Multiple sequence alignment - TraesCS2D01G457800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G457800 chr2D 100.000 6119 0 0 1 6119 565150468 565144350 0.000000e+00 11300.0
1 TraesCS2D01G457800 chr2D 90.560 1822 143 17 1094 2905 565097995 565099797 0.000000e+00 2385.0
2 TraesCS2D01G457800 chr2D 98.261 1265 22 0 3473 4737 565063712 565062448 0.000000e+00 2215.0
3 TraesCS2D01G457800 chr2D 83.572 1814 232 38 1119 2905 577628185 577629959 0.000000e+00 1639.0
4 TraesCS2D01G457800 chr2D 84.480 567 67 13 3164 3715 565100048 565100608 1.940000e-149 540.0
5 TraesCS2D01G457800 chr2D 86.051 509 48 17 4242 4737 565101078 565101576 5.430000e-145 525.0
6 TraesCS2D01G457800 chr2D 87.004 454 36 12 3754 4187 565100610 565101060 1.980000e-134 490.0
7 TraesCS2D01G457800 chr2D 91.813 171 11 3 3422 3592 577630428 577630595 1.030000e-57 235.0
8 TraesCS2D01G457800 chr2D 93.846 65 4 0 3274 3338 577630352 577630416 1.400000e-16 99.0
9 TraesCS2D01G457800 chr2D 93.651 63 1 3 5763 5823 565144597 565144536 2.350000e-14 91.6
10 TraesCS2D01G457800 chr2D 93.651 63 1 3 5872 5933 565144706 565144646 2.350000e-14 91.6
11 TraesCS2D01G457800 chr2A 95.684 3939 111 12 1057 4972 705590397 705586495 0.000000e+00 6277.0
12 TraesCS2D01G457800 chr2A 89.482 1816 159 18 1094 2905 705539104 705540891 0.000000e+00 2266.0
13 TraesCS2D01G457800 chr2A 83.639 1742 223 38 1187 2905 715777176 715775474 0.000000e+00 1581.0
14 TraesCS2D01G457800 chr2A 91.596 1178 39 26 4980 6119 705586459 705585304 0.000000e+00 1572.0
15 TraesCS2D01G457800 chr2A 86.062 1026 94 26 3167 4154 705541228 705542242 0.000000e+00 1057.0
16 TraesCS2D01G457800 chr2A 87.830 493 46 7 267 755 705594285 705593803 3.200000e-157 566.0
17 TraesCS2D01G457800 chr2A 86.024 508 50 14 4242 4737 705542291 705542789 5.430000e-145 525.0
18 TraesCS2D01G457800 chr2A 91.500 200 14 3 5456 5654 39917613 39917416 7.820000e-69 272.0
19 TraesCS2D01G457800 chr2A 90.476 63 0 2 5872 5933 705585659 705585602 1.830000e-10 78.7
20 TraesCS2D01G457800 chr2B 95.910 2934 99 12 1030 3948 677017582 677014655 0.000000e+00 4734.0
21 TraesCS2D01G457800 chr2B 89.146 1815 170 14 1094 2902 676764459 676766252 0.000000e+00 2235.0
22 TraesCS2D01G457800 chr2B 83.133 1832 232 47 1112 2905 694777969 694776177 0.000000e+00 1600.0
23 TraesCS2D01G457800 chr2B 82.860 1832 236 48 1112 2905 694749262 694747471 0.000000e+00 1572.0
24 TraesCS2D01G457800 chr2B 82.652 1418 179 39 1519 2905 694699840 694698459 0.000000e+00 1194.0
25 TraesCS2D01G457800 chr2B 89.789 852 24 19 4063 4910 677014431 677013639 0.000000e+00 1033.0
26 TraesCS2D01G457800 chr2B 92.042 754 22 16 5395 6117 677012830 677012084 0.000000e+00 1026.0
27 TraesCS2D01G457800 chr2B 86.434 516 51 13 3269 3772 676766702 676767210 1.160000e-151 547.0
28 TraesCS2D01G457800 chr2B 85.294 510 49 17 4242 4737 676767714 676768211 2.550000e-138 503.0
29 TraesCS2D01G457800 chr2B 86.301 438 36 13 3769 4187 676767264 676767696 7.230000e-124 455.0
30 TraesCS2D01G457800 chr2B 95.156 289 8 1 4983 5271 677013255 677012973 9.350000e-123 451.0
31 TraesCS2D01G457800 chr2B 84.951 412 46 12 2505 2905 694605120 694604714 2.660000e-108 403.0
32 TraesCS2D01G457800 chr2B 90.955 199 17 1 5456 5654 227514620 227514423 3.640000e-67 267.0
33 TraesCS2D01G457800 chr2B 93.458 107 7 0 93 199 101081447 101081553 6.350000e-35 159.0
34 TraesCS2D01G457800 chr2B 98.462 65 1 0 4908 4972 677013360 677013296 1.390000e-21 115.0
35 TraesCS2D01G457800 chr2B 88.764 89 7 2 3074 3160 394723038 394722951 8.390000e-19 106.0
36 TraesCS2D01G457800 chr2B 93.846 65 4 0 3274 3338 694698056 694697992 1.400000e-16 99.0
37 TraesCS2D01G457800 chr2B 92.308 65 5 0 3274 3338 694745752 694745688 6.530000e-15 93.5
38 TraesCS2D01G457800 chr2B 92.308 65 5 0 3274 3338 694774459 694774395 6.530000e-15 93.5
39 TraesCS2D01G457800 chr2B 100.000 34 0 0 4925 4958 611194766 611194733 5.120000e-06 63.9
40 TraesCS2D01G457800 chr5B 84.615 1807 217 29 1117 2903 432707634 432709399 0.000000e+00 1740.0
41 TraesCS2D01G457800 chr5B 78.970 1417 174 58 3379 4737 432709982 432711332 0.000000e+00 852.0
42 TraesCS2D01G457800 chr5A 83.389 1192 170 12 1094 2268 467755265 467754085 0.000000e+00 1079.0
43 TraesCS2D01G457800 chr5A 80.049 1223 138 44 3369 4541 467741930 467740764 0.000000e+00 809.0
44 TraesCS2D01G457800 chr5A 89.941 338 24 5 4980 5314 688144998 688144668 1.580000e-115 427.0
45 TraesCS2D01G457800 chr5A 89.676 339 22 10 4980 5314 438152432 438152103 2.640000e-113 420.0
46 TraesCS2D01G457800 chr5A 89.213 343 23 7 4980 5318 609807730 609808062 3.410000e-112 416.0
47 TraesCS2D01G457800 chr5A 89.055 201 19 2 5456 5654 538863467 538863268 4.740000e-61 246.0
48 TraesCS2D01G457800 chr5A 85.586 111 16 0 645 755 611325618 611325508 3.880000e-22 117.0
49 TraesCS2D01G457800 chr5A 84.685 111 17 0 645 755 424243880 424243770 1.800000e-20 111.0
50 TraesCS2D01G457800 chr5A 83.784 111 18 0 645 755 260022409 260022299 8.390000e-19 106.0
51 TraesCS2D01G457800 chr5A 86.316 95 9 3 3076 3167 649230457 649230550 3.900000e-17 100.0
52 TraesCS2D01G457800 chr1D 90.588 340 18 7 4980 5315 267592634 267592305 7.280000e-119 438.0
53 TraesCS2D01G457800 chr3A 90.237 338 20 6 4981 5314 696064904 696065232 4.380000e-116 429.0
54 TraesCS2D01G457800 chr3A 84.211 114 16 2 643 755 732236810 732236922 6.480000e-20 110.0
55 TraesCS2D01G457800 chr3A 82.677 127 16 4 643 769 140803720 140803600 2.330000e-19 108.0
56 TraesCS2D01G457800 chr3A 87.356 87 8 2 3076 3160 495014624 495014709 5.050000e-16 97.1
57 TraesCS2D01G457800 chr1A 90.000 340 19 8 4980 5314 512456702 512457031 5.670000e-115 425.0
58 TraesCS2D01G457800 chr1A 83.784 111 18 0 645 755 557924893 557925003 8.390000e-19 106.0
59 TraesCS2D01G457800 chr4A 89.676 339 20 8 4980 5314 609085782 609085455 9.490000e-113 418.0
60 TraesCS2D01G457800 chr4A 87.097 93 8 2 3076 3166 625404777 625404867 1.090000e-17 102.0
61 TraesCS2D01G457800 chr4A 94.595 37 2 0 873 909 11759693 11759729 2.380000e-04 58.4
62 TraesCS2D01G457800 chr6B 89.150 341 22 8 4980 5315 26784397 26784067 1.590000e-110 411.0
63 TraesCS2D01G457800 chr3D 92.500 200 12 3 5456 5654 23969814 23969617 3.610000e-72 283.0
64 TraesCS2D01G457800 chr3D 87.356 87 8 2 3076 3160 373490402 373490487 5.050000e-16 97.1
65 TraesCS2D01G457800 chr7D 91.000 200 17 1 5455 5654 636483763 636483961 1.010000e-67 268.0
66 TraesCS2D01G457800 chr7B 88.060 201 21 3 5455 5654 491122519 491122321 1.030000e-57 235.0
67 TraesCS2D01G457800 chr7B 90.083 121 12 0 5036 5156 717908481 717908601 2.280000e-34 158.0
68 TraesCS2D01G457800 chr4B 88.947 190 13 8 5469 5654 466062453 466062638 1.720000e-55 228.0
69 TraesCS2D01G457800 chr4B 97.917 48 1 0 4925 4972 667882813 667882860 3.930000e-12 84.2
70 TraesCS2D01G457800 chr3B 85.780 218 8 5 1 196 423533725 423533941 6.220000e-50 209.0
71 TraesCS2D01G457800 chr3B 88.506 87 7 2 3076 3160 487224399 487224484 1.090000e-17 102.0
72 TraesCS2D01G457800 chr7A 81.604 212 16 10 5077 5287 35761997 35761808 2.950000e-33 154.0
73 TraesCS2D01G457800 chr6D 91.398 93 5 2 3076 3166 122992191 122992100 2.320000e-24 124.0
74 TraesCS2D01G457800 chr6D 84.956 113 17 0 643 755 81331755 81331867 1.390000e-21 115.0
75 TraesCS2D01G457800 chr6A 85.088 114 17 0 642 755 442082581 442082694 3.880000e-22 117.0
76 TraesCS2D01G457800 chr5D 84.956 113 17 0 643 755 253523185 253523073 1.390000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G457800 chr2D 565144350 565150468 6118 True 11300.000000 11300 100.000000 1 6119 1 chr2D.!!$R2 6118
1 TraesCS2D01G457800 chr2D 565062448 565063712 1264 True 2215.000000 2215 98.261000 3473 4737 1 chr2D.!!$R1 1264
2 TraesCS2D01G457800 chr2D 565097995 565101576 3581 False 985.000000 2385 87.023750 1094 4737 4 chr2D.!!$F1 3643
3 TraesCS2D01G457800 chr2D 577628185 577630595 2410 False 657.666667 1639 89.743667 1119 3592 3 chr2D.!!$F2 2473
4 TraesCS2D01G457800 chr2A 705585304 705594285 8981 True 2123.425000 6277 91.396500 267 6119 4 chr2A.!!$R3 5852
5 TraesCS2D01G457800 chr2A 715775474 715777176 1702 True 1581.000000 1581 83.639000 1187 2905 1 chr2A.!!$R2 1718
6 TraesCS2D01G457800 chr2A 705539104 705542789 3685 False 1282.666667 2266 87.189333 1094 4737 3 chr2A.!!$F1 3643
7 TraesCS2D01G457800 chr2B 677012084 677017582 5498 True 1471.800000 4734 94.271800 1030 6117 5 chr2B.!!$R5 5087
8 TraesCS2D01G457800 chr2B 676764459 676768211 3752 False 935.000000 2235 86.793750 1094 4737 4 chr2B.!!$F2 3643
9 TraesCS2D01G457800 chr2B 694774395 694777969 3574 True 846.750000 1600 87.720500 1112 3338 2 chr2B.!!$R8 2226
10 TraesCS2D01G457800 chr2B 694745688 694749262 3574 True 832.750000 1572 87.584000 1112 3338 2 chr2B.!!$R7 2226
11 TraesCS2D01G457800 chr2B 694697992 694699840 1848 True 646.500000 1194 88.249000 1519 3338 2 chr2B.!!$R6 1819
12 TraesCS2D01G457800 chr5B 432707634 432711332 3698 False 1296.000000 1740 81.792500 1117 4737 2 chr5B.!!$F1 3620
13 TraesCS2D01G457800 chr5A 467754085 467755265 1180 True 1079.000000 1079 83.389000 1094 2268 1 chr5A.!!$R5 1174
14 TraesCS2D01G457800 chr5A 467740764 467741930 1166 True 809.000000 809 80.049000 3369 4541 1 chr5A.!!$R4 1172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.038526 CGGACGGTTACTGTGCTTCT 60.039 55.0 13.61 0.0 0.00 2.85 F
205 206 0.179018 CCCTAGCGCTGCCCTATTTT 60.179 55.0 22.90 0.0 0.00 1.82 F
1708 4879 0.103026 TCCACGCGATCCAGAATGAG 59.897 55.0 15.93 0.0 39.69 2.90 F
1988 5185 0.106569 CCACTGCTATGGCCCATTCA 60.107 55.0 0.00 0.0 37.74 2.57 F
2053 5250 0.109723 TCTCCCCACCGACCAAAAAG 59.890 55.0 0.00 0.0 0.00 2.27 F
2054 5251 0.109723 CTCCCCACCGACCAAAAAGA 59.890 55.0 0.00 0.0 0.00 2.52 F
2749 5985 0.672401 ATACTGGCACACCCGTTTCG 60.672 55.0 0.00 0.0 35.87 3.46 F
4741 10115 0.388649 ACTCGCAAGCAGTTACGGAG 60.389 55.0 0.00 0.0 37.18 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 4191 0.036952 CCATACCTCCGCCATAGCAG 60.037 60.000 0.00 0.00 39.83 4.24 R
1988 5185 0.107214 ATGATGTTGGCGACGGGATT 60.107 50.000 0.00 0.00 0.00 3.01 R
3035 6371 0.400815 ACCAGGGAGTTGTGTGGGTA 60.401 55.000 0.00 0.00 34.07 3.69 R
3959 9266 3.054065 AGGCAAGGGATCAAAAGGAGTAG 60.054 47.826 0.00 0.00 0.00 2.57 R
4053 9374 2.606275 GCATAGAAGTGCGGTAGCC 58.394 57.895 0.00 0.00 44.33 3.93 R
4462 9810 3.449746 TTGAATGGGAATTCCTCCGTT 57.550 42.857 23.63 14.98 46.51 4.44 R
4876 10260 1.001974 AGTGTATGAGCTGGTGCGAAA 59.998 47.619 0.00 0.00 45.42 3.46 R
5636 11355 0.035725 CTCCATGTTGAGCAGGAGCA 60.036 55.000 0.00 0.00 45.49 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.423886 AGCAGTCAATTACTAAGAGGAAGC 58.576 41.667 0.00 0.00 35.76 3.86
25 26 5.046304 AGCAGTCAATTACTAAGAGGAAGCA 60.046 40.000 0.00 0.00 35.76 3.91
26 27 5.643777 GCAGTCAATTACTAAGAGGAAGCAA 59.356 40.000 0.00 0.00 35.76 3.91
27 28 6.149474 GCAGTCAATTACTAAGAGGAAGCAAA 59.851 38.462 0.00 0.00 35.76 3.68
28 29 7.625185 GCAGTCAATTACTAAGAGGAAGCAAAG 60.625 40.741 0.00 0.00 35.76 2.77
29 30 6.881602 AGTCAATTACTAAGAGGAAGCAAAGG 59.118 38.462 0.00 0.00 36.36 3.11
30 31 6.879458 GTCAATTACTAAGAGGAAGCAAAGGA 59.121 38.462 0.00 0.00 0.00 3.36
31 32 7.390718 GTCAATTACTAAGAGGAAGCAAAGGAA 59.609 37.037 0.00 0.00 0.00 3.36
32 33 7.607991 TCAATTACTAAGAGGAAGCAAAGGAAG 59.392 37.037 0.00 0.00 0.00 3.46
33 34 4.293662 ACTAAGAGGAAGCAAAGGAAGG 57.706 45.455 0.00 0.00 0.00 3.46
34 35 3.910627 ACTAAGAGGAAGCAAAGGAAGGA 59.089 43.478 0.00 0.00 0.00 3.36
35 36 3.431673 AAGAGGAAGCAAAGGAAGGAG 57.568 47.619 0.00 0.00 0.00 3.69
36 37 1.004161 AGAGGAAGCAAAGGAAGGAGC 59.996 52.381 0.00 0.00 0.00 4.70
37 38 1.004161 GAGGAAGCAAAGGAAGGAGCT 59.996 52.381 0.00 0.00 39.37 4.09
38 39 1.172175 GGAAGCAAAGGAAGGAGCTG 58.828 55.000 0.00 0.00 37.41 4.24
39 40 1.172175 GAAGCAAAGGAAGGAGCTGG 58.828 55.000 0.00 0.00 37.41 4.85
40 41 0.897401 AAGCAAAGGAAGGAGCTGGC 60.897 55.000 0.00 0.00 37.41 4.85
41 42 2.346541 GCAAAGGAAGGAGCTGGCC 61.347 63.158 0.00 0.00 0.00 5.36
42 43 2.042831 CAAAGGAAGGAGCTGGCCG 61.043 63.158 0.00 0.00 0.00 6.13
43 44 2.224159 AAAGGAAGGAGCTGGCCGA 61.224 57.895 0.00 0.00 0.00 5.54
44 45 1.779061 AAAGGAAGGAGCTGGCCGAA 61.779 55.000 0.00 0.00 0.00 4.30
45 46 2.124942 GGAAGGAGCTGGCCGAAG 60.125 66.667 0.00 0.00 0.00 3.79
58 59 4.430765 CGAAGGTAGCGGGCGTGT 62.431 66.667 0.00 0.00 0.00 4.49
59 60 2.047560 GAAGGTAGCGGGCGTGTT 60.048 61.111 0.00 0.00 0.00 3.32
60 61 1.670083 GAAGGTAGCGGGCGTGTTT 60.670 57.895 0.00 0.00 0.00 2.83
61 62 0.390209 GAAGGTAGCGGGCGTGTTTA 60.390 55.000 0.00 0.00 0.00 2.01
62 63 0.390735 AAGGTAGCGGGCGTGTTTAG 60.391 55.000 0.00 0.00 0.00 1.85
63 64 2.458610 GGTAGCGGGCGTGTTTAGC 61.459 63.158 0.00 0.00 0.00 3.09
64 65 2.507547 TAGCGGGCGTGTTTAGCG 60.508 61.111 0.00 0.00 35.00 4.26
65 66 3.993376 TAGCGGGCGTGTTTAGCGG 62.993 63.158 0.00 0.00 35.00 5.52
67 68 2.739287 CGGGCGTGTTTAGCGGAA 60.739 61.111 0.00 0.00 35.00 4.30
68 69 2.736682 CGGGCGTGTTTAGCGGAAG 61.737 63.158 0.00 0.00 35.00 3.46
82 83 1.079503 CGGAAGCAGTTACAGGAAGC 58.920 55.000 0.00 0.00 0.00 3.86
83 84 1.608025 CGGAAGCAGTTACAGGAAGCA 60.608 52.381 0.00 0.00 0.00 3.91
84 85 2.504367 GGAAGCAGTTACAGGAAGCAA 58.496 47.619 0.00 0.00 0.00 3.91
85 86 3.084786 GGAAGCAGTTACAGGAAGCAAT 58.915 45.455 0.00 0.00 0.00 3.56
86 87 3.127721 GGAAGCAGTTACAGGAAGCAATC 59.872 47.826 0.00 0.00 0.00 2.67
87 88 3.423539 AGCAGTTACAGGAAGCAATCA 57.576 42.857 0.00 0.00 0.00 2.57
88 89 3.077359 AGCAGTTACAGGAAGCAATCAC 58.923 45.455 0.00 0.00 0.00 3.06
89 90 3.077359 GCAGTTACAGGAAGCAATCACT 58.923 45.455 0.00 0.00 0.00 3.41
90 91 3.503748 GCAGTTACAGGAAGCAATCACTT 59.496 43.478 0.00 0.00 0.00 3.16
91 92 4.022849 GCAGTTACAGGAAGCAATCACTTT 60.023 41.667 0.00 0.00 0.00 2.66
92 93 5.181245 GCAGTTACAGGAAGCAATCACTTTA 59.819 40.000 0.00 0.00 0.00 1.85
93 94 6.127897 GCAGTTACAGGAAGCAATCACTTTAT 60.128 38.462 0.00 0.00 0.00 1.40
94 95 7.065803 GCAGTTACAGGAAGCAATCACTTTATA 59.934 37.037 0.00 0.00 0.00 0.98
95 96 9.113838 CAGTTACAGGAAGCAATCACTTTATAT 57.886 33.333 0.00 0.00 0.00 0.86
96 97 9.113838 AGTTACAGGAAGCAATCACTTTATATG 57.886 33.333 0.00 0.00 0.00 1.78
97 98 6.382869 ACAGGAAGCAATCACTTTATATGC 57.617 37.500 0.00 0.00 37.28 3.14
98 99 5.008019 ACAGGAAGCAATCACTTTATATGCG 59.992 40.000 0.00 0.00 41.72 4.73
99 100 4.516698 AGGAAGCAATCACTTTATATGCGG 59.483 41.667 0.00 0.00 41.72 5.69
100 101 4.320494 GGAAGCAATCACTTTATATGCGGG 60.320 45.833 0.00 0.00 41.72 6.13
101 102 2.554032 AGCAATCACTTTATATGCGGGC 59.446 45.455 0.00 0.00 41.72 6.13
102 103 2.351738 GCAATCACTTTATATGCGGGCC 60.352 50.000 0.00 0.00 0.00 5.80
103 104 2.884012 CAATCACTTTATATGCGGGCCA 59.116 45.455 4.39 0.00 0.00 5.36
104 105 2.949177 TCACTTTATATGCGGGCCAT 57.051 45.000 4.39 0.00 37.97 4.40
105 106 4.568072 ATCACTTTATATGCGGGCCATA 57.432 40.909 4.39 0.00 40.52 2.74
106 107 3.670625 TCACTTTATATGCGGGCCATAC 58.329 45.455 4.39 0.00 39.14 2.39
107 108 3.326588 TCACTTTATATGCGGGCCATACT 59.673 43.478 4.39 0.00 39.14 2.12
108 109 4.528987 TCACTTTATATGCGGGCCATACTA 59.471 41.667 4.39 0.00 39.14 1.82
109 110 4.870426 CACTTTATATGCGGGCCATACTAG 59.130 45.833 4.39 0.00 39.14 2.57
110 111 4.775780 ACTTTATATGCGGGCCATACTAGA 59.224 41.667 4.39 0.00 39.14 2.43
111 112 5.247564 ACTTTATATGCGGGCCATACTAGAA 59.752 40.000 4.39 0.00 39.14 2.10
112 113 3.895232 ATATGCGGGCCATACTAGAAG 57.105 47.619 4.39 0.00 39.14 2.85
113 114 1.717032 ATGCGGGCCATACTAGAAGA 58.283 50.000 4.39 0.00 30.69 2.87
114 115 1.717032 TGCGGGCCATACTAGAAGAT 58.283 50.000 4.39 0.00 0.00 2.40
115 116 1.618837 TGCGGGCCATACTAGAAGATC 59.381 52.381 4.39 0.00 0.00 2.75
116 117 1.402984 GCGGGCCATACTAGAAGATCG 60.403 57.143 4.39 0.00 0.00 3.69
117 118 1.202582 CGGGCCATACTAGAAGATCGG 59.797 57.143 4.39 0.00 0.00 4.18
118 119 2.526432 GGGCCATACTAGAAGATCGGA 58.474 52.381 4.39 0.00 0.00 4.55
119 120 2.231721 GGGCCATACTAGAAGATCGGAC 59.768 54.545 4.39 0.00 0.00 4.79
120 121 2.095161 GGCCATACTAGAAGATCGGACG 60.095 54.545 0.00 0.00 0.00 4.79
121 122 2.095161 GCCATACTAGAAGATCGGACGG 60.095 54.545 0.00 0.00 0.00 4.79
122 123 3.147629 CCATACTAGAAGATCGGACGGT 58.852 50.000 0.00 0.00 0.00 4.83
123 124 3.568853 CCATACTAGAAGATCGGACGGTT 59.431 47.826 0.00 0.00 0.00 4.44
124 125 4.758674 CCATACTAGAAGATCGGACGGTTA 59.241 45.833 0.00 0.00 0.00 2.85
125 126 5.334724 CCATACTAGAAGATCGGACGGTTAC 60.335 48.000 0.00 0.00 0.00 2.50
126 127 3.883669 ACTAGAAGATCGGACGGTTACT 58.116 45.455 0.00 0.00 0.00 2.24
127 128 3.626670 ACTAGAAGATCGGACGGTTACTG 59.373 47.826 0.00 0.00 0.00 2.74
128 129 2.444421 AGAAGATCGGACGGTTACTGT 58.556 47.619 0.00 0.00 0.00 3.55
129 130 2.163815 AGAAGATCGGACGGTTACTGTG 59.836 50.000 0.00 0.00 0.00 3.66
130 131 0.172803 AGATCGGACGGTTACTGTGC 59.827 55.000 0.00 3.16 0.00 4.57
131 132 0.172803 GATCGGACGGTTACTGTGCT 59.827 55.000 13.61 0.00 0.00 4.40
132 133 0.606604 ATCGGACGGTTACTGTGCTT 59.393 50.000 13.61 0.00 0.00 3.91
133 134 0.038892 TCGGACGGTTACTGTGCTTC 60.039 55.000 13.61 0.00 0.00 3.86
134 135 0.038526 CGGACGGTTACTGTGCTTCT 60.039 55.000 13.61 0.00 0.00 2.85
135 136 1.200716 CGGACGGTTACTGTGCTTCTA 59.799 52.381 13.61 0.00 0.00 2.10
136 137 2.159282 CGGACGGTTACTGTGCTTCTAT 60.159 50.000 13.61 0.00 0.00 1.98
137 138 3.445857 GGACGGTTACTGTGCTTCTATC 58.554 50.000 8.60 0.00 0.00 2.08
138 139 3.445857 GACGGTTACTGTGCTTCTATCC 58.554 50.000 0.00 0.00 0.00 2.59
139 140 3.097614 ACGGTTACTGTGCTTCTATCCT 58.902 45.455 0.00 0.00 0.00 3.24
140 141 4.275810 ACGGTTACTGTGCTTCTATCCTA 58.724 43.478 0.00 0.00 0.00 2.94
141 142 4.097589 ACGGTTACTGTGCTTCTATCCTAC 59.902 45.833 0.00 0.00 0.00 3.18
142 143 4.608951 GGTTACTGTGCTTCTATCCTACG 58.391 47.826 0.00 0.00 0.00 3.51
143 144 4.499357 GGTTACTGTGCTTCTATCCTACGG 60.499 50.000 0.00 0.00 0.00 4.02
144 145 2.736347 ACTGTGCTTCTATCCTACGGT 58.264 47.619 0.00 0.00 0.00 4.83
145 146 2.688958 ACTGTGCTTCTATCCTACGGTC 59.311 50.000 0.00 0.00 0.00 4.79
146 147 2.952978 CTGTGCTTCTATCCTACGGTCT 59.047 50.000 0.00 0.00 0.00 3.85
147 148 3.362706 TGTGCTTCTATCCTACGGTCTT 58.637 45.455 0.00 0.00 0.00 3.01
148 149 3.130516 TGTGCTTCTATCCTACGGTCTTG 59.869 47.826 0.00 0.00 0.00 3.02
149 150 2.693591 TGCTTCTATCCTACGGTCTTGG 59.306 50.000 0.00 0.00 0.00 3.61
150 151 2.957006 GCTTCTATCCTACGGTCTTGGA 59.043 50.000 0.00 0.00 0.00 3.53
151 152 3.243468 GCTTCTATCCTACGGTCTTGGAC 60.243 52.174 0.58 0.00 32.16 4.02
152 153 3.947612 TCTATCCTACGGTCTTGGACT 57.052 47.619 0.58 0.00 32.16 3.85
153 154 5.374921 CTTCTATCCTACGGTCTTGGACTA 58.625 45.833 0.58 0.00 32.16 2.59
154 155 4.970711 TCTATCCTACGGTCTTGGACTAG 58.029 47.826 0.00 0.00 32.16 2.57
155 156 3.666345 ATCCTACGGTCTTGGACTAGT 57.334 47.619 0.00 0.00 32.16 2.57
156 157 2.996631 TCCTACGGTCTTGGACTAGTC 58.003 52.381 14.87 14.87 32.47 2.59
157 158 2.575279 TCCTACGGTCTTGGACTAGTCT 59.425 50.000 21.88 2.68 32.47 3.24
158 159 2.683867 CCTACGGTCTTGGACTAGTCTG 59.316 54.545 21.88 12.54 32.47 3.51
159 160 2.581216 ACGGTCTTGGACTAGTCTGA 57.419 50.000 21.88 14.44 32.47 3.27
160 161 3.088789 ACGGTCTTGGACTAGTCTGAT 57.911 47.619 21.88 2.29 32.47 2.90
161 162 4.232188 ACGGTCTTGGACTAGTCTGATA 57.768 45.455 21.88 3.90 32.47 2.15
162 163 4.597004 ACGGTCTTGGACTAGTCTGATAA 58.403 43.478 21.88 11.28 32.47 1.75
163 164 4.641094 ACGGTCTTGGACTAGTCTGATAAG 59.359 45.833 21.88 18.56 32.47 1.73
164 165 4.882427 CGGTCTTGGACTAGTCTGATAAGA 59.118 45.833 21.88 20.14 32.47 2.10
165 166 5.008217 CGGTCTTGGACTAGTCTGATAAGAG 59.992 48.000 21.88 11.52 32.47 2.85
166 167 5.221165 GGTCTTGGACTAGTCTGATAAGAGC 60.221 48.000 26.18 26.18 35.13 4.09
167 168 5.358442 GTCTTGGACTAGTCTGATAAGAGCA 59.642 44.000 21.88 5.78 0.00 4.26
168 169 5.952347 TCTTGGACTAGTCTGATAAGAGCAA 59.048 40.000 21.88 12.63 0.00 3.91
169 170 5.843673 TGGACTAGTCTGATAAGAGCAAG 57.156 43.478 21.88 0.00 0.00 4.01
170 171 4.646945 TGGACTAGTCTGATAAGAGCAAGG 59.353 45.833 21.88 0.00 0.00 3.61
171 172 4.038642 GGACTAGTCTGATAAGAGCAAGGG 59.961 50.000 21.88 0.00 0.00 3.95
172 173 4.873010 ACTAGTCTGATAAGAGCAAGGGA 58.127 43.478 0.00 0.00 0.00 4.20
173 174 5.463154 ACTAGTCTGATAAGAGCAAGGGAT 58.537 41.667 0.00 0.00 0.00 3.85
174 175 4.953940 AGTCTGATAAGAGCAAGGGATC 57.046 45.455 0.00 0.00 0.00 3.36
175 176 4.293494 AGTCTGATAAGAGCAAGGGATCA 58.707 43.478 0.00 0.00 0.00 2.92
176 177 4.344679 AGTCTGATAAGAGCAAGGGATCAG 59.655 45.833 4.20 4.20 43.16 2.90
177 178 4.100808 GTCTGATAAGAGCAAGGGATCAGT 59.899 45.833 9.36 0.00 42.63 3.41
178 179 5.303078 GTCTGATAAGAGCAAGGGATCAGTA 59.697 44.000 9.36 0.00 42.63 2.74
179 180 5.538053 TCTGATAAGAGCAAGGGATCAGTAG 59.462 44.000 9.36 0.00 42.63 2.57
180 181 5.211973 TGATAAGAGCAAGGGATCAGTAGT 58.788 41.667 0.00 0.00 0.00 2.73
181 182 5.303078 TGATAAGAGCAAGGGATCAGTAGTC 59.697 44.000 0.00 0.00 0.00 2.59
182 183 3.396685 AGAGCAAGGGATCAGTAGTCT 57.603 47.619 0.00 0.00 0.00 3.24
183 184 3.030291 AGAGCAAGGGATCAGTAGTCTG 58.970 50.000 0.00 0.00 42.54 3.51
184 185 2.102252 GAGCAAGGGATCAGTAGTCTGG 59.898 54.545 0.00 0.00 41.59 3.86
185 186 1.834263 GCAAGGGATCAGTAGTCTGGT 59.166 52.381 0.00 0.00 41.59 4.00
192 193 2.438800 TCAGTAGTCTGGTCCCTAGC 57.561 55.000 0.00 0.00 41.59 3.42
193 194 1.025812 CAGTAGTCTGGTCCCTAGCG 58.974 60.000 0.00 0.00 37.97 4.26
194 195 0.752376 AGTAGTCTGGTCCCTAGCGC 60.752 60.000 0.00 0.00 0.00 5.92
195 196 0.752376 GTAGTCTGGTCCCTAGCGCT 60.752 60.000 17.26 17.26 0.00 5.92
196 197 0.752009 TAGTCTGGTCCCTAGCGCTG 60.752 60.000 22.90 10.13 0.00 5.18
197 198 3.461773 TCTGGTCCCTAGCGCTGC 61.462 66.667 22.90 4.69 0.00 5.25
198 199 4.537433 CTGGTCCCTAGCGCTGCC 62.537 72.222 22.90 14.25 0.00 4.85
201 202 2.838225 GTCCCTAGCGCTGCCCTA 60.838 66.667 22.90 0.00 0.00 3.53
202 203 2.201490 TCCCTAGCGCTGCCCTAT 59.799 61.111 22.90 0.00 0.00 2.57
203 204 1.459539 TCCCTAGCGCTGCCCTATT 60.460 57.895 22.90 0.00 0.00 1.73
204 205 1.054406 TCCCTAGCGCTGCCCTATTT 61.054 55.000 22.90 0.00 0.00 1.40
205 206 0.179018 CCCTAGCGCTGCCCTATTTT 60.179 55.000 22.90 0.00 0.00 1.82
206 207 1.071699 CCCTAGCGCTGCCCTATTTTA 59.928 52.381 22.90 0.00 0.00 1.52
207 208 2.486548 CCCTAGCGCTGCCCTATTTTAA 60.487 50.000 22.90 0.00 0.00 1.52
208 209 3.211045 CCTAGCGCTGCCCTATTTTAAA 58.789 45.455 22.90 0.00 0.00 1.52
209 210 3.003378 CCTAGCGCTGCCCTATTTTAAAC 59.997 47.826 22.90 0.00 0.00 2.01
210 211 1.749063 AGCGCTGCCCTATTTTAAACC 59.251 47.619 10.39 0.00 0.00 3.27
211 212 1.533129 GCGCTGCCCTATTTTAAACCG 60.533 52.381 0.00 0.00 0.00 4.44
212 213 2.011222 CGCTGCCCTATTTTAAACCGA 58.989 47.619 0.00 0.00 0.00 4.69
213 214 2.223180 CGCTGCCCTATTTTAAACCGAC 60.223 50.000 0.00 0.00 0.00 4.79
214 215 3.014623 GCTGCCCTATTTTAAACCGACT 58.985 45.455 0.00 0.00 0.00 4.18
215 216 3.064958 GCTGCCCTATTTTAAACCGACTC 59.935 47.826 0.00 0.00 0.00 3.36
216 217 3.264104 TGCCCTATTTTAAACCGACTCG 58.736 45.455 0.00 0.00 0.00 4.18
217 218 3.055963 TGCCCTATTTTAAACCGACTCGA 60.056 43.478 0.00 0.00 0.00 4.04
218 219 3.554731 GCCCTATTTTAAACCGACTCGAG 59.445 47.826 11.84 11.84 0.00 4.04
219 220 4.678840 GCCCTATTTTAAACCGACTCGAGA 60.679 45.833 21.68 0.00 0.00 4.04
220 221 5.413499 CCCTATTTTAAACCGACTCGAGAA 58.587 41.667 21.68 0.00 0.00 2.87
221 222 5.870978 CCCTATTTTAAACCGACTCGAGAAA 59.129 40.000 21.68 6.78 0.00 2.52
222 223 6.537660 CCCTATTTTAAACCGACTCGAGAAAT 59.462 38.462 21.68 13.67 0.00 2.17
223 224 7.254353 CCCTATTTTAAACCGACTCGAGAAATC 60.254 40.741 21.68 5.35 0.00 2.17
224 225 5.851047 TTTTAAACCGACTCGAGAAATCC 57.149 39.130 21.68 1.67 0.00 3.01
225 226 4.796038 TTAAACCGACTCGAGAAATCCT 57.204 40.909 21.68 0.00 0.00 3.24
226 227 5.902613 TTAAACCGACTCGAGAAATCCTA 57.097 39.130 21.68 0.74 0.00 2.94
227 228 3.779271 AACCGACTCGAGAAATCCTAC 57.221 47.619 21.68 0.00 0.00 3.18
228 229 2.719739 ACCGACTCGAGAAATCCTACA 58.280 47.619 21.68 0.00 0.00 2.74
229 230 2.683867 ACCGACTCGAGAAATCCTACAG 59.316 50.000 21.68 0.00 0.00 2.74
230 231 2.943690 CCGACTCGAGAAATCCTACAGA 59.056 50.000 21.68 0.00 0.00 3.41
231 232 3.002862 CCGACTCGAGAAATCCTACAGAG 59.997 52.174 21.68 0.00 0.00 3.35
232 233 3.872182 CGACTCGAGAAATCCTACAGAGA 59.128 47.826 21.68 0.00 0.00 3.10
233 234 4.513692 CGACTCGAGAAATCCTACAGAGAT 59.486 45.833 21.68 0.00 0.00 2.75
234 235 5.333798 CGACTCGAGAAATCCTACAGAGATC 60.334 48.000 21.68 0.00 0.00 2.75
235 236 4.825085 ACTCGAGAAATCCTACAGAGATCC 59.175 45.833 21.68 0.00 0.00 3.36
236 237 4.145807 TCGAGAAATCCTACAGAGATCCC 58.854 47.826 0.00 0.00 0.00 3.85
237 238 3.891977 CGAGAAATCCTACAGAGATCCCA 59.108 47.826 0.00 0.00 0.00 4.37
238 239 4.342378 CGAGAAATCCTACAGAGATCCCAA 59.658 45.833 0.00 0.00 0.00 4.12
239 240 5.606505 GAGAAATCCTACAGAGATCCCAAC 58.393 45.833 0.00 0.00 0.00 3.77
240 241 5.284582 AGAAATCCTACAGAGATCCCAACT 58.715 41.667 0.00 0.00 0.00 3.16
241 242 5.365314 AGAAATCCTACAGAGATCCCAACTC 59.635 44.000 0.00 0.00 34.95 3.01
242 243 2.656002 TCCTACAGAGATCCCAACTCG 58.344 52.381 0.00 0.00 39.12 4.18
243 244 1.067821 CCTACAGAGATCCCAACTCGC 59.932 57.143 0.00 0.00 39.12 5.03
244 245 1.067821 CTACAGAGATCCCAACTCGCC 59.932 57.143 0.00 0.00 39.12 5.54
245 246 1.144936 CAGAGATCCCAACTCGCCC 59.855 63.158 0.00 0.00 39.12 6.13
246 247 1.002274 AGAGATCCCAACTCGCCCT 59.998 57.895 0.00 0.00 39.12 5.19
247 248 0.261991 AGAGATCCCAACTCGCCCTA 59.738 55.000 0.00 0.00 39.12 3.53
248 249 1.133009 AGAGATCCCAACTCGCCCTAT 60.133 52.381 0.00 0.00 39.12 2.57
249 250 1.273886 GAGATCCCAACTCGCCCTATC 59.726 57.143 0.00 0.00 0.00 2.08
250 251 1.133009 AGATCCCAACTCGCCCTATCT 60.133 52.381 0.00 0.00 0.00 1.98
251 252 2.110188 AGATCCCAACTCGCCCTATCTA 59.890 50.000 0.00 0.00 0.00 1.98
252 253 2.696526 TCCCAACTCGCCCTATCTAT 57.303 50.000 0.00 0.00 0.00 1.98
253 254 2.526432 TCCCAACTCGCCCTATCTATC 58.474 52.381 0.00 0.00 0.00 2.08
254 255 2.110188 TCCCAACTCGCCCTATCTATCT 59.890 50.000 0.00 0.00 0.00 1.98
255 256 2.900546 CCCAACTCGCCCTATCTATCTT 59.099 50.000 0.00 0.00 0.00 2.40
256 257 3.325135 CCCAACTCGCCCTATCTATCTTT 59.675 47.826 0.00 0.00 0.00 2.52
257 258 4.527038 CCCAACTCGCCCTATCTATCTTTA 59.473 45.833 0.00 0.00 0.00 1.85
258 259 5.187967 CCCAACTCGCCCTATCTATCTTTAT 59.812 44.000 0.00 0.00 0.00 1.40
259 260 6.295916 CCCAACTCGCCCTATCTATCTTTATT 60.296 42.308 0.00 0.00 0.00 1.40
260 261 7.093465 CCCAACTCGCCCTATCTATCTTTATTA 60.093 40.741 0.00 0.00 0.00 0.98
261 262 8.311836 CCAACTCGCCCTATCTATCTTTATTAA 58.688 37.037 0.00 0.00 0.00 1.40
262 263 9.877178 CAACTCGCCCTATCTATCTTTATTAAT 57.123 33.333 0.00 0.00 0.00 1.40
263 264 9.877178 AACTCGCCCTATCTATCTTTATTAATG 57.123 33.333 0.00 0.00 0.00 1.90
264 265 8.478877 ACTCGCCCTATCTATCTTTATTAATGG 58.521 37.037 0.00 0.00 0.00 3.16
265 266 7.272978 TCGCCCTATCTATCTTTATTAATGGC 58.727 38.462 0.00 0.00 0.00 4.40
313 314 5.883673 AGAGTAGAAGTGGTAACTCTAGCAG 59.116 44.000 2.14 0.00 45.19 4.24
364 366 7.661437 TGTGCTAGAGTGAGTCATTTATTGTTT 59.339 33.333 0.00 0.00 0.00 2.83
403 406 2.672996 GGCATGCAGTGAACGGGT 60.673 61.111 21.36 0.00 0.00 5.28
484 487 9.777575 AATGTACGCATACTTTTATAAAACCAC 57.222 29.630 6.54 0.00 34.39 4.16
507 510 8.286800 CCACGAGAACAAATTGTTAATACTTCA 58.713 33.333 11.71 0.00 41.28 3.02
529 532 9.316730 CTTCATGAGAGGAACATTTTTCAAAAA 57.683 29.630 0.00 0.00 0.00 1.94
530 533 9.835389 TTCATGAGAGGAACATTTTTCAAAAAT 57.165 25.926 1.98 1.98 0.00 1.82
638 643 8.478066 AGAAAAACAGAAGCCATTAGAAGTTTT 58.522 29.630 0.00 0.00 38.96 2.43
641 646 4.455877 ACAGAAGCCATTAGAAGTTTTCCG 59.544 41.667 0.00 0.00 0.00 4.30
645 650 4.192317 AGCCATTAGAAGTTTTCCGCTAG 58.808 43.478 0.00 0.00 0.00 3.42
655 660 3.320826 AGTTTTCCGCTAGTGGCATTTTT 59.679 39.130 18.01 0.00 41.91 1.94
656 661 3.296322 TTTCCGCTAGTGGCATTTTTG 57.704 42.857 18.01 0.00 41.91 2.44
659 664 1.468054 CCGCTAGTGGCATTTTTGAGC 60.468 52.381 9.93 0.00 41.91 4.26
663 668 3.367703 GCTAGTGGCATTTTTGAGCATGT 60.368 43.478 0.00 0.00 41.35 3.21
675 680 6.882610 TTTTGAGCATGTGTCTAACAGATT 57.117 33.333 0.00 0.00 43.64 2.40
720 725 7.412137 AAACTTGCTAATGACAAAATTGAGC 57.588 32.000 0.00 0.00 0.00 4.26
725 730 4.860907 GCTAATGACAAAATTGAGCAGTGG 59.139 41.667 0.00 1.23 0.00 4.00
739 744 3.441101 AGCAGTGGGATACAACTAGTGA 58.559 45.455 0.00 0.00 39.74 3.41
793 829 5.554636 CGCATTTAAGTGACTCAATCAGAC 58.445 41.667 1.56 0.00 38.28 3.51
794 830 5.120674 CGCATTTAAGTGACTCAATCAGACA 59.879 40.000 1.56 0.00 38.28 3.41
795 831 6.183360 CGCATTTAAGTGACTCAATCAGACAT 60.183 38.462 1.56 0.00 38.28 3.06
796 832 7.010460 CGCATTTAAGTGACTCAATCAGACATA 59.990 37.037 1.56 0.00 38.28 2.29
797 833 8.668353 GCATTTAAGTGACTCAATCAGACATAA 58.332 33.333 1.56 0.00 38.28 1.90
888 925 6.129062 GCGACTGACATATAACTTAGATGTGC 60.129 42.308 12.72 6.85 40.39 4.57
889 926 6.918022 CGACTGACATATAACTTAGATGTGCA 59.082 38.462 12.72 9.73 40.39 4.57
890 927 7.096436 CGACTGACATATAACTTAGATGTGCAC 60.096 40.741 10.75 10.75 40.39 4.57
914 1361 7.445402 CACTACTTAGGGCACATATAGCAAAAT 59.555 37.037 0.00 0.00 0.00 1.82
915 1362 6.884280 ACTTAGGGCACATATAGCAAAATC 57.116 37.500 0.00 0.00 0.00 2.17
924 1371 6.198966 GCACATATAGCAAAATCGAAAAAGGG 59.801 38.462 0.00 0.00 0.00 3.95
929 1376 9.936759 ATATAGCAAAATCGAAAAAGGGAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
971 1418 3.330720 GGCCACTACAGGGTGCCT 61.331 66.667 0.00 0.00 36.03 4.75
997 1447 1.546834 GAGCGAACACTCCGTATCAC 58.453 55.000 0.00 0.00 0.00 3.06
999 1449 0.989890 GCGAACACTCCGTATCACAC 59.010 55.000 0.00 0.00 0.00 3.82
1026 4175 2.472909 GCCTGCTATGGCGGTTGTC 61.473 63.158 9.25 0.00 43.74 3.18
1027 4176 1.221840 CCTGCTATGGCGGTTGTCT 59.778 57.895 9.25 0.00 42.91 3.41
1028 4177 0.811616 CCTGCTATGGCGGTTGTCTC 60.812 60.000 9.25 0.00 42.91 3.36
1031 4180 1.271108 TGCTATGGCGGTTGTCTCAAA 60.271 47.619 0.00 0.00 42.25 2.69
1032 4181 1.810151 GCTATGGCGGTTGTCTCAAAA 59.190 47.619 0.00 0.00 0.00 2.44
1033 4182 2.227865 GCTATGGCGGTTGTCTCAAAAA 59.772 45.455 0.00 0.00 0.00 1.94
1243 4407 3.243873 ACTCGTATGATCATGTCCGCAAT 60.244 43.478 18.72 4.30 0.00 3.56
1258 4422 4.181010 AATCGGCTCGCCATGGCT 62.181 61.111 33.07 11.04 39.32 4.75
1322 4486 4.821589 GCCTTCTCGACCCAGCCG 62.822 72.222 0.00 0.00 0.00 5.52
1708 4879 0.103026 TCCACGCGATCCAGAATGAG 59.897 55.000 15.93 0.00 39.69 2.90
1711 4882 1.791204 CACGCGATCCAGAATGAGATG 59.209 52.381 15.93 0.00 39.69 2.90
1988 5185 0.106569 CCACTGCTATGGCCCATTCA 60.107 55.000 0.00 0.00 37.74 2.57
2053 5250 0.109723 TCTCCCCACCGACCAAAAAG 59.890 55.000 0.00 0.00 0.00 2.27
2054 5251 0.109723 CTCCCCACCGACCAAAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
2117 5318 1.745264 GCTCGCTCCTTCTATGGCT 59.255 57.895 0.00 0.00 0.00 4.75
2161 5362 3.615155 GGGCAAGAAACTCTATGAAGCT 58.385 45.455 0.00 0.00 0.00 3.74
2189 5390 3.752412 TCTTGCTCATTTCTGATTGCG 57.248 42.857 0.00 0.00 0.00 4.85
2383 5590 2.297315 ACTCGACTCTGCTGATGTTGAA 59.703 45.455 11.46 0.00 0.00 2.69
2518 5728 4.399934 TGGATGCACGAGTATACAACAGTA 59.600 41.667 5.50 0.00 26.67 2.74
2623 5854 6.713903 ACTTCTAATTATCATCCTGGCATGTG 59.286 38.462 0.00 0.00 0.00 3.21
2675 5911 2.424601 CACTTGCAGGAACCCATGTATG 59.575 50.000 1.40 0.00 0.00 2.39
2749 5985 0.672401 ATACTGGCACACCCGTTTCG 60.672 55.000 0.00 0.00 35.87 3.46
2800 6036 2.416893 GGCAAGTCGAAGAGATGGAAAC 59.583 50.000 0.00 0.00 36.95 2.78
3031 6367 7.064016 GCAGTTTGGTAAAGTTTGAACATTCAA 59.936 33.333 2.89 2.89 44.78 2.69
3088 6424 1.411612 CTTTACCTACTCCCGCCGATT 59.588 52.381 0.00 0.00 0.00 3.34
3253 6733 3.454812 CAGTGTAAGTATAGGCCCTGGTT 59.545 47.826 0.00 0.00 0.00 3.67
3276 8182 5.965033 ACCCACATCTGATCTACATTCTT 57.035 39.130 0.00 0.00 0.00 2.52
3959 9266 3.493129 CAGCAATTTATGATGTGGCATGC 59.507 43.478 9.90 9.90 40.58 4.06
4737 10111 2.763930 CGTTACTCGCAAGCAGTTAC 57.236 50.000 3.27 4.08 37.18 2.50
4738 10112 1.057285 CGTTACTCGCAAGCAGTTACG 59.943 52.381 15.64 15.64 40.75 3.18
4739 10113 1.389106 GTTACTCGCAAGCAGTTACGG 59.611 52.381 3.27 0.00 37.18 4.02
4740 10114 0.883153 TACTCGCAAGCAGTTACGGA 59.117 50.000 3.27 0.00 37.18 4.69
4741 10115 0.388649 ACTCGCAAGCAGTTACGGAG 60.389 55.000 0.00 0.00 37.18 4.63
4742 10116 0.388649 CTCGCAAGCAGTTACGGAGT 60.389 55.000 0.00 0.00 41.47 3.85
4743 10117 0.883153 TCGCAAGCAGTTACGGAGTA 59.117 50.000 0.00 0.00 39.10 2.59
4880 10264 3.419759 CGAGCCGTGGGGTTTTCG 61.420 66.667 0.00 0.00 31.55 3.46
4972 10637 3.319755 CATGGAGCTCGTTTTGCAAAAT 58.680 40.909 26.24 11.10 0.00 1.82
4974 10639 4.782019 TGGAGCTCGTTTTGCAAAATAT 57.218 36.364 26.24 11.50 0.00 1.28
4976 10641 6.449635 TGGAGCTCGTTTTGCAAAATATAT 57.550 33.333 26.24 12.49 0.00 0.86
4978 10643 8.165239 TGGAGCTCGTTTTGCAAAATATATAT 57.835 30.769 26.24 12.01 0.00 0.86
5065 10760 8.786937 ACTAATTTGATTATTTGCATGCTACG 57.213 30.769 20.33 0.00 0.00 3.51
5122 10817 8.424133 ACAAAGAAAAAGCCTATTTCAATCTGT 58.576 29.630 8.59 4.29 38.86 3.41
5303 10999 2.511145 GAAGCTCGGCCTCTGCAG 60.511 66.667 7.63 7.63 40.13 4.41
5341 11037 5.612725 TCACCTTCTTTCTTGGCAAAAAT 57.387 34.783 0.00 0.00 0.00 1.82
5345 11041 8.043710 TCACCTTCTTTCTTGGCAAAAATTAAA 58.956 29.630 0.00 0.00 0.00 1.52
5636 11355 0.910088 CCCCCTTCCCGTTTCTCTCT 60.910 60.000 0.00 0.00 0.00 3.10
5642 11361 0.251832 TCCCGTTTCTCTCTGCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
5912 11666 1.341156 CGGCCCATCTTTCCCTCTCT 61.341 60.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.178797 TGCTTCCTCTTAGTAATTGACTGC 58.821 41.667 0.00 0.00 39.39 4.40
3 4 7.148340 CCTTTGCTTCCTCTTAGTAATTGACTG 60.148 40.741 0.00 0.00 39.39 3.51
5 6 6.879458 TCCTTTGCTTCCTCTTAGTAATTGAC 59.121 38.462 0.00 0.00 0.00 3.18
6 7 7.016153 TCCTTTGCTTCCTCTTAGTAATTGA 57.984 36.000 0.00 0.00 0.00 2.57
7 8 7.148171 CCTTCCTTTGCTTCCTCTTAGTAATTG 60.148 40.741 0.00 0.00 0.00 2.32
9 10 6.215636 TCCTTCCTTTGCTTCCTCTTAGTAAT 59.784 38.462 0.00 0.00 0.00 1.89
11 12 5.091552 TCCTTCCTTTGCTTCCTCTTAGTA 58.908 41.667 0.00 0.00 0.00 1.82
12 13 3.910627 TCCTTCCTTTGCTTCCTCTTAGT 59.089 43.478 0.00 0.00 0.00 2.24
13 14 4.512484 CTCCTTCCTTTGCTTCCTCTTAG 58.488 47.826 0.00 0.00 0.00 2.18
14 15 3.307762 GCTCCTTCCTTTGCTTCCTCTTA 60.308 47.826 0.00 0.00 0.00 2.10
15 16 2.554124 GCTCCTTCCTTTGCTTCCTCTT 60.554 50.000 0.00 0.00 0.00 2.85
16 17 1.004161 GCTCCTTCCTTTGCTTCCTCT 59.996 52.381 0.00 0.00 0.00 3.69
17 18 1.004161 AGCTCCTTCCTTTGCTTCCTC 59.996 52.381 0.00 0.00 30.96 3.71
18 19 1.071434 AGCTCCTTCCTTTGCTTCCT 58.929 50.000 0.00 0.00 30.96 3.36
19 20 1.172175 CAGCTCCTTCCTTTGCTTCC 58.828 55.000 0.00 0.00 33.03 3.46
20 21 1.172175 CCAGCTCCTTCCTTTGCTTC 58.828 55.000 0.00 0.00 33.03 3.86
21 22 0.897401 GCCAGCTCCTTCCTTTGCTT 60.897 55.000 0.00 0.00 33.03 3.91
22 23 1.303970 GCCAGCTCCTTCCTTTGCT 60.304 57.895 0.00 0.00 36.04 3.91
23 24 2.346541 GGCCAGCTCCTTCCTTTGC 61.347 63.158 0.00 0.00 0.00 3.68
24 25 2.042831 CGGCCAGCTCCTTCCTTTG 61.043 63.158 2.24 0.00 0.00 2.77
25 26 1.779061 TTCGGCCAGCTCCTTCCTTT 61.779 55.000 2.24 0.00 0.00 3.11
26 27 2.190488 CTTCGGCCAGCTCCTTCCTT 62.190 60.000 2.24 0.00 0.00 3.36
27 28 2.607750 TTCGGCCAGCTCCTTCCT 60.608 61.111 2.24 0.00 0.00 3.36
28 29 2.124942 CTTCGGCCAGCTCCTTCC 60.125 66.667 2.24 0.00 0.00 3.46
29 30 1.614241 TACCTTCGGCCAGCTCCTTC 61.614 60.000 2.24 0.00 0.00 3.46
30 31 1.612442 TACCTTCGGCCAGCTCCTT 60.612 57.895 2.24 0.00 0.00 3.36
31 32 2.038975 TACCTTCGGCCAGCTCCT 59.961 61.111 2.24 0.00 0.00 3.69
32 33 2.501610 CTACCTTCGGCCAGCTCC 59.498 66.667 2.24 0.00 0.00 4.70
33 34 2.202946 GCTACCTTCGGCCAGCTC 60.203 66.667 2.24 0.00 33.13 4.09
34 35 4.148825 CGCTACCTTCGGCCAGCT 62.149 66.667 2.24 0.00 33.54 4.24
36 37 4.530857 CCCGCTACCTTCGGCCAG 62.531 72.222 2.24 0.00 45.19 4.85
41 42 3.927163 AACACGCCCGCTACCTTCG 62.927 63.158 0.00 0.00 0.00 3.79
42 43 0.390209 TAAACACGCCCGCTACCTTC 60.390 55.000 0.00 0.00 0.00 3.46
43 44 0.390735 CTAAACACGCCCGCTACCTT 60.391 55.000 0.00 0.00 0.00 3.50
44 45 1.217244 CTAAACACGCCCGCTACCT 59.783 57.895 0.00 0.00 0.00 3.08
45 46 2.458610 GCTAAACACGCCCGCTACC 61.459 63.158 0.00 0.00 0.00 3.18
46 47 2.795389 CGCTAAACACGCCCGCTAC 61.795 63.158 0.00 0.00 0.00 3.58
47 48 2.507547 CGCTAAACACGCCCGCTA 60.508 61.111 0.00 0.00 0.00 4.26
50 51 2.736682 CTTCCGCTAAACACGCCCG 61.737 63.158 0.00 0.00 0.00 6.13
51 52 3.035576 GCTTCCGCTAAACACGCCC 62.036 63.158 0.00 0.00 0.00 6.13
52 53 2.240612 CTGCTTCCGCTAAACACGCC 62.241 60.000 0.00 0.00 36.97 5.68
53 54 1.132640 CTGCTTCCGCTAAACACGC 59.867 57.895 0.00 0.00 36.97 5.34
54 55 0.865769 AACTGCTTCCGCTAAACACG 59.134 50.000 0.00 0.00 36.97 4.49
55 56 2.803956 TGTAACTGCTTCCGCTAAACAC 59.196 45.455 0.00 0.00 36.97 3.32
56 57 3.064207 CTGTAACTGCTTCCGCTAAACA 58.936 45.455 0.00 0.00 36.97 2.83
57 58 2.415512 CCTGTAACTGCTTCCGCTAAAC 59.584 50.000 0.00 0.00 36.97 2.01
58 59 2.300723 TCCTGTAACTGCTTCCGCTAAA 59.699 45.455 0.00 0.00 36.97 1.85
59 60 1.897133 TCCTGTAACTGCTTCCGCTAA 59.103 47.619 0.00 0.00 36.97 3.09
60 61 1.552578 TCCTGTAACTGCTTCCGCTA 58.447 50.000 0.00 0.00 36.97 4.26
61 62 0.685097 TTCCTGTAACTGCTTCCGCT 59.315 50.000 0.00 0.00 36.97 5.52
62 63 1.079503 CTTCCTGTAACTGCTTCCGC 58.920 55.000 0.00 0.00 0.00 5.54
63 64 1.079503 GCTTCCTGTAACTGCTTCCG 58.920 55.000 0.00 0.00 0.00 4.30
64 65 2.185004 TGCTTCCTGTAACTGCTTCC 57.815 50.000 0.00 0.00 0.00 3.46
65 66 3.753272 TGATTGCTTCCTGTAACTGCTTC 59.247 43.478 0.00 0.00 0.00 3.86
66 67 3.503748 GTGATTGCTTCCTGTAACTGCTT 59.496 43.478 0.00 0.00 0.00 3.91
67 68 3.077359 GTGATTGCTTCCTGTAACTGCT 58.923 45.455 0.00 0.00 0.00 4.24
68 69 3.077359 AGTGATTGCTTCCTGTAACTGC 58.923 45.455 0.00 0.00 0.00 4.40
69 70 5.695851 AAAGTGATTGCTTCCTGTAACTG 57.304 39.130 0.00 0.00 0.00 3.16
70 71 9.113838 CATATAAAGTGATTGCTTCCTGTAACT 57.886 33.333 0.00 0.00 0.00 2.24
71 72 7.857885 GCATATAAAGTGATTGCTTCCTGTAAC 59.142 37.037 0.00 0.00 0.00 2.50
72 73 7.254761 CGCATATAAAGTGATTGCTTCCTGTAA 60.255 37.037 0.00 0.00 0.00 2.41
73 74 6.202762 CGCATATAAAGTGATTGCTTCCTGTA 59.797 38.462 0.00 0.00 0.00 2.74
74 75 5.008019 CGCATATAAAGTGATTGCTTCCTGT 59.992 40.000 0.00 0.00 0.00 4.00
75 76 5.446709 CGCATATAAAGTGATTGCTTCCTG 58.553 41.667 0.00 0.00 0.00 3.86
76 77 4.516698 CCGCATATAAAGTGATTGCTTCCT 59.483 41.667 0.00 0.00 0.00 3.36
77 78 4.320494 CCCGCATATAAAGTGATTGCTTCC 60.320 45.833 0.00 0.00 0.00 3.46
78 79 4.787598 CCCGCATATAAAGTGATTGCTTC 58.212 43.478 0.00 0.00 0.00 3.86
79 80 3.004734 GCCCGCATATAAAGTGATTGCTT 59.995 43.478 0.00 0.00 0.00 3.91
80 81 2.554032 GCCCGCATATAAAGTGATTGCT 59.446 45.455 0.00 0.00 0.00 3.91
81 82 2.351738 GGCCCGCATATAAAGTGATTGC 60.352 50.000 0.00 0.00 0.00 3.56
82 83 2.884012 TGGCCCGCATATAAAGTGATTG 59.116 45.455 0.00 0.00 0.00 2.67
83 84 3.222173 TGGCCCGCATATAAAGTGATT 57.778 42.857 0.00 0.00 0.00 2.57
84 85 2.949177 TGGCCCGCATATAAAGTGAT 57.051 45.000 0.00 0.00 0.00 3.06
85 86 2.949177 ATGGCCCGCATATAAAGTGA 57.051 45.000 0.00 0.00 0.00 3.41
86 87 3.674997 AGTATGGCCCGCATATAAAGTG 58.325 45.455 0.00 0.00 0.00 3.16
87 88 4.775780 TCTAGTATGGCCCGCATATAAAGT 59.224 41.667 0.00 0.00 0.00 2.66
88 89 5.339008 TCTAGTATGGCCCGCATATAAAG 57.661 43.478 0.00 0.00 0.00 1.85
89 90 5.482526 TCTTCTAGTATGGCCCGCATATAAA 59.517 40.000 0.00 0.00 0.00 1.40
90 91 5.020795 TCTTCTAGTATGGCCCGCATATAA 58.979 41.667 0.00 0.00 0.00 0.98
91 92 4.606210 TCTTCTAGTATGGCCCGCATATA 58.394 43.478 0.00 0.00 0.00 0.86
92 93 3.441101 TCTTCTAGTATGGCCCGCATAT 58.559 45.455 0.00 0.00 0.00 1.78
93 94 2.884320 TCTTCTAGTATGGCCCGCATA 58.116 47.619 0.00 0.00 0.00 3.14
94 95 1.717032 TCTTCTAGTATGGCCCGCAT 58.283 50.000 0.00 0.00 0.00 4.73
95 96 1.618837 GATCTTCTAGTATGGCCCGCA 59.381 52.381 0.00 0.00 0.00 5.69
96 97 1.402984 CGATCTTCTAGTATGGCCCGC 60.403 57.143 0.00 0.00 0.00 6.13
97 98 1.202582 CCGATCTTCTAGTATGGCCCG 59.797 57.143 0.00 0.00 0.00 6.13
98 99 2.231721 GTCCGATCTTCTAGTATGGCCC 59.768 54.545 0.00 0.00 0.00 5.80
99 100 2.095161 CGTCCGATCTTCTAGTATGGCC 60.095 54.545 0.00 0.00 0.00 5.36
100 101 2.095161 CCGTCCGATCTTCTAGTATGGC 60.095 54.545 0.00 0.00 0.00 4.40
101 102 3.147629 ACCGTCCGATCTTCTAGTATGG 58.852 50.000 0.00 0.00 0.00 2.74
102 103 4.832590 AACCGTCCGATCTTCTAGTATG 57.167 45.455 0.00 0.00 0.00 2.39
103 104 5.469421 CAGTAACCGTCCGATCTTCTAGTAT 59.531 44.000 0.00 0.00 0.00 2.12
104 105 4.813161 CAGTAACCGTCCGATCTTCTAGTA 59.187 45.833 0.00 0.00 0.00 1.82
105 106 3.626670 CAGTAACCGTCCGATCTTCTAGT 59.373 47.826 0.00 0.00 0.00 2.57
106 107 3.626670 ACAGTAACCGTCCGATCTTCTAG 59.373 47.826 0.00 0.00 0.00 2.43
107 108 3.376234 CACAGTAACCGTCCGATCTTCTA 59.624 47.826 0.00 0.00 0.00 2.10
108 109 2.163815 CACAGTAACCGTCCGATCTTCT 59.836 50.000 0.00 0.00 0.00 2.85
109 110 2.527100 CACAGTAACCGTCCGATCTTC 58.473 52.381 0.00 0.00 0.00 2.87
110 111 1.403780 GCACAGTAACCGTCCGATCTT 60.404 52.381 0.00 0.00 0.00 2.40
111 112 0.172803 GCACAGTAACCGTCCGATCT 59.827 55.000 0.00 0.00 0.00 2.75
112 113 0.172803 AGCACAGTAACCGTCCGATC 59.827 55.000 0.00 0.00 0.00 3.69
113 114 0.606604 AAGCACAGTAACCGTCCGAT 59.393 50.000 0.00 0.00 0.00 4.18
114 115 0.038892 GAAGCACAGTAACCGTCCGA 60.039 55.000 0.00 0.00 0.00 4.55
115 116 0.038526 AGAAGCACAGTAACCGTCCG 60.039 55.000 0.00 0.00 0.00 4.79
116 117 3.445857 GATAGAAGCACAGTAACCGTCC 58.554 50.000 0.00 0.00 0.00 4.79
117 118 3.130693 AGGATAGAAGCACAGTAACCGTC 59.869 47.826 0.00 0.00 0.00 4.79
118 119 3.097614 AGGATAGAAGCACAGTAACCGT 58.902 45.455 0.00 0.00 0.00 4.83
119 120 3.802948 AGGATAGAAGCACAGTAACCG 57.197 47.619 0.00 0.00 0.00 4.44
120 121 4.608951 CGTAGGATAGAAGCACAGTAACC 58.391 47.826 0.00 0.00 0.00 2.85
138 139 3.607741 TCAGACTAGTCCAAGACCGTAG 58.392 50.000 19.38 0.00 32.18 3.51
139 140 3.708403 TCAGACTAGTCCAAGACCGTA 57.292 47.619 19.38 0.00 32.18 4.02
140 141 2.581216 TCAGACTAGTCCAAGACCGT 57.419 50.000 19.38 0.00 32.18 4.83
141 142 4.882427 TCTTATCAGACTAGTCCAAGACCG 59.118 45.833 19.38 7.49 32.18 4.79
142 143 5.221165 GCTCTTATCAGACTAGTCCAAGACC 60.221 48.000 19.38 10.33 32.18 3.85
143 144 5.358442 TGCTCTTATCAGACTAGTCCAAGAC 59.642 44.000 19.38 15.03 0.00 3.01
144 145 5.510430 TGCTCTTATCAGACTAGTCCAAGA 58.490 41.667 19.38 18.73 0.00 3.02
145 146 5.843673 TGCTCTTATCAGACTAGTCCAAG 57.156 43.478 19.38 15.98 0.00 3.61
146 147 5.127845 CCTTGCTCTTATCAGACTAGTCCAA 59.872 44.000 19.38 11.32 0.00 3.53
147 148 4.646945 CCTTGCTCTTATCAGACTAGTCCA 59.353 45.833 19.38 6.93 0.00 4.02
148 149 4.038642 CCCTTGCTCTTATCAGACTAGTCC 59.961 50.000 19.38 1.81 0.00 3.85
149 150 4.890581 TCCCTTGCTCTTATCAGACTAGTC 59.109 45.833 15.41 15.41 0.00 2.59
150 151 4.873010 TCCCTTGCTCTTATCAGACTAGT 58.127 43.478 0.00 0.00 0.00 2.57
151 152 5.538053 TGATCCCTTGCTCTTATCAGACTAG 59.462 44.000 0.00 0.00 0.00 2.57
152 153 5.458595 TGATCCCTTGCTCTTATCAGACTA 58.541 41.667 0.00 0.00 0.00 2.59
153 154 4.293494 TGATCCCTTGCTCTTATCAGACT 58.707 43.478 0.00 0.00 0.00 3.24
154 155 4.100808 ACTGATCCCTTGCTCTTATCAGAC 59.899 45.833 15.44 0.00 44.01 3.51
155 156 4.293494 ACTGATCCCTTGCTCTTATCAGA 58.707 43.478 15.44 0.00 44.01 3.27
156 157 4.686191 ACTGATCCCTTGCTCTTATCAG 57.314 45.455 8.65 8.65 45.78 2.90
157 158 5.211973 ACTACTGATCCCTTGCTCTTATCA 58.788 41.667 0.00 0.00 0.00 2.15
158 159 5.538433 AGACTACTGATCCCTTGCTCTTATC 59.462 44.000 0.00 0.00 0.00 1.75
159 160 5.304101 CAGACTACTGATCCCTTGCTCTTAT 59.696 44.000 0.00 0.00 46.03 1.73
160 161 4.646945 CAGACTACTGATCCCTTGCTCTTA 59.353 45.833 0.00 0.00 46.03 2.10
161 162 3.450457 CAGACTACTGATCCCTTGCTCTT 59.550 47.826 0.00 0.00 46.03 2.85
162 163 3.030291 CAGACTACTGATCCCTTGCTCT 58.970 50.000 0.00 0.00 46.03 4.09
163 164 2.102252 CCAGACTACTGATCCCTTGCTC 59.898 54.545 0.00 0.00 46.03 4.26
164 165 2.114616 CCAGACTACTGATCCCTTGCT 58.885 52.381 0.00 0.00 46.03 3.91
165 166 1.834263 ACCAGACTACTGATCCCTTGC 59.166 52.381 0.00 0.00 46.03 4.01
166 167 3.810310 GACCAGACTACTGATCCCTTG 57.190 52.381 0.00 0.00 46.03 3.61
171 172 2.888414 GCTAGGGACCAGACTACTGATC 59.112 54.545 0.00 0.00 46.03 2.92
172 173 2.750135 CGCTAGGGACCAGACTACTGAT 60.750 54.545 0.00 0.00 46.03 2.90
173 174 1.408405 CGCTAGGGACCAGACTACTGA 60.408 57.143 0.00 0.00 46.03 3.41
174 175 1.025812 CGCTAGGGACCAGACTACTG 58.974 60.000 0.00 0.00 43.12 2.74
175 176 0.752376 GCGCTAGGGACCAGACTACT 60.752 60.000 11.61 0.00 0.00 2.57
176 177 0.752376 AGCGCTAGGGACCAGACTAC 60.752 60.000 8.99 0.00 0.00 2.73
177 178 0.752009 CAGCGCTAGGGACCAGACTA 60.752 60.000 10.99 0.00 0.00 2.59
178 179 2.055042 CAGCGCTAGGGACCAGACT 61.055 63.158 10.99 0.00 0.00 3.24
179 180 2.496817 CAGCGCTAGGGACCAGAC 59.503 66.667 10.99 0.00 0.00 3.51
180 181 3.461773 GCAGCGCTAGGGACCAGA 61.462 66.667 10.99 0.00 0.00 3.86
181 182 4.537433 GGCAGCGCTAGGGACCAG 62.537 72.222 10.99 0.00 0.00 4.00
184 185 1.759459 AATAGGGCAGCGCTAGGGAC 61.759 60.000 22.43 0.00 32.65 4.46
185 186 1.054406 AAATAGGGCAGCGCTAGGGA 61.054 55.000 22.43 3.80 32.65 4.20
186 187 0.179018 AAAATAGGGCAGCGCTAGGG 60.179 55.000 22.43 0.00 32.65 3.53
187 188 2.543777 TAAAATAGGGCAGCGCTAGG 57.456 50.000 22.43 0.00 32.65 3.02
188 189 3.003378 GGTTTAAAATAGGGCAGCGCTAG 59.997 47.826 22.43 5.98 32.65 3.42
189 190 2.946990 GGTTTAAAATAGGGCAGCGCTA 59.053 45.455 20.63 20.63 33.62 4.26
190 191 1.749063 GGTTTAAAATAGGGCAGCGCT 59.251 47.619 17.30 17.30 0.00 5.92
191 192 1.533129 CGGTTTAAAATAGGGCAGCGC 60.533 52.381 0.00 0.00 0.00 5.92
192 193 2.011222 TCGGTTTAAAATAGGGCAGCG 58.989 47.619 0.00 0.00 0.00 5.18
193 194 3.014623 AGTCGGTTTAAAATAGGGCAGC 58.985 45.455 0.00 0.00 0.00 5.25
194 195 3.308866 CGAGTCGGTTTAAAATAGGGCAG 59.691 47.826 4.10 0.00 0.00 4.85
195 196 3.055963 TCGAGTCGGTTTAAAATAGGGCA 60.056 43.478 13.54 0.00 0.00 5.36
196 197 3.524541 TCGAGTCGGTTTAAAATAGGGC 58.475 45.455 13.54 0.00 0.00 5.19
197 198 5.002464 TCTCGAGTCGGTTTAAAATAGGG 57.998 43.478 13.54 0.00 0.00 3.53
198 199 6.956299 TTTCTCGAGTCGGTTTAAAATAGG 57.044 37.500 13.54 0.00 0.00 2.57
199 200 7.491696 AGGATTTCTCGAGTCGGTTTAAAATAG 59.508 37.037 13.54 0.00 0.00 1.73
200 201 7.325694 AGGATTTCTCGAGTCGGTTTAAAATA 58.674 34.615 13.54 0.00 0.00 1.40
201 202 6.171213 AGGATTTCTCGAGTCGGTTTAAAAT 58.829 36.000 13.54 8.15 0.00 1.82
202 203 5.544650 AGGATTTCTCGAGTCGGTTTAAAA 58.455 37.500 13.54 3.22 0.00 1.52
203 204 5.143376 AGGATTTCTCGAGTCGGTTTAAA 57.857 39.130 13.54 8.55 0.00 1.52
204 205 4.796038 AGGATTTCTCGAGTCGGTTTAA 57.204 40.909 13.54 2.94 0.00 1.52
205 206 4.701651 TGTAGGATTTCTCGAGTCGGTTTA 59.298 41.667 13.54 0.00 0.00 2.01
206 207 3.508793 TGTAGGATTTCTCGAGTCGGTTT 59.491 43.478 13.54 0.00 0.00 3.27
207 208 3.087031 TGTAGGATTTCTCGAGTCGGTT 58.913 45.455 13.54 0.00 0.00 4.44
208 209 2.683867 CTGTAGGATTTCTCGAGTCGGT 59.316 50.000 13.54 0.00 0.00 4.69
209 210 2.943690 TCTGTAGGATTTCTCGAGTCGG 59.056 50.000 13.54 3.60 0.00 4.79
210 211 3.872182 TCTCTGTAGGATTTCTCGAGTCG 59.128 47.826 13.13 6.09 0.00 4.18
211 212 5.048991 GGATCTCTGTAGGATTTCTCGAGTC 60.049 48.000 13.13 2.37 0.00 3.36
212 213 4.825085 GGATCTCTGTAGGATTTCTCGAGT 59.175 45.833 13.13 0.00 0.00 4.18
213 214 4.217550 GGGATCTCTGTAGGATTTCTCGAG 59.782 50.000 5.93 5.93 0.00 4.04
214 215 4.145807 GGGATCTCTGTAGGATTTCTCGA 58.854 47.826 0.00 0.00 0.00 4.04
215 216 3.891977 TGGGATCTCTGTAGGATTTCTCG 59.108 47.826 0.00 0.00 0.00 4.04
216 217 5.365314 AGTTGGGATCTCTGTAGGATTTCTC 59.635 44.000 0.00 0.00 0.00 2.87
217 218 5.284582 AGTTGGGATCTCTGTAGGATTTCT 58.715 41.667 0.00 0.00 0.00 2.52
218 219 5.606505 GAGTTGGGATCTCTGTAGGATTTC 58.393 45.833 0.00 0.00 0.00 2.17
219 220 4.100189 CGAGTTGGGATCTCTGTAGGATTT 59.900 45.833 0.00 0.00 0.00 2.17
220 221 3.639094 CGAGTTGGGATCTCTGTAGGATT 59.361 47.826 0.00 0.00 0.00 3.01
221 222 3.226777 CGAGTTGGGATCTCTGTAGGAT 58.773 50.000 0.00 0.00 0.00 3.24
222 223 2.656002 CGAGTTGGGATCTCTGTAGGA 58.344 52.381 0.00 0.00 0.00 2.94
223 224 1.067821 GCGAGTTGGGATCTCTGTAGG 59.932 57.143 0.00 0.00 0.00 3.18
224 225 1.067821 GGCGAGTTGGGATCTCTGTAG 59.932 57.143 0.00 0.00 0.00 2.74
225 226 1.112113 GGCGAGTTGGGATCTCTGTA 58.888 55.000 0.00 0.00 0.00 2.74
226 227 1.617947 GGGCGAGTTGGGATCTCTGT 61.618 60.000 0.00 0.00 0.00 3.41
227 228 1.144936 GGGCGAGTTGGGATCTCTG 59.855 63.158 0.00 0.00 0.00 3.35
228 229 0.261991 TAGGGCGAGTTGGGATCTCT 59.738 55.000 0.00 0.00 0.00 3.10
229 230 1.273886 GATAGGGCGAGTTGGGATCTC 59.726 57.143 0.00 0.00 0.00 2.75
230 231 1.133009 AGATAGGGCGAGTTGGGATCT 60.133 52.381 0.00 0.00 0.00 2.75
231 232 1.343069 AGATAGGGCGAGTTGGGATC 58.657 55.000 0.00 0.00 0.00 3.36
232 233 2.696526 TAGATAGGGCGAGTTGGGAT 57.303 50.000 0.00 0.00 0.00 3.85
233 234 2.110188 AGATAGATAGGGCGAGTTGGGA 59.890 50.000 0.00 0.00 0.00 4.37
234 235 2.530701 AGATAGATAGGGCGAGTTGGG 58.469 52.381 0.00 0.00 0.00 4.12
235 236 4.608948 AAAGATAGATAGGGCGAGTTGG 57.391 45.455 0.00 0.00 0.00 3.77
236 237 9.877178 ATTAATAAAGATAGATAGGGCGAGTTG 57.123 33.333 0.00 0.00 0.00 3.16
237 238 9.877178 CATTAATAAAGATAGATAGGGCGAGTT 57.123 33.333 0.00 0.00 0.00 3.01
238 239 8.478877 CCATTAATAAAGATAGATAGGGCGAGT 58.521 37.037 0.00 0.00 0.00 4.18
239 240 7.439655 GCCATTAATAAAGATAGATAGGGCGAG 59.560 40.741 0.00 0.00 0.00 5.03
240 241 7.272978 GCCATTAATAAAGATAGATAGGGCGA 58.727 38.462 0.00 0.00 0.00 5.54
241 242 7.484035 GCCATTAATAAAGATAGATAGGGCG 57.516 40.000 0.00 0.00 0.00 6.13
242 243 6.483640 CCGCCATTAATAAAGATAGATAGGGC 59.516 42.308 0.00 0.00 0.00 5.19
243 244 7.792032 TCCGCCATTAATAAAGATAGATAGGG 58.208 38.462 0.00 0.00 0.00 3.53
244 245 9.319143 CTTCCGCCATTAATAAAGATAGATAGG 57.681 37.037 0.00 0.00 0.00 2.57
245 246 9.319143 CCTTCCGCCATTAATAAAGATAGATAG 57.681 37.037 0.00 0.00 0.00 2.08
246 247 9.042450 TCCTTCCGCCATTAATAAAGATAGATA 57.958 33.333 0.00 0.00 0.00 1.98
247 248 7.824779 GTCCTTCCGCCATTAATAAAGATAGAT 59.175 37.037 0.00 0.00 0.00 1.98
248 249 7.016268 AGTCCTTCCGCCATTAATAAAGATAGA 59.984 37.037 0.00 0.00 0.00 1.98
249 250 7.162082 AGTCCTTCCGCCATTAATAAAGATAG 58.838 38.462 0.00 0.00 0.00 2.08
250 251 7.074653 AGTCCTTCCGCCATTAATAAAGATA 57.925 36.000 0.00 0.00 0.00 1.98
251 252 5.941788 AGTCCTTCCGCCATTAATAAAGAT 58.058 37.500 0.00 0.00 0.00 2.40
252 253 5.367945 AGTCCTTCCGCCATTAATAAAGA 57.632 39.130 0.00 0.00 0.00 2.52
253 254 6.934645 TGATAGTCCTTCCGCCATTAATAAAG 59.065 38.462 0.00 0.00 0.00 1.85
254 255 6.833041 TGATAGTCCTTCCGCCATTAATAAA 58.167 36.000 0.00 0.00 0.00 1.40
255 256 6.428083 TGATAGTCCTTCCGCCATTAATAA 57.572 37.500 0.00 0.00 0.00 1.40
256 257 6.440647 AGATGATAGTCCTTCCGCCATTAATA 59.559 38.462 0.00 0.00 0.00 0.98
257 258 4.974645 TGATAGTCCTTCCGCCATTAAT 57.025 40.909 0.00 0.00 0.00 1.40
258 259 4.593206 AGATGATAGTCCTTCCGCCATTAA 59.407 41.667 0.00 0.00 0.00 1.40
259 260 4.160329 AGATGATAGTCCTTCCGCCATTA 58.840 43.478 0.00 0.00 0.00 1.90
260 261 2.975489 AGATGATAGTCCTTCCGCCATT 59.025 45.455 0.00 0.00 0.00 3.16
261 262 2.564947 GAGATGATAGTCCTTCCGCCAT 59.435 50.000 0.00 0.00 0.00 4.40
262 263 1.964223 GAGATGATAGTCCTTCCGCCA 59.036 52.381 0.00 0.00 0.00 5.69
263 264 2.243810 AGAGATGATAGTCCTTCCGCC 58.756 52.381 0.00 0.00 0.00 6.13
264 265 5.184096 TCAATAGAGATGATAGTCCTTCCGC 59.816 44.000 0.00 0.00 0.00 5.54
265 266 6.825944 TCAATAGAGATGATAGTCCTTCCG 57.174 41.667 0.00 0.00 0.00 4.30
295 296 6.043411 CCAATACTGCTAGAGTTACCACTTC 58.957 44.000 0.00 0.00 35.96 3.01
313 314 5.153950 AGGAGACACTTTCAGTCCAATAC 57.846 43.478 0.00 0.00 36.68 1.89
324 325 4.408276 TCTAGCACAGTAGGAGACACTTT 58.592 43.478 0.00 0.00 0.00 2.66
330 331 3.264706 ACTCACTCTAGCACAGTAGGAGA 59.735 47.826 0.00 0.00 0.00 3.71
336 337 4.881019 AAATGACTCACTCTAGCACAGT 57.119 40.909 0.00 0.00 0.00 3.55
392 395 1.021202 TTTCTTGCACCCGTTCACTG 58.979 50.000 0.00 0.00 0.00 3.66
403 406 2.892215 TGCACCTCAATCATTTCTTGCA 59.108 40.909 0.00 0.00 36.42 4.08
465 468 8.231837 TGTTCTCGTGGTTTTATAAAAGTATGC 58.768 33.333 10.92 0.00 0.00 3.14
494 497 9.739276 AATGTTCCTCTCATGAAGTATTAACAA 57.261 29.630 0.00 0.00 0.00 2.83
499 502 9.300681 TGAAAAATGTTCCTCTCATGAAGTATT 57.699 29.630 0.00 0.00 0.00 1.89
607 612 8.237811 TCTAATGGCTTCTGTTTTTCTTTTCT 57.762 30.769 0.00 0.00 0.00 2.52
608 613 8.871686 TTCTAATGGCTTCTGTTTTTCTTTTC 57.128 30.769 0.00 0.00 0.00 2.29
609 614 8.478066 ACTTCTAATGGCTTCTGTTTTTCTTTT 58.522 29.630 0.00 0.00 0.00 2.27
610 615 8.011844 ACTTCTAATGGCTTCTGTTTTTCTTT 57.988 30.769 0.00 0.00 0.00 2.52
611 616 7.588497 ACTTCTAATGGCTTCTGTTTTTCTT 57.412 32.000 0.00 0.00 0.00 2.52
612 617 7.588497 AACTTCTAATGGCTTCTGTTTTTCT 57.412 32.000 0.00 0.00 0.00 2.52
613 618 8.648557 AAAACTTCTAATGGCTTCTGTTTTTC 57.351 30.769 0.00 0.00 34.18 2.29
614 619 7.710907 GGAAAACTTCTAATGGCTTCTGTTTTT 59.289 33.333 0.00 0.00 36.78 1.94
621 626 3.440522 AGCGGAAAACTTCTAATGGCTTC 59.559 43.478 0.00 0.00 0.00 3.86
624 629 3.939592 ACTAGCGGAAAACTTCTAATGGC 59.060 43.478 0.00 0.00 0.00 4.40
641 646 3.184541 CATGCTCAAAAATGCCACTAGC 58.815 45.455 0.00 0.00 44.14 3.42
645 650 2.733026 GACACATGCTCAAAAATGCCAC 59.267 45.455 0.00 0.00 0.00 5.01
655 660 5.151297 TCAATCTGTTAGACACATGCTCA 57.849 39.130 0.00 0.00 33.76 4.26
656 661 5.814188 TCATCAATCTGTTAGACACATGCTC 59.186 40.000 0.00 0.00 33.76 4.26
699 704 6.089016 CACTGCTCAATTTTGTCATTAGCAAG 59.911 38.462 0.00 0.00 37.97 4.01
702 707 4.860907 CCACTGCTCAATTTTGTCATTAGC 59.139 41.667 0.00 0.00 0.00 3.09
706 711 3.499338 TCCCACTGCTCAATTTTGTCAT 58.501 40.909 0.00 0.00 0.00 3.06
720 725 4.801330 TGTCACTAGTTGTATCCCACTG 57.199 45.455 0.00 0.00 0.00 3.66
755 760 8.947940 CACTTAAATGCGCAATAATTAGAAGAC 58.052 33.333 17.11 0.00 0.00 3.01
756 761 8.888716 TCACTTAAATGCGCAATAATTAGAAGA 58.111 29.630 17.11 8.42 0.00 2.87
771 807 6.486253 TGTCTGATTGAGTCACTTAAATGC 57.514 37.500 0.00 0.00 32.22 3.56
856 892 7.667043 AAGTTATATGTCAGTCGCTCAAAAA 57.333 32.000 0.00 0.00 0.00 1.94
857 893 8.248253 TCTAAGTTATATGTCAGTCGCTCAAAA 58.752 33.333 0.00 0.00 0.00 2.44
861 898 7.324856 CACATCTAAGTTATATGTCAGTCGCTC 59.675 40.741 10.16 0.00 31.60 5.03
876 913 5.627040 GCCCTAAGTAGTGCACATCTAAGTT 60.627 44.000 21.04 9.95 0.00 2.66
888 925 5.468540 TGCTATATGTGCCCTAAGTAGTG 57.531 43.478 1.04 0.00 0.00 2.74
889 926 6.494666 TTTGCTATATGTGCCCTAAGTAGT 57.505 37.500 1.04 0.00 0.00 2.73
890 927 7.148573 CGATTTTGCTATATGTGCCCTAAGTAG 60.149 40.741 1.04 0.00 0.00 2.57
905 1352 8.846943 ATTTTTCCCTTTTTCGATTTTGCTAT 57.153 26.923 0.00 0.00 0.00 2.97
906 1353 9.765795 TTATTTTTCCCTTTTTCGATTTTGCTA 57.234 25.926 0.00 0.00 0.00 3.49
929 1376 5.163374 CGGCCCAGTAGGTACTTTTAGTTAT 60.163 44.000 0.00 0.00 41.75 1.89
936 1383 1.269703 CCCGGCCCAGTAGGTACTTT 61.270 60.000 0.00 0.00 41.75 2.66
962 1409 2.032528 TCGCTTCAAGGCACCCTG 59.967 61.111 0.00 0.00 32.13 4.45
971 1418 0.944311 GGAGTGTTCGCTCGCTTCAA 60.944 55.000 7.19 0.00 36.41 2.69
1042 4191 0.036952 CCATACCTCCGCCATAGCAG 60.037 60.000 0.00 0.00 39.83 4.24
1075 4224 6.393990 CATCTGGAACCCTAGAATCTATTCG 58.606 44.000 0.00 0.00 41.56 3.34
1258 4422 1.480954 GTCTCCTCCTTGAATGCCGTA 59.519 52.381 0.00 0.00 0.00 4.02
1318 4482 0.459899 TGTAGATGATGTTCGCGGCT 59.540 50.000 6.13 0.00 0.00 5.52
1322 4486 2.351726 GGGTGTTGTAGATGATGTTCGC 59.648 50.000 0.00 0.00 0.00 4.70
1540 4711 3.517100 TGATTTGGAAGGAGGAGAGACAG 59.483 47.826 0.00 0.00 0.00 3.51
1711 4882 7.973944 GGGTTGAATACACAGGTGAAATTATTC 59.026 37.037 6.40 9.33 36.04 1.75
1988 5185 0.107214 ATGATGTTGGCGACGGGATT 60.107 50.000 0.00 0.00 0.00 3.01
2053 5250 5.236047 GGTACTGATCATGTCAAGCTCAATC 59.764 44.000 0.00 0.00 36.14 2.67
2054 5251 5.121811 GGTACTGATCATGTCAAGCTCAAT 58.878 41.667 0.00 0.00 36.14 2.57
2117 5318 4.201910 CGAAGTGCAGAGGAAAGAAACAAA 60.202 41.667 0.00 0.00 0.00 2.83
2189 5390 3.584733 AAAGTTCATATCCCCCAGAGC 57.415 47.619 0.00 0.00 0.00 4.09
2383 5590 4.759693 TGAAACATCTTTCTGGTAATGCGT 59.240 37.500 0.00 0.00 37.30 5.24
2518 5728 5.180868 CAGCACTGCTTTGACTTTCTTAGAT 59.819 40.000 0.00 0.00 36.40 1.98
2623 5854 3.104843 AGGAGCAAATCAGCGACTATC 57.895 47.619 0.00 0.00 40.15 2.08
2675 5911 4.153958 TGACGCCACAAATAACATGAAC 57.846 40.909 0.00 0.00 0.00 3.18
2800 6036 3.131709 TCAGCAAAGAAGAGTTCTGGG 57.868 47.619 0.00 0.00 40.59 4.45
3031 6367 3.496331 CAGGGAGTTGTGTGGGTAAATT 58.504 45.455 0.00 0.00 0.00 1.82
3035 6371 0.400815 ACCAGGGAGTTGTGTGGGTA 60.401 55.000 0.00 0.00 34.07 3.69
3088 6424 6.125327 TCAAAACTGCGACACTTATTTTGA 57.875 33.333 5.98 5.98 41.36 2.69
3253 6733 8.547481 TTAAGAATGTAGATCAGATGTGGGTA 57.453 34.615 0.00 0.00 0.00 3.69
3276 8182 4.458989 CAGCTTGTTAAACATCTGGGCTTA 59.541 41.667 0.00 0.00 30.48 3.09
3959 9266 3.054065 AGGCAAGGGATCAAAAGGAGTAG 60.054 47.826 0.00 0.00 0.00 2.57
4053 9374 2.606275 GCATAGAAGTGCGGTAGCC 58.394 57.895 0.00 0.00 44.33 3.93
4462 9810 3.449746 TTGAATGGGAATTCCTCCGTT 57.550 42.857 23.63 14.98 46.51 4.44
4464 9812 2.689983 CCTTTGAATGGGAATTCCTCCG 59.310 50.000 23.63 5.61 46.51 4.63
4742 10116 5.511202 CGGGGTACAACAAAGTAGGAAACTA 60.511 44.000 0.00 0.00 43.67 2.24
4876 10260 1.001974 AGTGTATGAGCTGGTGCGAAA 59.998 47.619 0.00 0.00 45.42 3.46
4880 10264 1.002366 CGAAGTGTATGAGCTGGTGC 58.998 55.000 0.00 0.00 40.05 5.01
5303 10999 0.238553 GTGAAGAGGCGAAAAGTGGC 59.761 55.000 0.00 0.00 0.00 5.01
5341 11037 6.294176 GCATGAAGAAAGAAGGAGCACTTTAA 60.294 38.462 0.00 0.00 40.21 1.52
5345 11041 3.080319 GCATGAAGAAAGAAGGAGCACT 58.920 45.455 0.00 0.00 0.00 4.40
5636 11355 0.035725 CTCCATGTTGAGCAGGAGCA 60.036 55.000 0.00 0.00 45.49 4.26
5642 11361 1.375908 GCCGACTCCATGTTGAGCA 60.376 57.895 0.00 0.00 35.72 4.26
5767 11517 2.202878 GCCCAGCGCTGACGATAA 60.203 61.111 38.06 0.00 43.93 1.75
5808 11558 5.334569 GCTGACAATAGGCGTTAAAACAGAA 60.335 40.000 0.00 0.00 0.00 3.02
5809 11559 4.153475 GCTGACAATAGGCGTTAAAACAGA 59.847 41.667 0.00 0.00 0.00 3.41
5810 11560 4.403453 GCTGACAATAGGCGTTAAAACAG 58.597 43.478 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.