00 3.84
2307 2475 1.165284 CCCGCTACTCGTAGGAGGAC 61.165 65.000 16.38 4.78 44.93 3.85
2332 2501 7.093289 ACTCTTGCAGATTACTGTACTTGGTAT 60.093 37.037 0.00 0.00 45.04 2.73
2342 2511 5.144832 ACTGTACTTGGTATTTGGGCTTTT 58.855 37.500 0.00 0.00 0.00 2.27
2367 2536 3.840468 TGCATAGCAAATCACAAAGCTG 58.160 40.909 0.00 0.00 37.94 4.24
2368 2537 2.601763 GCATAGCAAATCACAAAGCTGC 59.398 45.455 0.00 0.00 37.94 5.25
2369 2538 3.675228 GCATAGCAAATCACAAAGCTGCT 60.675 43.478 0.00 0.00 45.05 4.24
2370 2539 2.719426 AGCAAATCACAAAGCTGCTC 57.281 45.000 1.00 0.00 39.04 4.26
2455 2624 4.574892 TCGCAGTGATTTCCAAGATACAA 58.425 39.130 0.00 0.00 0.00 2.41
2574 2758 5.358922 TCTTTGAAGTTTTCATTGGCCAAG 58.641 37.500 24.94 15.56 39.84 3.61
2581 2765 0.960364 TTCATTGGCCAAGCTCGGTC 60.960 55.000 24.94 0.00 0.00 4.79
2582 2766 1.377725 CATTGGCCAAGCTCGGTCT 60.378 57.895 24.94 0.47 0.00 3.85
2588 2772 2.266055 CAAGCTCGGTCTGTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
2603 2787 6.234177 GTCTGTCCCCATTAGATTAATCTGG 58.766 44.000 25.22 18.67 37.76 3.86
2604 2788 6.043243 GTCTGTCCCCATTAGATTAATCTGGA 59.957 42.308 25.22 19.42 37.76 3.86
2698 2883 5.182001 AGGTGATCAATTGCACTCTTTGTAC 59.818 40.000 13.65 0.00 35.43 2.90
2714 2900 4.466567 TTGTACTGTTCACTTGCAATCG 57.533 40.909 0.00 0.00 0.00 3.34
2729 2915 5.641777 TGCAATCGTGAATAGATCGAAAG 57.358 39.130 0.00 0.00 37.16 2.62
2731 2917 4.609336 GCAATCGTGAATAGATCGAAAGCC 60.609 45.833 0.00 0.00 37.16 4.35
2740 2926 0.665298 GATCGAAAGCCAGGCCAATC 59.335 55.000 8.22 3.03 0.00 2.67
2741 2927 1.097547 ATCGAAAGCCAGGCCAATCG 61.098 55.000 19.93 19.93 32.50 3.34
2745 2931 2.843912 AAAGCCAGGCCAATCGGAGG 62.844 60.000 8.22 0.00 0.00 4.30
2765 2951 1.227527 CACGAGGCAGTGTTGGACA 60.228 57.895 5.17 0.00 37.35 4.02
2767 2953 1.669115 CGAGGCAGTGTTGGACAGG 60.669 63.158 0.00 0.00 0.00 4.00
2777 2963 3.842925 TTGGACAGGGCCGTTGAGC 62.843 63.158 12.37 4.44 0.00 4.26
2810 2996 3.361158 CCGCCATTGCCGACAACA 61.361 61.111 0.00 0.00 38.99 3.33
2836 3022 1.233285 GCAGGTGCAAGGAGTGTCAG 61.233 60.000 0.00 0.00 41.59 3.51
2844 3030 2.168521 GCAAGGAGTGTCAGCTACCATA 59.831 50.000 0.00 0.00 0.00 2.74
2858 3044 2.240493 ACCATAGCAACCTATCACGC 57.760 50.000 0.00 0.00 31.92 5.34
2859 3045 1.202651 ACCATAGCAACCTATCACGCC 60.203 52.381 0.00 0.00 31.92 5.68
2909 3227 1.762708 ACTAATTGGGATTGGCACCG 58.237 50.000 0.00 0.00 0.00 4.94
2983 3302 1.135094 CTAGGCATGGTGGATGGAGT 58.865 55.000 0.00 0.00 31.99 3.85
3041 3360 2.604686 AGAGCAACGAGAGGGGCA 60.605 61.111 0.00 0.00 36.83 5.36
3042 3361 1.965754 GAGAGCAACGAGAGGGGCAT 61.966 60.000 0.00 0.00 36.83 4.40
3044 3363 3.512516 GCAACGAGAGGGGCATGC 61.513 66.667 9.90 9.90 34.89 4.06
3070 3389 3.615496 CGTACTCGATCGATTGGGTTTTT 59.385 43.478 23.13 0.95 39.71 1.94
3125 3444 3.181466 GGGGCTCTCATTTCTCTTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
3128 3447 5.338300 GGGCTCTCATTTCTCTTCTCTCTTT 60.338 44.000 0.00 0.00 0.00 2.52
3129 3448 5.812127 GGCTCTCATTTCTCTTCTCTCTTTC 59.188 44.000 0.00 0.00 0.00 2.62
3170 3491 2.994186 AGAGTCTCCTCGGTACTCTC 57.006 55.000 14.02 5.53 45.22 3.20
3171 3492 2.189676 AGAGTCTCCTCGGTACTCTCA 58.810 52.381 14.02 0.00 45.22 3.27
3189 3510 3.835395 TCTCAACTCTTCTCCCTTCCTTC 59.165 47.826 0.00 0.00 0.00 3.46
3192 3513 3.837731 CAACTCTTCTCCCTTCCTTCTCT 59.162 47.826 0.00 0.00 0.00 3.10
3195 3516 1.209261 CTTCTCCCTTCCTTCTCTGGC 59.791 57.143 0.00 0.00 0.00 4.85
3219 3540 2.422231 CGCTGACCAGAGAGAGGGG 61.422 68.421 0.47 0.00 0.00 4.79
3230 3551 0.853586 AGAGAGGGGGTGAGAGAGGT 60.854 60.000 0.00 0.00 0.00 3.85
3231 3552 0.396556 GAGAGGGGGTGAGAGAGGTC 60.397 65.000 0.00 0.00 0.00 3.85
3243 3564 2.684735 GAGGTCCGACCCTCCTCT 59.315 66.667 14.32 0.00 44.49 3.69
3244 3565 1.921294 GAGGTCCGACCCTCCTCTA 59.079 63.158 14.32 0.00 44.49 2.43
3301 3622 3.369381 CCTTGATGGCGACTAGTGG 57.631 57.895 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.000506 GTACGCCTTGAAGTGACCTCA 59.999 52.381 0.00 0.00 0.00 3.86
88 89 6.671779 ACACAAAATACCCCCAATGATACAAT 59.328 34.615 0.00 0.00 0.00 2.71
101 102 2.093711 GCATGGGGAACACAAAATACCC 60.094 50.000 0.00 0.00 39.79 3.69
103 104 2.831526 AGGCATGGGGAACACAAAATAC 59.168 45.455 0.00 0.00 0.00 1.89
154 157 7.360946 CCAAGACGAAGGTTAGTCCAAATTTAG 60.361 40.741 0.00 0.00 38.08 1.85
173 177 1.101049 AACCACAAGGCACCAAGACG 61.101 55.000 0.00 0.00 39.06 4.18
178 182 0.965439 GCAATAACCACAAGGCACCA 59.035 50.000 0.00 0.00 39.06 4.17
241 245 4.398358 ACAACTAGCTAGCAAGACATACGA 59.602 41.667 20.91 0.00 0.00 3.43
264 268 1.224870 TGGACGAGCCACCACAAAA 59.775 52.632 0.00 0.00 43.33 2.44
274 278 2.253603 GAAATGTGCAATTGGACGAGC 58.746 47.619 22.87 10.17 39.39 5.03
278 282 6.730960 ATTTCATGAAATGTGCAATTGGAC 57.269 33.333 28.57 21.92 46.80 4.02
334 452 9.262472 GGTGAATATGCGATCGTAATTTTAATC 57.738 33.333 17.81 4.98 0.00 1.75
347 465 1.349026 CAGGGAGGGTGAATATGCGAT 59.651 52.381 0.00 0.00 0.00 4.58
365 483 3.750130 CAGGATCAAAGAGTTGTCCACAG 59.250 47.826 0.00 0.00 37.38 3.66
371 489 5.104735 GGTATCTCCAGGATCAAAGAGTTGT 60.105 44.000 0.00 0.00 35.98 3.32
408 529 2.863740 TGTGTTGTTGTCGTAGAAGCAG 59.136 45.455 0.00 0.00 39.69 4.24
538 689 3.446968 TCCTCGTTTTCTCCTCCCATTA 58.553 45.455 0.00 0.00 0.00 1.90
622 779 1.807142 GCCTTCTAGCCTTGTTGTGAC 59.193 52.381 0.00 0.00 0.00 3.67
636 793 0.907230 AAGGAAGCCTCGAGCCTTCT 60.907 55.000 28.99 16.11 45.47 2.85
647 804 1.072489 GGCTATCTACCCAAGGAAGCC 59.928 57.143 0.00 0.00 42.52 4.35
666 823 4.886579 GGCAAATTTATTCTATGGCCTGG 58.113 43.478 3.32 0.00 37.22 4.45
693 852 5.803020 AAACTTAGTGCAGCTAGTATTGC 57.197 39.130 8.48 8.48 40.67 3.56
836 1000 8.807948 ATGGTACTGATAATTAGCAAAACTGT 57.192 30.769 4.76 1.73 29.96 3.55
894 1062 7.095144 TGGCTATCTTGCAATTTTGACATTTTG 60.095 33.333 0.00 0.00 34.04 2.44
898 1066 5.413499 GTGGCTATCTTGCAATTTTGACAT 58.587 37.500 0.00 0.00 34.04 3.06
899 1067 4.321899 GGTGGCTATCTTGCAATTTTGACA 60.322 41.667 0.00 0.00 34.04 3.58
1470 1638 2.435410 CCGTTGGGCTTACCGTCC 60.435 66.667 0.00 0.00 44.64 4.79
1763 1931 1.395954 TCGACGGATACAGTGAAGACG 59.604 52.381 0.00 0.00 0.00 4.18
1783 1951 4.470876 CGGCAGAACGTCGTGTAT 57.529 55.556 0.00 0.00 38.15 2.29
1828 1996 3.557220 TGGAAACAGTGAGCCCGA 58.443 55.556 0.00 0.00 35.01 5.14
1899 2067 1.956170 CGGTGGCGGATATGCAGTC 60.956 63.158 0.00 0.00 36.28 3.51
1951 2119 2.095567 GGTAGCTGCTGATGTGTTGTTG 60.096 50.000 13.43 0.00 0.00 3.33
1952 2120 2.154462 GGTAGCTGCTGATGTGTTGTT 58.846 47.619 13.43 0.00 0.00 2.83
1957 2125 0.745845 GGTGGGTAGCTGCTGATGTG 60.746 60.000 13.43 0.00 0.00 3.21
2179 2347 4.524318 CGGCGGGTAAGCGATGGT 62.524 66.667 0.00 0.00 38.18 3.55
2254 2422 1.004504 GTAGTAGTACGGCGAACTCGG 60.005 57.143 16.62 0.00 40.23 4.63
2287 2455 2.553727 CCTCCTACGAGTAGCGGGC 61.554 68.421 4.81 0.00 46.49 6.13
2332 2501 3.007723 TGCTATGCATTCAAAAGCCCAAA 59.992 39.130 14.29 0.00 35.57 3.28
2342 2511 4.865925 GCTTTGTGATTTGCTATGCATTCA 59.134 37.500 3.54 0.00 38.76 2.57
2367 2536 5.948992 AGTACAAAGTCTTTGGAATGAGC 57.051 39.130 25.38 8.31 44.81 4.26
2399 2568 8.826710 GTCATTGCTTTGTGCTAGTATATACAA 58.173 33.333 15.18 0.00 43.37 2.41
2400 2569 8.204160 AGTCATTGCTTTGTGCTAGTATATACA 58.796 33.333 15.18 0.94 43.37 2.29
2401 2570 8.594881 AGTCATTGCTTTGTGCTAGTATATAC 57.405 34.615 4.60 4.60 43.37 1.47
2402 2571 9.613428 AAAGTCATTGCTTTGTGCTAGTATATA 57.387 29.630 5.61 0.00 43.37 0.86
2403 2572 8.400947 CAAAGTCATTGCTTTGTGCTAGTATAT 58.599 33.333 17.85 0.00 46.00 0.86
2404 2573 7.751732 CAAAGTCATTGCTTTGTGCTAGTATA 58.248 34.615 17.85 0.00 46.00 1.47
2405 2574 6.615088 CAAAGTCATTGCTTTGTGCTAGTAT 58.385 36.000 17.85 0.00 46.00 2.12
2406 2575 6.000891 CAAAGTCATTGCTTTGTGCTAGTA 57.999 37.500 17.85 0.00 46.00 1.82
2407 2576 4.863491 CAAAGTCATTGCTTTGTGCTAGT 58.137 39.130 17.85 0.00 46.00 2.57
2455 2624 9.915629 TGAATAAACATAAACCAAATTAAGCGT 57.084 25.926 0.00 0.00 0.00 5.07
2492 2661 1.231221 TGCGAGCACGTGGTAAAAAT 58.769 45.000 21.92 0.00 41.98 1.82
2556 2740 3.320626 GAGCTTGGCCAATGAAAACTTC 58.679 45.455 20.85 4.49 0.00 3.01
2581 2765 6.183361 TGTCCAGATTAATCTAATGGGGACAG 60.183 42.308 31.55 14.21 44.49 3.51
2582 2766 5.669904 TGTCCAGATTAATCTAATGGGGACA 59.330 40.000 31.55 31.55 45.69 4.02
2669 2854 8.627403 CAAAGAGTGCAATTGATCACCTATTAT 58.373 33.333 10.34 0.00 33.90 1.28
2676 2861 6.082338 CAGTACAAAGAGTGCAATTGATCAC 58.918 40.000 10.34 8.83 35.00 3.06
2714 2900 2.545946 GCCTGGCTTTCGATCTATTCAC 59.454 50.000 12.43 0.00 0.00 3.18
2729 2915 3.797353 TCCTCCGATTGGCCTGGC 61.797 66.667 11.05 11.05 34.14 4.85
2731 2917 1.450312 GTGTCCTCCGATTGGCCTG 60.450 63.158 3.32 0.00 34.14 4.85
2740 2926 3.374402 ACTGCCTCGTGTCCTCCG 61.374 66.667 0.00 0.00 0.00 4.63
2741 2927 2.100879 AACACTGCCTCGTGTCCTCC 62.101 60.000 4.34 0.00 46.71 4.30
2745 2931 1.069090 TCCAACACTGCCTCGTGTC 59.931 57.895 4.34 0.00 46.71 3.67
2802 2988 0.029300 CCTGCACTTGTTGTTGTCGG 59.971 55.000 0.00 0.00 0.00 4.79
2804 2990 1.798813 GCACCTGCACTTGTTGTTGTC 60.799 52.381 0.00 0.00 41.59 3.18
2844 3030 1.153628 GACGGCGTGATAGGTTGCT 60.154 57.895 21.19 0.00 0.00 3.91
2858 3044 1.433053 TTTGCAACACCAGACGACGG 61.433 55.000 0.00 0.00 0.00 4.79
2859 3045 0.315869 GTTTGCAACACCAGACGACG 60.316 55.000 0.00 0.00 0.00 5.12
2909 3227 1.745087 ACATCATTTGATCCACGCACC 59.255 47.619 0.00 0.00 31.21 5.01
2970 3289 1.212935 GCTTACCACTCCATCCACCAT 59.787 52.381 0.00 0.00 0.00 3.55
2983 3302 0.315886 TCGTTCTCGCTTGCTTACCA 59.684 50.000 0.00 0.00 36.96 3.25
3022 3341 2.650116 GCCCCTCTCGTTGCTCTCA 61.650 63.158 0.00 0.00 0.00 3.27
3024 3343 1.992277 ATGCCCCTCTCGTTGCTCT 60.992 57.895 0.00 0.00 0.00 4.09
3041 3360 4.219802 CAATCGATCGAGTACGTTAGCAT 58.780 43.478 23.84 0.00 40.69 3.79
3042 3361 3.547413 CCAATCGATCGAGTACGTTAGCA 60.547 47.826 23.84 0.00 40.69 3.49
3044 3363 3.003068 ACCCAATCGATCGAGTACGTTAG 59.997 47.826 23.84 7.61 40.69 2.34
3070 3389 4.545929 CATCCTCCATGCGAGCAA 57.454 55.556 0.57 0.00 37.27 3.91
3125 3444 8.525290 AAAGAGGATAGAAGAGAGAGAGAAAG 57.475 38.462 0.00 0.00 0.00 2.62
3128 3447 8.561536 TCTAAAGAGGATAGAAGAGAGAGAGA 57.438 38.462 0.00 0.00 0.00 3.10
3129 3448 8.432805 ACTCTAAAGAGGATAGAAGAGAGAGAG 58.567 40.741 11.53 0.00 46.13 3.20
3170 3491 3.837731 AGAGAAGGAAGGGAGAAGAGTTG 59.162 47.826 0.00 0.00 0.00 3.16
3171 3492 3.837731 CAGAGAAGGAAGGGAGAAGAGTT 59.162 47.826 0.00 0.00 0.00 3.01
3204 3525 1.079256 CACCCCCTCTCTCTGGTCA 59.921 63.158 0.00 0.00 0.00 4.02
3219 3540 2.053277 GGGTCGGACCTCTCTCACC 61.053 68.421 25.39 3.70 38.64 4.02
3230 3551 4.173594 TCTATGTATAGAGGAGGGTCGGA 58.826 47.826 0.00 0.00 34.63 4.55
3231 3552 4.571369 TCTATGTATAGAGGAGGGTCGG 57.429 50.000 0.00 0.00 34.63 4.79
3243 3564 6.562228 ACCTCATACCAAGCCTCTATGTATA 58.438 40.000 0.00 0.00 0.00 1.47
3244 3565 5.407049 ACCTCATACCAAGCCTCTATGTAT 58.593 41.667 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.