Multiple sequence alignment - TraesCS2D01G457900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G457900 chr2D 100.000 4575 0 0 1 4575 565152895 565157469 0.000000e+00 8449.0
1 TraesCS2D01G457900 chr2D 91.499 447 34 2 3097 3542 570134248 570134691 3.030000e-171 612.0
2 TraesCS2D01G457900 chr2D 92.120 368 27 1 4209 4574 570135535 570135902 6.780000e-143 518.0
3 TraesCS2D01G457900 chr2D 95.833 96 3 1 3941 4036 184661223 184661129 2.200000e-33 154.0
4 TraesCS2D01G457900 chr2D 86.466 133 16 2 3543 3675 570135049 570135179 1.330000e-30 145.0
5 TraesCS2D01G457900 chr2D 80.541 185 15 9 3758 3942 570135185 570135348 6.220000e-24 122.0
6 TraesCS2D01G457900 chr2A 91.698 2891 127 36 825 3686 705739983 705742789 0.000000e+00 3904.0
7 TraesCS2D01G457900 chr2A 94.006 317 16 3 1 316 705739483 705739797 1.150000e-130 477.0
8 TraesCS2D01G457900 chr2A 93.077 130 5 2 4448 4573 705743379 705743508 2.170000e-43 187.0
9 TraesCS2D01G457900 chr2A 86.486 111 4 2 336 446 705739787 705739886 1.350000e-20 111.0
10 TraesCS2D01G457900 chr2B 92.962 2103 120 15 1598 3686 677021325 677023413 0.000000e+00 3038.0
11 TraesCS2D01G457900 chr2B 89.499 619 37 11 823 1432 677020442 677021041 0.000000e+00 758.0
12 TraesCS2D01G457900 chr2B 86.140 570 45 15 4024 4573 677023585 677024140 6.600000e-163 584.0
13 TraesCS2D01G457900 chr2B 83.971 549 62 17 9 549 677018865 677019395 1.900000e-138 503.0
14 TraesCS2D01G457900 chr2B 85.470 234 30 4 551 782 500655882 500655651 1.640000e-59 241.0
15 TraesCS2D01G457900 chr2B 92.727 55 4 0 4118 4172 28424617 28424563 3.790000e-11 80.5
16 TraesCS2D01G457900 chr1D 88.696 230 25 1 550 778 489752077 489752306 3.490000e-71 279.0
17 TraesCS2D01G457900 chr1D 95.918 98 1 3 3940 4037 31301637 31301731 6.130000e-34 156.0
18 TraesCS2D01G457900 chr5D 86.957 230 29 1 551 779 103631872 103632101 1.630000e-64 257.0
19 TraesCS2D01G457900 chr5D 92.453 106 4 4 3941 4043 556868398 556868502 1.030000e-31 148.0
20 TraesCS2D01G457900 chr5D 94.000 50 3 0 4121 4170 458811296 458811247 4.910000e-10 76.8
21 TraesCS2D01G457900 chr3B 86.207 232 28 4 550 779 143267040 143267269 9.830000e-62 248.0
22 TraesCS2D01G457900 chr3B 87.129 202 23 3 550 749 644143104 644143304 4.610000e-55 226.0
23 TraesCS2D01G457900 chr6D 86.522 230 24 7 551 776 471569548 471569322 3.540000e-61 246.0
24 TraesCS2D01G457900 chr7D 85.593 236 31 3 549 782 16909723 16909489 1.270000e-60 244.0
25 TraesCS2D01G457900 chr7D 91.935 62 2 1 4102 4163 22657816 22657758 2.930000e-12 84.2
26 TraesCS2D01G457900 chr7D 92.727 55 3 1 4118 4172 376710934 376710987 1.360000e-10 78.7
27 TraesCS2D01G457900 chr5B 83.913 230 36 1 554 782 677802060 677801831 7.710000e-53 219.0
28 TraesCS2D01G457900 chr5B 84.211 228 31 5 555 779 376023584 376023359 2.770000e-52 217.0
29 TraesCS2D01G457900 chr5B 91.589 107 6 2 3926 4032 706389212 706389109 1.330000e-30 145.0
30 TraesCS2D01G457900 chr4B 98.876 89 1 0 3937 4025 507357776 507357688 4.740000e-35 159.0
31 TraesCS2D01G457900 chr4B 86.364 66 5 1 4102 4167 166760959 166760898 8.210000e-08 69.4
32 TraesCS2D01G457900 chr3A 98.876 89 1 0 3937 4025 168540327 168540415 4.740000e-35 159.0
33 TraesCS2D01G457900 chr5A 95.918 98 2 2 3937 4033 178391490 178391586 1.700000e-34 158.0
34 TraesCS2D01G457900 chr5A 94.000 100 5 1 3930 4029 660790505 660790603 2.850000e-32 150.0
35 TraesCS2D01G457900 chr6A 92.381 105 5 3 3940 4042 48554773 48554670 3.690000e-31 147.0
36 TraesCS2D01G457900 chr6B 89.855 69 7 0 4102 4170 120677376 120677308 6.300000e-14 89.8
37 TraesCS2D01G457900 chr3D 91.071 56 5 0 4118 4173 181108067 181108122 4.910000e-10 76.8
38 TraesCS2D01G457900 chr1B 86.765 68 7 1 4102 4169 497471672 497471607 1.770000e-09 75.0
39 TraesCS2D01G457900 chr1A 86.765 68 7 1 4102 4169 472080757 472080692 1.770000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G457900 chr2D 565152895 565157469 4574 False 8449.00 8449 100.00000 1 4575 1 chr2D.!!$F1 4574
1 TraesCS2D01G457900 chr2D 570134248 570135902 1654 False 349.25 612 87.65650 3097 4574 4 chr2D.!!$F2 1477
2 TraesCS2D01G457900 chr2A 705739483 705743508 4025 False 1169.75 3904 91.31675 1 4573 4 chr2A.!!$F1 4572
3 TraesCS2D01G457900 chr2B 677018865 677024140 5275 False 1220.75 3038 88.14300 9 4573 4 chr2B.!!$F1 4564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 1006 0.100325 TGGCGCTCGCATTATTTTGG 59.900 50.000 16.36 0.00 44.11 3.28 F
674 1032 0.249120 TCCATGCTTCCGACGATGTT 59.751 50.000 0.00 0.00 0.00 2.71 F
753 1111 0.250038 TCTCAAGATGCTATGCCGGC 60.250 55.000 22.73 22.73 0.00 6.13 F
755 1113 0.250038 TCAAGATGCTATGCCGGCTC 60.250 55.000 29.70 15.82 0.00 4.70 F
757 1115 0.250209 AAGATGCTATGCCGGCTCAG 60.250 55.000 29.70 23.95 0.00 3.35 F
775 1133 0.975040 AGGCTCTCGAAGGTGCTCAT 60.975 55.000 0.00 0.00 0.00 2.90 F
1394 2178 1.202290 GCATCCAGGTAATGCCGTTTG 60.202 52.381 2.15 0.00 42.95 2.93 F
1415 2214 1.610038 TCAGGCAACAGTTTGATGCAG 59.390 47.619 12.33 5.49 46.28 4.41 F
2087 3039 1.705745 GGAAAGGGGAAGAGTTCTGGT 59.294 52.381 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 2488 0.032615 TAAATGTGGGCATGGTCCCC 60.033 55.000 5.99 3.11 45.97 4.81 R
2173 3125 0.955428 TGTGACAAATCTGCCGAGCC 60.955 55.000 0.00 0.00 0.00 4.70 R
2305 3258 2.235650 TGCTTCTTCCCACTCAGATCTG 59.764 50.000 17.07 17.07 0.00 2.90 R
2710 3673 3.197766 TCATGGCTTCTTCCGTATCTTGT 59.802 43.478 0.00 0.00 0.00 3.16 R
2755 3718 8.160765 TCCAACTTTATCTCTTCCAACATAACA 58.839 33.333 0.00 0.00 0.00 2.41 R
2756 3719 8.451748 GTCCAACTTTATCTCTTCCAACATAAC 58.548 37.037 0.00 0.00 0.00 1.89 R
3169 4133 1.951602 TGACTGAAGGACTTTCGACGA 59.048 47.619 0.00 0.00 38.71 4.20 R
3348 4312 2.497675 TGCTCCACATCTACTCTCCAAC 59.502 50.000 0.00 0.00 0.00 3.77 R
4009 5340 0.115745 AACTTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 5.646692 TGAGCCTATTAGCCATAACCTTT 57.353 39.130 0.00 0.00 0.00 3.11
94 95 5.008712 GCCTATTAGCCATAACCTTTGACAC 59.991 44.000 0.00 0.00 0.00 3.67
170 173 1.605753 GATTATTCACCTTCGGGGCC 58.394 55.000 0.00 0.00 40.03 5.80
176 179 2.529389 ACCTTCGGGGCCAGAACT 60.529 61.111 15.41 0.57 40.03 3.01
263 268 2.592512 TCTTCCTCTCCATAAGGACCCT 59.407 50.000 0.00 0.00 42.63 4.34
277 282 8.711170 CCATAAGGACCCTAGTGTTTATAAAGA 58.289 37.037 0.00 0.00 36.89 2.52
305 310 4.771114 TGTGTCCAAAATCTATCCGGAT 57.229 40.909 22.95 22.95 0.00 4.18
307 312 3.741344 GTGTCCAAAATCTATCCGGATCG 59.259 47.826 23.08 15.79 0.00 3.69
320 325 2.744787 CGGATCGGAGCTTTTCAATG 57.255 50.000 0.00 0.00 0.00 2.82
321 326 1.331756 CGGATCGGAGCTTTTCAATGG 59.668 52.381 0.00 0.00 0.00 3.16
324 329 3.633986 GGATCGGAGCTTTTCAATGGAAT 59.366 43.478 0.00 0.00 31.93 3.01
328 333 4.336433 TCGGAGCTTTTCAATGGAATCATC 59.664 41.667 0.00 0.00 31.93 2.92
355 360 4.010349 ACATAGCACTTTTTACCTCCTGC 58.990 43.478 0.00 0.00 0.00 4.85
413 420 6.979817 TGTATTCATGCCATTAACTTTCATGC 59.020 34.615 0.00 0.00 35.70 4.06
457 464 1.561076 TCATCCAACCCCTCTGATGTG 59.439 52.381 0.00 0.00 36.75 3.21
477 484 9.066892 TGATGTGTATAAGCTCCCAAAAATATC 57.933 33.333 0.00 0.00 0.00 1.63
484 491 4.747810 AGCTCCCAAAAATATCTTTTGCG 58.252 39.130 13.31 8.39 37.89 4.85
487 494 5.515270 GCTCCCAAAAATATCTTTTGCGTAC 59.485 40.000 13.31 0.00 37.89 3.67
490 497 8.514330 TCCCAAAAATATCTTTTGCGTACTAT 57.486 30.769 13.31 0.00 37.89 2.12
502 509 4.569761 TGCGTACTATTCATCTCCACTC 57.430 45.455 0.00 0.00 0.00 3.51
503 510 3.951680 TGCGTACTATTCATCTCCACTCA 59.048 43.478 0.00 0.00 0.00 3.41
516 523 0.947244 CCACTCAACGCTTGAAGCTT 59.053 50.000 15.92 0.00 39.60 3.74
517 524 2.143122 CCACTCAACGCTTGAAGCTTA 58.857 47.619 15.92 0.00 39.60 3.09
519 526 2.096218 CACTCAACGCTTGAAGCTTACC 60.096 50.000 15.92 0.00 39.60 2.85
520 527 2.224305 ACTCAACGCTTGAAGCTTACCT 60.224 45.455 15.92 0.00 39.60 3.08
552 559 9.913451 TTCTTTCAACTTTTCATTTAATTTGCG 57.087 25.926 0.00 0.00 0.00 4.85
554 561 9.913451 CTTTCAACTTTTCATTTAATTTGCGAA 57.087 25.926 0.00 0.00 0.00 4.70
556 563 7.846485 TCAACTTTTCATTTAATTTGCGAACC 58.154 30.769 0.00 0.00 0.00 3.62
557 564 7.492669 TCAACTTTTCATTTAATTTGCGAACCA 59.507 29.630 0.00 0.00 0.00 3.67
558 565 7.778470 ACTTTTCATTTAATTTGCGAACCAA 57.222 28.000 0.00 0.00 0.00 3.67
559 566 7.626446 ACTTTTCATTTAATTTGCGAACCAAC 58.374 30.769 0.00 0.00 31.97 3.77
562 569 5.226396 TCATTTAATTTGCGAACCAACCTG 58.774 37.500 0.00 0.00 31.97 4.00
563 570 4.657436 TTTAATTTGCGAACCAACCTGT 57.343 36.364 0.00 0.00 31.97 4.00
579 937 3.189606 ACCTGTGATTGGATGGTTAGGA 58.810 45.455 0.00 0.00 0.00 2.94
580 938 3.200825 ACCTGTGATTGGATGGTTAGGAG 59.799 47.826 0.00 0.00 0.00 3.69
583 941 3.199946 TGTGATTGGATGGTTAGGAGGAC 59.800 47.826 0.00 0.00 0.00 3.85
586 944 2.642171 TGGATGGTTAGGAGGACAGT 57.358 50.000 0.00 0.00 0.00 3.55
587 945 2.187958 TGGATGGTTAGGAGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
588 946 2.225522 TGGATGGTTAGGAGGACAGTGA 60.226 50.000 0.00 0.00 0.00 3.41
589 947 3.041946 GGATGGTTAGGAGGACAGTGAT 58.958 50.000 0.00 0.00 0.00 3.06
591 949 4.841246 GGATGGTTAGGAGGACAGTGATAT 59.159 45.833 0.00 0.00 0.00 1.63
593 951 5.144159 TGGTTAGGAGGACAGTGATATCT 57.856 43.478 3.98 0.00 0.00 1.98
594 952 5.529289 TGGTTAGGAGGACAGTGATATCTT 58.471 41.667 3.98 0.00 0.00 2.40
595 953 5.598830 TGGTTAGGAGGACAGTGATATCTTC 59.401 44.000 3.98 0.00 0.00 2.87
597 955 6.239176 GGTTAGGAGGACAGTGATATCTTCAG 60.239 46.154 3.98 0.00 34.17 3.02
598 956 3.640967 AGGAGGACAGTGATATCTTCAGC 59.359 47.826 3.98 0.00 34.17 4.26
599 957 3.640967 GGAGGACAGTGATATCTTCAGCT 59.359 47.826 3.98 0.00 34.17 4.24
600 958 4.261994 GGAGGACAGTGATATCTTCAGCTC 60.262 50.000 3.98 0.00 34.17 4.09
602 960 4.099266 AGGACAGTGATATCTTCAGCTCAC 59.901 45.833 3.98 0.00 38.59 3.51
604 962 3.771479 ACAGTGATATCTTCAGCTCACCA 59.229 43.478 3.98 0.00 39.00 4.17
605 963 4.223700 ACAGTGATATCTTCAGCTCACCAA 59.776 41.667 3.98 0.00 39.00 3.67
606 964 4.809958 CAGTGATATCTTCAGCTCACCAAG 59.190 45.833 3.98 0.00 39.00 3.61
607 965 4.125703 GTGATATCTTCAGCTCACCAAGG 58.874 47.826 3.98 0.00 34.17 3.61
608 966 3.776969 TGATATCTTCAGCTCACCAAGGT 59.223 43.478 3.98 0.00 35.64 3.50
609 967 4.225942 TGATATCTTCAGCTCACCAAGGTT 59.774 41.667 3.98 0.00 31.91 3.50
613 971 2.260844 TCAGCTCACCAAGGTTCAAG 57.739 50.000 0.00 0.00 31.91 3.02
614 972 1.490490 TCAGCTCACCAAGGTTCAAGT 59.510 47.619 0.00 0.00 31.91 3.16
615 973 1.876156 CAGCTCACCAAGGTTCAAGTC 59.124 52.381 0.00 0.00 31.91 3.01
616 974 1.202818 AGCTCACCAAGGTTCAAGTCC 60.203 52.381 0.00 0.00 29.11 3.85
617 975 1.202818 GCTCACCAAGGTTCAAGTCCT 60.203 52.381 0.00 0.00 36.81 3.85
618 976 2.038557 GCTCACCAAGGTTCAAGTCCTA 59.961 50.000 0.00 0.00 34.56 2.94
619 977 3.866449 GCTCACCAAGGTTCAAGTCCTAG 60.866 52.174 0.00 0.00 34.56 3.02
620 978 3.578716 CTCACCAAGGTTCAAGTCCTAGA 59.421 47.826 0.00 0.00 34.56 2.43
621 979 3.323979 TCACCAAGGTTCAAGTCCTAGAC 59.676 47.826 0.00 0.00 34.56 2.59
632 990 3.618690 AGTCCTAGACTTGACATTGGC 57.381 47.619 0.00 0.00 40.28 4.52
633 991 2.093973 AGTCCTAGACTTGACATTGGCG 60.094 50.000 0.00 0.00 40.28 5.69
634 992 1.009829 CCTAGACTTGACATTGGCGC 58.990 55.000 0.00 0.00 0.00 6.53
635 993 1.406069 CCTAGACTTGACATTGGCGCT 60.406 52.381 7.64 0.00 0.00 5.92
636 994 1.929836 CTAGACTTGACATTGGCGCTC 59.070 52.381 7.64 0.00 0.00 5.03
637 995 1.016130 AGACTTGACATTGGCGCTCG 61.016 55.000 7.64 0.00 0.00 5.03
638 996 2.099062 CTTGACATTGGCGCTCGC 59.901 61.111 7.64 5.60 41.06 5.03
639 997 2.667874 TTGACATTGGCGCTCGCA 60.668 55.556 16.36 0.00 44.11 5.10
640 998 1.985447 CTTGACATTGGCGCTCGCAT 61.985 55.000 16.36 0.00 44.11 4.73
641 999 1.585267 TTGACATTGGCGCTCGCATT 61.585 50.000 16.36 0.00 44.11 3.56
643 1001 0.588252 GACATTGGCGCTCGCATTAT 59.412 50.000 16.36 3.25 44.11 1.28
645 1003 1.405105 ACATTGGCGCTCGCATTATTT 59.595 42.857 16.36 0.00 44.11 1.40
647 1005 1.906757 TTGGCGCTCGCATTATTTTG 58.093 45.000 16.36 0.00 44.11 2.44
648 1006 0.100325 TGGCGCTCGCATTATTTTGG 59.900 50.000 16.36 0.00 44.11 3.28
649 1007 0.380378 GGCGCTCGCATTATTTTGGA 59.620 50.000 16.36 0.00 44.11 3.53
651 1009 2.543653 GGCGCTCGCATTATTTTGGATT 60.544 45.455 16.36 0.00 44.11 3.01
652 1010 3.115554 GCGCTCGCATTATTTTGGATTT 58.884 40.909 9.59 0.00 41.49 2.17
653 1011 4.286910 GCGCTCGCATTATTTTGGATTTA 58.713 39.130 9.59 0.00 41.49 1.40
654 1012 4.917415 GCGCTCGCATTATTTTGGATTTAT 59.083 37.500 9.59 0.00 41.49 1.40
655 1013 5.402270 GCGCTCGCATTATTTTGGATTTATT 59.598 36.000 9.59 0.00 41.49 1.40
656 1014 6.398935 GCGCTCGCATTATTTTGGATTTATTC 60.399 38.462 9.59 0.00 41.49 1.75
657 1015 6.088085 CGCTCGCATTATTTTGGATTTATTCC 59.912 38.462 0.00 0.00 45.69 3.01
668 1026 4.489679 GGATTTATTCCATGCTTCCGAC 57.510 45.455 0.00 0.00 44.74 4.79
669 1027 3.058914 GGATTTATTCCATGCTTCCGACG 60.059 47.826 0.00 0.00 44.74 5.12
670 1028 2.971660 TTATTCCATGCTTCCGACGA 57.028 45.000 0.00 0.00 0.00 4.20
672 1030 1.586422 ATTCCATGCTTCCGACGATG 58.414 50.000 0.00 0.00 0.00 3.84
674 1032 0.249120 TCCATGCTTCCGACGATGTT 59.751 50.000 0.00 0.00 0.00 2.71
675 1033 0.652592 CCATGCTTCCGACGATGTTC 59.347 55.000 0.00 0.00 0.00 3.18
676 1034 0.298707 CATGCTTCCGACGATGTTCG 59.701 55.000 0.00 0.00 46.93 3.95
686 1044 3.507597 CGATGTTCGTTCAGTGGGA 57.492 52.632 0.00 0.00 34.72 4.37
687 1045 1.350193 CGATGTTCGTTCAGTGGGAG 58.650 55.000 0.00 0.00 34.72 4.30
688 1046 1.726853 GATGTTCGTTCAGTGGGAGG 58.273 55.000 0.00 0.00 0.00 4.30
690 1048 0.679505 TGTTCGTTCAGTGGGAGGAG 59.320 55.000 0.00 0.00 0.00 3.69
691 1049 0.966920 GTTCGTTCAGTGGGAGGAGA 59.033 55.000 0.00 0.00 0.00 3.71
696 1054 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
708 1066 4.695231 ACGTTCCCGTCGACTGCG 62.695 66.667 14.70 12.25 46.28 5.18
709 1067 4.394078 CGTTCCCGTCGACTGCGA 62.394 66.667 14.70 4.16 45.71 5.10
725 1083 4.057428 GAGGCGCCTGTCGTGACT 62.057 66.667 38.41 6.10 45.70 3.41
726 1084 3.575351 GAGGCGCCTGTCGTGACTT 62.575 63.158 38.41 5.11 41.86 3.01
727 1085 3.112709 GGCGCCTGTCGTGACTTC 61.113 66.667 22.15 0.00 41.07 3.01
729 1087 1.738099 GCGCCTGTCGTGACTTCAT 60.738 57.895 0.00 0.00 41.07 2.57
730 1088 0.457853 GCGCCTGTCGTGACTTCATA 60.458 55.000 0.00 0.00 41.07 2.15
731 1089 1.990799 CGCCTGTCGTGACTTCATAA 58.009 50.000 1.23 0.00 0.00 1.90
732 1090 2.333926 CGCCTGTCGTGACTTCATAAA 58.666 47.619 1.23 0.00 0.00 1.40
733 1091 2.734606 CGCCTGTCGTGACTTCATAAAA 59.265 45.455 1.23 0.00 0.00 1.52
735 1093 4.492570 CGCCTGTCGTGACTTCATAAAATC 60.493 45.833 1.23 0.00 0.00 2.17
736 1094 4.631813 GCCTGTCGTGACTTCATAAAATCT 59.368 41.667 1.23 0.00 0.00 2.40
737 1095 5.220491 GCCTGTCGTGACTTCATAAAATCTC 60.220 44.000 1.23 0.00 0.00 2.75
738 1096 5.869344 CCTGTCGTGACTTCATAAAATCTCA 59.131 40.000 1.23 0.00 0.00 3.27
739 1097 6.368791 CCTGTCGTGACTTCATAAAATCTCAA 59.631 38.462 1.23 0.00 0.00 3.02
740 1098 7.351414 TGTCGTGACTTCATAAAATCTCAAG 57.649 36.000 1.23 0.00 0.00 3.02
741 1099 7.151976 TGTCGTGACTTCATAAAATCTCAAGA 58.848 34.615 1.23 0.00 0.00 3.02
742 1100 7.819415 TGTCGTGACTTCATAAAATCTCAAGAT 59.181 33.333 1.23 0.00 36.07 2.40
744 1102 6.904011 CGTGACTTCATAAAATCTCAAGATGC 59.096 38.462 0.00 0.00 34.49 3.91
746 1104 9.102757 GTGACTTCATAAAATCTCAAGATGCTA 57.897 33.333 0.00 0.00 34.49 3.49
747 1105 9.842775 TGACTTCATAAAATCTCAAGATGCTAT 57.157 29.630 0.00 0.00 34.49 2.97
749 1107 8.566260 ACTTCATAAAATCTCAAGATGCTATGC 58.434 33.333 12.53 0.00 33.88 3.14
750 1108 7.444629 TCATAAAATCTCAAGATGCTATGCC 57.555 36.000 12.53 0.00 33.88 4.40
751 1109 4.825546 AAAATCTCAAGATGCTATGCCG 57.174 40.909 0.00 0.00 34.49 5.69
752 1110 2.469274 ATCTCAAGATGCTATGCCGG 57.531 50.000 0.00 0.00 32.68 6.13
753 1111 0.250038 TCTCAAGATGCTATGCCGGC 60.250 55.000 22.73 22.73 0.00 6.13
754 1112 0.250209 CTCAAGATGCTATGCCGGCT 60.250 55.000 29.70 15.76 0.00 5.52
755 1113 0.250038 TCAAGATGCTATGCCGGCTC 60.250 55.000 29.70 15.82 0.00 4.70
756 1114 0.533531 CAAGATGCTATGCCGGCTCA 60.534 55.000 29.70 19.51 0.00 4.26
757 1115 0.250209 AAGATGCTATGCCGGCTCAG 60.250 55.000 29.70 23.95 0.00 3.35
768 1126 2.498726 GGCTCAGGCTCTCGAAGG 59.501 66.667 0.00 0.00 38.73 3.46
769 1127 2.355193 GGCTCAGGCTCTCGAAGGT 61.355 63.158 0.00 0.00 38.73 3.50
770 1128 1.153667 GCTCAGGCTCTCGAAGGTG 60.154 63.158 0.00 0.00 35.22 4.00
771 1129 1.153667 CTCAGGCTCTCGAAGGTGC 60.154 63.158 0.00 0.00 0.00 5.01
772 1130 1.603236 CTCAGGCTCTCGAAGGTGCT 61.603 60.000 0.00 0.00 0.00 4.40
774 1132 1.607756 AGGCTCTCGAAGGTGCTCA 60.608 57.895 0.00 0.00 0.00 4.26
775 1133 0.975040 AGGCTCTCGAAGGTGCTCAT 60.975 55.000 0.00 0.00 0.00 2.90
779 1137 2.302260 CTCTCGAAGGTGCTCATAGGA 58.698 52.381 0.00 0.00 0.00 2.94
780 1138 2.293122 CTCTCGAAGGTGCTCATAGGAG 59.707 54.545 0.00 0.00 44.33 3.69
838 1618 2.399448 GAGCGAATACTTGAGCCTAGC 58.601 52.381 0.00 0.00 0.00 3.42
903 1683 3.118992 GGCCAGGAAAAGAACATCCATTC 60.119 47.826 0.00 0.00 38.23 2.67
1074 1854 3.793888 CCCGCCCCCTCTACAACC 61.794 72.222 0.00 0.00 0.00 3.77
1075 1855 2.687566 CCGCCCCCTCTACAACCT 60.688 66.667 0.00 0.00 0.00 3.50
1076 1856 2.732619 CCGCCCCCTCTACAACCTC 61.733 68.421 0.00 0.00 0.00 3.85
1077 1857 2.732619 CGCCCCCTCTACAACCTCC 61.733 68.421 0.00 0.00 0.00 4.30
1128 1908 2.464459 CGCTGATTTCCCTGACGCC 61.464 63.158 0.00 0.00 0.00 5.68
1215 1999 5.220739 CCTCATAGCTCACGGATTTTCTTTG 60.221 44.000 0.00 0.00 0.00 2.77
1336 2120 4.222847 GCGGACGACCCCAGGATC 62.223 72.222 0.00 0.00 0.00 3.36
1392 2176 2.793831 GCATCCAGGTAATGCCGTT 58.206 52.632 2.15 0.00 42.95 4.44
1394 2178 1.202290 GCATCCAGGTAATGCCGTTTG 60.202 52.381 2.15 0.00 42.95 2.93
1415 2214 1.610038 TCAGGCAACAGTTTGATGCAG 59.390 47.619 12.33 5.49 46.28 4.41
1449 2248 6.525628 GCTCATGTCATGTGTAAATTGTTCTG 59.474 38.462 12.54 0.00 0.00 3.02
1450 2249 7.509141 TCATGTCATGTGTAAATTGTTCTGT 57.491 32.000 12.54 0.00 0.00 3.41
1471 2399 8.335532 TCTGTAATTTACAAGTTTCTGGGATG 57.664 34.615 10.32 0.00 38.38 3.51
1511 2440 4.883585 ACAATGCTTATGGTGGTCATACTG 59.116 41.667 0.00 0.00 38.01 2.74
1556 2485 5.643379 TGCAAAAGCTTCGATAGGATTTT 57.357 34.783 0.00 0.00 0.00 1.82
1559 2488 5.289434 GCAAAAGCTTCGATAGGATTTTTGG 59.711 40.000 0.00 5.71 34.64 3.28
1560 2489 5.582689 AAAGCTTCGATAGGATTTTTGGG 57.417 39.130 0.00 0.00 0.00 4.12
1583 2512 3.181476 GGACCATGCCCACATTTAACATC 60.181 47.826 0.00 0.00 32.87 3.06
1642 2590 5.952347 GGAACAGATTTTACCAAGAGGGATT 59.048 40.000 0.00 0.00 41.15 3.01
1683 2631 9.313118 TCCATATGGATAATTAATCATTCGACG 57.687 33.333 20.98 0.00 39.78 5.12
1693 2641 4.795970 AATCATTCGACGCTTGATTACC 57.204 40.909 17.85 0.00 38.09 2.85
1694 2642 3.520290 TCATTCGACGCTTGATTACCT 57.480 42.857 0.00 0.00 0.00 3.08
1767 2715 8.746922 ACACATTTATATGTTCAACTTTGCAG 57.253 30.769 0.00 0.00 42.29 4.41
1769 2717 9.069078 CACATTTATATGTTCAACTTTGCAGAG 57.931 33.333 2.03 2.03 42.29 3.35
2087 3039 1.705745 GGAAAGGGGAAGAGTTCTGGT 59.294 52.381 0.00 0.00 0.00 4.00
2173 3125 6.748333 TGAAATTGAAGCTCTCCAAGTATG 57.252 37.500 0.00 0.00 0.00 2.39
2404 3357 3.599285 CTGGGCCTTCGCAACGGTA 62.599 63.158 4.53 0.00 36.38 4.02
2481 3435 4.730949 TTATACGCTACCTTTGTCAGCT 57.269 40.909 0.00 0.00 33.03 4.24
2510 3473 4.898320 AGTCATTGTGTAGAATCTGTGCA 58.102 39.130 0.00 0.00 0.00 4.57
2526 3489 4.883585 TCTGTGCAGACTCAAGATTTTGTT 59.116 37.500 0.00 0.00 32.56 2.83
2751 3714 4.038271 TGAAATGCCAGGAGAGAAATGT 57.962 40.909 0.00 0.00 0.00 2.71
2752 3715 4.410099 TGAAATGCCAGGAGAGAAATGTT 58.590 39.130 0.00 0.00 0.00 2.71
2753 3716 5.569355 TGAAATGCCAGGAGAGAAATGTTA 58.431 37.500 0.00 0.00 0.00 2.41
2754 3717 6.009589 TGAAATGCCAGGAGAGAAATGTTAA 58.990 36.000 0.00 0.00 0.00 2.01
2755 3718 6.664816 TGAAATGCCAGGAGAGAAATGTTAAT 59.335 34.615 0.00 0.00 0.00 1.40
2756 3719 6.461110 AATGCCAGGAGAGAAATGTTAATG 57.539 37.500 0.00 0.00 0.00 1.90
2782 3745 8.451748 GTTATGTTGGAAGAGATAAAGTTGGAC 58.548 37.037 0.00 0.00 0.00 4.02
2786 3749 5.794894 TGGAAGAGATAAAGTTGGACAGTC 58.205 41.667 0.00 0.00 0.00 3.51
2798 3761 2.338809 TGGACAGTCCATCAGAAAGGT 58.661 47.619 19.21 0.00 42.67 3.50
2803 3766 2.738846 CAGTCCATCAGAAAGGTTGACG 59.261 50.000 0.00 0.00 0.00 4.35
2827 3790 6.631314 CGGATGGGGGATATGAAGATTCTAAG 60.631 46.154 0.00 0.00 0.00 2.18
2830 3793 4.289672 GGGGGATATGAAGATTCTAAGGCA 59.710 45.833 0.00 0.00 0.00 4.75
3140 4104 7.156673 GCATCCCTCATTTGCATTATTATGTT 58.843 34.615 0.00 0.00 36.40 2.71
3169 4133 3.555966 GCTATGGGCAACTCCTACAAAT 58.444 45.455 0.00 0.00 41.35 2.32
3184 4148 4.326548 CCTACAAATCGTCGAAAGTCCTTC 59.673 45.833 0.00 0.00 0.00 3.46
3348 4312 2.996621 GCAACCTACAGAACAGCACTAG 59.003 50.000 0.00 0.00 0.00 2.57
3395 4359 3.222603 AGTTTCGGACAAGAATTTGCCT 58.777 40.909 0.00 0.00 37.85 4.75
3538 4502 6.062095 AGCTCTTACCAAGTGTGTTTTGTAT 58.938 36.000 0.00 0.00 0.00 2.29
3580 4901 7.325660 TGAGCTTTCCTTGCAATAAGATTAG 57.674 36.000 16.02 8.76 0.00 1.73
3630 4961 3.823304 GTCCTTGAGTGCTCTTTGGAATT 59.177 43.478 0.68 0.00 0.00 2.17
3650 4981 6.370718 GGAATTGCAGAATTCTCAAAAAGCAT 59.629 34.615 14.47 3.62 44.81 3.79
3680 5011 4.918588 TGGGAAGATTTTGGTTAGACTCC 58.081 43.478 0.00 0.00 0.00 3.85
3681 5012 4.352595 TGGGAAGATTTTGGTTAGACTCCA 59.647 41.667 0.00 0.00 0.00 3.86
3682 5013 5.015178 TGGGAAGATTTTGGTTAGACTCCAT 59.985 40.000 0.00 0.00 34.75 3.41
3684 5015 6.418946 GGAAGATTTTGGTTAGACTCCATCT 58.581 40.000 0.00 0.00 41.95 2.90
3686 5017 6.882768 AGATTTTGGTTAGACTCCATCTCT 57.117 37.500 0.00 0.00 39.04 3.10
3687 5018 7.264294 AGATTTTGGTTAGACTCCATCTCTT 57.736 36.000 0.00 0.00 39.04 2.85
3688 5019 7.334858 AGATTTTGGTTAGACTCCATCTCTTC 58.665 38.462 0.00 0.00 39.04 2.87
3689 5020 6.688073 TTTTGGTTAGACTCCATCTCTTCT 57.312 37.500 0.00 0.00 39.04 2.85
3690 5021 6.688073 TTTGGTTAGACTCCATCTCTTCTT 57.312 37.500 0.00 0.00 39.04 2.52
3691 5022 6.688073 TTGGTTAGACTCCATCTCTTCTTT 57.312 37.500 0.00 0.00 39.04 2.52
3692 5023 6.688073 TGGTTAGACTCCATCTCTTCTTTT 57.312 37.500 0.00 0.00 39.04 2.27
3693 5024 7.079451 TGGTTAGACTCCATCTCTTCTTTTT 57.921 36.000 0.00 0.00 39.04 1.94
3694 5025 7.162082 TGGTTAGACTCCATCTCTTCTTTTTC 58.838 38.462 0.00 0.00 39.04 2.29
3695 5026 7.016661 TGGTTAGACTCCATCTCTTCTTTTTCT 59.983 37.037 0.00 0.00 39.04 2.52
3696 5027 7.333174 GGTTAGACTCCATCTCTTCTTTTTCTG 59.667 40.741 0.00 0.00 39.04 3.02
3697 5028 5.244755 AGACTCCATCTCTTCTTTTTCTGC 58.755 41.667 0.00 0.00 28.16 4.26
3698 5029 3.999663 ACTCCATCTCTTCTTTTTCTGCG 59.000 43.478 0.00 0.00 0.00 5.18
3699 5030 3.338249 TCCATCTCTTCTTTTTCTGCGG 58.662 45.455 0.00 0.00 0.00 5.69
3700 5031 2.421424 CCATCTCTTCTTTTTCTGCGGG 59.579 50.000 0.00 0.00 0.00 6.13
3701 5032 2.185004 TCTCTTCTTTTTCTGCGGGG 57.815 50.000 0.00 0.00 0.00 5.73
3702 5033 1.168714 CTCTTCTTTTTCTGCGGGGG 58.831 55.000 0.00 0.00 0.00 5.40
3703 5034 0.768622 TCTTCTTTTTCTGCGGGGGA 59.231 50.000 0.00 0.00 0.00 4.81
3704 5035 1.144093 TCTTCTTTTTCTGCGGGGGAA 59.856 47.619 0.00 0.00 0.00 3.97
3705 5036 1.960689 CTTCTTTTTCTGCGGGGGAAA 59.039 47.619 0.00 0.00 0.00 3.13
3706 5037 2.074729 TCTTTTTCTGCGGGGGAAAA 57.925 45.000 0.00 0.00 39.79 2.29
3707 5038 2.389715 TCTTTTTCTGCGGGGGAAAAA 58.610 42.857 11.89 11.89 44.83 1.94
3728 5059 5.825593 AAAACAGAGATGGAGTCTAACCA 57.174 39.130 0.00 0.00 41.83 3.67
3729 5060 5.825593 AAACAGAGATGGAGTCTAACCAA 57.174 39.130 0.00 0.00 40.93 3.67
3730 5061 5.825593 AACAGAGATGGAGTCTAACCAAA 57.174 39.130 0.00 0.00 40.93 3.28
3731 5062 5.825593 ACAGAGATGGAGTCTAACCAAAA 57.174 39.130 0.00 0.00 40.93 2.44
3732 5063 6.380079 ACAGAGATGGAGTCTAACCAAAAT 57.620 37.500 0.00 0.00 40.93 1.82
3733 5064 6.410540 ACAGAGATGGAGTCTAACCAAAATC 58.589 40.000 0.00 0.00 40.93 2.17
3734 5065 6.214412 ACAGAGATGGAGTCTAACCAAAATCT 59.786 38.462 0.00 0.00 40.93 2.40
3760 5091 0.175760 TCGGCTGATGTAACTGCTCC 59.824 55.000 0.00 0.00 35.59 4.70
3763 5094 1.373570 GCTGATGTAACTGCTCCCAC 58.626 55.000 0.00 0.00 33.20 4.61
3855 5186 8.744568 AGGACTCCTTGATCTTCATATTTTTC 57.255 34.615 0.00 0.00 0.00 2.29
3856 5187 8.555729 AGGACTCCTTGATCTTCATATTTTTCT 58.444 33.333 0.00 0.00 0.00 2.52
3895 5226 0.938713 TTGGCTACGACGTTGTTTGG 59.061 50.000 14.93 6.34 0.00 3.28
3917 5248 3.321497 GTTGTTGTTTTTGGCTGTGTGA 58.679 40.909 0.00 0.00 0.00 3.58
3946 5277 2.700329 GCTGCTGCAAGATACTCCC 58.300 57.895 11.11 0.00 39.41 4.30
3947 5278 0.179936 GCTGCTGCAAGATACTCCCT 59.820 55.000 11.11 0.00 39.41 4.20
3948 5279 1.809651 GCTGCTGCAAGATACTCCCTC 60.810 57.143 11.11 0.00 39.41 4.30
3949 5280 1.761784 CTGCTGCAAGATACTCCCTCT 59.238 52.381 3.02 0.00 34.07 3.69
3950 5281 1.483827 TGCTGCAAGATACTCCCTCTG 59.516 52.381 0.00 0.00 34.07 3.35
3951 5282 1.484240 GCTGCAAGATACTCCCTCTGT 59.516 52.381 0.00 0.00 34.07 3.41
3952 5283 2.482839 GCTGCAAGATACTCCCTCTGTC 60.483 54.545 0.00 0.00 34.07 3.51
3953 5284 2.102252 CTGCAAGATACTCCCTCTGTCC 59.898 54.545 0.00 0.00 34.07 4.02
3954 5285 1.414550 GCAAGATACTCCCTCTGTCCC 59.585 57.143 0.00 0.00 0.00 4.46
3955 5286 2.752030 CAAGATACTCCCTCTGTCCCA 58.248 52.381 0.00 0.00 0.00 4.37
3956 5287 3.312890 CAAGATACTCCCTCTGTCCCAT 58.687 50.000 0.00 0.00 0.00 4.00
3957 5288 4.483950 CAAGATACTCCCTCTGTCCCATA 58.516 47.826 0.00 0.00 0.00 2.74
3958 5289 4.834406 AGATACTCCCTCTGTCCCATAA 57.166 45.455 0.00 0.00 0.00 1.90
3959 5290 5.361630 AGATACTCCCTCTGTCCCATAAT 57.638 43.478 0.00 0.00 0.00 1.28
3960 5291 6.485388 AGATACTCCCTCTGTCCCATAATA 57.515 41.667 0.00 0.00 0.00 0.98
3961 5292 7.062584 AGATACTCCCTCTGTCCCATAATAT 57.937 40.000 0.00 0.00 0.00 1.28
3962 5293 8.188501 AGATACTCCCTCTGTCCCATAATATA 57.811 38.462 0.00 0.00 0.00 0.86
3963 5294 8.633724 AGATACTCCCTCTGTCCCATAATATAA 58.366 37.037 0.00 0.00 0.00 0.98
3964 5295 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
3965 5296 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3966 5297 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3967 5298 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
3968 5299 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
3969 5300 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
3970 5301 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
3971 5302 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
3972 5303 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
3973 5304 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
3974 5305 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
3975 5306 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
3976 5307 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3977 5308 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3978 5309 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3985 5316 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
3986 5317 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
3987 5318 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
4002 5333 8.707938 ACTAGTGTAGTGTTAAAAACGTTCTT 57.292 30.769 0.00 0.00 37.69 2.52
4003 5334 9.801873 ACTAGTGTAGTGTTAAAAACGTTCTTA 57.198 29.630 0.00 0.00 37.69 2.10
4016 5347 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4017 5348 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4018 5349 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4019 5350 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4020 5351 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4021 5352 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4022 5353 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4023 5354 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4024 5355 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4025 5356 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
4080 5425 4.741928 AAAGGGTGGTAGGAAGAAATGT 57.258 40.909 0.00 0.00 0.00 2.71
4086 5431 6.011981 AGGGTGGTAGGAAGAAATGTATTCAA 60.012 38.462 0.00 0.00 0.00 2.69
4110 5455 2.571653 CACCCAGACAATTACTCCCTCA 59.428 50.000 0.00 0.00 0.00 3.86
4122 5467 7.775561 ACAATTACTCCCTCAGTTCCATAATTC 59.224 37.037 0.00 0.00 36.43 2.17
4158 5503 9.840427 CTAAAACCACGACAAGAATTATGAAAT 57.160 29.630 0.00 0.00 0.00 2.17
4180 5533 3.954904 TGGAGAGAGTACATAGGTGCTTC 59.045 47.826 0.00 0.39 40.28 3.86
4190 5543 3.270027 CATAGGTGCTTCGGATTGTTCA 58.730 45.455 0.00 0.00 0.00 3.18
4203 5556 7.789341 TCGGATTGTTCAATGAAAAATAACG 57.211 32.000 20.23 20.23 30.55 3.18
4250 5624 7.564793 TGACTAGTTCACTGGCATACATAATT 58.435 34.615 0.00 0.00 0.00 1.40
4251 5625 7.710907 TGACTAGTTCACTGGCATACATAATTC 59.289 37.037 0.00 0.00 0.00 2.17
4382 5764 2.033448 ATCAGCGGCCCAAACGAA 59.967 55.556 0.00 0.00 0.00 3.85
4476 5864 4.139420 CGTTCGCCGCAGCTTCAG 62.139 66.667 0.00 0.00 36.60 3.02
4556 5944 3.322828 GCCCGGTATACAACTTCAGGATA 59.677 47.826 5.01 0.00 0.00 2.59
4574 5966 8.538409 TCAGGATAATTCATACAACATCATCG 57.462 34.615 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.612066 TGCAATGTGATTTATAAGATAGTGTCA 57.388 29.630 0.00 0.00 0.00 3.58
94 95 8.944029 CCCTCTGCAATGTGATTTATAAGATAG 58.056 37.037 0.00 0.00 0.00 2.08
170 173 7.485913 GCCATCAACAAAACATGTATAGTTCTG 59.514 37.037 0.00 4.52 42.99 3.02
176 179 5.359576 GGAGGCCATCAACAAAACATGTATA 59.640 40.000 5.01 0.00 42.99 1.47
305 310 3.684908 TGATTCCATTGAAAAGCTCCGA 58.315 40.909 0.00 0.00 33.32 4.55
307 312 5.359009 TCAGATGATTCCATTGAAAAGCTCC 59.641 40.000 0.00 0.00 33.32 4.70
310 315 6.869913 TGTTTCAGATGATTCCATTGAAAAGC 59.130 34.615 0.00 0.00 39.08 3.51
311 316 8.997621 ATGTTTCAGATGATTCCATTGAAAAG 57.002 30.769 0.00 0.00 39.08 2.27
319 324 5.748402 AGTGCTATGTTTCAGATGATTCCA 58.252 37.500 0.00 0.00 0.00 3.53
320 325 6.690194 AAGTGCTATGTTTCAGATGATTCC 57.310 37.500 0.00 0.00 0.00 3.01
321 326 8.976986 AAAAAGTGCTATGTTTCAGATGATTC 57.023 30.769 0.00 0.00 0.00 2.52
324 329 7.665559 AGGTAAAAAGTGCTATGTTTCAGATGA 59.334 33.333 0.00 0.00 0.00 2.92
328 333 6.431234 AGGAGGTAAAAAGTGCTATGTTTCAG 59.569 38.462 0.00 0.00 0.00 3.02
355 360 0.725117 CCTAACAAAGCCTTACGCGG 59.275 55.000 12.47 0.00 44.76 6.46
391 398 5.045215 CGCATGAAAGTTAATGGCATGAAT 58.955 37.500 0.00 0.00 38.82 2.57
392 399 4.157472 TCGCATGAAAGTTAATGGCATGAA 59.843 37.500 0.00 0.00 38.82 2.57
398 405 4.155826 TCAGGTTCGCATGAAAGTTAATGG 59.844 41.667 0.00 0.00 34.74 3.16
399 406 5.295431 TCAGGTTCGCATGAAAGTTAATG 57.705 39.130 0.00 0.00 34.74 1.90
413 420 3.624326 TGATTTGTTGCTTCAGGTTCG 57.376 42.857 0.00 0.00 0.00 3.95
457 464 9.249457 GCAAAAGATATTTTTGGGAGCTTATAC 57.751 33.333 17.29 0.00 39.19 1.47
477 484 5.812642 AGTGGAGATGAATAGTACGCAAAAG 59.187 40.000 0.00 0.00 0.00 2.27
484 491 4.740695 GCGTTGAGTGGAGATGAATAGTAC 59.259 45.833 0.00 0.00 0.00 2.73
487 494 4.052159 AGCGTTGAGTGGAGATGAATAG 57.948 45.455 0.00 0.00 0.00 1.73
490 497 2.037121 TCAAGCGTTGAGTGGAGATGAA 59.963 45.455 0.00 0.00 34.08 2.57
549 556 0.950836 CAATCACAGGTTGGTTCGCA 59.049 50.000 0.00 0.00 0.00 5.10
550 557 0.240945 CCAATCACAGGTTGGTTCGC 59.759 55.000 0.85 0.00 40.94 4.70
552 559 2.493278 CCATCCAATCACAGGTTGGTTC 59.507 50.000 8.75 0.00 45.05 3.62
554 561 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
556 563 3.696051 CCTAACCATCCAATCACAGGTTG 59.304 47.826 0.00 0.00 42.19 3.77
557 564 3.591527 TCCTAACCATCCAATCACAGGTT 59.408 43.478 0.00 0.00 44.23 3.50
558 565 3.189606 TCCTAACCATCCAATCACAGGT 58.810 45.455 0.00 0.00 0.00 4.00
559 566 3.434167 CCTCCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
562 569 3.199946 TGTCCTCCTAACCATCCAATCAC 59.800 47.826 0.00 0.00 0.00 3.06
563 570 3.455910 CTGTCCTCCTAACCATCCAATCA 59.544 47.826 0.00 0.00 0.00 2.57
570 928 5.721225 AGATATCACTGTCCTCCTAACCAT 58.279 41.667 5.32 0.00 0.00 3.55
574 932 5.303078 GCTGAAGATATCACTGTCCTCCTAA 59.697 44.000 5.32 0.00 33.47 2.69
575 933 4.830046 GCTGAAGATATCACTGTCCTCCTA 59.170 45.833 5.32 0.00 33.47 2.94
579 937 4.099266 GTGAGCTGAAGATATCACTGTCCT 59.901 45.833 5.32 0.00 39.15 3.85
580 938 4.367450 GTGAGCTGAAGATATCACTGTCC 58.633 47.826 5.32 1.27 39.15 4.02
583 941 4.397481 TGGTGAGCTGAAGATATCACTG 57.603 45.455 5.32 4.30 41.40 3.66
586 944 3.776969 ACCTTGGTGAGCTGAAGATATCA 59.223 43.478 5.32 0.00 36.38 2.15
587 945 4.414337 ACCTTGGTGAGCTGAAGATATC 57.586 45.455 0.00 0.00 0.00 1.63
588 946 4.225942 TGAACCTTGGTGAGCTGAAGATAT 59.774 41.667 0.00 0.00 0.00 1.63
589 947 3.582647 TGAACCTTGGTGAGCTGAAGATA 59.417 43.478 0.00 0.00 0.00 1.98
591 949 1.768275 TGAACCTTGGTGAGCTGAAGA 59.232 47.619 0.00 0.00 0.00 2.87
593 951 2.092429 ACTTGAACCTTGGTGAGCTGAA 60.092 45.455 0.00 0.00 0.00 3.02
594 952 1.490490 ACTTGAACCTTGGTGAGCTGA 59.510 47.619 0.00 0.00 0.00 4.26
595 953 1.876156 GACTTGAACCTTGGTGAGCTG 59.124 52.381 0.00 0.00 0.00 4.24
597 955 1.202818 AGGACTTGAACCTTGGTGAGC 60.203 52.381 0.00 0.00 33.55 4.26
598 956 2.938956 AGGACTTGAACCTTGGTGAG 57.061 50.000 0.00 0.00 33.55 3.51
599 957 3.323979 GTCTAGGACTTGAACCTTGGTGA 59.676 47.826 0.00 0.00 38.76 4.02
600 958 3.325135 AGTCTAGGACTTGAACCTTGGTG 59.675 47.826 0.00 0.00 40.28 4.17
613 971 2.271800 CGCCAATGTCAAGTCTAGGAC 58.728 52.381 0.00 0.00 34.63 3.85
614 972 1.405526 GCGCCAATGTCAAGTCTAGGA 60.406 52.381 0.00 0.00 0.00 2.94
615 973 1.009829 GCGCCAATGTCAAGTCTAGG 58.990 55.000 0.00 0.00 0.00 3.02
616 974 1.929836 GAGCGCCAATGTCAAGTCTAG 59.070 52.381 2.29 0.00 0.00 2.43
617 975 1.735700 CGAGCGCCAATGTCAAGTCTA 60.736 52.381 2.29 0.00 0.00 2.59
618 976 1.016130 CGAGCGCCAATGTCAAGTCT 61.016 55.000 2.29 0.00 0.00 3.24
619 977 1.421485 CGAGCGCCAATGTCAAGTC 59.579 57.895 2.29 0.00 0.00 3.01
620 978 2.680913 GCGAGCGCCAATGTCAAGT 61.681 57.895 2.29 0.00 34.56 3.16
621 979 1.985447 ATGCGAGCGCCAATGTCAAG 61.985 55.000 12.70 0.00 41.09 3.02
625 983 1.024271 AATAATGCGAGCGCCAATGT 58.976 45.000 12.70 0.00 41.09 2.71
626 984 2.124011 AAATAATGCGAGCGCCAATG 57.876 45.000 12.70 0.00 41.09 2.82
628 986 1.468908 CCAAAATAATGCGAGCGCCAA 60.469 47.619 12.70 0.00 41.09 4.52
629 987 0.100325 CCAAAATAATGCGAGCGCCA 59.900 50.000 12.70 0.00 41.09 5.69
631 989 2.405892 ATCCAAAATAATGCGAGCGC 57.594 45.000 8.08 8.08 42.35 5.92
632 990 6.991485 AATAAATCCAAAATAATGCGAGCG 57.009 33.333 0.00 0.00 0.00 5.03
648 1006 3.807622 TCGTCGGAAGCATGGAATAAATC 59.192 43.478 0.00 0.00 0.00 2.17
649 1007 3.804036 TCGTCGGAAGCATGGAATAAAT 58.196 40.909 0.00 0.00 0.00 1.40
651 1009 2.971660 TCGTCGGAAGCATGGAATAA 57.028 45.000 0.00 0.00 0.00 1.40
652 1010 2.102420 ACATCGTCGGAAGCATGGAATA 59.898 45.455 0.00 0.00 0.00 1.75
653 1011 1.134401 ACATCGTCGGAAGCATGGAAT 60.134 47.619 0.00 0.00 0.00 3.01
654 1012 0.249120 ACATCGTCGGAAGCATGGAA 59.751 50.000 0.00 0.00 0.00 3.53
655 1013 0.249120 AACATCGTCGGAAGCATGGA 59.751 50.000 0.00 0.00 0.00 3.41
656 1014 0.652592 GAACATCGTCGGAAGCATGG 59.347 55.000 0.00 0.00 0.00 3.66
657 1015 0.298707 CGAACATCGTCGGAAGCATG 59.701 55.000 0.00 0.00 37.37 4.06
659 1017 4.162640 CGAACATCGTCGGAAGCA 57.837 55.556 0.00 0.00 37.37 3.91
668 1026 1.350193 CTCCCACTGAACGAACATCG 58.650 55.000 0.00 0.00 46.93 3.84
669 1027 1.275291 TCCTCCCACTGAACGAACATC 59.725 52.381 0.00 0.00 0.00 3.06
670 1028 1.276421 CTCCTCCCACTGAACGAACAT 59.724 52.381 0.00 0.00 0.00 2.71
672 1030 0.966920 TCTCCTCCCACTGAACGAAC 59.033 55.000 0.00 0.00 0.00 3.95
674 1032 1.241990 CGTCTCCTCCCACTGAACGA 61.242 60.000 0.00 0.00 0.00 3.85
675 1033 1.213013 CGTCTCCTCCCACTGAACG 59.787 63.158 0.00 0.00 0.00 3.95
676 1034 0.680061 AACGTCTCCTCCCACTGAAC 59.320 55.000 0.00 0.00 0.00 3.18
677 1035 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
678 1036 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
679 1037 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
680 1038 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
708 1066 3.575351 AAGTCACGACAGGCGCCTC 62.575 63.158 30.29 16.70 46.04 4.70
709 1067 3.575351 GAAGTCACGACAGGCGCCT 62.575 63.158 27.08 27.08 46.04 5.52
710 1068 3.112709 GAAGTCACGACAGGCGCC 61.113 66.667 21.89 21.89 46.04 6.53
711 1069 0.457853 TATGAAGTCACGACAGGCGC 60.458 55.000 0.00 0.00 46.04 6.53
713 1071 4.631813 AGATTTTATGAAGTCACGACAGGC 59.368 41.667 0.00 0.00 0.00 4.85
714 1072 5.869344 TGAGATTTTATGAAGTCACGACAGG 59.131 40.000 0.00 0.00 0.00 4.00
716 1074 7.151976 TCTTGAGATTTTATGAAGTCACGACA 58.848 34.615 0.00 0.00 0.00 4.35
717 1075 7.582435 TCTTGAGATTTTATGAAGTCACGAC 57.418 36.000 0.00 0.00 0.00 4.34
718 1076 7.201556 GCATCTTGAGATTTTATGAAGTCACGA 60.202 37.037 0.00 0.00 31.21 4.35
719 1077 6.904011 GCATCTTGAGATTTTATGAAGTCACG 59.096 38.462 0.00 0.00 31.21 4.35
721 1079 9.842775 ATAGCATCTTGAGATTTTATGAAGTCA 57.157 29.630 0.00 0.00 31.21 3.41
723 1081 8.566260 GCATAGCATCTTGAGATTTTATGAAGT 58.434 33.333 17.39 0.00 33.98 3.01
724 1082 8.021973 GGCATAGCATCTTGAGATTTTATGAAG 58.978 37.037 17.39 0.00 33.98 3.02
725 1083 7.308169 CGGCATAGCATCTTGAGATTTTATGAA 60.308 37.037 17.39 0.00 33.98 2.57
726 1084 6.148315 CGGCATAGCATCTTGAGATTTTATGA 59.852 38.462 17.39 0.00 33.98 2.15
727 1085 6.312487 CGGCATAGCATCTTGAGATTTTATG 58.688 40.000 12.67 12.67 34.57 1.90
729 1087 4.756642 CCGGCATAGCATCTTGAGATTTTA 59.243 41.667 0.00 0.00 31.21 1.52
730 1088 3.567164 CCGGCATAGCATCTTGAGATTTT 59.433 43.478 0.00 0.00 31.21 1.82
731 1089 3.144506 CCGGCATAGCATCTTGAGATTT 58.855 45.455 0.00 0.00 31.21 2.17
732 1090 2.775890 CCGGCATAGCATCTTGAGATT 58.224 47.619 0.00 0.00 31.21 2.40
733 1091 1.610102 GCCGGCATAGCATCTTGAGAT 60.610 52.381 24.80 0.00 34.56 2.75
735 1093 0.250209 AGCCGGCATAGCATCTTGAG 60.250 55.000 31.54 0.00 0.00 3.02
736 1094 0.250038 GAGCCGGCATAGCATCTTGA 60.250 55.000 31.54 0.00 0.00 3.02
737 1095 0.533531 TGAGCCGGCATAGCATCTTG 60.534 55.000 31.54 0.00 0.00 3.02
738 1096 0.250209 CTGAGCCGGCATAGCATCTT 60.250 55.000 31.54 3.33 0.00 2.40
739 1097 1.370437 CTGAGCCGGCATAGCATCT 59.630 57.895 31.54 4.27 0.00 2.90
740 1098 1.670406 CCTGAGCCGGCATAGCATC 60.670 63.158 31.54 16.99 0.00 3.91
741 1099 2.429058 CCTGAGCCGGCATAGCAT 59.571 61.111 31.54 6.18 0.00 3.79
749 1107 3.423162 CTTCGAGAGCCTGAGCCGG 62.423 68.421 0.00 0.00 41.25 6.13
750 1108 2.103934 CTTCGAGAGCCTGAGCCG 59.896 66.667 0.00 0.00 41.25 5.52
751 1109 2.355193 ACCTTCGAGAGCCTGAGCC 61.355 63.158 0.00 0.00 41.25 4.70
752 1110 1.153667 CACCTTCGAGAGCCTGAGC 60.154 63.158 0.00 0.00 40.32 4.26
753 1111 1.153667 GCACCTTCGAGAGCCTGAG 60.154 63.158 0.00 0.00 0.00 3.35
754 1112 1.599606 GAGCACCTTCGAGAGCCTGA 61.600 60.000 0.00 0.00 0.00 3.86
755 1113 1.153667 GAGCACCTTCGAGAGCCTG 60.154 63.158 0.00 0.00 0.00 4.85
756 1114 0.975040 ATGAGCACCTTCGAGAGCCT 60.975 55.000 0.00 0.00 0.00 4.58
757 1115 0.747255 TATGAGCACCTTCGAGAGCC 59.253 55.000 0.00 0.00 0.00 4.70
760 1118 2.302260 CTCCTATGAGCACCTTCGAGA 58.698 52.381 0.00 0.00 0.00 4.04
762 1120 2.145397 ACTCCTATGAGCACCTTCGA 57.855 50.000 0.00 0.00 42.74 3.71
763 1121 2.969628 AACTCCTATGAGCACCTTCG 57.030 50.000 0.00 0.00 42.74 3.79
808 1574 5.227908 TCAAGTATTCGCTCGAAAAGTTCT 58.772 37.500 8.84 1.58 37.69 3.01
811 1577 3.368236 GCTCAAGTATTCGCTCGAAAAGT 59.632 43.478 8.84 0.00 37.69 2.66
812 1578 3.242123 GGCTCAAGTATTCGCTCGAAAAG 60.242 47.826 8.84 2.34 37.69 2.27
817 1597 2.656085 CTAGGCTCAAGTATTCGCTCG 58.344 52.381 0.00 0.00 0.00 5.03
818 1598 2.223829 TGCTAGGCTCAAGTATTCGCTC 60.224 50.000 0.00 0.00 0.00 5.03
819 1599 1.757118 TGCTAGGCTCAAGTATTCGCT 59.243 47.619 0.00 0.00 0.00 4.93
821 1601 3.376540 GAGTGCTAGGCTCAAGTATTCG 58.623 50.000 0.00 0.00 33.45 3.34
838 1618 2.943033 CCTGGGCCTAAATAAACGAGTG 59.057 50.000 4.53 0.00 0.00 3.51
931 1711 2.593436 AAGCGTTCGGTTGGTGGG 60.593 61.111 8.78 0.00 0.00 4.61
963 1743 3.065371 AGAGAGCTTGTTCGGTTTGTTTG 59.935 43.478 0.00 0.00 0.00 2.93
967 1747 1.801178 GGAGAGAGCTTGTTCGGTTTG 59.199 52.381 0.00 0.00 0.00 2.93
1063 1843 1.689892 GGAGGAGGAGGTTGTAGAGGG 60.690 61.905 0.00 0.00 0.00 4.30
1065 1845 2.661718 GAGGAGGAGGAGGTTGTAGAG 58.338 57.143 0.00 0.00 0.00 2.43
1071 1851 1.306568 GCAGGAGGAGGAGGAGGTT 60.307 63.158 0.00 0.00 0.00 3.50
1074 1854 1.457455 GAGGCAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1075 1855 2.693017 GAGGCAGGAGGAGGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
1076 1856 2.837291 CGAGGCAGGAGGAGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
1077 1857 2.837291 CCGAGGCAGGAGGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
1392 2176 2.223782 GCATCAAACTGTTGCCTGACAA 60.224 45.455 0.00 0.00 37.17 3.18
1394 2178 1.337703 TGCATCAAACTGTTGCCTGAC 59.662 47.619 7.12 0.00 41.14 3.51
1449 2248 7.749126 CGTTCATCCCAGAAACTTGTAAATTAC 59.251 37.037 0.00 0.00 0.00 1.89
1450 2249 7.662258 TCGTTCATCCCAGAAACTTGTAAATTA 59.338 33.333 0.00 0.00 0.00 1.40
1471 2399 4.734108 GCATTGTACTCCTAGTCCTCGTTC 60.734 50.000 0.00 0.00 0.00 3.95
1511 2440 3.194005 TGTTTCAGTGACTCCAGAACC 57.806 47.619 0.00 0.00 0.00 3.62
1559 2488 0.032615 TAAATGTGGGCATGGTCCCC 60.033 55.000 5.99 3.11 45.97 4.81
1560 2489 1.480545 GTTAAATGTGGGCATGGTCCC 59.519 52.381 1.53 1.53 46.73 4.46
1573 2502 9.683069 GGCAGATGGTTAAATAGATGTTAAATG 57.317 33.333 0.00 0.00 0.00 2.32
1583 2512 4.103153 TCAGAGGGGCAGATGGTTAAATAG 59.897 45.833 0.00 0.00 0.00 1.73
1642 2590 5.954752 TCCATATGGATTAGTTTGCCAACAA 59.045 36.000 20.98 0.00 39.78 2.83
1658 2606 8.064222 GCGTCGAATGATTAATTATCCATATGG 58.936 37.037 16.25 16.25 31.87 2.74
1660 2608 8.948631 AGCGTCGAATGATTAATTATCCATAT 57.051 30.769 0.00 0.00 31.87 1.78
1675 2623 3.186909 TGAGGTAATCAAGCGTCGAATG 58.813 45.455 0.00 0.00 34.02 2.67
1681 2629 2.180276 ACTCCTGAGGTAATCAAGCGT 58.820 47.619 0.00 0.00 37.52 5.07
1683 2631 4.327680 ACAAACTCCTGAGGTAATCAAGC 58.672 43.478 0.00 0.00 37.52 4.01
1693 2641 4.202141 TGCATGGAAAAACAAACTCCTGAG 60.202 41.667 0.00 0.00 0.00 3.35
1694 2642 3.703556 TGCATGGAAAAACAAACTCCTGA 59.296 39.130 0.00 0.00 0.00 3.86
1767 2715 6.219473 ACTGTCGGATTCATGTAATCATCTC 58.781 40.000 15.30 7.09 45.05 2.75
1769 2717 6.851222 AACTGTCGGATTCATGTAATCATC 57.149 37.500 15.30 8.44 45.05 2.92
1771 2719 7.496747 TGATAACTGTCGGATTCATGTAATCA 58.503 34.615 15.30 0.00 45.05 2.57
1952 2904 9.822185 AGAAGTGCAATACAAGAAAGAAAAATT 57.178 25.926 0.00 0.00 0.00 1.82
1972 2924 5.762218 AGAATGTTCAGGTTCAGAAGAAGTG 59.238 40.000 0.00 0.00 33.63 3.16
2087 3039 4.777896 AGCTGAGACAAATAGAGGTACCAA 59.222 41.667 15.94 0.00 0.00 3.67
2173 3125 0.955428 TGTGACAAATCTGCCGAGCC 60.955 55.000 0.00 0.00 0.00 4.70
2305 3258 2.235650 TGCTTCTTCCCACTCAGATCTG 59.764 50.000 17.07 17.07 0.00 2.90
2426 3379 4.330894 TGCTGACATGAATCGAGCTAAAAG 59.669 41.667 0.00 0.00 0.00 2.27
2440 3393 9.803130 CGTATAAATAAGAAGAATGCTGACATG 57.197 33.333 0.00 0.00 36.36 3.21
2491 3446 4.934001 AGTCTGCACAGATTCTACACAATG 59.066 41.667 3.24 0.00 39.97 2.82
2492 3447 5.157940 AGTCTGCACAGATTCTACACAAT 57.842 39.130 3.24 0.00 39.97 2.71
2510 3473 3.823304 GGAGCCAACAAAATCTTGAGTCT 59.177 43.478 0.00 0.00 36.33 3.24
2579 3542 3.909732 TCAGGTGGACAAATGAAACCTT 58.090 40.909 0.00 0.00 39.24 3.50
2710 3673 3.197766 TCATGGCTTCTTCCGTATCTTGT 59.802 43.478 0.00 0.00 0.00 3.16
2754 3717 8.960591 CCAACTTTATCTCTTCCAACATAACAT 58.039 33.333 0.00 0.00 0.00 2.71
2755 3718 8.160765 TCCAACTTTATCTCTTCCAACATAACA 58.839 33.333 0.00 0.00 0.00 2.41
2756 3719 8.451748 GTCCAACTTTATCTCTTCCAACATAAC 58.548 37.037 0.00 0.00 0.00 1.89
2782 3745 2.738846 CGTCAACCTTTCTGATGGACTG 59.261 50.000 4.55 2.52 0.00 3.51
2798 3761 2.110753 TCATATCCCCCATCCGTCAA 57.889 50.000 0.00 0.00 0.00 3.18
2803 3766 6.353429 CCTTAGAATCTTCATATCCCCCATCC 60.353 46.154 0.00 0.00 0.00 3.51
2830 3793 5.708230 TCTTTTTCGGGCATACAAACAGTAT 59.292 36.000 0.00 0.00 44.20 2.12
3140 4104 3.435026 GGAGTTGCCCATAGCCTTAATGA 60.435 47.826 0.00 0.00 42.71 2.57
3169 4133 1.951602 TGACTGAAGGACTTTCGACGA 59.048 47.619 0.00 0.00 38.71 4.20
3348 4312 2.497675 TGCTCCACATCTACTCTCCAAC 59.502 50.000 0.00 0.00 0.00 3.77
3395 4359 3.071892 ACACTATGGAACCGGAGAAACAA 59.928 43.478 9.46 0.00 0.00 2.83
3422 4386 2.746472 GCTGATCCTGGGTACAATCCAC 60.746 54.545 0.00 0.00 0.00 4.02
3538 4502 9.176181 GAAAGCTCATTAATCAAACGTTTACAA 57.824 29.630 14.20 5.80 0.00 2.41
3610 4941 3.613432 GCAATTCCAAAGAGCACTCAAGG 60.613 47.826 0.00 0.00 0.00 3.61
3630 4961 5.456548 TCATGCTTTTTGAGAATTCTGCA 57.543 34.783 14.00 15.02 0.00 4.41
3650 4981 3.075882 ACCAAAATCTTCCCATCACCTCA 59.924 43.478 0.00 0.00 0.00 3.86
3680 5011 2.421424 CCCCGCAGAAAAAGAAGAGATG 59.579 50.000 0.00 0.00 0.00 2.90
3681 5012 2.619074 CCCCCGCAGAAAAAGAAGAGAT 60.619 50.000 0.00 0.00 0.00 2.75
3682 5013 1.271379 CCCCCGCAGAAAAAGAAGAGA 60.271 52.381 0.00 0.00 0.00 3.10
3684 5015 0.768622 TCCCCCGCAGAAAAAGAAGA 59.231 50.000 0.00 0.00 0.00 2.87
3686 5017 2.074729 TTTCCCCCGCAGAAAAAGAA 57.925 45.000 0.00 0.00 30.48 2.52
3687 5018 2.074729 TTTTCCCCCGCAGAAAAAGA 57.925 45.000 3.80 0.00 39.58 2.52
3688 5019 2.900716 TTTTTCCCCCGCAGAAAAAG 57.099 45.000 11.72 0.00 44.25 2.27
3705 5036 6.187727 TGGTTAGACTCCATCTCTGTTTTT 57.812 37.500 0.00 0.00 39.04 1.94
3706 5037 5.825593 TGGTTAGACTCCATCTCTGTTTT 57.174 39.130 0.00 0.00 39.04 2.43
3707 5038 5.825593 TTGGTTAGACTCCATCTCTGTTT 57.174 39.130 0.00 0.00 39.04 2.83
3708 5039 5.825593 TTTGGTTAGACTCCATCTCTGTT 57.174 39.130 0.00 0.00 39.04 3.16
3709 5040 5.825593 TTTTGGTTAGACTCCATCTCTGT 57.174 39.130 0.00 0.00 39.04 3.41
3710 5041 6.648192 AGATTTTGGTTAGACTCCATCTCTG 58.352 40.000 0.00 0.00 39.04 3.35
3711 5042 6.882768 AGATTTTGGTTAGACTCCATCTCT 57.117 37.500 0.00 0.00 39.04 3.10
3712 5043 6.540551 GGAAGATTTTGGTTAGACTCCATCTC 59.459 42.308 0.00 0.00 39.04 2.75
3713 5044 6.012508 TGGAAGATTTTGGTTAGACTCCATCT 60.013 38.462 0.00 0.00 41.95 2.90
3714 5045 6.180472 TGGAAGATTTTGGTTAGACTCCATC 58.820 40.000 0.00 0.00 34.75 3.51
3715 5046 6.139679 TGGAAGATTTTGGTTAGACTCCAT 57.860 37.500 0.00 0.00 34.75 3.41
3716 5047 5.576563 TGGAAGATTTTGGTTAGACTCCA 57.423 39.130 0.00 0.00 0.00 3.86
3717 5048 6.418946 AGATGGAAGATTTTGGTTAGACTCC 58.581 40.000 0.00 0.00 0.00 3.85
3718 5049 6.256757 CGAGATGGAAGATTTTGGTTAGACTC 59.743 42.308 0.00 0.00 0.00 3.36
3719 5050 6.109359 CGAGATGGAAGATTTTGGTTAGACT 58.891 40.000 0.00 0.00 0.00 3.24
3720 5051 5.294552 CCGAGATGGAAGATTTTGGTTAGAC 59.705 44.000 0.00 0.00 42.00 2.59
3721 5052 5.428253 CCGAGATGGAAGATTTTGGTTAGA 58.572 41.667 0.00 0.00 42.00 2.10
3722 5053 4.035675 GCCGAGATGGAAGATTTTGGTTAG 59.964 45.833 0.00 0.00 42.00 2.34
3723 5054 3.945285 GCCGAGATGGAAGATTTTGGTTA 59.055 43.478 0.00 0.00 42.00 2.85
3724 5055 2.755103 GCCGAGATGGAAGATTTTGGTT 59.245 45.455 0.00 0.00 42.00 3.67
3725 5056 2.025887 AGCCGAGATGGAAGATTTTGGT 60.026 45.455 0.00 0.00 42.00 3.67
3726 5057 2.357009 CAGCCGAGATGGAAGATTTTGG 59.643 50.000 0.00 0.00 42.00 3.28
3727 5058 3.273434 TCAGCCGAGATGGAAGATTTTG 58.727 45.455 0.00 0.00 42.00 2.44
3728 5059 3.634397 TCAGCCGAGATGGAAGATTTT 57.366 42.857 0.00 0.00 42.00 1.82
3729 5060 3.474600 CATCAGCCGAGATGGAAGATTT 58.525 45.455 4.04 0.00 41.29 2.17
3730 5061 3.123157 CATCAGCCGAGATGGAAGATT 57.877 47.619 4.04 0.00 41.29 2.40
3731 5062 2.835580 CATCAGCCGAGATGGAAGAT 57.164 50.000 4.04 0.00 41.29 2.40
3732 5063 3.181475 GTTACATCAGCCGAGATGGAAGA 60.181 47.826 13.79 0.00 46.57 2.87
3733 5064 3.126831 GTTACATCAGCCGAGATGGAAG 58.873 50.000 13.79 0.00 46.57 3.46
3760 5091 3.706373 AGTACTGCCTGCCCGTGG 61.706 66.667 0.00 0.00 0.00 4.94
3772 5103 1.045407 TGGAACACTTCGGCAGTACT 58.955 50.000 0.00 0.00 32.76 2.73
3855 5186 6.237569 GCCAAACGACTTTGAAAAAGAAGAAG 60.238 38.462 6.73 0.00 39.43 2.85
3856 5187 5.575218 GCCAAACGACTTTGAAAAAGAAGAA 59.425 36.000 6.73 0.00 39.43 2.52
3889 5220 2.814336 GCCAAAAACAACAACCCAAACA 59.186 40.909 0.00 0.00 0.00 2.83
3895 5226 2.414825 CACACAGCCAAAAACAACAACC 59.585 45.455 0.00 0.00 0.00 3.77
3950 5281 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3951 5282 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3952 5283 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3958 5289 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
3959 5290 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
3960 5291 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
3961 5292 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
3962 5293 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
3963 5294 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
3964 5295 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
3977 5308 8.707938 AAGAACGTTTTTAACACTACACTAGT 57.292 30.769 0.46 0.00 40.28 2.57
3990 5321 9.044150 CCGTCCCATAATATAAGAACGTTTTTA 57.956 33.333 13.02 13.02 0.00 1.52
3991 5322 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3992 5323 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3993 5324 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3994 5325 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3995 5326 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3996 5327 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3997 5328 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3998 5329 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3999 5330 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4000 5331 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4001 5332 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4002 5333 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4003 5334 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4004 5335 4.140853 ACTTACTCCCTCCGTCCCATAATA 60.141 45.833 0.00 0.00 0.00 0.98
4005 5336 3.240302 CTTACTCCCTCCGTCCCATAAT 58.760 50.000 0.00 0.00 0.00 1.28
4006 5337 2.023695 ACTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
4007 5338 1.572415 ACTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
4008 5339 0.338814 ACTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4009 5340 0.115745 AACTTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4010 5341 1.273759 AAACTTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
4011 5342 3.413846 AAAAACTTACTCCCTCCGTCC 57.586 47.619 0.00 0.00 0.00 4.79
4012 5343 6.866010 TTTTAAAAACTTACTCCCTCCGTC 57.134 37.500 0.00 0.00 0.00 4.79
4079 5424 5.722021 AATTGTCTGGGTGGTTTGAATAC 57.278 39.130 0.00 0.00 0.00 1.89
4080 5425 6.548321 AGTAATTGTCTGGGTGGTTTGAATA 58.452 36.000 0.00 0.00 0.00 1.75
4086 5431 2.041216 GGGAGTAATTGTCTGGGTGGTT 59.959 50.000 0.00 0.00 0.00 3.67
4122 5467 7.486551 TCTTGTCGTGGTTTTAGTTCAAATTTG 59.513 33.333 12.15 12.15 0.00 2.32
4142 5487 8.729805 ACTCTCTCCATTTCATAATTCTTGTC 57.270 34.615 0.00 0.00 0.00 3.18
4158 5503 3.671740 AGCACCTATGTACTCTCTCCA 57.328 47.619 0.00 0.00 0.00 3.86
4180 5533 7.789341 TCGTTATTTTTCATTGAACAATCCG 57.211 32.000 12.75 14.89 0.00 4.18
4203 5556 0.653636 TTTGCCGTGACACGTCTTTC 59.346 50.000 25.18 10.07 40.58 2.62
4210 5563 1.512926 AGTCAGATTTGCCGTGACAC 58.487 50.000 4.65 0.00 42.59 3.67
4212 5565 2.960819 ACTAGTCAGATTTGCCGTGAC 58.039 47.619 0.00 0.00 40.82 3.67
4217 5570 3.686726 CCAGTGAACTAGTCAGATTTGCC 59.313 47.826 0.00 0.00 36.74 4.52
4250 5624 5.715279 ACTGCTTGTGTTAGGACTACTATGA 59.285 40.000 0.00 0.00 0.00 2.15
4251 5625 5.967088 ACTGCTTGTGTTAGGACTACTATG 58.033 41.667 0.00 0.00 0.00 2.23
4301 5679 8.716646 TCTACAATAATGTTTCGTGATCATGT 57.283 30.769 14.52 5.25 41.05 3.21
4496 5884 0.588252 CAGCTGTGAACTTGGTTCGG 59.412 55.000 5.25 1.38 44.55 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.