Multiple sequence alignment - TraesCS2D01G456500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G456500 chr2D 100.000 4943 0 0 425 5367 564131130 564126188 0.000000e+00 9129.0
1 TraesCS2D01G456500 chr2D 100.000 165 0 0 5599 5763 564125956 564125792 7.250000e-79 305.0
2 TraesCS2D01G456500 chr2D 100.000 114 0 0 1 114 564131554 564131441 1.630000e-50 211.0
3 TraesCS2D01G456500 chr2D 95.745 47 2 0 1422 1468 615502590 615502544 6.190000e-10 76.8
4 TraesCS2D01G456500 chr2B 92.602 3974 175 45 477 4409 675460803 675456908 0.000000e+00 5600.0
5 TraesCS2D01G456500 chr2B 87.604 1323 98 33 3735 5044 675452852 675451583 0.000000e+00 1474.0
6 TraesCS2D01G456500 chr2B 87.771 646 43 18 4418 5059 675456847 675456234 0.000000e+00 723.0
7 TraesCS2D01G456500 chr2B 86.134 238 22 6 4747 4973 675215939 675216176 4.460000e-61 246.0
8 TraesCS2D01G456500 chr2B 91.765 85 5 1 4896 4980 675437465 675437383 3.650000e-22 117.0
9 TraesCS2D01G456500 chr2B 89.535 86 9 0 4896 4981 675402451 675402366 6.110000e-20 110.0
10 TraesCS2D01G456500 chr2B 98.276 58 1 0 4689 4746 675437683 675437626 1.020000e-17 102.0
11 TraesCS2D01G456500 chr2B 88.095 84 8 2 4974 5056 675216275 675216357 1.320000e-16 99.0
12 TraesCS2D01G456500 chr2A 92.230 3964 225 44 490 4409 704789817 704785893 0.000000e+00 5537.0
13 TraesCS2D01G456500 chr2A 87.883 652 49 13 4418 5059 704785832 704785201 0.000000e+00 739.0
14 TraesCS2D01G456500 chr2A 88.462 156 18 0 1424 1579 465551265 465551110 7.620000e-44 189.0
15 TraesCS2D01G456500 chr2A 92.174 115 6 2 1 114 693038586 693038698 5.980000e-35 159.0
16 TraesCS2D01G456500 chr5A 91.195 159 13 1 1422 1579 53360971 53360813 1.260000e-51 215.0
17 TraesCS2D01G456500 chr3B 80.645 217 36 6 5119 5332 572804610 572804823 4.620000e-36 163.0
18 TraesCS2D01G456500 chr5D 81.675 191 32 3 5152 5340 498482828 498482639 7.730000e-34 156.0
19 TraesCS2D01G456500 chr5D 79.500 200 33 8 5135 5332 58228108 58227915 1.010000e-27 135.0
20 TraesCS2D01G456500 chr4D 80.583 206 33 7 5130 5333 379253316 379253116 1.000000e-32 152.0
21 TraesCS2D01G456500 chr1B 80.513 195 34 4 5152 5344 667912412 667912220 4.650000e-31 147.0
22 TraesCS2D01G456500 chr4A 80.645 186 29 7 5152 5333 440933288 440933470 2.800000e-28 137.0
23 TraesCS2D01G456500 chr1A 79.787 188 35 3 5152 5337 518604590 518604404 3.620000e-27 134.0
24 TraesCS2D01G456500 chr1A 78.641 206 36 8 5130 5333 299987736 299987537 4.690000e-26 130.0
25 TraesCS2D01G456500 chr7D 79.891 184 34 3 5152 5333 191547309 191547127 1.300000e-26 132.0
26 TraesCS2D01G456500 chr5B 96.923 65 1 1 5610 5674 434940593 434940530 2.200000e-19 108.0
27 TraesCS2D01G456500 chr3D 100.000 44 0 0 432 475 120134755 120134712 1.330000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G456500 chr2D 564125792 564131554 5762 True 3215 9129 100.000000 1 5763 3 chr2D.!!$R2 5762
1 TraesCS2D01G456500 chr2B 675451583 675460803 9220 True 2599 5600 89.325667 477 5059 3 chr2B.!!$R3 4582
2 TraesCS2D01G456500 chr2A 704785201 704789817 4616 True 3138 5537 90.056500 490 5059 2 chr2A.!!$R2 4569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.103208 CAGGCGCTCGAGGACTAAAT 59.897 55.000 15.58 0.00 0.00 1.40 F
87 88 0.108329 TCTTCTAAAAGGCTCCGCGG 60.108 55.000 22.12 22.12 33.03 6.46 F
107 108 0.455410 CTCCTCGTCTTGCCTCTGAG 59.545 60.000 0.00 0.00 0.00 3.35 F
645 647 0.462581 CTTGGCGCCATCTGAGCTAA 60.463 55.000 33.25 11.16 0.00 3.09 F
729 731 1.207329 ACCGTTGATAGGGTCAAGCTC 59.793 52.381 0.00 0.00 46.99 4.09 F
2622 2652 0.322975 AGATCAGTGGCAGTGTCACC 59.677 55.000 23.88 8.91 39.18 4.02 F
3931 3973 0.458889 GGTACAGCGTGCAATACCGA 60.459 55.000 8.30 0.00 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1073 1081 3.383761 CTGCTTGCGGTTTTTCTTGAAT 58.616 40.909 0.00 0.00 0.00 2.57 R
2114 2122 2.063979 CATGGCAGGACTCGGGGTA 61.064 63.158 0.00 0.00 0.00 3.69 R
2172 2180 3.013932 AGCCCTGCCTTCCTCCAG 61.014 66.667 0.00 0.00 0.00 3.86 R
2429 2453 1.216710 CGTTGACTCCTCTGCTCCC 59.783 63.158 0.00 0.00 0.00 4.30 R
2751 2781 1.278172 CTCTGTCGAACCAGTGCACG 61.278 60.000 12.01 6.45 34.02 5.34 R
4411 4506 0.109919 TCCGACGTCGTGTCTCAATG 60.110 55.000 33.49 16.62 45.87 2.82 R
5019 5139 0.035439 AACCCTAATCCACCGCACAG 60.035 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.518998 GCAGGCGCTCGAGGACTA 61.519 66.667 15.58 0.00 34.30 2.59
19 20 3.064987 GCAGGCGCTCGAGGACTAA 62.065 63.158 15.58 0.00 34.30 2.24
20 21 1.511305 CAGGCGCTCGAGGACTAAA 59.489 57.895 15.58 0.00 0.00 1.85
21 22 0.103208 CAGGCGCTCGAGGACTAAAT 59.897 55.000 15.58 0.00 0.00 1.40
22 23 0.386113 AGGCGCTCGAGGACTAAATC 59.614 55.000 15.58 0.00 0.00 2.17
23 24 0.386113 GGCGCTCGAGGACTAAATCT 59.614 55.000 15.58 0.00 0.00 2.40
24 25 1.202428 GGCGCTCGAGGACTAAATCTT 60.202 52.381 15.58 0.00 0.00 2.40
25 26 2.121009 GCGCTCGAGGACTAAATCTTC 58.879 52.381 15.58 0.00 0.00 2.87
26 27 2.223618 GCGCTCGAGGACTAAATCTTCT 60.224 50.000 15.58 0.00 31.17 2.85
27 28 3.367607 CGCTCGAGGACTAAATCTTCTG 58.632 50.000 15.58 0.00 31.17 3.02
28 29 3.120041 GCTCGAGGACTAAATCTTCTGC 58.880 50.000 15.58 0.00 31.17 4.26
29 30 3.181480 GCTCGAGGACTAAATCTTCTGCT 60.181 47.826 15.58 0.00 31.17 4.24
30 31 4.036971 GCTCGAGGACTAAATCTTCTGCTA 59.963 45.833 15.58 0.00 31.17 3.49
31 32 5.757886 CTCGAGGACTAAATCTTCTGCTAG 58.242 45.833 3.91 0.00 31.17 3.42
32 33 4.036971 TCGAGGACTAAATCTTCTGCTAGC 59.963 45.833 8.10 8.10 31.17 3.42
33 34 4.202060 CGAGGACTAAATCTTCTGCTAGCA 60.202 45.833 18.22 18.22 31.17 3.49
34 35 5.508825 CGAGGACTAAATCTTCTGCTAGCAT 60.509 44.000 19.72 3.66 31.17 3.79
35 36 6.294231 CGAGGACTAAATCTTCTGCTAGCATA 60.294 42.308 19.72 8.56 31.17 3.14
36 37 6.991938 AGGACTAAATCTTCTGCTAGCATAG 58.008 40.000 19.72 17.96 43.09 2.23
37 38 6.014669 AGGACTAAATCTTCTGCTAGCATAGG 60.015 42.308 19.72 12.06 39.70 2.57
38 39 6.107901 ACTAAATCTTCTGCTAGCATAGGG 57.892 41.667 19.72 6.62 39.70 3.53
39 40 5.841237 ACTAAATCTTCTGCTAGCATAGGGA 59.159 40.000 19.72 14.05 39.70 4.20
40 41 5.839517 AAATCTTCTGCTAGCATAGGGAT 57.160 39.130 19.72 15.59 39.70 3.85
41 42 4.822685 ATCTTCTGCTAGCATAGGGATG 57.177 45.455 19.72 13.60 39.70 3.51
42 43 3.581101 TCTTCTGCTAGCATAGGGATGT 58.419 45.455 19.72 0.00 39.70 3.06
43 44 4.740902 TCTTCTGCTAGCATAGGGATGTA 58.259 43.478 19.72 0.00 39.70 2.29
44 45 5.336945 TCTTCTGCTAGCATAGGGATGTAT 58.663 41.667 19.72 0.00 39.70 2.29
45 46 5.782331 TCTTCTGCTAGCATAGGGATGTATT 59.218 40.000 19.72 0.00 39.70 1.89
46 47 6.270927 TCTTCTGCTAGCATAGGGATGTATTT 59.729 38.462 19.72 0.00 39.70 1.40
47 48 5.798132 TCTGCTAGCATAGGGATGTATTTG 58.202 41.667 19.72 0.87 39.70 2.32
48 49 5.307976 TCTGCTAGCATAGGGATGTATTTGT 59.692 40.000 19.72 0.00 39.70 2.83
49 50 6.496911 TCTGCTAGCATAGGGATGTATTTGTA 59.503 38.462 19.72 0.00 39.70 2.41
50 51 6.464222 TGCTAGCATAGGGATGTATTTGTAC 58.536 40.000 14.93 0.00 39.70 2.90
51 52 6.270000 TGCTAGCATAGGGATGTATTTGTACT 59.730 38.462 14.93 0.00 39.70 2.73
52 53 7.162082 GCTAGCATAGGGATGTATTTGTACTT 58.838 38.462 10.63 0.00 39.70 2.24
53 54 7.118390 GCTAGCATAGGGATGTATTTGTACTTG 59.882 40.741 10.63 0.00 39.70 3.16
54 55 6.299141 AGCATAGGGATGTATTTGTACTTGG 58.701 40.000 0.00 0.00 35.30 3.61
55 56 5.473504 GCATAGGGATGTATTTGTACTTGGG 59.526 44.000 0.00 0.00 35.30 4.12
56 57 3.898482 AGGGATGTATTTGTACTTGGGC 58.102 45.455 0.00 0.00 0.00 5.36
57 58 3.527665 AGGGATGTATTTGTACTTGGGCT 59.472 43.478 0.00 0.00 0.00 5.19
58 59 3.632145 GGGATGTATTTGTACTTGGGCTG 59.368 47.826 0.00 0.00 0.00 4.85
59 60 4.523083 GGATGTATTTGTACTTGGGCTGA 58.477 43.478 0.00 0.00 0.00 4.26
60 61 4.576463 GGATGTATTTGTACTTGGGCTGAG 59.424 45.833 0.00 0.00 0.00 3.35
61 62 3.343617 TGTATTTGTACTTGGGCTGAGC 58.656 45.455 0.00 0.00 0.00 4.26
62 63 2.584835 ATTTGTACTTGGGCTGAGCA 57.415 45.000 6.82 0.00 0.00 4.26
63 64 2.584835 TTTGTACTTGGGCTGAGCAT 57.415 45.000 6.82 0.00 0.00 3.79
64 65 2.113860 TTGTACTTGGGCTGAGCATC 57.886 50.000 6.82 0.00 0.00 3.91
65 66 0.253044 TGTACTTGGGCTGAGCATCC 59.747 55.000 6.82 0.00 0.00 3.51
66 67 0.464554 GTACTTGGGCTGAGCATCCC 60.465 60.000 6.82 2.45 42.93 3.85
70 71 3.248764 GGGCTGAGCATCCCATCT 58.751 61.111 6.82 0.00 42.18 2.90
71 72 1.535685 GGGCTGAGCATCCCATCTT 59.464 57.895 6.82 0.00 42.18 2.40
72 73 0.536915 GGGCTGAGCATCCCATCTTC 60.537 60.000 6.82 0.00 42.18 2.87
73 74 0.473326 GGCTGAGCATCCCATCTTCT 59.527 55.000 6.82 0.00 0.00 2.85
74 75 1.696336 GGCTGAGCATCCCATCTTCTA 59.304 52.381 6.82 0.00 0.00 2.10
75 76 2.105477 GGCTGAGCATCCCATCTTCTAA 59.895 50.000 6.82 0.00 0.00 2.10
76 77 3.434167 GGCTGAGCATCCCATCTTCTAAA 60.434 47.826 6.82 0.00 0.00 1.85
77 78 4.202441 GCTGAGCATCCCATCTTCTAAAA 58.798 43.478 0.00 0.00 0.00 1.52
78 79 4.275443 GCTGAGCATCCCATCTTCTAAAAG 59.725 45.833 0.00 0.00 0.00 2.27
79 80 4.785301 TGAGCATCCCATCTTCTAAAAGG 58.215 43.478 0.00 0.00 33.03 3.11
80 81 3.560105 AGCATCCCATCTTCTAAAAGGC 58.440 45.455 0.00 0.00 33.03 4.35
81 82 3.203934 AGCATCCCATCTTCTAAAAGGCT 59.796 43.478 0.00 0.00 33.03 4.58
82 83 3.567585 GCATCCCATCTTCTAAAAGGCTC 59.432 47.826 0.00 0.00 33.03 4.70
83 84 3.933861 TCCCATCTTCTAAAAGGCTCC 57.066 47.619 0.00 0.00 33.03 4.70
84 85 2.170607 TCCCATCTTCTAAAAGGCTCCG 59.829 50.000 0.00 0.00 33.03 4.63
85 86 1.943340 CCATCTTCTAAAAGGCTCCGC 59.057 52.381 0.00 0.00 33.03 5.54
86 87 1.594862 CATCTTCTAAAAGGCTCCGCG 59.405 52.381 0.00 0.00 33.03 6.46
87 88 0.108329 TCTTCTAAAAGGCTCCGCGG 60.108 55.000 22.12 22.12 33.03 6.46
88 89 1.706287 CTTCTAAAAGGCTCCGCGGC 61.706 60.000 23.51 10.02 38.75 6.53
102 103 3.764466 CGGCTCCTCGTCTTGCCT 61.764 66.667 0.00 0.00 42.90 4.75
103 104 2.185608 GGCTCCTCGTCTTGCCTC 59.814 66.667 0.00 0.00 41.92 4.70
104 105 2.355193 GGCTCCTCGTCTTGCCTCT 61.355 63.158 0.00 0.00 41.92 3.69
105 106 1.153667 GCTCCTCGTCTTGCCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
106 107 1.599606 GCTCCTCGTCTTGCCTCTGA 61.600 60.000 0.00 0.00 0.00 3.27
107 108 0.455410 CTCCTCGTCTTGCCTCTGAG 59.545 60.000 0.00 0.00 0.00 3.35
108 109 1.153667 CCTCGTCTTGCCTCTGAGC 60.154 63.158 0.00 0.00 0.00 4.26
109 110 1.588597 CTCGTCTTGCCTCTGAGCA 59.411 57.895 0.00 0.00 42.17 4.26
110 111 0.735632 CTCGTCTTGCCTCTGAGCAC 60.736 60.000 0.00 0.00 43.97 4.40
111 112 1.005748 CGTCTTGCCTCTGAGCACA 60.006 57.895 0.00 0.00 43.97 4.57
112 113 0.601046 CGTCTTGCCTCTGAGCACAA 60.601 55.000 0.00 5.29 43.97 3.33
113 114 1.155042 GTCTTGCCTCTGAGCACAAG 58.845 55.000 22.58 22.58 43.97 3.16
450 451 9.453572 TTCCTACCTATCAATGAAATGATATGC 57.546 33.333 0.00 0.00 40.51 3.14
451 452 8.605065 TCCTACCTATCAATGAAATGATATGCA 58.395 33.333 0.00 0.00 40.51 3.96
452 453 8.671921 CCTACCTATCAATGAAATGATATGCAC 58.328 37.037 0.00 0.00 40.51 4.57
453 454 9.445878 CTACCTATCAATGAAATGATATGCACT 57.554 33.333 0.00 0.00 40.51 4.40
454 455 8.332996 ACCTATCAATGAAATGATATGCACTC 57.667 34.615 0.00 0.00 40.51 3.51
455 456 8.162085 ACCTATCAATGAAATGATATGCACTCT 58.838 33.333 0.00 0.00 40.51 3.24
456 457 9.011095 CCTATCAATGAAATGATATGCACTCTT 57.989 33.333 0.00 0.00 40.51 2.85
457 458 9.827411 CTATCAATGAAATGATATGCACTCTTG 57.173 33.333 0.00 0.00 40.51 3.02
458 459 7.145985 ATCAATGAAATGATATGCACTCTTGC 58.854 34.615 0.00 0.00 42.58 4.01
459 460 7.995611 ATCAATGAAATGATATGCACTCTTGCG 60.996 37.037 0.00 0.00 43.92 4.85
544 545 1.328986 GAAGCTCATCGGTTGCTTAGC 59.671 52.381 5.75 0.00 45.56 3.09
578 579 4.498241 GAGTGACACTCATGTGATAGCAA 58.502 43.478 27.15 0.00 46.55 3.91
644 646 1.144716 CTTGGCGCCATCTGAGCTA 59.855 57.895 33.25 12.02 0.00 3.32
645 647 0.462581 CTTGGCGCCATCTGAGCTAA 60.463 55.000 33.25 11.16 0.00 3.09
706 708 3.830178 TCAATCAGACCTCGTCTTGGTTA 59.170 43.478 0.00 0.00 41.37 2.85
727 729 1.737793 CAACCGTTGATAGGGTCAAGC 59.262 52.381 5.23 0.00 46.99 4.01
729 731 1.207329 ACCGTTGATAGGGTCAAGCTC 59.793 52.381 0.00 0.00 46.99 4.09
1073 1081 2.491621 CTGCTCAGCGTCGATGGA 59.508 61.111 11.07 0.00 0.00 3.41
1188 1196 3.756727 GGTCCCAGTCCGACGTCC 61.757 72.222 10.58 0.00 0.00 4.79
1189 1197 2.987547 GTCCCAGTCCGACGTCCA 60.988 66.667 10.58 0.00 0.00 4.02
1190 1198 2.675423 TCCCAGTCCGACGTCCAG 60.675 66.667 10.58 1.48 0.00 3.86
1191 1199 4.436998 CCCAGTCCGACGTCCAGC 62.437 72.222 10.58 0.00 0.00 4.85
1192 1200 3.680786 CCAGTCCGACGTCCAGCA 61.681 66.667 10.58 0.00 0.00 4.41
1721 1729 2.753043 GACCACTCCTCCGCCGTA 60.753 66.667 0.00 0.00 0.00 4.02
1800 1808 2.061220 CTGTGGGACAGGCTCTTCA 58.939 57.895 0.00 0.00 42.35 3.02
1836 1844 4.695993 TCAAGGCATGGCGCGACA 62.696 61.111 21.39 21.39 43.84 4.35
2114 2122 4.112341 GTCGCGTACAGCTCCGGT 62.112 66.667 5.77 0.00 45.59 5.28
2185 2196 2.045536 GGTGCTGGAGGAAGGCAG 60.046 66.667 0.00 0.00 36.62 4.85
2189 2200 3.013932 CTGGAGGAAGGCAGGGCT 61.014 66.667 0.00 0.00 0.00 5.19
2261 2272 2.527624 AGGAGCTGCAGTCCCACA 60.528 61.111 23.51 0.00 34.21 4.17
2429 2453 0.391130 TCGAAGATGAACGGGGCAAG 60.391 55.000 0.00 0.00 0.00 4.01
2524 2551 2.223525 GGTACGAATCCTTCTCACTCCG 60.224 54.545 0.00 0.00 0.00 4.63
2618 2648 0.612229 CTCCAGATCAGTGGCAGTGT 59.388 55.000 21.06 9.37 37.53 3.55
2622 2652 0.322975 AGATCAGTGGCAGTGTCACC 59.677 55.000 23.88 8.91 39.18 4.02
2829 2859 2.989824 CTGTCGGTCCCGGACACT 60.990 66.667 19.43 0.00 40.25 3.55
2882 2912 3.706373 GGAGGAGCACTGCCGGAA 61.706 66.667 5.05 0.00 0.00 4.30
2950 2980 3.371063 TCGTCGACAGGGTGCTCC 61.371 66.667 17.16 0.00 0.00 4.70
2952 2982 2.982130 GTCGACAGGGTGCTCCAT 59.018 61.111 11.55 0.00 38.24 3.41
2953 2983 1.296715 GTCGACAGGGTGCTCCATT 59.703 57.895 11.55 0.00 38.24 3.16
3097 3127 1.969589 CACCTGCTGCTGTGCATCA 60.970 57.895 0.00 0.00 42.48 3.07
3109 3139 4.115199 GCATCAGGGCGGAGGGTT 62.115 66.667 0.00 0.00 0.00 4.11
3110 3140 2.190578 CATCAGGGCGGAGGGTTC 59.809 66.667 0.00 0.00 0.00 3.62
3111 3141 2.285368 ATCAGGGCGGAGGGTTCA 60.285 61.111 0.00 0.00 0.00 3.18
3112 3142 1.694169 ATCAGGGCGGAGGGTTCAT 60.694 57.895 0.00 0.00 0.00 2.57
3113 3143 1.987807 ATCAGGGCGGAGGGTTCATG 61.988 60.000 0.00 0.00 0.00 3.07
3117 3147 2.268920 GCGGAGGGTTCATGCAGA 59.731 61.111 0.00 0.00 0.00 4.26
3119 3149 0.960364 GCGGAGGGTTCATGCAGAAA 60.960 55.000 0.00 0.00 38.13 2.52
3153 3183 0.460987 GGGTTCATGGAGAGAGCGTG 60.461 60.000 0.00 0.00 0.00 5.34
3156 3186 0.532573 TTCATGGAGAGAGCGTGGTC 59.467 55.000 0.00 0.00 0.00 4.02
3237 3267 1.323271 TGCTCCGGCTGAGAAGGTAG 61.323 60.000 10.34 0.00 44.42 3.18
3238 3268 1.038130 GCTCCGGCTGAGAAGGTAGA 61.038 60.000 10.34 0.00 44.42 2.59
3241 3271 2.432510 CTCCGGCTGAGAAGGTAGAATT 59.567 50.000 0.00 0.00 44.42 2.17
3242 3272 2.431057 TCCGGCTGAGAAGGTAGAATTC 59.569 50.000 0.00 0.00 0.00 2.17
3243 3273 2.168521 CCGGCTGAGAAGGTAGAATTCA 59.831 50.000 8.44 0.00 0.00 2.57
3251 3283 7.066766 GCTGAGAAGGTAGAATTCATTTGTGAT 59.933 37.037 8.44 0.00 0.00 3.06
3285 3317 8.638685 AAATACATACGTACATGGTTCTGTAC 57.361 34.615 0.00 4.65 45.18 2.90
3286 3318 5.909621 ACATACGTACATGGTTCTGTACT 57.090 39.130 0.00 3.44 46.02 2.73
3288 3320 6.097356 ACATACGTACATGGTTCTGTACTTG 58.903 40.000 0.00 8.90 46.02 3.16
3291 3323 4.280174 ACGTACATGGTTCTGTACTTGTCT 59.720 41.667 11.35 0.00 46.02 3.41
3292 3324 4.621460 CGTACATGGTTCTGTACTTGTCTG 59.379 45.833 11.35 0.00 46.02 3.51
3293 3325 4.689612 ACATGGTTCTGTACTTGTCTGT 57.310 40.909 0.00 0.00 0.00 3.41
3294 3326 4.380531 ACATGGTTCTGTACTTGTCTGTG 58.619 43.478 0.00 0.00 0.00 3.66
3295 3327 4.141711 ACATGGTTCTGTACTTGTCTGTGT 60.142 41.667 0.00 0.00 0.00 3.72
3307 3339 5.883661 ACTTGTCTGTGTTTTTGTCTGATG 58.116 37.500 0.00 0.00 0.00 3.07
3308 3340 5.647658 ACTTGTCTGTGTTTTTGTCTGATGA 59.352 36.000 0.00 0.00 0.00 2.92
3309 3341 6.150976 ACTTGTCTGTGTTTTTGTCTGATGAA 59.849 34.615 0.00 0.00 0.00 2.57
3310 3342 6.698008 TGTCTGTGTTTTTGTCTGATGAAT 57.302 33.333 0.00 0.00 0.00 2.57
3319 3351 3.811722 TGTCTGATGAATGAAACGTGC 57.188 42.857 0.00 0.00 0.00 5.34
3323 3355 5.107104 TGTCTGATGAATGAAACGTGCTAAC 60.107 40.000 0.00 0.00 0.00 2.34
3325 3357 5.120674 TCTGATGAATGAAACGTGCTAACTG 59.879 40.000 0.00 0.00 0.00 3.16
3332 3367 0.944311 AACGTGCTAACTGTCGCAGG 60.944 55.000 17.44 17.44 44.82 4.85
3337 3372 1.517832 CTAACTGTCGCAGGAGGGG 59.482 63.158 10.80 0.00 35.51 4.79
3348 3383 0.704076 CAGGAGGGGAATGGTGGAAA 59.296 55.000 0.00 0.00 0.00 3.13
3359 3394 4.398044 GGAATGGTGGAAATGTTCATACGT 59.602 41.667 0.00 0.00 0.00 3.57
3376 3411 2.593148 TGGATTGTGCACGGCGTT 60.593 55.556 11.19 0.00 0.00 4.84
3493 3528 2.071540 CACACTGTCACTGGTATGCTG 58.928 52.381 0.00 0.00 0.00 4.41
3536 3572 2.097954 TGCTGCACACTTTTCTTGTCAG 59.902 45.455 0.00 0.00 0.00 3.51
3546 3583 2.971660 TTCTTGTCAGTGTCGTGGAA 57.028 45.000 0.00 0.00 0.00 3.53
3557 3594 3.192844 AGTGTCGTGGAACAACGAGATAT 59.807 43.478 4.61 0.00 44.16 1.63
3558 3595 4.397103 AGTGTCGTGGAACAACGAGATATA 59.603 41.667 4.61 0.00 44.16 0.86
3601 3643 5.570589 GCATGTTTTCATTCTGCTCAAGTAC 59.429 40.000 0.00 0.00 38.64 2.73
3616 3658 5.808030 GCTCAAGTACTCAAGAAGTATGACC 59.192 44.000 0.00 0.00 42.38 4.02
3626 3668 8.784043 ACTCAAGAAGTATGACCAAAAACATAC 58.216 33.333 0.00 0.00 45.00 2.39
3711 3753 2.359214 CAGCGTATACAGAGAAGAGGCA 59.641 50.000 3.32 0.00 0.00 4.75
3713 3755 2.359531 GCGTATACAGAGAAGAGGCAGT 59.640 50.000 3.32 0.00 0.00 4.40
3877 3919 3.598715 TCGCCGACGACACACCTT 61.599 61.111 0.00 0.00 45.12 3.50
3880 3922 3.048602 CCGACGACACACCTTCCT 58.951 61.111 0.00 0.00 0.00 3.36
3900 3942 1.663702 CACACCCGTCACTTCCGAC 60.664 63.158 0.00 0.00 0.00 4.79
3921 3963 0.880278 CAACAGTGCAGGTACAGCGT 60.880 55.000 0.00 0.00 46.64 5.07
3922 3964 0.880278 AACAGTGCAGGTACAGCGTG 60.880 55.000 0.00 3.02 46.64 5.34
3929 3971 1.006832 CAGGTACAGCGTGCAATACC 58.993 55.000 13.71 13.71 37.88 2.73
3930 3972 0.459585 AGGTACAGCGTGCAATACCG 60.460 55.000 14.96 0.00 41.71 4.02
3931 3973 0.458889 GGTACAGCGTGCAATACCGA 60.459 55.000 8.30 0.00 0.00 4.69
3933 3975 0.799152 TACAGCGTGCAATACCGACG 60.799 55.000 0.00 0.00 36.18 5.12
3936 3978 3.394588 CGTGCAATACCGACGCAT 58.605 55.556 0.00 0.00 38.07 4.73
3938 3980 1.351707 GTGCAATACCGACGCATGG 59.648 57.895 0.00 0.00 38.07 3.66
3939 3981 1.078778 TGCAATACCGACGCATGGT 60.079 52.632 0.00 0.00 43.62 3.55
3955 4001 3.853307 GCATGGTTTCAACGGTTTCTGAG 60.853 47.826 0.00 0.00 0.00 3.35
3956 4002 2.993937 TGGTTTCAACGGTTTCTGAGT 58.006 42.857 0.00 0.00 0.00 3.41
3962 4008 3.454375 TCAACGGTTTCTGAGTTCTGAC 58.546 45.455 0.00 0.00 0.00 3.51
3963 4009 3.132289 TCAACGGTTTCTGAGTTCTGACT 59.868 43.478 0.00 0.00 39.32 3.41
3964 4010 4.340097 TCAACGGTTTCTGAGTTCTGACTA 59.660 41.667 0.00 0.00 35.88 2.59
3987 4038 0.464036 TCAACGCACTGGTGTTCTCT 59.536 50.000 2.64 0.00 45.51 3.10
3997 4052 1.202758 TGGTGTTCTCTTTGCCGTGAT 60.203 47.619 0.00 0.00 0.00 3.06
3998 4053 1.880027 GGTGTTCTCTTTGCCGTGATT 59.120 47.619 0.00 0.00 0.00 2.57
4365 4426 2.706555 TATCACTTATCAGCGCCTCG 57.293 50.000 2.29 0.00 0.00 4.63
4370 4431 1.069159 ACTTATCAGCGCCTCGTATCG 60.069 52.381 2.29 0.00 0.00 2.92
4390 4485 1.352404 CCACGAAAACCGCACGAAA 59.648 52.632 0.00 0.00 43.32 3.46
4411 4506 9.722056 ACGAAACTATCAAATCATTAAGCATTC 57.278 29.630 0.00 0.00 0.00 2.67
4427 4540 2.222596 GCATTCATTGAGACACGACGTC 60.223 50.000 5.18 5.18 45.77 4.34
4439 4552 0.952497 ACGACGTCGGAGCTGAACTA 60.952 55.000 37.89 0.00 44.95 2.24
4453 4566 3.929610 GCTGAACTACTCCATTGACTGAC 59.070 47.826 0.00 0.00 0.00 3.51
4454 4567 4.169508 CTGAACTACTCCATTGACTGACG 58.830 47.826 0.00 0.00 0.00 4.35
4455 4568 3.056821 TGAACTACTCCATTGACTGACGG 60.057 47.826 0.00 0.00 0.00 4.79
4456 4569 2.803956 ACTACTCCATTGACTGACGGA 58.196 47.619 0.00 0.00 0.00 4.69
4758 4871 4.797471 TGCTGGAAATGAAATTGTTCTCG 58.203 39.130 0.00 0.00 36.10 4.04
4807 4920 2.461945 GCGACGAGGGCTTAAAGGC 61.462 63.158 0.00 0.00 40.51 4.35
4822 4935 5.163713 GCTTAAAGGCTAAGATCCAACTGTG 60.164 44.000 1.18 0.00 0.00 3.66
4838 4951 3.544684 ACTGTGCAGTGTGATTTCTTGA 58.455 40.909 3.80 0.00 40.75 3.02
4839 4952 3.947196 ACTGTGCAGTGTGATTTCTTGAA 59.053 39.130 3.80 0.00 40.75 2.69
4840 4953 4.036027 ACTGTGCAGTGTGATTTCTTGAAG 59.964 41.667 3.80 0.00 40.75 3.02
4843 4956 3.633525 TGCAGTGTGATTTCTTGAAGCTT 59.366 39.130 0.00 0.00 0.00 3.74
4844 4957 3.979495 GCAGTGTGATTTCTTGAAGCTTG 59.021 43.478 2.10 0.00 0.00 4.01
4845 4958 4.498682 GCAGTGTGATTTCTTGAAGCTTGT 60.499 41.667 2.10 0.00 0.00 3.16
4846 4959 5.277974 GCAGTGTGATTTCTTGAAGCTTGTA 60.278 40.000 2.10 0.00 0.00 2.41
4848 4961 5.822519 AGTGTGATTTCTTGAAGCTTGTACA 59.177 36.000 2.10 0.00 0.00 2.90
4849 4962 6.017605 AGTGTGATTTCTTGAAGCTTGTACAG 60.018 38.462 2.10 0.00 0.00 2.74
4850 4963 6.017934 GTGTGATTTCTTGAAGCTTGTACAGA 60.018 38.462 2.10 0.00 0.00 3.41
4851 4964 6.542005 TGTGATTTCTTGAAGCTTGTACAGAA 59.458 34.615 2.10 2.90 0.00 3.02
4852 4965 6.853362 GTGATTTCTTGAAGCTTGTACAGAAC 59.147 38.462 2.10 0.00 0.00 3.01
4855 4968 5.023533 TCTTGAAGCTTGTACAGAACACT 57.976 39.130 2.10 0.00 38.00 3.55
4856 4969 4.811024 TCTTGAAGCTTGTACAGAACACTG 59.189 41.667 2.10 0.00 38.00 3.66
4858 4971 4.371786 TGAAGCTTGTACAGAACACTGAG 58.628 43.478 2.10 0.00 38.00 3.35
4861 4974 5.730296 AGCTTGTACAGAACACTGAGTAT 57.270 39.130 0.00 0.00 38.00 2.12
4947 5067 2.030823 GCAAGTTGCTTGTGCTTTTTCC 59.969 45.455 20.71 0.00 42.77 3.13
5047 5168 2.496070 GTGGATTAGGGTTGGCCTTTTC 59.504 50.000 3.32 0.00 34.45 2.29
5059 5180 1.646189 GCCTTTTCTGGAGCTACGAG 58.354 55.000 0.00 0.00 0.00 4.18
5061 5182 1.134670 CCTTTTCTGGAGCTACGAGGG 60.135 57.143 0.00 0.00 0.00 4.30
5062 5183 0.249398 TTTTCTGGAGCTACGAGGGC 59.751 55.000 0.00 0.00 0.00 5.19
5063 5184 0.902984 TTTCTGGAGCTACGAGGGCA 60.903 55.000 0.00 0.00 0.00 5.36
5064 5185 0.687757 TTCTGGAGCTACGAGGGCAT 60.688 55.000 0.00 0.00 0.00 4.40
5065 5186 1.068753 CTGGAGCTACGAGGGCATG 59.931 63.158 0.00 0.00 0.00 4.06
5066 5187 1.680522 CTGGAGCTACGAGGGCATGT 61.681 60.000 0.00 0.00 0.00 3.21
5067 5188 0.396556 TGGAGCTACGAGGGCATGTA 60.397 55.000 0.00 0.00 0.00 2.29
5068 5189 0.032267 GGAGCTACGAGGGCATGTAC 59.968 60.000 0.00 0.00 0.00 2.90
5069 5190 0.744874 GAGCTACGAGGGCATGTACA 59.255 55.000 0.00 0.00 0.00 2.90
5070 5191 1.136305 GAGCTACGAGGGCATGTACAA 59.864 52.381 0.00 0.00 0.00 2.41
5071 5192 1.762957 AGCTACGAGGGCATGTACAAT 59.237 47.619 0.00 0.00 0.00 2.71
5072 5193 1.867233 GCTACGAGGGCATGTACAATG 59.133 52.381 0.00 0.12 0.00 2.82
5073 5194 2.483876 CTACGAGGGCATGTACAATGG 58.516 52.381 0.00 0.00 0.00 3.16
5074 5195 0.618458 ACGAGGGCATGTACAATGGT 59.382 50.000 0.00 0.00 0.00 3.55
5075 5196 1.016627 CGAGGGCATGTACAATGGTG 58.983 55.000 0.00 0.00 0.00 4.17
5076 5197 1.392589 GAGGGCATGTACAATGGTGG 58.607 55.000 0.00 0.00 0.00 4.61
5077 5198 0.704076 AGGGCATGTACAATGGTGGT 59.296 50.000 0.00 0.00 0.00 4.16
5078 5199 1.919654 AGGGCATGTACAATGGTGGTA 59.080 47.619 0.00 0.00 0.00 3.25
5079 5200 2.513738 AGGGCATGTACAATGGTGGTAT 59.486 45.455 0.00 0.00 0.00 2.73
5080 5201 3.719479 AGGGCATGTACAATGGTGGTATA 59.281 43.478 0.00 0.00 0.00 1.47
5081 5202 4.353788 AGGGCATGTACAATGGTGGTATAT 59.646 41.667 0.00 0.00 0.00 0.86
5082 5203 5.550011 AGGGCATGTACAATGGTGGTATATA 59.450 40.000 0.00 0.00 0.00 0.86
5083 5204 5.880332 GGGCATGTACAATGGTGGTATATAG 59.120 44.000 0.00 0.00 0.00 1.31
5084 5205 6.296202 GGGCATGTACAATGGTGGTATATAGA 60.296 42.308 0.00 0.00 0.00 1.98
5085 5206 6.594159 GGCATGTACAATGGTGGTATATAGAC 59.406 42.308 0.00 0.00 0.00 2.59
5086 5207 7.158697 GCATGTACAATGGTGGTATATAGACA 58.841 38.462 0.00 0.00 0.00 3.41
5087 5208 7.117812 GCATGTACAATGGTGGTATATAGACAC 59.882 40.741 0.00 8.36 0.00 3.67
5088 5209 7.663043 TGTACAATGGTGGTATATAGACACA 57.337 36.000 15.57 0.00 36.87 3.72
5089 5210 8.257602 TGTACAATGGTGGTATATAGACACAT 57.742 34.615 15.57 0.00 36.87 3.21
5090 5211 9.369672 TGTACAATGGTGGTATATAGACACATA 57.630 33.333 15.57 7.53 36.87 2.29
5093 5214 8.880244 ACAATGGTGGTATATAGACACATATGT 58.120 33.333 1.41 1.41 43.71 2.29
5163 5284 5.078411 AGTCTCACACTACACATCCAATC 57.922 43.478 0.00 0.00 31.37 2.67
5164 5285 4.081420 AGTCTCACACTACACATCCAATCC 60.081 45.833 0.00 0.00 31.37 3.01
5165 5286 4.081420 GTCTCACACTACACATCCAATCCT 60.081 45.833 0.00 0.00 0.00 3.24
5166 5287 5.127194 GTCTCACACTACACATCCAATCCTA 59.873 44.000 0.00 0.00 0.00 2.94
5167 5288 5.127194 TCTCACACTACACATCCAATCCTAC 59.873 44.000 0.00 0.00 0.00 3.18
5168 5289 5.023452 TCACACTACACATCCAATCCTACT 58.977 41.667 0.00 0.00 0.00 2.57
5169 5290 5.483937 TCACACTACACATCCAATCCTACTT 59.516 40.000 0.00 0.00 0.00 2.24
5170 5291 6.013725 TCACACTACACATCCAATCCTACTTT 60.014 38.462 0.00 0.00 0.00 2.66
5171 5292 6.655003 CACACTACACATCCAATCCTACTTTT 59.345 38.462 0.00 0.00 0.00 2.27
5172 5293 6.879458 ACACTACACATCCAATCCTACTTTTC 59.121 38.462 0.00 0.00 0.00 2.29
5173 5294 6.878923 CACTACACATCCAATCCTACTTTTCA 59.121 38.462 0.00 0.00 0.00 2.69
5174 5295 6.879458 ACTACACATCCAATCCTACTTTTCAC 59.121 38.462 0.00 0.00 0.00 3.18
5175 5296 5.880901 ACACATCCAATCCTACTTTTCACT 58.119 37.500 0.00 0.00 0.00 3.41
5176 5297 6.306987 ACACATCCAATCCTACTTTTCACTT 58.693 36.000 0.00 0.00 0.00 3.16
5177 5298 6.431234 ACACATCCAATCCTACTTTTCACTTC 59.569 38.462 0.00 0.00 0.00 3.01
5178 5299 6.430925 CACATCCAATCCTACTTTTCACTTCA 59.569 38.462 0.00 0.00 0.00 3.02
5179 5300 7.004086 ACATCCAATCCTACTTTTCACTTCAA 58.996 34.615 0.00 0.00 0.00 2.69
5180 5301 6.877611 TCCAATCCTACTTTTCACTTCAAC 57.122 37.500 0.00 0.00 0.00 3.18
5181 5302 6.601332 TCCAATCCTACTTTTCACTTCAACT 58.399 36.000 0.00 0.00 0.00 3.16
5182 5303 7.060421 TCCAATCCTACTTTTCACTTCAACTT 58.940 34.615 0.00 0.00 0.00 2.66
5183 5304 7.559897 TCCAATCCTACTTTTCACTTCAACTTT 59.440 33.333 0.00 0.00 0.00 2.66
5184 5305 8.197439 CCAATCCTACTTTTCACTTCAACTTTT 58.803 33.333 0.00 0.00 0.00 2.27
5185 5306 9.586435 CAATCCTACTTTTCACTTCAACTTTTT 57.414 29.630 0.00 0.00 0.00 1.94
5186 5307 9.803315 AATCCTACTTTTCACTTCAACTTTTTC 57.197 29.630 0.00 0.00 0.00 2.29
5187 5308 8.343168 TCCTACTTTTCACTTCAACTTTTTCA 57.657 30.769 0.00 0.00 0.00 2.69
5188 5309 8.798402 TCCTACTTTTCACTTCAACTTTTTCAA 58.202 29.630 0.00 0.00 0.00 2.69
5189 5310 8.860128 CCTACTTTTCACTTCAACTTTTTCAAC 58.140 33.333 0.00 0.00 0.00 3.18
5190 5311 9.626045 CTACTTTTCACTTCAACTTTTTCAACT 57.374 29.630 0.00 0.00 0.00 3.16
5191 5312 8.887036 ACTTTTCACTTCAACTTTTTCAACTT 57.113 26.923 0.00 0.00 0.00 2.66
5192 5313 8.978539 ACTTTTCACTTCAACTTTTTCAACTTC 58.021 29.630 0.00 0.00 0.00 3.01
5193 5314 8.879342 TTTTCACTTCAACTTTTTCAACTTCA 57.121 26.923 0.00 0.00 0.00 3.02
5194 5315 9.487790 TTTTCACTTCAACTTTTTCAACTTCAT 57.512 25.926 0.00 0.00 0.00 2.57
5196 5317 9.567848 TTCACTTCAACTTTTTCAACTTCATAC 57.432 29.630 0.00 0.00 0.00 2.39
5197 5318 8.735315 TCACTTCAACTTTTTCAACTTCATACA 58.265 29.630 0.00 0.00 0.00 2.29
5198 5319 9.520204 CACTTCAACTTTTTCAACTTCATACAT 57.480 29.630 0.00 0.00 0.00 2.29
5199 5320 9.736023 ACTTCAACTTTTTCAACTTCATACATC 57.264 29.630 0.00 0.00 0.00 3.06
5200 5321 9.734620 CTTCAACTTTTTCAACTTCATACATCA 57.265 29.630 0.00 0.00 0.00 3.07
5201 5322 9.734620 TTCAACTTTTTCAACTTCATACATCAG 57.265 29.630 0.00 0.00 0.00 2.90
5202 5323 9.119418 TCAACTTTTTCAACTTCATACATCAGA 57.881 29.630 0.00 0.00 0.00 3.27
5203 5324 9.173939 CAACTTTTTCAACTTCATACATCAGAC 57.826 33.333 0.00 0.00 0.00 3.51
5204 5325 7.875971 ACTTTTTCAACTTCATACATCAGACC 58.124 34.615 0.00 0.00 0.00 3.85
5205 5326 6.817765 TTTTCAACTTCATACATCAGACCC 57.182 37.500 0.00 0.00 0.00 4.46
5206 5327 4.487714 TCAACTTCATACATCAGACCCC 57.512 45.455 0.00 0.00 0.00 4.95
5207 5328 3.843619 TCAACTTCATACATCAGACCCCA 59.156 43.478 0.00 0.00 0.00 4.96
5208 5329 3.914426 ACTTCATACATCAGACCCCAC 57.086 47.619 0.00 0.00 0.00 4.61
5209 5330 2.505819 ACTTCATACATCAGACCCCACC 59.494 50.000 0.00 0.00 0.00 4.61
5210 5331 2.568546 TCATACATCAGACCCCACCT 57.431 50.000 0.00 0.00 0.00 4.00
5211 5332 2.845659 TCATACATCAGACCCCACCTT 58.154 47.619 0.00 0.00 0.00 3.50
5212 5333 3.189606 TCATACATCAGACCCCACCTTT 58.810 45.455 0.00 0.00 0.00 3.11
5213 5334 3.591527 TCATACATCAGACCCCACCTTTT 59.408 43.478 0.00 0.00 0.00 2.27
5214 5335 2.586648 ACATCAGACCCCACCTTTTC 57.413 50.000 0.00 0.00 0.00 2.29
5215 5336 2.065799 ACATCAGACCCCACCTTTTCT 58.934 47.619 0.00 0.00 0.00 2.52
5216 5337 2.040412 ACATCAGACCCCACCTTTTCTC 59.960 50.000 0.00 0.00 0.00 2.87
5217 5338 2.118403 TCAGACCCCACCTTTTCTCT 57.882 50.000 0.00 0.00 0.00 3.10
5218 5339 2.418669 TCAGACCCCACCTTTTCTCTT 58.581 47.619 0.00 0.00 0.00 2.85
5219 5340 2.372172 TCAGACCCCACCTTTTCTCTTC 59.628 50.000 0.00 0.00 0.00 2.87
5220 5341 2.106511 CAGACCCCACCTTTTCTCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
5221 5342 2.783510 AGACCCCACCTTTTCTCTTCAA 59.216 45.455 0.00 0.00 0.00 2.69
5222 5343 3.149981 GACCCCACCTTTTCTCTTCAAG 58.850 50.000 0.00 0.00 0.00 3.02
5223 5344 2.514160 ACCCCACCTTTTCTCTTCAAGT 59.486 45.455 0.00 0.00 0.00 3.16
5224 5345 3.720002 ACCCCACCTTTTCTCTTCAAGTA 59.280 43.478 0.00 0.00 0.00 2.24
5225 5346 4.072839 CCCCACCTTTTCTCTTCAAGTAC 58.927 47.826 0.00 0.00 0.00 2.73
5226 5347 4.072839 CCCACCTTTTCTCTTCAAGTACC 58.927 47.826 0.00 0.00 0.00 3.34
5227 5348 4.202472 CCCACCTTTTCTCTTCAAGTACCT 60.202 45.833 0.00 0.00 0.00 3.08
5228 5349 4.757149 CCACCTTTTCTCTTCAAGTACCTG 59.243 45.833 0.00 0.00 0.00 4.00
5229 5350 4.214332 CACCTTTTCTCTTCAAGTACCTGC 59.786 45.833 0.00 0.00 0.00 4.85
5230 5351 4.103311 ACCTTTTCTCTTCAAGTACCTGCT 59.897 41.667 0.00 0.00 0.00 4.24
5231 5352 5.066593 CCTTTTCTCTTCAAGTACCTGCTT 58.933 41.667 0.00 0.00 0.00 3.91
5232 5353 5.180304 CCTTTTCTCTTCAAGTACCTGCTTC 59.820 44.000 0.00 0.00 0.00 3.86
5233 5354 3.963428 TCTCTTCAAGTACCTGCTTCC 57.037 47.619 0.00 0.00 0.00 3.46
5234 5355 3.511477 TCTCTTCAAGTACCTGCTTCCT 58.489 45.455 0.00 0.00 0.00 3.36
5235 5356 3.259374 TCTCTTCAAGTACCTGCTTCCTG 59.741 47.826 0.00 0.00 0.00 3.86
5236 5357 2.079925 CTTCAAGTACCTGCTTCCTGC 58.920 52.381 0.00 0.00 43.25 4.85
5253 5374 2.787994 CTGCATAGGATTCCACATCCC 58.212 52.381 5.29 0.00 38.98 3.85
5254 5375 2.374504 CTGCATAGGATTCCACATCCCT 59.625 50.000 5.29 0.00 38.98 4.20
5255 5376 3.584406 CTGCATAGGATTCCACATCCCTA 59.416 47.826 5.29 0.00 38.98 3.53
5256 5377 4.178339 TGCATAGGATTCCACATCCCTAT 58.822 43.478 5.29 0.00 41.33 2.57
5258 5379 4.521146 CATAGGATTCCACATCCCTATGC 58.479 47.826 12.56 0.00 46.45 3.14
5259 5380 1.349026 AGGATTCCACATCCCTATGCG 59.651 52.381 5.29 0.00 38.98 4.73
5260 5381 1.347707 GGATTCCACATCCCTATGCGA 59.652 52.381 0.00 0.00 36.50 5.10
5261 5382 2.224523 GGATTCCACATCCCTATGCGAA 60.225 50.000 0.00 0.00 36.50 4.70
5262 5383 2.325583 TTCCACATCCCTATGCGAAC 57.674 50.000 0.00 0.00 36.50 3.95
5263 5384 0.104120 TCCACATCCCTATGCGAACG 59.896 55.000 0.00 0.00 36.50 3.95
5264 5385 0.179084 CCACATCCCTATGCGAACGT 60.179 55.000 0.00 0.00 36.50 3.99
5265 5386 1.067974 CCACATCCCTATGCGAACGTA 59.932 52.381 0.00 0.00 36.50 3.57
5266 5387 2.288825 CCACATCCCTATGCGAACGTAT 60.289 50.000 3.26 3.26 36.50 3.06
5267 5388 3.390135 CACATCCCTATGCGAACGTATT 58.610 45.455 3.04 0.00 36.50 1.89
5268 5389 3.807622 CACATCCCTATGCGAACGTATTT 59.192 43.478 3.04 0.00 36.50 1.40
5269 5390 4.272504 CACATCCCTATGCGAACGTATTTT 59.727 41.667 3.04 0.00 36.50 1.82
5270 5391 4.879545 ACATCCCTATGCGAACGTATTTTT 59.120 37.500 3.04 0.00 36.50 1.94
5289 5410 5.414789 TTTTTCTGACATCCGATCCTACA 57.585 39.130 0.00 0.00 0.00 2.74
5290 5411 5.614324 TTTTCTGACATCCGATCCTACAT 57.386 39.130 0.00 0.00 0.00 2.29
5291 5412 4.590850 TTCTGACATCCGATCCTACATG 57.409 45.455 0.00 0.00 0.00 3.21
5292 5413 3.832527 TCTGACATCCGATCCTACATGA 58.167 45.455 0.00 0.00 0.00 3.07
5293 5414 3.570125 TCTGACATCCGATCCTACATGAC 59.430 47.826 0.00 0.00 0.00 3.06
5294 5415 3.295973 TGACATCCGATCCTACATGACA 58.704 45.455 0.00 0.00 0.00 3.58
5295 5416 3.897505 TGACATCCGATCCTACATGACAT 59.102 43.478 0.00 0.00 0.00 3.06
5296 5417 4.240888 GACATCCGATCCTACATGACATG 58.759 47.826 14.02 14.02 0.00 3.21
5297 5418 2.820059 TCCGATCCTACATGACATGC 57.180 50.000 15.49 0.00 0.00 4.06
5298 5419 1.000274 TCCGATCCTACATGACATGCG 60.000 52.381 15.49 9.27 0.00 4.73
5299 5420 1.000274 CCGATCCTACATGACATGCGA 60.000 52.381 15.49 8.86 0.00 5.10
5300 5421 2.323059 CGATCCTACATGACATGCGAG 58.677 52.381 15.49 12.27 0.00 5.03
5301 5422 2.681706 GATCCTACATGACATGCGAGG 58.318 52.381 22.75 22.75 37.80 4.63
5302 5423 0.104855 TCCTACATGACATGCGAGGC 59.895 55.000 23.48 0.00 36.89 4.70
5303 5424 0.179076 CCTACATGACATGCGAGGCA 60.179 55.000 19.09 0.00 44.86 4.75
5323 5444 4.148128 CATCACCTTGAGGCTATGAACT 57.852 45.455 6.42 0.00 39.32 3.01
5324 5445 3.616956 TCACCTTGAGGCTATGAACTG 57.383 47.619 0.00 0.00 39.32 3.16
5325 5446 2.012673 CACCTTGAGGCTATGAACTGC 58.987 52.381 0.00 0.00 39.32 4.40
5332 5453 2.036236 GCTATGAACTGCCATGCCC 58.964 57.895 0.00 0.00 0.00 5.36
5333 5454 0.752743 GCTATGAACTGCCATGCCCA 60.753 55.000 0.00 0.00 0.00 5.36
5334 5455 1.766494 CTATGAACTGCCATGCCCAA 58.234 50.000 0.00 0.00 0.00 4.12
5335 5456 2.101783 CTATGAACTGCCATGCCCAAA 58.898 47.619 0.00 0.00 0.00 3.28
5336 5457 0.609662 ATGAACTGCCATGCCCAAAC 59.390 50.000 0.00 0.00 0.00 2.93
5337 5458 0.469705 TGAACTGCCATGCCCAAACT 60.470 50.000 0.00 0.00 0.00 2.66
5338 5459 0.681175 GAACTGCCATGCCCAAACTT 59.319 50.000 0.00 0.00 0.00 2.66
5339 5460 0.393820 AACTGCCATGCCCAAACTTG 59.606 50.000 0.00 0.00 0.00 3.16
5340 5461 1.375013 CTGCCATGCCCAAACTTGC 60.375 57.895 0.00 0.00 0.00 4.01
5341 5462 2.102109 CTGCCATGCCCAAACTTGCA 62.102 55.000 0.00 0.00 42.52 4.08
5342 5463 1.668793 GCCATGCCCAAACTTGCAC 60.669 57.895 0.00 0.00 40.88 4.57
5345 5466 0.104487 CATGCCCAAACTTGCACACA 59.896 50.000 0.00 0.00 40.88 3.72
5347 5468 1.697284 TGCCCAAACTTGCACACATA 58.303 45.000 0.00 0.00 31.31 2.29
5361 5482 3.365868 GCACACATAGCAAAATTCGGTCA 60.366 43.478 0.00 0.00 0.00 4.02
5363 5484 4.616802 CACACATAGCAAAATTCGGTCAAC 59.383 41.667 0.00 0.00 0.00 3.18
5657 7764 7.555306 TTTTTAGCAATTTACAACCCCAAAC 57.445 32.000 0.00 0.00 0.00 2.93
5659 7766 4.066646 AGCAATTTACAACCCCAAACAC 57.933 40.909 0.00 0.00 0.00 3.32
5660 7767 3.709141 AGCAATTTACAACCCCAAACACT 59.291 39.130 0.00 0.00 0.00 3.55
5662 7769 4.442192 GCAATTTACAACCCCAAACACTCA 60.442 41.667 0.00 0.00 0.00 3.41
5663 7770 5.741673 GCAATTTACAACCCCAAACACTCAT 60.742 40.000 0.00 0.00 0.00 2.90
5664 7771 4.927978 TTTACAACCCCAAACACTCATG 57.072 40.909 0.00 0.00 0.00 3.07
5665 7772 2.452600 ACAACCCCAAACACTCATGT 57.547 45.000 0.00 0.00 42.46 3.21
5677 7784 4.405116 ACACTCATGTTTTTGCATTGGT 57.595 36.364 0.00 0.00 34.46 3.67
5678 7785 4.370917 ACACTCATGTTTTTGCATTGGTC 58.629 39.130 0.00 0.00 34.46 4.02
5679 7786 3.742369 CACTCATGTTTTTGCATTGGTCC 59.258 43.478 0.00 0.00 0.00 4.46
5680 7787 3.244181 ACTCATGTTTTTGCATTGGTCCC 60.244 43.478 0.00 0.00 0.00 4.46
5681 7788 2.038295 TCATGTTTTTGCATTGGTCCCC 59.962 45.455 0.00 0.00 0.00 4.81
5682 7789 1.500474 TGTTTTTGCATTGGTCCCCA 58.500 45.000 0.00 0.00 0.00 4.96
5683 7790 1.415659 TGTTTTTGCATTGGTCCCCAG 59.584 47.619 0.00 0.00 33.81 4.45
5684 7791 0.396060 TTTTTGCATTGGTCCCCAGC 59.604 50.000 0.00 0.00 33.81 4.85
5685 7792 0.762082 TTTTGCATTGGTCCCCAGCA 60.762 50.000 0.00 0.00 33.79 4.41
5688 7795 0.334335 TGCATTGGTCCCCAGCAATA 59.666 50.000 0.00 0.00 46.79 1.90
5689 7796 0.746659 GCATTGGTCCCCAGCAATAC 59.253 55.000 0.00 0.00 46.79 1.89
5690 7797 1.959508 GCATTGGTCCCCAGCAATACA 60.960 52.381 0.00 0.00 46.79 2.29
5691 7798 2.455557 CATTGGTCCCCAGCAATACAA 58.544 47.619 0.00 0.00 46.79 2.41
5692 7799 1.917872 TTGGTCCCCAGCAATACAAC 58.082 50.000 0.00 0.00 35.03 3.32
5693 7800 0.039035 TGGTCCCCAGCAATACAACC 59.961 55.000 0.00 0.00 0.00 3.77
5694 7801 0.683179 GGTCCCCAGCAATACAACCC 60.683 60.000 0.00 0.00 0.00 4.11
5697 7804 1.360852 TCCCCAGCAATACAACCCATT 59.639 47.619 0.00 0.00 0.00 3.16
5698 7805 2.583101 TCCCCAGCAATACAACCCATTA 59.417 45.455 0.00 0.00 0.00 1.90
5699 7806 3.011821 TCCCCAGCAATACAACCCATTAA 59.988 43.478 0.00 0.00 0.00 1.40
5701 7808 3.181491 CCCAGCAATACAACCCATTAACG 60.181 47.826 0.00 0.00 0.00 3.18
5703 7810 3.442273 CAGCAATACAACCCATTAACGGT 59.558 43.478 0.00 0.00 34.07 4.83
5705 7812 3.486209 GCAATACAACCCATTAACGGTCG 60.486 47.826 0.00 0.00 31.48 4.79
5706 7813 1.724429 TACAACCCATTAACGGTCGC 58.276 50.000 0.00 0.00 31.48 5.19
5707 7814 1.293267 ACAACCCATTAACGGTCGCG 61.293 55.000 0.00 0.00 31.48 5.87
5708 7815 1.004679 AACCCATTAACGGTCGCGT 60.005 52.632 5.77 0.00 31.48 6.01
5709 7816 0.246086 AACCCATTAACGGTCGCGTA 59.754 50.000 5.77 0.00 31.48 4.42
5711 7818 1.337635 ACCCATTAACGGTCGCGTAAA 60.338 47.619 5.77 0.00 0.00 2.01
5712 7819 1.325338 CCCATTAACGGTCGCGTAAAG 59.675 52.381 5.77 0.00 0.00 1.85
5713 7820 2.261345 CCATTAACGGTCGCGTAAAGA 58.739 47.619 5.77 0.00 0.00 2.52
5714 7821 2.280708 CCATTAACGGTCGCGTAAAGAG 59.719 50.000 5.77 0.00 0.00 2.85
5715 7822 1.339711 TTAACGGTCGCGTAAAGAGC 58.660 50.000 5.77 0.00 0.00 4.09
5730 7837 1.115467 AGAGCGTCCTCTGGGTTATG 58.885 55.000 0.00 0.00 46.51 1.90
5732 7839 1.523938 GCGTCCTCTGGGTTATGCC 60.524 63.158 0.00 0.00 0.00 4.40
5733 7840 1.904771 CGTCCTCTGGGTTATGCCA 59.095 57.895 0.00 0.00 39.65 4.92
5735 7842 0.618458 GTCCTCTGGGTTATGCCACA 59.382 55.000 0.00 0.00 39.65 4.17
5737 7844 1.490490 TCCTCTGGGTTATGCCACATC 59.510 52.381 0.00 0.00 39.65 3.06
5738 7845 1.586422 CTCTGGGTTATGCCACATCG 58.414 55.000 0.00 0.00 39.65 3.84
5739 7846 1.138859 CTCTGGGTTATGCCACATCGA 59.861 52.381 0.00 0.00 39.65 3.59
5740 7847 1.768275 TCTGGGTTATGCCACATCGAT 59.232 47.619 0.00 0.00 39.65 3.59
5741 7848 2.172505 TCTGGGTTATGCCACATCGATT 59.827 45.455 0.00 0.00 39.65 3.34
5742 7849 2.549754 CTGGGTTATGCCACATCGATTC 59.450 50.000 0.00 0.00 39.65 2.52
5744 7851 3.389656 TGGGTTATGCCACATCGATTCTA 59.610 43.478 0.00 0.00 39.65 2.10
5745 7852 3.746492 GGGTTATGCCACATCGATTCTAC 59.254 47.826 0.00 0.00 39.65 2.59
5746 7853 4.503296 GGGTTATGCCACATCGATTCTACT 60.503 45.833 0.00 0.00 39.65 2.57
5747 7854 4.449068 GGTTATGCCACATCGATTCTACTG 59.551 45.833 0.00 0.00 37.17 2.74
5748 7855 3.827008 ATGCCACATCGATTCTACTGT 57.173 42.857 0.00 0.00 0.00 3.55
5749 7856 3.165058 TGCCACATCGATTCTACTGTC 57.835 47.619 0.00 0.00 0.00 3.51
5750 7857 2.159099 TGCCACATCGATTCTACTGTCC 60.159 50.000 0.00 0.00 0.00 4.02
5751 7858 2.803492 GCCACATCGATTCTACTGTCCC 60.803 54.545 0.00 0.00 0.00 4.46
5752 7859 2.543861 CCACATCGATTCTACTGTCCCG 60.544 54.545 0.00 0.00 0.00 5.14
5753 7860 2.357952 CACATCGATTCTACTGTCCCGA 59.642 50.000 0.00 0.00 0.00 5.14
5754 7861 3.021695 ACATCGATTCTACTGTCCCGAA 58.978 45.455 0.00 0.00 0.00 4.30
5755 7862 3.066900 ACATCGATTCTACTGTCCCGAAG 59.933 47.826 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.558554 TTTAGTCCTCGAGCGCCTGC 62.559 60.000 6.99 0.00 43.24 4.85
2 3 0.103208 ATTTAGTCCTCGAGCGCCTG 59.897 55.000 6.99 0.00 0.00 4.85
3 4 0.386113 GATTTAGTCCTCGAGCGCCT 59.614 55.000 6.99 4.47 0.00 5.52
4 5 0.386113 AGATTTAGTCCTCGAGCGCC 59.614 55.000 6.99 0.00 0.00 6.53
5 6 2.121009 GAAGATTTAGTCCTCGAGCGC 58.879 52.381 6.99 0.00 0.00 5.92
6 7 3.367607 CAGAAGATTTAGTCCTCGAGCG 58.632 50.000 6.99 0.19 0.00 5.03
7 8 3.120041 GCAGAAGATTTAGTCCTCGAGC 58.880 50.000 6.99 0.00 0.00 5.03
8 9 4.647424 AGCAGAAGATTTAGTCCTCGAG 57.353 45.455 5.13 5.13 0.00 4.04
9 10 4.036971 GCTAGCAGAAGATTTAGTCCTCGA 59.963 45.833 10.63 0.00 0.00 4.04
10 11 4.202060 TGCTAGCAGAAGATTTAGTCCTCG 60.202 45.833 14.93 0.00 0.00 4.63
11 12 5.269505 TGCTAGCAGAAGATTTAGTCCTC 57.730 43.478 14.93 0.00 0.00 3.71
12 13 5.885449 ATGCTAGCAGAAGATTTAGTCCT 57.115 39.130 23.89 0.00 0.00 3.85
13 14 6.162777 CCTATGCTAGCAGAAGATTTAGTCC 58.837 44.000 23.89 0.00 0.00 3.85
14 15 6.015010 TCCCTATGCTAGCAGAAGATTTAGTC 60.015 42.308 23.89 0.00 0.00 2.59
15 16 5.841237 TCCCTATGCTAGCAGAAGATTTAGT 59.159 40.000 23.89 4.43 0.00 2.24
16 17 6.352016 TCCCTATGCTAGCAGAAGATTTAG 57.648 41.667 23.89 16.40 0.00 1.85
17 18 6.270927 ACATCCCTATGCTAGCAGAAGATTTA 59.729 38.462 23.89 7.63 36.50 1.40
18 19 5.072872 ACATCCCTATGCTAGCAGAAGATTT 59.927 40.000 23.89 13.05 36.50 2.17
19 20 4.596643 ACATCCCTATGCTAGCAGAAGATT 59.403 41.667 23.89 7.55 36.50 2.40
20 21 4.166539 ACATCCCTATGCTAGCAGAAGAT 58.833 43.478 23.89 18.90 36.50 2.40
21 22 3.581101 ACATCCCTATGCTAGCAGAAGA 58.419 45.455 23.89 17.52 36.50 2.87
22 23 5.674052 ATACATCCCTATGCTAGCAGAAG 57.326 43.478 23.89 20.81 36.50 2.85
23 24 6.183361 ACAAATACATCCCTATGCTAGCAGAA 60.183 38.462 23.89 12.66 36.50 3.02
24 25 5.307976 ACAAATACATCCCTATGCTAGCAGA 59.692 40.000 23.89 18.20 36.50 4.26
25 26 5.555017 ACAAATACATCCCTATGCTAGCAG 58.445 41.667 23.89 10.32 36.50 4.24
26 27 5.567037 ACAAATACATCCCTATGCTAGCA 57.433 39.130 21.85 21.85 36.50 3.49
27 28 6.702329 AGTACAAATACATCCCTATGCTAGC 58.298 40.000 8.10 8.10 36.50 3.42
28 29 7.604164 CCAAGTACAAATACATCCCTATGCTAG 59.396 40.741 0.00 0.00 36.50 3.42
29 30 7.450074 CCAAGTACAAATACATCCCTATGCTA 58.550 38.462 0.00 0.00 36.50 3.49
30 31 6.299141 CCAAGTACAAATACATCCCTATGCT 58.701 40.000 0.00 0.00 36.50 3.79
31 32 5.473504 CCCAAGTACAAATACATCCCTATGC 59.526 44.000 0.00 0.00 36.50 3.14
32 33 5.473504 GCCCAAGTACAAATACATCCCTATG 59.526 44.000 0.00 0.00 39.17 2.23
33 34 5.372661 AGCCCAAGTACAAATACATCCCTAT 59.627 40.000 0.00 0.00 33.30 2.57
34 35 4.724798 AGCCCAAGTACAAATACATCCCTA 59.275 41.667 0.00 0.00 33.30 3.53
35 36 3.527665 AGCCCAAGTACAAATACATCCCT 59.472 43.478 0.00 0.00 33.30 4.20
36 37 3.632145 CAGCCCAAGTACAAATACATCCC 59.368 47.826 0.00 0.00 33.30 3.85
37 38 4.523083 TCAGCCCAAGTACAAATACATCC 58.477 43.478 0.00 0.00 33.30 3.51
38 39 4.035675 GCTCAGCCCAAGTACAAATACATC 59.964 45.833 0.00 0.00 33.30 3.06
39 40 3.947834 GCTCAGCCCAAGTACAAATACAT 59.052 43.478 0.00 0.00 33.30 2.29
40 41 3.244735 TGCTCAGCCCAAGTACAAATACA 60.245 43.478 0.00 0.00 33.30 2.29
41 42 3.343617 TGCTCAGCCCAAGTACAAATAC 58.656 45.455 0.00 0.00 0.00 1.89
42 43 3.712016 TGCTCAGCCCAAGTACAAATA 57.288 42.857 0.00 0.00 0.00 1.40
43 44 2.584835 TGCTCAGCCCAAGTACAAAT 57.415 45.000 0.00 0.00 0.00 2.32
44 45 2.436417 GATGCTCAGCCCAAGTACAAA 58.564 47.619 0.00 0.00 0.00 2.83
45 46 1.340017 GGATGCTCAGCCCAAGTACAA 60.340 52.381 0.00 0.00 0.00 2.41
46 47 0.253044 GGATGCTCAGCCCAAGTACA 59.747 55.000 0.00 0.00 0.00 2.90
47 48 3.086733 GGATGCTCAGCCCAAGTAC 57.913 57.895 0.00 0.00 0.00 2.73
54 55 0.473326 AGAAGATGGGATGCTCAGCC 59.527 55.000 0.00 0.00 35.80 4.85
55 56 3.482156 TTAGAAGATGGGATGCTCAGC 57.518 47.619 0.00 0.00 0.00 4.26
56 57 4.820716 CCTTTTAGAAGATGGGATGCTCAG 59.179 45.833 0.00 0.00 34.71 3.35
57 58 4.785301 CCTTTTAGAAGATGGGATGCTCA 58.215 43.478 0.00 0.00 34.71 4.26
58 59 3.567585 GCCTTTTAGAAGATGGGATGCTC 59.432 47.826 0.00 0.00 34.71 4.26
59 60 3.203934 AGCCTTTTAGAAGATGGGATGCT 59.796 43.478 0.00 0.00 34.71 3.79
60 61 3.560105 AGCCTTTTAGAAGATGGGATGC 58.440 45.455 0.00 0.00 34.71 3.91
61 62 4.140536 GGAGCCTTTTAGAAGATGGGATG 58.859 47.826 0.00 0.00 34.71 3.51
62 63 3.181450 CGGAGCCTTTTAGAAGATGGGAT 60.181 47.826 0.00 0.00 34.71 3.85
63 64 2.170607 CGGAGCCTTTTAGAAGATGGGA 59.829 50.000 0.00 0.00 34.71 4.37
64 65 2.565841 CGGAGCCTTTTAGAAGATGGG 58.434 52.381 0.00 0.00 34.71 4.00
87 88 1.153667 CAGAGGCAAGACGAGGAGC 60.154 63.158 0.00 0.00 0.00 4.70
88 89 0.455410 CTCAGAGGCAAGACGAGGAG 59.545 60.000 0.00 0.00 0.00 3.69
89 90 1.599606 GCTCAGAGGCAAGACGAGGA 61.600 60.000 0.00 0.00 0.00 3.71
90 91 1.153667 GCTCAGAGGCAAGACGAGG 60.154 63.158 0.00 0.00 0.00 4.63
91 92 0.735632 GTGCTCAGAGGCAAGACGAG 60.736 60.000 0.00 0.00 44.18 4.18
92 93 1.290324 GTGCTCAGAGGCAAGACGA 59.710 57.895 0.00 0.00 44.18 4.20
93 94 0.601046 TTGTGCTCAGAGGCAAGACG 60.601 55.000 0.00 0.00 44.18 4.18
94 95 1.155042 CTTGTGCTCAGAGGCAAGAC 58.845 55.000 0.00 0.00 44.18 3.01
95 96 3.620061 CTTGTGCTCAGAGGCAAGA 57.380 52.632 0.00 0.00 44.18 3.02
424 425 9.453572 GCATATCATTTCATTGATAGGTAGGAA 57.546 33.333 7.63 0.00 40.65 3.36
425 426 8.605065 TGCATATCATTTCATTGATAGGTAGGA 58.395 33.333 7.63 0.00 40.65 2.94
426 427 8.671921 GTGCATATCATTTCATTGATAGGTAGG 58.328 37.037 0.00 0.00 40.65 3.18
427 428 9.445878 AGTGCATATCATTTCATTGATAGGTAG 57.554 33.333 0.00 0.00 40.65 3.18
428 429 9.440773 GAGTGCATATCATTTCATTGATAGGTA 57.559 33.333 0.00 1.66 40.65 3.08
429 430 8.162085 AGAGTGCATATCATTTCATTGATAGGT 58.838 33.333 0.00 0.00 40.65 3.08
430 431 8.563123 AGAGTGCATATCATTTCATTGATAGG 57.437 34.615 0.00 2.65 40.82 2.57
431 432 9.827411 CAAGAGTGCATATCATTTCATTGATAG 57.173 33.333 0.00 0.00 40.82 2.08
470 471 4.897140 TGCATCTTGCTTATTGCCTTTTT 58.103 34.783 0.75 0.00 45.31 1.94
471 472 4.540359 TGCATCTTGCTTATTGCCTTTT 57.460 36.364 0.75 0.00 45.31 2.27
472 473 4.540359 TTGCATCTTGCTTATTGCCTTT 57.460 36.364 0.75 0.00 45.31 3.11
473 474 4.748277 ATTGCATCTTGCTTATTGCCTT 57.252 36.364 0.75 0.00 45.31 4.35
474 475 4.439057 CAATTGCATCTTGCTTATTGCCT 58.561 39.130 11.84 0.00 45.31 4.75
475 476 4.789095 CAATTGCATCTTGCTTATTGCC 57.211 40.909 11.84 0.00 45.31 4.52
505 506 3.264998 TCCCCCGACCTTTTAATTACG 57.735 47.619 0.00 0.00 0.00 3.18
544 545 2.954611 TCACTCTCGTGACTGGCG 59.045 61.111 0.00 0.00 44.85 5.69
578 579 7.425606 CAAGTGGTTTGTTAGTTTTATCTGCT 58.574 34.615 0.00 0.00 31.92 4.24
632 634 2.799412 CGATCTTGTTAGCTCAGATGGC 59.201 50.000 0.00 0.00 0.00 4.40
633 635 4.313277 TCGATCTTGTTAGCTCAGATGG 57.687 45.455 0.00 0.00 0.00 3.51
644 646 3.000727 GGTTTGGACGATCGATCTTGTT 58.999 45.455 24.34 4.76 0.00 2.83
645 647 2.028476 TGGTTTGGACGATCGATCTTGT 60.028 45.455 24.34 14.06 0.00 3.16
706 708 2.874457 GCTTGACCCTATCAACGGTTGT 60.874 50.000 19.47 10.23 42.62 3.32
727 729 3.270877 AGCTAGGCGTTTTTGTATGGAG 58.729 45.455 0.00 0.00 0.00 3.86
729 731 5.751243 ATTAGCTAGGCGTTTTTGTATGG 57.249 39.130 0.00 0.00 0.00 2.74
771 773 2.432285 CGGCCGGGTTTTGCATTG 60.432 61.111 20.10 0.00 0.00 2.82
1073 1081 3.383761 CTGCTTGCGGTTTTTCTTGAAT 58.616 40.909 0.00 0.00 0.00 2.57
2114 2122 2.063979 CATGGCAGGACTCGGGGTA 61.064 63.158 0.00 0.00 0.00 3.69
2172 2180 3.013932 AGCCCTGCCTTCCTCCAG 61.014 66.667 0.00 0.00 0.00 3.86
2261 2272 1.299976 GCTTGATTCTCCCCGTGGT 59.700 57.895 0.00 0.00 0.00 4.16
2429 2453 1.216710 CGTTGACTCCTCTGCTCCC 59.783 63.158 0.00 0.00 0.00 4.30
2524 2551 3.840124 ACCGATAAGGAGTGGGAAATC 57.160 47.619 0.00 0.00 45.00 2.17
2751 2781 1.278172 CTCTGTCGAACCAGTGCACG 61.278 60.000 12.01 6.45 34.02 5.34
2867 2897 4.021925 GGTTCCGGCAGTGCTCCT 62.022 66.667 16.11 0.00 0.00 3.69
2950 2980 3.197790 CACGCTGAGCCCCGAATG 61.198 66.667 0.00 0.00 0.00 2.67
2952 2982 4.373116 GACACGCTGAGCCCCGAA 62.373 66.667 0.00 0.00 0.00 4.30
2989 3019 2.969238 GATCGCCATGAGGTGCCG 60.969 66.667 0.00 0.00 45.27 5.69
3094 3124 1.694169 ATGAACCCTCCGCCCTGAT 60.694 57.895 0.00 0.00 0.00 2.90
3097 3127 4.115199 GCATGAACCCTCCGCCCT 62.115 66.667 0.00 0.00 0.00 5.19
3108 3138 1.804151 GCCACGTAGTTTCTGCATGAA 59.196 47.619 0.00 0.00 41.61 2.57
3109 3139 1.001974 AGCCACGTAGTTTCTGCATGA 59.998 47.619 0.00 0.00 41.61 3.07
3110 3140 1.129251 CAGCCACGTAGTTTCTGCATG 59.871 52.381 0.00 0.00 41.61 4.06
3111 3141 1.270839 ACAGCCACGTAGTTTCTGCAT 60.271 47.619 0.00 0.00 41.61 3.96
3112 3142 0.105964 ACAGCCACGTAGTTTCTGCA 59.894 50.000 0.00 0.00 41.61 4.41
3113 3143 0.512952 CACAGCCACGTAGTTTCTGC 59.487 55.000 0.00 0.00 41.61 4.26
3117 3147 0.034896 CCCTCACAGCCACGTAGTTT 59.965 55.000 0.00 0.00 41.61 2.66
3153 3183 2.125350 CTCTGCAGAAGCCGGACC 60.125 66.667 18.85 0.00 41.13 4.46
3156 3186 4.441695 TCGCTCTGCAGAAGCCGG 62.442 66.667 18.85 6.71 41.13 6.13
3251 3283 8.608317 CCATGTACGTATGTATTTTCATGTCAA 58.392 33.333 16.32 0.00 33.09 3.18
3285 3317 6.122850 TCATCAGACAAAAACACAGACAAG 57.877 37.500 0.00 0.00 0.00 3.16
3286 3318 6.507958 TTCATCAGACAAAAACACAGACAA 57.492 33.333 0.00 0.00 0.00 3.18
3288 3320 6.728200 TCATTCATCAGACAAAAACACAGAC 58.272 36.000 0.00 0.00 0.00 3.51
3291 3323 6.471841 CGTTTCATTCATCAGACAAAAACACA 59.528 34.615 0.00 0.00 0.00 3.72
3292 3324 6.472163 ACGTTTCATTCATCAGACAAAAACAC 59.528 34.615 0.00 0.00 0.00 3.32
3293 3325 6.471841 CACGTTTCATTCATCAGACAAAAACA 59.528 34.615 0.00 0.00 0.00 2.83
3294 3326 6.560251 GCACGTTTCATTCATCAGACAAAAAC 60.560 38.462 0.00 0.00 0.00 2.43
3295 3327 5.458452 GCACGTTTCATTCATCAGACAAAAA 59.542 36.000 0.00 0.00 0.00 1.94
3307 3339 3.722123 CGACAGTTAGCACGTTTCATTC 58.278 45.455 0.00 0.00 0.00 2.67
3308 3340 2.096417 GCGACAGTTAGCACGTTTCATT 60.096 45.455 0.00 0.00 0.00 2.57
3309 3341 1.459592 GCGACAGTTAGCACGTTTCAT 59.540 47.619 0.00 0.00 0.00 2.57
3310 3342 0.856641 GCGACAGTTAGCACGTTTCA 59.143 50.000 0.00 0.00 0.00 2.69
3319 3351 0.970937 TCCCCTCCTGCGACAGTTAG 60.971 60.000 6.19 3.81 0.00 2.34
3323 3355 1.153289 CATTCCCCTCCTGCGACAG 60.153 63.158 0.00 0.00 0.00 3.51
3325 3357 2.190578 CCATTCCCCTCCTGCGAC 59.809 66.667 0.00 0.00 0.00 5.19
3332 3367 2.532250 ACATTTCCACCATTCCCCTC 57.468 50.000 0.00 0.00 0.00 4.30
3337 3372 5.331902 CACGTATGAACATTTCCACCATTC 58.668 41.667 0.00 0.00 0.00 2.67
3348 3383 3.126858 GTGCACAATCCACGTATGAACAT 59.873 43.478 13.17 0.00 0.00 2.71
3359 3394 2.593148 AACGCCGTGCACAATCCA 60.593 55.556 18.64 0.00 0.00 3.41
3373 3408 1.071019 CATCGTCTCGGTGACCAACG 61.071 60.000 13.08 13.08 40.81 4.10
3376 3411 1.303806 TCCATCGTCTCGGTGACCA 60.304 57.895 1.11 0.00 40.81 4.02
3409 3444 2.881352 CCGGCGAGCTTCGAAGAC 60.881 66.667 28.95 18.66 43.74 3.01
3493 3528 2.493278 ACAAAATGTGTAGGGCTGATGC 59.507 45.455 0.00 0.00 39.29 3.91
3536 3572 1.779569 ATCTCGTTGTTCCACGACAC 58.220 50.000 0.00 0.00 44.18 3.67
3546 3583 9.290988 ACAGATATTCAGACTATATCTCGTTGT 57.709 33.333 5.19 0.77 41.24 3.32
3557 3594 9.890629 AACATGCTTTTACAGATATTCAGACTA 57.109 29.630 0.00 0.00 0.00 2.59
3558 3595 8.798859 AACATGCTTTTACAGATATTCAGACT 57.201 30.769 0.00 0.00 0.00 3.24
3711 3753 2.311542 AGACTCTGTGAGGATCCTGACT 59.688 50.000 28.49 11.37 33.35 3.41
3713 3755 2.580322 AGAGACTCTGTGAGGATCCTGA 59.420 50.000 22.02 8.33 33.35 3.86
3873 3915 2.122547 ACGGGTGTGGAGGAAGGT 60.123 61.111 0.00 0.00 0.00 3.50
3877 3919 1.458777 AAGTGACGGGTGTGGAGGA 60.459 57.895 0.00 0.00 0.00 3.71
3880 3922 2.863346 CGGAAGTGACGGGTGTGGA 61.863 63.158 0.00 0.00 0.00 4.02
3903 3945 0.880278 CACGCTGTACCTGCACTGTT 60.880 55.000 8.36 0.00 0.00 3.16
3921 3963 0.675208 AACCATGCGTCGGTATTGCA 60.675 50.000 0.00 0.00 43.67 4.08
3922 3964 0.450184 AAACCATGCGTCGGTATTGC 59.550 50.000 0.00 0.00 34.99 3.56
3923 3965 1.735018 TGAAACCATGCGTCGGTATTG 59.265 47.619 0.00 0.00 34.99 1.90
3924 3966 2.102070 TGAAACCATGCGTCGGTATT 57.898 45.000 0.00 0.00 34.99 1.89
3925 3967 1.735571 GTTGAAACCATGCGTCGGTAT 59.264 47.619 0.00 0.00 34.99 2.73
3926 3968 1.149987 GTTGAAACCATGCGTCGGTA 58.850 50.000 0.00 0.00 34.99 4.02
3927 3969 1.837538 CGTTGAAACCATGCGTCGGT 61.838 55.000 0.00 0.00 38.85 4.69
3928 3970 1.154488 CGTTGAAACCATGCGTCGG 60.154 57.895 0.00 0.00 0.00 4.79
3929 3971 1.154488 CCGTTGAAACCATGCGTCG 60.154 57.895 0.00 0.00 0.00 5.12
3930 3972 0.309612 AACCGTTGAAACCATGCGTC 59.690 50.000 0.00 0.00 0.00 5.19
3931 3973 0.741915 AAACCGTTGAAACCATGCGT 59.258 45.000 0.00 0.00 0.00 5.24
3933 3975 2.034053 TCAGAAACCGTTGAAACCATGC 59.966 45.455 0.00 0.00 0.00 4.06
3934 3976 3.315191 ACTCAGAAACCGTTGAAACCATG 59.685 43.478 0.00 0.00 0.00 3.66
3935 3977 3.551846 ACTCAGAAACCGTTGAAACCAT 58.448 40.909 0.00 0.00 0.00 3.55
3936 3978 2.993937 ACTCAGAAACCGTTGAAACCA 58.006 42.857 0.00 0.00 0.00 3.67
3938 3980 4.331717 TCAGAACTCAGAAACCGTTGAAAC 59.668 41.667 0.00 0.00 0.00 2.78
3939 3981 4.331717 GTCAGAACTCAGAAACCGTTGAAA 59.668 41.667 0.00 0.00 0.00 2.69
3955 4001 2.471743 GTGCGTTGAGTGTAGTCAGAAC 59.528 50.000 0.00 0.00 0.00 3.01
3956 4002 2.361119 AGTGCGTTGAGTGTAGTCAGAA 59.639 45.455 0.00 0.00 0.00 3.02
3962 4008 1.139989 CACCAGTGCGTTGAGTGTAG 58.860 55.000 0.00 0.00 0.00 2.74
3963 4009 0.462375 ACACCAGTGCGTTGAGTGTA 59.538 50.000 0.00 0.00 39.77 2.90
3964 4010 0.392461 AACACCAGTGCGTTGAGTGT 60.392 50.000 0.00 7.96 43.21 3.55
3987 4038 1.404986 CCGTCTCCTAATCACGGCAAA 60.405 52.381 0.00 0.00 46.08 3.68
3997 4052 3.145551 GCCGCCTCCGTCTCCTAA 61.146 66.667 0.00 0.00 0.00 2.69
4341 4396 5.287274 CGAGGCGCTGATAAGTGATAATTAG 59.713 44.000 7.64 0.00 0.00 1.73
4365 4426 0.367887 GCGGTTTTCGTGGTCGATAC 59.632 55.000 0.00 0.00 45.65 2.24
4370 4431 1.764180 TTCGTGCGGTTTTCGTGGTC 61.764 55.000 0.00 0.00 41.72 4.02
4411 4506 0.109919 TCCGACGTCGTGTCTCAATG 60.110 55.000 33.49 16.62 45.87 2.82
4413 4508 1.572941 CTCCGACGTCGTGTCTCAA 59.427 57.895 33.49 10.90 45.87 3.02
4414 4509 2.962827 GCTCCGACGTCGTGTCTCA 61.963 63.158 33.49 11.18 45.87 3.27
4415 4510 2.202324 GCTCCGACGTCGTGTCTC 60.202 66.667 33.49 15.46 45.87 3.36
4416 4511 2.668889 AGCTCCGACGTCGTGTCT 60.669 61.111 33.49 23.18 45.87 3.41
4439 4552 1.273606 CAGTCCGTCAGTCAATGGAGT 59.726 52.381 0.00 0.00 38.32 3.85
4453 4566 1.515088 CTGCACGTAGCTCAGTCCG 60.515 63.158 10.54 0.00 45.94 4.79
4454 4567 0.456995 GTCTGCACGTAGCTCAGTCC 60.457 60.000 10.54 0.00 45.94 3.85
4455 4568 0.523966 AGTCTGCACGTAGCTCAGTC 59.476 55.000 10.54 0.00 45.94 3.51
4456 4569 0.242286 CAGTCTGCACGTAGCTCAGT 59.758 55.000 10.54 0.00 45.94 3.41
4758 4871 4.487019 ACGAAGCTGCTACTAAAAGAGTC 58.513 43.478 0.90 0.00 39.81 3.36
4807 4920 3.434641 CACACTGCACAGTTGGATCTTAG 59.565 47.826 0.00 0.00 40.20 2.18
4822 4935 3.911661 AGCTTCAAGAAATCACACTGC 57.088 42.857 0.00 0.00 0.00 4.40
4838 4951 4.408182 ACTCAGTGTTCTGTACAAGCTT 57.592 40.909 0.00 0.00 41.91 3.74
4839 4952 5.011125 ACATACTCAGTGTTCTGTACAAGCT 59.989 40.000 0.00 0.00 41.91 3.74
4840 4953 5.230942 ACATACTCAGTGTTCTGTACAAGC 58.769 41.667 0.00 0.00 41.91 4.01
4843 4956 5.702209 TCGTACATACTCAGTGTTCTGTACA 59.298 40.000 18.59 0.00 41.51 2.90
4844 4957 6.174451 TCGTACATACTCAGTGTTCTGTAC 57.826 41.667 13.26 13.26 41.91 2.90
4845 4958 6.596497 TCATCGTACATACTCAGTGTTCTGTA 59.404 38.462 0.00 0.00 41.91 2.74
4846 4959 5.414765 TCATCGTACATACTCAGTGTTCTGT 59.585 40.000 0.00 0.00 41.91 3.41
4848 4961 5.066634 CCTCATCGTACATACTCAGTGTTCT 59.933 44.000 0.00 0.00 0.00 3.01
4849 4962 5.274718 CCTCATCGTACATACTCAGTGTTC 58.725 45.833 0.00 0.00 0.00 3.18
4850 4963 4.440250 GCCTCATCGTACATACTCAGTGTT 60.440 45.833 0.00 0.00 0.00 3.32
4851 4964 3.066900 GCCTCATCGTACATACTCAGTGT 59.933 47.826 0.00 0.00 0.00 3.55
4852 4965 3.633235 GCCTCATCGTACATACTCAGTG 58.367 50.000 0.00 0.00 0.00 3.66
4855 4968 1.001706 GCGCCTCATCGTACATACTCA 60.002 52.381 0.00 0.00 0.00 3.41
4856 4969 1.666311 GGCGCCTCATCGTACATACTC 60.666 57.143 22.15 0.00 0.00 2.59
4858 4971 1.002250 CGGCGCCTCATCGTACATAC 61.002 60.000 26.68 0.00 0.00 2.39
4861 4974 4.201679 CCGGCGCCTCATCGTACA 62.202 66.667 26.68 0.00 0.00 2.90
4947 5067 0.961857 TACAAGCAGCACATGGCCTG 60.962 55.000 3.32 9.72 46.50 4.85
5019 5139 0.035439 AACCCTAATCCACCGCACAG 60.035 55.000 0.00 0.00 0.00 3.66
5022 5142 1.301623 CCAACCCTAATCCACCGCA 59.698 57.895 0.00 0.00 0.00 5.69
5047 5168 1.068753 CATGCCCTCGTAGCTCCAG 59.931 63.158 0.00 0.00 0.00 3.86
5059 5180 2.428544 TACCACCATTGTACATGCCC 57.571 50.000 0.00 0.00 0.00 5.36
5061 5182 7.117812 GTGTCTATATACCACCATTGTACATGC 59.882 40.741 0.00 0.00 0.00 4.06
5062 5183 8.147704 TGTGTCTATATACCACCATTGTACATG 58.852 37.037 0.00 0.00 0.00 3.21
5063 5184 8.257602 TGTGTCTATATACCACCATTGTACAT 57.742 34.615 0.00 0.00 0.00 2.29
5064 5185 7.663043 TGTGTCTATATACCACCATTGTACA 57.337 36.000 0.00 0.00 0.00 2.90
5067 5188 8.880244 ACATATGTGTCTATATACCACCATTGT 58.120 33.333 7.78 4.36 31.41 2.71
5140 5261 5.127194 GGATTGGATGTGTAGTGTGAGACTA 59.873 44.000 0.00 0.00 35.96 2.59
5141 5262 4.081420 GGATTGGATGTGTAGTGTGAGACT 60.081 45.833 0.00 0.00 38.88 3.24
5142 5263 4.081420 AGGATTGGATGTGTAGTGTGAGAC 60.081 45.833 0.00 0.00 0.00 3.36
5143 5264 4.096681 AGGATTGGATGTGTAGTGTGAGA 58.903 43.478 0.00 0.00 0.00 3.27
5144 5265 4.478206 AGGATTGGATGTGTAGTGTGAG 57.522 45.455 0.00 0.00 0.00 3.51
5145 5266 5.023452 AGTAGGATTGGATGTGTAGTGTGA 58.977 41.667 0.00 0.00 0.00 3.58
5146 5267 5.344743 AGTAGGATTGGATGTGTAGTGTG 57.655 43.478 0.00 0.00 0.00 3.82
5147 5268 6.374417 AAAGTAGGATTGGATGTGTAGTGT 57.626 37.500 0.00 0.00 0.00 3.55
5148 5269 6.878923 TGAAAAGTAGGATTGGATGTGTAGTG 59.121 38.462 0.00 0.00 0.00 2.74
5149 5270 6.879458 GTGAAAAGTAGGATTGGATGTGTAGT 59.121 38.462 0.00 0.00 0.00 2.73
5150 5271 7.106239 AGTGAAAAGTAGGATTGGATGTGTAG 58.894 38.462 0.00 0.00 0.00 2.74
5151 5272 7.016153 AGTGAAAAGTAGGATTGGATGTGTA 57.984 36.000 0.00 0.00 0.00 2.90
5152 5273 5.880901 AGTGAAAAGTAGGATTGGATGTGT 58.119 37.500 0.00 0.00 0.00 3.72
5153 5274 6.430925 TGAAGTGAAAAGTAGGATTGGATGTG 59.569 38.462 0.00 0.00 0.00 3.21
5154 5275 6.542821 TGAAGTGAAAAGTAGGATTGGATGT 58.457 36.000 0.00 0.00 0.00 3.06
5155 5276 7.175641 AGTTGAAGTGAAAAGTAGGATTGGATG 59.824 37.037 0.00 0.00 0.00 3.51
5156 5277 7.234355 AGTTGAAGTGAAAAGTAGGATTGGAT 58.766 34.615 0.00 0.00 0.00 3.41
5157 5278 6.601332 AGTTGAAGTGAAAAGTAGGATTGGA 58.399 36.000 0.00 0.00 0.00 3.53
5158 5279 6.884280 AGTTGAAGTGAAAAGTAGGATTGG 57.116 37.500 0.00 0.00 0.00 3.16
5159 5280 9.586435 AAAAAGTTGAAGTGAAAAGTAGGATTG 57.414 29.630 0.00 0.00 0.00 2.67
5160 5281 9.803315 GAAAAAGTTGAAGTGAAAAGTAGGATT 57.197 29.630 0.00 0.00 0.00 3.01
5161 5282 8.966868 TGAAAAAGTTGAAGTGAAAAGTAGGAT 58.033 29.630 0.00 0.00 0.00 3.24
5162 5283 8.343168 TGAAAAAGTTGAAGTGAAAAGTAGGA 57.657 30.769 0.00 0.00 0.00 2.94
5163 5284 8.860128 GTTGAAAAAGTTGAAGTGAAAAGTAGG 58.140 33.333 0.00 0.00 0.00 3.18
5164 5285 9.626045 AGTTGAAAAAGTTGAAGTGAAAAGTAG 57.374 29.630 0.00 0.00 0.00 2.57
5165 5286 9.974980 AAGTTGAAAAAGTTGAAGTGAAAAGTA 57.025 25.926 0.00 0.00 0.00 2.24
5166 5287 8.887036 AAGTTGAAAAAGTTGAAGTGAAAAGT 57.113 26.923 0.00 0.00 0.00 2.66
5167 5288 8.977505 TGAAGTTGAAAAAGTTGAAGTGAAAAG 58.022 29.630 0.00 0.00 0.00 2.27
5168 5289 8.879342 TGAAGTTGAAAAAGTTGAAGTGAAAA 57.121 26.923 0.00 0.00 0.00 2.29
5170 5291 9.567848 GTATGAAGTTGAAAAAGTTGAAGTGAA 57.432 29.630 0.00 0.00 0.00 3.18
5171 5292 8.735315 TGTATGAAGTTGAAAAAGTTGAAGTGA 58.265 29.630 0.00 0.00 0.00 3.41
5172 5293 8.909708 TGTATGAAGTTGAAAAAGTTGAAGTG 57.090 30.769 0.00 0.00 0.00 3.16
5173 5294 9.736023 GATGTATGAAGTTGAAAAAGTTGAAGT 57.264 29.630 0.00 0.00 0.00 3.01
5174 5295 9.734620 TGATGTATGAAGTTGAAAAAGTTGAAG 57.265 29.630 0.00 0.00 0.00 3.02
5175 5296 9.734620 CTGATGTATGAAGTTGAAAAAGTTGAA 57.265 29.630 0.00 0.00 0.00 2.69
5176 5297 9.119418 TCTGATGTATGAAGTTGAAAAAGTTGA 57.881 29.630 0.00 0.00 0.00 3.18
5177 5298 9.173939 GTCTGATGTATGAAGTTGAAAAAGTTG 57.826 33.333 0.00 0.00 0.00 3.16
5178 5299 8.352942 GGTCTGATGTATGAAGTTGAAAAAGTT 58.647 33.333 0.00 0.00 0.00 2.66
5179 5300 7.040409 GGGTCTGATGTATGAAGTTGAAAAAGT 60.040 37.037 0.00 0.00 0.00 2.66
5180 5301 7.308435 GGGTCTGATGTATGAAGTTGAAAAAG 58.692 38.462 0.00 0.00 0.00 2.27
5181 5302 6.208599 GGGGTCTGATGTATGAAGTTGAAAAA 59.791 38.462 0.00 0.00 0.00 1.94
5182 5303 5.710099 GGGGTCTGATGTATGAAGTTGAAAA 59.290 40.000 0.00 0.00 0.00 2.29
5183 5304 5.222027 TGGGGTCTGATGTATGAAGTTGAAA 60.222 40.000 0.00 0.00 0.00 2.69
5184 5305 4.288366 TGGGGTCTGATGTATGAAGTTGAA 59.712 41.667 0.00 0.00 0.00 2.69
5185 5306 3.843619 TGGGGTCTGATGTATGAAGTTGA 59.156 43.478 0.00 0.00 0.00 3.18
5186 5307 3.941483 GTGGGGTCTGATGTATGAAGTTG 59.059 47.826 0.00 0.00 0.00 3.16
5187 5308 3.054361 GGTGGGGTCTGATGTATGAAGTT 60.054 47.826 0.00 0.00 0.00 2.66
5188 5309 2.505819 GGTGGGGTCTGATGTATGAAGT 59.494 50.000 0.00 0.00 0.00 3.01
5189 5310 2.774234 AGGTGGGGTCTGATGTATGAAG 59.226 50.000 0.00 0.00 0.00 3.02
5190 5311 2.845659 AGGTGGGGTCTGATGTATGAA 58.154 47.619 0.00 0.00 0.00 2.57
5191 5312 2.568546 AGGTGGGGTCTGATGTATGA 57.431 50.000 0.00 0.00 0.00 2.15
5192 5313 3.652057 AAAGGTGGGGTCTGATGTATG 57.348 47.619 0.00 0.00 0.00 2.39
5193 5314 3.852578 AGAAAAGGTGGGGTCTGATGTAT 59.147 43.478 0.00 0.00 0.00 2.29
5194 5315 3.256704 AGAAAAGGTGGGGTCTGATGTA 58.743 45.455 0.00 0.00 0.00 2.29
5195 5316 2.040412 GAGAAAAGGTGGGGTCTGATGT 59.960 50.000 0.00 0.00 0.00 3.06
5196 5317 2.307098 AGAGAAAAGGTGGGGTCTGATG 59.693 50.000 0.00 0.00 0.00 3.07
5197 5318 2.637165 AGAGAAAAGGTGGGGTCTGAT 58.363 47.619 0.00 0.00 0.00 2.90
5198 5319 2.118403 AGAGAAAAGGTGGGGTCTGA 57.882 50.000 0.00 0.00 0.00 3.27
5199 5320 2.106511 TGAAGAGAAAAGGTGGGGTCTG 59.893 50.000 0.00 0.00 0.00 3.51
5200 5321 2.418669 TGAAGAGAAAAGGTGGGGTCT 58.581 47.619 0.00 0.00 0.00 3.85
5201 5322 2.951229 TGAAGAGAAAAGGTGGGGTC 57.049 50.000 0.00 0.00 0.00 4.46
5202 5323 2.514160 ACTTGAAGAGAAAAGGTGGGGT 59.486 45.455 0.00 0.00 0.00 4.95
5203 5324 3.229697 ACTTGAAGAGAAAAGGTGGGG 57.770 47.619 0.00 0.00 0.00 4.96
5204 5325 4.072839 GGTACTTGAAGAGAAAAGGTGGG 58.927 47.826 0.00 0.00 0.00 4.61
5205 5326 4.757149 CAGGTACTTGAAGAGAAAAGGTGG 59.243 45.833 0.00 0.00 34.60 4.61
5206 5327 4.214332 GCAGGTACTTGAAGAGAAAAGGTG 59.786 45.833 9.51 0.00 34.60 4.00
5207 5328 4.103311 AGCAGGTACTTGAAGAGAAAAGGT 59.897 41.667 9.51 0.00 34.60 3.50
5208 5329 4.646572 AGCAGGTACTTGAAGAGAAAAGG 58.353 43.478 9.51 0.00 34.60 3.11
5209 5330 5.180304 GGAAGCAGGTACTTGAAGAGAAAAG 59.820 44.000 9.51 0.00 34.60 2.27
5210 5331 5.063880 GGAAGCAGGTACTTGAAGAGAAAA 58.936 41.667 9.51 0.00 34.60 2.29
5211 5332 4.348168 AGGAAGCAGGTACTTGAAGAGAAA 59.652 41.667 9.51 0.00 34.60 2.52
5212 5333 3.904339 AGGAAGCAGGTACTTGAAGAGAA 59.096 43.478 9.51 0.00 34.60 2.87
5213 5334 3.259374 CAGGAAGCAGGTACTTGAAGAGA 59.741 47.826 9.51 0.00 34.60 3.10
5214 5335 3.594134 CAGGAAGCAGGTACTTGAAGAG 58.406 50.000 9.51 0.00 34.60 2.85
5215 5336 2.289694 GCAGGAAGCAGGTACTTGAAGA 60.290 50.000 9.51 0.00 44.79 2.87
5216 5337 2.079925 GCAGGAAGCAGGTACTTGAAG 58.920 52.381 9.51 0.00 44.79 3.02
5217 5338 2.185004 GCAGGAAGCAGGTACTTGAA 57.815 50.000 9.51 0.00 44.79 2.69
5218 5339 3.935993 GCAGGAAGCAGGTACTTGA 57.064 52.632 9.51 0.00 44.79 3.02
5232 5353 2.553904 GGGATGTGGAATCCTATGCAGG 60.554 54.545 0.00 0.00 44.17 4.85
5233 5354 2.374504 AGGGATGTGGAATCCTATGCAG 59.625 50.000 0.00 0.00 38.26 4.41
5234 5355 2.421725 AGGGATGTGGAATCCTATGCA 58.578 47.619 0.00 0.00 38.26 3.96
5235 5356 4.521146 CATAGGGATGTGGAATCCTATGC 58.479 47.826 13.20 0.53 46.66 3.14
5237 5358 3.198635 CGCATAGGGATGTGGAATCCTAT 59.801 47.826 0.00 0.00 41.71 2.57
5238 5359 2.567169 CGCATAGGGATGTGGAATCCTA 59.433 50.000 0.00 0.00 39.49 2.94
5239 5360 1.349026 CGCATAGGGATGTGGAATCCT 59.651 52.381 0.00 0.00 39.49 3.24
5240 5361 1.347707 TCGCATAGGGATGTGGAATCC 59.652 52.381 0.00 0.00 42.76 3.01
5241 5362 2.808543 GTTCGCATAGGGATGTGGAATC 59.191 50.000 0.00 0.00 42.76 2.52
5242 5363 2.806745 CGTTCGCATAGGGATGTGGAAT 60.807 50.000 0.00 0.00 42.76 3.01
5243 5364 1.472552 CGTTCGCATAGGGATGTGGAA 60.473 52.381 0.00 0.00 42.76 3.53
5244 5365 0.104120 CGTTCGCATAGGGATGTGGA 59.896 55.000 0.00 0.00 42.76 4.02
5245 5366 0.179084 ACGTTCGCATAGGGATGTGG 60.179 55.000 0.00 0.00 42.76 4.17
5246 5367 2.502213 TACGTTCGCATAGGGATGTG 57.498 50.000 0.00 0.00 43.71 3.21
5247 5368 3.746045 AATACGTTCGCATAGGGATGT 57.254 42.857 0.00 0.00 35.30 3.06
5248 5369 5.418310 AAAAATACGTTCGCATAGGGATG 57.582 39.130 0.00 0.00 36.02 3.51
5267 5388 5.414789 TGTAGGATCGGATGTCAGAAAAA 57.585 39.130 0.00 0.00 0.00 1.94
5268 5389 5.128663 TCATGTAGGATCGGATGTCAGAAAA 59.871 40.000 0.00 0.00 0.00 2.29
5269 5390 4.649218 TCATGTAGGATCGGATGTCAGAAA 59.351 41.667 0.00 0.00 0.00 2.52
5270 5391 4.038042 GTCATGTAGGATCGGATGTCAGAA 59.962 45.833 0.00 0.00 0.00 3.02
5271 5392 3.570125 GTCATGTAGGATCGGATGTCAGA 59.430 47.826 0.00 0.00 0.00 3.27
5272 5393 3.319122 TGTCATGTAGGATCGGATGTCAG 59.681 47.826 0.00 0.00 0.00 3.51
5273 5394 3.295973 TGTCATGTAGGATCGGATGTCA 58.704 45.455 0.00 0.00 0.00 3.58
5274 5395 4.240888 CATGTCATGTAGGATCGGATGTC 58.759 47.826 4.53 0.00 0.00 3.06
5275 5396 3.555795 GCATGTCATGTAGGATCGGATGT 60.556 47.826 14.26 0.00 0.00 3.06
5276 5397 2.998670 GCATGTCATGTAGGATCGGATG 59.001 50.000 14.26 0.00 0.00 3.51
5277 5398 2.353109 CGCATGTCATGTAGGATCGGAT 60.353 50.000 14.26 0.00 0.00 4.18
5278 5399 1.000274 CGCATGTCATGTAGGATCGGA 60.000 52.381 14.26 0.00 0.00 4.55
5279 5400 1.000274 TCGCATGTCATGTAGGATCGG 60.000 52.381 14.26 0.00 0.00 4.18
5280 5401 2.323059 CTCGCATGTCATGTAGGATCG 58.677 52.381 14.26 8.08 0.00 3.69
5281 5402 2.681706 CCTCGCATGTCATGTAGGATC 58.318 52.381 22.46 3.88 37.59 3.36
5282 5403 1.270518 GCCTCGCATGTCATGTAGGAT 60.271 52.381 27.47 0.00 37.59 3.24
5283 5404 0.104855 GCCTCGCATGTCATGTAGGA 59.895 55.000 27.47 16.66 37.59 2.94
5284 5405 0.179076 TGCCTCGCATGTCATGTAGG 60.179 55.000 22.54 22.54 38.09 3.18
5285 5406 3.367678 TGCCTCGCATGTCATGTAG 57.632 52.632 14.26 11.40 31.71 2.74
5300 5421 1.141657 TCATAGCCTCAAGGTGATGCC 59.858 52.381 0.00 0.00 38.54 4.40
5301 5422 2.615912 GTTCATAGCCTCAAGGTGATGC 59.384 50.000 0.00 0.00 38.13 3.91
5302 5423 3.875727 CAGTTCATAGCCTCAAGGTGATG 59.124 47.826 0.00 2.51 37.57 3.07
5303 5424 3.683847 GCAGTTCATAGCCTCAAGGTGAT 60.684 47.826 0.00 0.00 37.57 3.06
5304 5425 2.355108 GCAGTTCATAGCCTCAAGGTGA 60.355 50.000 0.00 0.00 37.57 4.02
5305 5426 2.012673 GCAGTTCATAGCCTCAAGGTG 58.987 52.381 0.00 0.00 37.57 4.00
5306 5427 2.409948 GCAGTTCATAGCCTCAAGGT 57.590 50.000 0.00 0.00 37.57 3.50
5314 5435 0.752743 TGGGCATGGCAGTTCATAGC 60.753 55.000 22.06 0.33 0.00 2.97
5315 5436 1.766494 TTGGGCATGGCAGTTCATAG 58.234 50.000 22.06 0.00 0.00 2.23
5316 5437 1.824230 GTTTGGGCATGGCAGTTCATA 59.176 47.619 22.06 2.06 0.00 2.15
5317 5438 0.609662 GTTTGGGCATGGCAGTTCAT 59.390 50.000 22.06 0.00 0.00 2.57
5318 5439 0.469705 AGTTTGGGCATGGCAGTTCA 60.470 50.000 22.06 6.72 0.00 3.18
5319 5440 0.681175 AAGTTTGGGCATGGCAGTTC 59.319 50.000 22.06 8.45 0.00 3.01
5320 5441 0.393820 CAAGTTTGGGCATGGCAGTT 59.606 50.000 22.06 6.96 0.00 3.16
5321 5442 2.051941 CAAGTTTGGGCATGGCAGT 58.948 52.632 22.06 0.10 0.00 4.40
5322 5443 1.375013 GCAAGTTTGGGCATGGCAG 60.375 57.895 22.06 2.61 0.00 4.85
5323 5444 2.138831 TGCAAGTTTGGGCATGGCA 61.139 52.632 22.06 4.40 34.58 4.92
5324 5445 1.668793 GTGCAAGTTTGGGCATGGC 60.669 57.895 11.56 11.56 42.75 4.40
5325 5446 0.600782 GTGTGCAAGTTTGGGCATGG 60.601 55.000 0.00 0.00 42.75 3.66
5326 5447 0.104487 TGTGTGCAAGTTTGGGCATG 59.896 50.000 0.00 0.00 42.75 4.06
5327 5448 1.050204 ATGTGTGCAAGTTTGGGCAT 58.950 45.000 0.00 0.00 42.75 4.40
5328 5449 1.612950 CTATGTGTGCAAGTTTGGGCA 59.387 47.619 0.00 0.00 37.77 5.36
5329 5450 1.669795 GCTATGTGTGCAAGTTTGGGC 60.670 52.381 0.00 0.00 0.00 5.36
5330 5451 1.612950 TGCTATGTGTGCAAGTTTGGG 59.387 47.619 0.00 0.00 37.51 4.12
5331 5452 3.367992 TTGCTATGTGTGCAAGTTTGG 57.632 42.857 0.00 0.00 44.24 3.28
5337 5458 3.005261 ACCGAATTTTGCTATGTGTGCAA 59.995 39.130 0.00 0.00 46.90 4.08
5338 5459 2.556189 ACCGAATTTTGCTATGTGTGCA 59.444 40.909 0.00 0.00 38.80 4.57
5339 5460 3.171277 GACCGAATTTTGCTATGTGTGC 58.829 45.455 0.00 0.00 0.00 4.57
5340 5461 4.418013 TGACCGAATTTTGCTATGTGTG 57.582 40.909 0.00 0.00 0.00 3.82
5341 5462 4.277174 TGTTGACCGAATTTTGCTATGTGT 59.723 37.500 0.00 0.00 0.00 3.72
5342 5463 4.793071 TGTTGACCGAATTTTGCTATGTG 58.207 39.130 0.00 0.00 0.00 3.21
5605 7712 7.691993 TCTCATCTAAGCCCTACCTAATTTT 57.308 36.000 0.00 0.00 0.00 1.82
5606 7713 7.880265 ATCTCATCTAAGCCCTACCTAATTT 57.120 36.000 0.00 0.00 0.00 1.82
5610 7717 7.691993 AAAAATCTCATCTAAGCCCTACCTA 57.308 36.000 0.00 0.00 0.00 3.08
5637 7744 4.896482 AGTGTTTGGGGTTGTAAATTGCTA 59.104 37.500 0.00 0.00 0.00 3.49
5639 7746 4.055360 GAGTGTTTGGGGTTGTAAATTGC 58.945 43.478 0.00 0.00 0.00 3.56
5641 7748 5.365314 ACATGAGTGTTTGGGGTTGTAAATT 59.635 36.000 0.00 0.00 34.01 1.82
5643 7750 4.282496 ACATGAGTGTTTGGGGTTGTAAA 58.718 39.130 0.00 0.00 34.01 2.01
5644 7751 3.904717 ACATGAGTGTTTGGGGTTGTAA 58.095 40.909 0.00 0.00 34.01 2.41
5646 7753 2.452600 ACATGAGTGTTTGGGGTTGT 57.547 45.000 0.00 0.00 34.01 3.32
5657 7764 3.742369 GGACCAATGCAAAAACATGAGTG 59.258 43.478 0.00 0.00 0.00 3.51
5659 7766 3.328505 GGGACCAATGCAAAAACATGAG 58.671 45.455 0.00 0.00 0.00 2.90
5660 7767 3.399440 GGGACCAATGCAAAAACATGA 57.601 42.857 0.00 0.00 0.00 3.07
5677 7784 1.006813 ATGGGTTGTATTGCTGGGGA 58.993 50.000 0.00 0.00 0.00 4.81
5678 7785 1.864669 AATGGGTTGTATTGCTGGGG 58.135 50.000 0.00 0.00 0.00 4.96
5679 7786 3.181491 CGTTAATGGGTTGTATTGCTGGG 60.181 47.826 0.00 0.00 0.00 4.45
5680 7787 3.181491 CCGTTAATGGGTTGTATTGCTGG 60.181 47.826 5.74 0.00 0.00 4.85
5681 7788 3.442273 ACCGTTAATGGGTTGTATTGCTG 59.558 43.478 18.06 0.00 32.70 4.41
5682 7789 3.692593 GACCGTTAATGGGTTGTATTGCT 59.307 43.478 18.06 0.00 38.07 3.91
5683 7790 3.486209 CGACCGTTAATGGGTTGTATTGC 60.486 47.826 18.06 0.00 38.07 3.56
5684 7791 3.486209 GCGACCGTTAATGGGTTGTATTG 60.486 47.826 18.06 1.13 40.48 1.90
5685 7792 2.679336 GCGACCGTTAATGGGTTGTATT 59.321 45.455 18.06 0.00 40.48 1.89
5687 7794 1.724429 GCGACCGTTAATGGGTTGTA 58.276 50.000 18.06 0.00 40.48 2.41
5688 7795 1.293267 CGCGACCGTTAATGGGTTGT 61.293 55.000 18.06 0.00 40.48 3.32
5689 7796 1.422269 CGCGACCGTTAATGGGTTG 59.578 57.895 18.06 13.64 41.17 3.77
5690 7797 3.879159 CGCGACCGTTAATGGGTT 58.121 55.556 18.06 0.00 38.07 4.11
5705 7812 0.802607 CCAGAGGACGCTCTTTACGC 60.803 60.000 0.00 0.00 0.00 4.42
5706 7813 0.179134 CCCAGAGGACGCTCTTTACG 60.179 60.000 0.00 0.00 33.47 3.18
5707 7814 0.896226 ACCCAGAGGACGCTCTTTAC 59.104 55.000 0.00 0.00 36.73 2.01
5708 7815 1.640917 AACCCAGAGGACGCTCTTTA 58.359 50.000 0.00 0.00 36.73 1.85
5709 7816 1.640917 TAACCCAGAGGACGCTCTTT 58.359 50.000 0.00 0.00 36.73 2.52
5711 7818 1.115467 CATAACCCAGAGGACGCTCT 58.885 55.000 0.00 0.00 36.73 4.09
5712 7819 0.530870 GCATAACCCAGAGGACGCTC 60.531 60.000 0.00 0.00 36.73 5.03
5713 7820 1.522569 GCATAACCCAGAGGACGCT 59.477 57.895 0.00 0.00 36.73 5.07
5714 7821 1.523938 GGCATAACCCAGAGGACGC 60.524 63.158 0.00 0.00 36.73 5.19
5715 7822 0.462047 GTGGCATAACCCAGAGGACG 60.462 60.000 0.00 0.00 37.83 4.79
5718 7825 1.811558 CGATGTGGCATAACCCAGAGG 60.812 57.143 0.00 0.00 37.83 3.69
5720 7827 1.199615 TCGATGTGGCATAACCCAGA 58.800 50.000 0.00 0.00 37.83 3.86
5721 7828 2.260844 ATCGATGTGGCATAACCCAG 57.739 50.000 0.00 0.00 37.83 4.45
5724 7831 4.449068 CAGTAGAATCGATGTGGCATAACC 59.551 45.833 0.00 0.00 39.84 2.85
5726 7833 5.276461 ACAGTAGAATCGATGTGGCATAA 57.724 39.130 0.00 0.00 0.00 1.90
5727 7834 4.262036 GGACAGTAGAATCGATGTGGCATA 60.262 45.833 0.00 0.00 0.00 3.14
5730 7837 2.474816 GGACAGTAGAATCGATGTGGC 58.525 52.381 0.00 0.00 0.00 5.01
5732 7839 2.357952 TCGGGACAGTAGAATCGATGTG 59.642 50.000 0.00 0.00 0.00 3.21
5733 7840 2.651455 TCGGGACAGTAGAATCGATGT 58.349 47.619 0.00 0.00 0.00 3.06
5735 7842 2.623889 CCTTCGGGACAGTAGAATCGAT 59.376 50.000 0.00 0.00 37.25 3.59
5737 7844 2.022195 TCCTTCGGGACAGTAGAATCG 58.978 52.381 0.00 0.00 39.58 3.34
5738 7845 4.467198 TTTCCTTCGGGACAGTAGAATC 57.533 45.455 0.00 0.00 44.98 2.52
5739 7846 4.903045 TTTTCCTTCGGGACAGTAGAAT 57.097 40.909 0.00 0.00 44.98 2.40
5740 7847 4.638304 CTTTTTCCTTCGGGACAGTAGAA 58.362 43.478 0.00 0.00 44.98 2.10
5741 7848 4.267349 CTTTTTCCTTCGGGACAGTAGA 57.733 45.455 0.00 0.00 44.98 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.