Multiple sequence alignment - TraesCS2D01G455900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G455900 chr2D 100.000 4124 0 0 1 4124 564073892 564069769 0.000000e+00 7616.0
1 TraesCS2D01G455900 chr2D 89.456 1214 106 13 1893 3097 564477167 564478367 0.000000e+00 1513.0
2 TraesCS2D01G455900 chr2D 88.675 1245 115 14 1893 3124 564439307 564440538 0.000000e+00 1495.0
3 TraesCS2D01G455900 chr2D 87.167 413 45 6 58 468 641569459 641569053 2.900000e-126 462.0
4 TraesCS2D01G455900 chr2D 87.649 251 31 0 2813 3063 564424883 564425133 4.030000e-75 292.0
5 TraesCS2D01G455900 chr2D 92.929 99 6 1 1503 1601 481595364 481595461 4.300000e-30 143.0
6 TraesCS2D01G455900 chr2D 82.353 119 13 5 3346 3459 648456179 648456064 3.390000e-16 97.1
7 TraesCS2D01G455900 chr2A 93.820 3479 150 20 690 4124 704755895 704752438 0.000000e+00 5173.0
8 TraesCS2D01G455900 chr2A 83.265 1213 165 26 1896 3101 705265526 705266707 0.000000e+00 1081.0
9 TraesCS2D01G455900 chr2A 93.215 619 39 1 2055 2673 705342857 705343472 0.000000e+00 907.0
10 TraesCS2D01G455900 chr2A 82.075 993 145 18 1091 2059 705340910 705341893 0.000000e+00 817.0
11 TraesCS2D01G455900 chr2A 91.139 79 1 5 3522 3598 31756449 31756375 7.290000e-18 102.0
12 TraesCS2D01G455900 chr2B 94.730 3017 120 18 740 3729 675335228 675332224 0.000000e+00 4654.0
13 TraesCS2D01G455900 chr2B 87.781 1244 125 11 1893 3124 675534974 675536202 0.000000e+00 1430.0
14 TraesCS2D01G455900 chr2B 82.605 1213 173 24 1896 3101 675525748 675526929 0.000000e+00 1037.0
15 TraesCS2D01G455900 chr2B 97.015 67 2 0 718 784 675335284 675335218 3.370000e-21 113.0
16 TraesCS2D01G455900 chr2B 89.873 79 7 1 3382 3459 784522946 784522868 2.620000e-17 100.0
17 TraesCS2D01G455900 chr2B 87.500 80 8 2 3382 3459 783874040 783874119 1.580000e-14 91.6
18 TraesCS2D01G455900 chr2B 92.982 57 4 0 660 716 675335524 675335468 2.640000e-12 84.2
19 TraesCS2D01G455900 chr2B 83.158 95 8 4 3516 3603 151646009 151646102 3.420000e-11 80.5
20 TraesCS2D01G455900 chr4B 84.713 1099 130 22 1958 3045 22438650 22437579 0.000000e+00 1064.0
21 TraesCS2D01G455900 chr4B 85.286 1033 126 12 2079 3104 22488508 22487495 0.000000e+00 1042.0
22 TraesCS2D01G455900 chr3D 79.618 785 127 11 1891 2675 152824032 152824783 2.180000e-147 532.0
23 TraesCS2D01G455900 chr3D 84.756 164 20 4 486 647 12822824 12822664 4.270000e-35 159.0
24 TraesCS2D01G455900 chr3D 85.714 147 19 2 501 647 36537001 36536857 1.990000e-33 154.0
25 TraesCS2D01G455900 chr7D 87.152 467 56 2 5 468 5432558 5433023 1.020000e-145 527.0
26 TraesCS2D01G455900 chr7D 90.345 145 13 1 464 607 5434334 5434478 5.440000e-44 189.0
27 TraesCS2D01G455900 chr7D 82.540 189 26 7 463 647 65389446 65389631 4.270000e-35 159.0
28 TraesCS2D01G455900 chr7D 86.957 46 6 0 21 66 33714735 33714780 7.000000e-03 52.8
29 TraesCS2D01G455900 chr5D 92.201 359 24 3 113 468 437450565 437450208 4.760000e-139 505.0
30 TraesCS2D01G455900 chr5D 88.835 412 38 6 60 468 556240808 556240402 2.210000e-137 499.0
31 TraesCS2D01G455900 chr5D 90.110 182 17 1 464 645 283103639 283103819 6.890000e-58 235.0
32 TraesCS2D01G455900 chr5D 95.082 61 3 0 3543 3603 272350882 272350822 3.390000e-16 97.1
33 TraesCS2D01G455900 chr3B 87.469 407 44 4 66 468 692130656 692130253 2.900000e-126 462.0
34 TraesCS2D01G455900 chr4D 86.925 413 45 6 62 468 5248937 5249346 4.860000e-124 455.0
35 TraesCS2D01G455900 chr4D 93.023 86 5 1 3516 3601 67324736 67324820 1.560000e-24 124.0
36 TraesCS2D01G455900 chr1D 86.538 416 46 8 56 468 7699639 7699231 2.260000e-122 449.0
37 TraesCS2D01G455900 chr1D 90.761 184 17 0 464 647 294746457 294746274 3.180000e-61 246.0
38 TraesCS2D01G455900 chr1D 89.677 155 15 1 467 620 75673130 75672976 3.250000e-46 196.0
39 TraesCS2D01G455900 chr1D 82.353 187 33 0 466 652 7697950 7697764 3.300000e-36 163.0
40 TraesCS2D01G455900 chr6D 86.473 414 48 7 60 468 418306796 418307206 8.130000e-122 448.0
41 TraesCS2D01G455900 chr3A 84.188 468 55 14 2 462 94348901 94349356 1.760000e-118 436.0
42 TraesCS2D01G455900 chr6A 91.304 184 14 1 464 647 20141193 20141012 2.460000e-62 250.0
43 TraesCS2D01G455900 chr6A 86.667 90 2 6 3524 3603 111564306 111564395 1.580000e-14 91.6
44 TraesCS2D01G455900 chr4A 96.667 60 2 0 3543 3602 516584727 516584668 2.620000e-17 100.0
45 TraesCS2D01G455900 chr5B 86.905 84 3 4 3523 3598 3483476 3483393 2.040000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G455900 chr2D 564069769 564073892 4123 True 7616.000000 7616 100.0000 1 4124 1 chr2D.!!$R1 4123
1 TraesCS2D01G455900 chr2D 564477167 564478367 1200 False 1513.000000 1513 89.4560 1893 3097 1 chr2D.!!$F4 1204
2 TraesCS2D01G455900 chr2D 564439307 564440538 1231 False 1495.000000 1495 88.6750 1893 3124 1 chr2D.!!$F3 1231
3 TraesCS2D01G455900 chr2A 704752438 704755895 3457 True 5173.000000 5173 93.8200 690 4124 1 chr2A.!!$R2 3434
4 TraesCS2D01G455900 chr2A 705265526 705266707 1181 False 1081.000000 1081 83.2650 1896 3101 1 chr2A.!!$F1 1205
5 TraesCS2D01G455900 chr2A 705340910 705343472 2562 False 862.000000 907 87.6450 1091 2673 2 chr2A.!!$F2 1582
6 TraesCS2D01G455900 chr2B 675332224 675335524 3300 True 1617.066667 4654 94.9090 660 3729 3 chr2B.!!$R2 3069
7 TraesCS2D01G455900 chr2B 675534974 675536202 1228 False 1430.000000 1430 87.7810 1893 3124 1 chr2B.!!$F3 1231
8 TraesCS2D01G455900 chr2B 675525748 675526929 1181 False 1037.000000 1037 82.6050 1896 3101 1 chr2B.!!$F2 1205
9 TraesCS2D01G455900 chr4B 22437579 22438650 1071 True 1064.000000 1064 84.7130 1958 3045 1 chr4B.!!$R1 1087
10 TraesCS2D01G455900 chr4B 22487495 22488508 1013 True 1042.000000 1042 85.2860 2079 3104 1 chr4B.!!$R2 1025
11 TraesCS2D01G455900 chr3D 152824032 152824783 751 False 532.000000 532 79.6180 1891 2675 1 chr3D.!!$F1 784
12 TraesCS2D01G455900 chr7D 5432558 5434478 1920 False 358.000000 527 88.7485 5 607 2 chr7D.!!$F3 602
13 TraesCS2D01G455900 chr1D 7697764 7699639 1875 True 306.000000 449 84.4455 56 652 2 chr1D.!!$R3 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.025001 CGCGCCTCACTTATTTCGTG 59.975 55.0 0.0 0.0 0.0 4.35 F
184 185 0.039617 CGCCGCAATTGTTTCCTCAA 60.040 50.0 7.4 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 2311 0.178068 ACCAGCACGGCGAGAAATAT 59.822 50.000 16.62 0.0 39.03 1.28 R
3186 5714 7.259882 TCAATCAATGTACATTTGATTCTGGC 58.740 34.615 26.31 0.0 32.03 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.277057 GCAAAACGGTATCGCGCC 60.277 61.111 0.00 0.00 40.63 6.53
35 36 2.746803 GCAAAACGGTATCGCGCCT 61.747 57.895 0.00 0.00 40.63 5.52
37 38 1.079681 AAAACGGTATCGCGCCTCA 60.080 52.632 0.00 0.00 40.63 3.86
44 45 2.480845 GGTATCGCGCCTCACTTATTT 58.519 47.619 0.00 0.00 0.00 1.40
45 46 2.475487 GGTATCGCGCCTCACTTATTTC 59.525 50.000 0.00 0.00 0.00 2.17
46 47 1.209128 ATCGCGCCTCACTTATTTCG 58.791 50.000 0.00 0.00 0.00 3.46
47 48 0.108992 TCGCGCCTCACTTATTTCGT 60.109 50.000 0.00 0.00 0.00 3.85
48 49 0.025001 CGCGCCTCACTTATTTCGTG 59.975 55.000 0.00 0.00 0.00 4.35
49 50 0.247695 GCGCCTCACTTATTTCGTGC 60.248 55.000 0.00 0.00 32.54 5.34
50 51 1.075542 CGCCTCACTTATTTCGTGCA 58.924 50.000 0.00 0.00 32.54 4.57
51 52 1.201921 CGCCTCACTTATTTCGTGCAC 60.202 52.381 6.82 6.82 32.54 4.57
52 53 1.130561 GCCTCACTTATTTCGTGCACC 59.869 52.381 12.15 0.00 32.54 5.01
53 54 1.737793 CCTCACTTATTTCGTGCACCC 59.262 52.381 12.15 0.00 32.54 4.61
54 55 1.393539 CTCACTTATTTCGTGCACCCG 59.606 52.381 12.15 0.00 32.54 5.28
55 56 0.179200 CACTTATTTCGTGCACCCGC 60.179 55.000 12.15 0.00 39.24 6.13
56 57 0.321298 ACTTATTTCGTGCACCCGCT 60.321 50.000 12.15 0.00 39.64 5.52
57 58 0.373716 CTTATTTCGTGCACCCGCTC 59.626 55.000 12.15 0.00 39.64 5.03
58 59 1.022451 TTATTTCGTGCACCCGCTCC 61.022 55.000 12.15 0.00 39.64 4.70
59 60 2.862674 TATTTCGTGCACCCGCTCCC 62.863 60.000 12.15 0.00 39.64 4.30
72 73 3.041940 CTCCCGCACGCGACTTTT 61.042 61.111 15.93 0.00 42.83 2.27
79 80 0.385098 GCACGCGACTTTTACCAACC 60.385 55.000 15.93 0.00 0.00 3.77
88 89 1.743394 CTTTTACCAACCGCCAGATCC 59.257 52.381 0.00 0.00 0.00 3.36
129 130 4.778143 CCTCCCCGTTTGCTCCGG 62.778 72.222 0.00 0.00 45.07 5.14
148 149 4.790861 GACCCGACGACGCTTCCC 62.791 72.222 0.64 0.00 38.29 3.97
158 159 4.315941 CGCTTCCCCGGCCCTATC 62.316 72.222 0.00 0.00 0.00 2.08
159 160 3.955044 GCTTCCCCGGCCCTATCC 61.955 72.222 0.00 0.00 0.00 2.59
160 161 2.122369 CTTCCCCGGCCCTATCCT 60.122 66.667 0.00 0.00 0.00 3.24
161 162 2.122547 TTCCCCGGCCCTATCCTC 60.123 66.667 0.00 0.00 0.00 3.71
162 163 4.615795 TCCCCGGCCCTATCCTCG 62.616 72.222 0.00 0.00 0.00 4.63
180 181 3.171911 CGCGCCGCAATTGTTTCC 61.172 61.111 10.75 0.00 0.00 3.13
181 182 2.258286 GCGCCGCAATTGTTTCCT 59.742 55.556 3.15 0.00 0.00 3.36
182 183 1.801512 GCGCCGCAATTGTTTCCTC 60.802 57.895 3.15 0.00 0.00 3.71
183 184 1.578926 CGCCGCAATTGTTTCCTCA 59.421 52.632 7.40 0.00 0.00 3.86
184 185 0.039617 CGCCGCAATTGTTTCCTCAA 60.040 50.000 7.40 0.00 0.00 3.02
185 186 1.418373 GCCGCAATTGTTTCCTCAAC 58.582 50.000 7.40 0.00 35.71 3.18
186 187 1.934849 GCCGCAATTGTTTCCTCAACC 60.935 52.381 7.40 0.00 33.97 3.77
187 188 1.613437 CCGCAATTGTTTCCTCAACCT 59.387 47.619 7.40 0.00 33.97 3.50
188 189 2.351738 CCGCAATTGTTTCCTCAACCTC 60.352 50.000 7.40 0.00 33.97 3.85
189 190 2.351738 CGCAATTGTTTCCTCAACCTCC 60.352 50.000 7.40 0.00 33.97 4.30
190 191 2.893489 GCAATTGTTTCCTCAACCTCCT 59.107 45.455 7.40 0.00 33.97 3.69
191 192 3.057245 GCAATTGTTTCCTCAACCTCCTC 60.057 47.826 7.40 0.00 33.97 3.71
192 193 4.401925 CAATTGTTTCCTCAACCTCCTCT 58.598 43.478 0.00 0.00 33.97 3.69
193 194 3.771577 TTGTTTCCTCAACCTCCTCTC 57.228 47.619 0.00 0.00 33.97 3.20
194 195 1.618837 TGTTTCCTCAACCTCCTCTCG 59.381 52.381 0.00 0.00 33.97 4.04
195 196 1.619332 GTTTCCTCAACCTCCTCTCGT 59.381 52.381 0.00 0.00 0.00 4.18
196 197 1.546961 TTCCTCAACCTCCTCTCGTC 58.453 55.000 0.00 0.00 0.00 4.20
197 198 0.677098 TCCTCAACCTCCTCTCGTCG 60.677 60.000 0.00 0.00 0.00 5.12
198 199 1.137825 CTCAACCTCCTCTCGTCGC 59.862 63.158 0.00 0.00 0.00 5.19
199 200 1.303398 TCAACCTCCTCTCGTCGCT 60.303 57.895 0.00 0.00 0.00 4.93
200 201 1.153939 CAACCTCCTCTCGTCGCTG 60.154 63.158 0.00 0.00 0.00 5.18
201 202 2.995872 AACCTCCTCTCGTCGCTGC 61.996 63.158 0.00 0.00 0.00 5.25
202 203 4.200283 CCTCCTCTCGTCGCTGCC 62.200 72.222 0.00 0.00 0.00 4.85
203 204 4.544689 CTCCTCTCGTCGCTGCCG 62.545 72.222 0.00 0.00 0.00 5.69
205 206 4.838486 CCTCTCGTCGCTGCCGTC 62.838 72.222 0.00 0.00 35.54 4.79
206 207 3.805307 CTCTCGTCGCTGCCGTCT 61.805 66.667 0.00 0.00 35.54 4.18
207 208 3.726631 CTCTCGTCGCTGCCGTCTC 62.727 68.421 0.00 0.00 35.54 3.36
208 209 3.805307 CTCGTCGCTGCCGTCTCT 61.805 66.667 0.00 0.00 35.54 3.10
209 210 3.726631 CTCGTCGCTGCCGTCTCTC 62.727 68.421 0.00 0.00 35.54 3.20
211 212 3.800863 GTCGCTGCCGTCTCTCGA 61.801 66.667 0.00 0.00 42.86 4.04
212 213 3.500642 TCGCTGCCGTCTCTCGAG 61.501 66.667 5.93 5.93 42.86 4.04
218 219 4.872485 CCGTCTCTCGAGCGCGTC 62.872 72.222 10.30 3.06 42.86 5.19
219 220 4.148645 CGTCTCTCGAGCGCGTCA 62.149 66.667 10.30 0.00 42.86 4.35
220 221 2.405594 GTCTCTCGAGCGCGTCAT 59.594 61.111 10.30 0.00 38.98 3.06
221 222 1.226435 GTCTCTCGAGCGCGTCATT 60.226 57.895 10.30 0.00 38.98 2.57
222 223 1.062685 TCTCTCGAGCGCGTCATTC 59.937 57.895 10.30 0.00 38.98 2.67
223 224 1.941734 CTCTCGAGCGCGTCATTCC 60.942 63.158 10.30 0.00 38.98 3.01
224 225 2.103143 CTCGAGCGCGTCATTCCT 59.897 61.111 10.30 0.00 38.98 3.36
225 226 1.941734 CTCGAGCGCGTCATTCCTC 60.942 63.158 10.30 3.28 38.98 3.71
226 227 2.956964 CGAGCGCGTCATTCCTCC 60.957 66.667 8.43 0.00 0.00 4.30
227 228 2.956964 GAGCGCGTCATTCCTCCG 60.957 66.667 8.43 0.00 0.00 4.63
228 229 3.411418 GAGCGCGTCATTCCTCCGA 62.411 63.158 8.43 0.00 0.00 4.55
229 230 3.255379 GCGCGTCATTCCTCCGAC 61.255 66.667 8.43 0.00 0.00 4.79
234 235 3.806591 GTCATTCCTCCGACGAACA 57.193 52.632 0.00 0.00 0.00 3.18
235 236 1.630148 GTCATTCCTCCGACGAACAG 58.370 55.000 0.00 0.00 0.00 3.16
236 237 0.108804 TCATTCCTCCGACGAACAGC 60.109 55.000 0.00 0.00 0.00 4.40
238 239 3.909258 TTCCTCCGACGAACAGCGC 62.909 63.158 0.00 0.00 46.04 5.92
278 279 3.834726 CGCCCACAAGGTGTTCAA 58.165 55.556 0.00 0.00 41.64 2.69
279 280 1.358759 CGCCCACAAGGTGTTCAAC 59.641 57.895 0.00 0.00 41.64 3.18
280 281 1.380403 CGCCCACAAGGTGTTCAACA 61.380 55.000 0.00 0.00 41.64 3.33
281 282 0.820871 GCCCACAAGGTGTTCAACAA 59.179 50.000 0.00 0.00 38.26 2.83
282 283 1.205893 GCCCACAAGGTGTTCAACAAA 59.794 47.619 0.00 0.00 38.26 2.83
283 284 2.354203 GCCCACAAGGTGTTCAACAAAA 60.354 45.455 0.00 0.00 38.26 2.44
284 285 3.258228 CCCACAAGGTGTTCAACAAAAC 58.742 45.455 0.00 0.00 0.00 2.43
285 286 2.920490 CCACAAGGTGTTCAACAAAACG 59.080 45.455 0.00 0.00 31.58 3.60
286 287 2.344142 CACAAGGTGTTCAACAAAACGC 59.656 45.455 0.00 0.00 38.60 4.84
287 288 2.230266 ACAAGGTGTTCAACAAAACGCT 59.770 40.909 0.00 0.00 39.16 5.07
288 289 3.249917 CAAGGTGTTCAACAAAACGCTT 58.750 40.909 0.00 0.00 39.16 4.68
289 290 2.874849 AGGTGTTCAACAAAACGCTTG 58.125 42.857 0.00 0.00 39.16 4.01
290 291 1.323235 GGTGTTCAACAAAACGCTTGC 59.677 47.619 0.00 0.00 39.16 4.01
291 292 1.989165 GTGTTCAACAAAACGCTTGCA 59.011 42.857 0.00 0.00 36.84 4.08
292 293 2.410053 GTGTTCAACAAAACGCTTGCAA 59.590 40.909 0.00 0.00 36.84 4.08
293 294 2.665537 TGTTCAACAAAACGCTTGCAAG 59.334 40.909 22.44 22.44 31.58 4.01
294 295 1.919918 TCAACAAAACGCTTGCAAGG 58.080 45.000 27.10 18.79 0.00 3.61
295 296 1.203523 TCAACAAAACGCTTGCAAGGT 59.796 42.857 27.10 19.42 0.00 3.50
296 297 2.423892 TCAACAAAACGCTTGCAAGGTA 59.576 40.909 27.10 4.78 0.00 3.08
297 298 3.067461 TCAACAAAACGCTTGCAAGGTAT 59.933 39.130 27.10 12.77 0.00 2.73
298 299 3.011949 ACAAAACGCTTGCAAGGTATG 57.988 42.857 27.10 22.62 0.00 2.39
299 300 2.360801 ACAAAACGCTTGCAAGGTATGT 59.639 40.909 27.10 23.12 0.00 2.29
300 301 2.979813 CAAAACGCTTGCAAGGTATGTC 59.020 45.455 27.10 8.86 0.00 3.06
301 302 2.185004 AACGCTTGCAAGGTATGTCT 57.815 45.000 27.10 6.07 0.00 3.41
302 303 2.185004 ACGCTTGCAAGGTATGTCTT 57.815 45.000 27.10 0.72 0.00 3.01
303 304 1.806542 ACGCTTGCAAGGTATGTCTTG 59.193 47.619 27.10 0.00 44.97 3.02
312 313 5.695851 CAAGGTATGTCTTGCTTCAACTT 57.304 39.130 0.00 0.00 37.84 2.66
313 314 5.693814 CAAGGTATGTCTTGCTTCAACTTC 58.306 41.667 0.00 0.00 37.84 3.01
314 315 4.973168 AGGTATGTCTTGCTTCAACTTCA 58.027 39.130 0.00 0.00 0.00 3.02
315 316 5.564550 AGGTATGTCTTGCTTCAACTTCAT 58.435 37.500 0.00 0.00 0.00 2.57
316 317 6.711277 AGGTATGTCTTGCTTCAACTTCATA 58.289 36.000 0.00 0.00 0.00 2.15
317 318 7.341805 AGGTATGTCTTGCTTCAACTTCATAT 58.658 34.615 0.00 0.00 0.00 1.78
318 319 7.831193 AGGTATGTCTTGCTTCAACTTCATATT 59.169 33.333 0.00 0.00 0.00 1.28
319 320 8.462016 GGTATGTCTTGCTTCAACTTCATATTT 58.538 33.333 0.00 0.00 0.00 1.40
320 321 9.846248 GTATGTCTTGCTTCAACTTCATATTTT 57.154 29.630 0.00 0.00 0.00 1.82
321 322 8.752766 ATGTCTTGCTTCAACTTCATATTTTG 57.247 30.769 0.00 0.00 0.00 2.44
322 323 7.715657 TGTCTTGCTTCAACTTCATATTTTGT 58.284 30.769 0.00 0.00 0.00 2.83
323 324 8.845227 TGTCTTGCTTCAACTTCATATTTTGTA 58.155 29.630 0.00 0.00 0.00 2.41
324 325 9.334693 GTCTTGCTTCAACTTCATATTTTGTAG 57.665 33.333 0.00 0.00 0.00 2.74
325 326 9.283768 TCTTGCTTCAACTTCATATTTTGTAGA 57.716 29.630 0.00 0.00 0.00 2.59
327 328 9.844790 TTGCTTCAACTTCATATTTTGTAGATG 57.155 29.630 0.00 0.00 30.06 2.90
328 329 9.230122 TGCTTCAACTTCATATTTTGTAGATGA 57.770 29.630 0.00 0.00 34.30 2.92
337 338 9.585099 TTCATATTTTGTAGATGAATTTGGTGC 57.415 29.630 0.00 0.00 35.26 5.01
338 339 8.747471 TCATATTTTGTAGATGAATTTGGTGCA 58.253 29.630 0.00 0.00 0.00 4.57
339 340 9.537192 CATATTTTGTAGATGAATTTGGTGCAT 57.463 29.630 0.00 0.00 0.00 3.96
340 341 7.837202 ATTTTGTAGATGAATTTGGTGCATG 57.163 32.000 0.00 0.00 0.00 4.06
341 342 5.981088 TTGTAGATGAATTTGGTGCATGT 57.019 34.783 0.00 0.00 0.00 3.21
342 343 5.981088 TGTAGATGAATTTGGTGCATGTT 57.019 34.783 0.00 0.00 0.00 2.71
343 344 5.712004 TGTAGATGAATTTGGTGCATGTTG 58.288 37.500 0.00 0.00 0.00 3.33
344 345 4.877378 AGATGAATTTGGTGCATGTTGT 57.123 36.364 0.00 0.00 0.00 3.32
345 346 5.217978 AGATGAATTTGGTGCATGTTGTT 57.782 34.783 0.00 0.00 0.00 2.83
346 347 5.613329 AGATGAATTTGGTGCATGTTGTTT 58.387 33.333 0.00 0.00 0.00 2.83
347 348 5.467399 AGATGAATTTGGTGCATGTTGTTTG 59.533 36.000 0.00 0.00 0.00 2.93
348 349 4.511527 TGAATTTGGTGCATGTTGTTTGT 58.488 34.783 0.00 0.00 0.00 2.83
349 350 5.664457 TGAATTTGGTGCATGTTGTTTGTA 58.336 33.333 0.00 0.00 0.00 2.41
350 351 5.752472 TGAATTTGGTGCATGTTGTTTGTAG 59.248 36.000 0.00 0.00 0.00 2.74
351 352 4.727507 TTTGGTGCATGTTGTTTGTAGT 57.272 36.364 0.00 0.00 0.00 2.73
352 353 4.727507 TTGGTGCATGTTGTTTGTAGTT 57.272 36.364 0.00 0.00 0.00 2.24
353 354 4.727507 TGGTGCATGTTGTTTGTAGTTT 57.272 36.364 0.00 0.00 0.00 2.66
354 355 5.078411 TGGTGCATGTTGTTTGTAGTTTT 57.922 34.783 0.00 0.00 0.00 2.43
355 356 6.208988 TGGTGCATGTTGTTTGTAGTTTTA 57.791 33.333 0.00 0.00 0.00 1.52
356 357 6.810911 TGGTGCATGTTGTTTGTAGTTTTAT 58.189 32.000 0.00 0.00 0.00 1.40
357 358 7.941919 TGGTGCATGTTGTTTGTAGTTTTATA 58.058 30.769 0.00 0.00 0.00 0.98
358 359 8.580720 TGGTGCATGTTGTTTGTAGTTTTATAT 58.419 29.630 0.00 0.00 0.00 0.86
412 413 9.859427 TGAGTTCATCATATGATTTTTCAAACC 57.141 29.630 15.74 8.14 39.39 3.27
413 414 9.859427 GAGTTCATCATATGATTTTTCAAACCA 57.141 29.630 15.74 0.00 39.39 3.67
442 443 7.408756 TTTGATATTCAAAAGGAGGACCATG 57.591 36.000 0.37 0.00 42.72 3.66
443 444 4.889409 TGATATTCAAAAGGAGGACCATGC 59.111 41.667 0.00 0.00 38.94 4.06
444 445 2.673775 TTCAAAAGGAGGACCATGCA 57.326 45.000 0.00 0.00 38.94 3.96
445 446 2.673775 TCAAAAGGAGGACCATGCAA 57.326 45.000 0.00 0.00 38.94 4.08
446 447 3.173953 TCAAAAGGAGGACCATGCAAT 57.826 42.857 0.00 0.00 38.94 3.56
447 448 2.827322 TCAAAAGGAGGACCATGCAATG 59.173 45.455 0.00 0.00 46.21 2.82
464 465 5.872963 TGCAATGATCCTAGATATGCAAGT 58.127 37.500 0.00 0.00 39.15 3.16
465 466 5.936372 TGCAATGATCCTAGATATGCAAGTC 59.064 40.000 0.00 0.00 39.15 3.01
466 467 5.936372 GCAATGATCCTAGATATGCAAGTCA 59.064 40.000 0.00 0.00 32.80 3.41
467 468 6.429078 GCAATGATCCTAGATATGCAAGTCAA 59.571 38.462 0.00 0.00 32.80 3.18
468 469 7.040892 GCAATGATCCTAGATATGCAAGTCAAA 60.041 37.037 0.00 0.00 32.80 2.69
469 470 9.011095 CAATGATCCTAGATATGCAAGTCAAAT 57.989 33.333 0.00 0.00 0.00 2.32
470 471 7.974482 TGATCCTAGATATGCAAGTCAAATG 57.026 36.000 0.00 0.00 0.00 2.32
471 472 7.512130 TGATCCTAGATATGCAAGTCAAATGT 58.488 34.615 0.00 0.00 0.00 2.71
472 473 7.994911 TGATCCTAGATATGCAAGTCAAATGTT 59.005 33.333 0.00 0.00 0.00 2.71
473 474 7.558161 TCCTAGATATGCAAGTCAAATGTTG 57.442 36.000 0.00 0.00 0.00 3.33
474 475 7.112122 TCCTAGATATGCAAGTCAAATGTTGT 58.888 34.615 0.00 0.00 0.00 3.32
475 476 7.611467 TCCTAGATATGCAAGTCAAATGTTGTT 59.389 33.333 0.00 0.00 0.00 2.83
476 477 8.246180 CCTAGATATGCAAGTCAAATGTTGTTT 58.754 33.333 0.00 0.00 0.00 2.83
477 478 7.878477 AGATATGCAAGTCAAATGTTGTTTG 57.122 32.000 0.00 0.00 33.07 2.93
478 479 7.436118 AGATATGCAAGTCAAATGTTGTTTGT 58.564 30.769 0.00 0.00 32.76 2.83
479 480 5.721876 ATGCAAGTCAAATGTTGTTTGTG 57.278 34.783 0.00 0.00 32.76 3.33
480 481 3.370366 TGCAAGTCAAATGTTGTTTGTGC 59.630 39.130 7.31 7.31 32.76 4.57
481 482 3.618150 GCAAGTCAAATGTTGTTTGTGCT 59.382 39.130 7.10 2.75 32.76 4.40
482 483 4.492895 GCAAGTCAAATGTTGTTTGTGCTG 60.493 41.667 7.10 2.75 32.76 4.41
483 484 3.784338 AGTCAAATGTTGTTTGTGCTGG 58.216 40.909 1.05 0.00 0.00 4.85
484 485 2.865551 GTCAAATGTTGTTTGTGCTGGG 59.134 45.455 1.05 0.00 0.00 4.45
485 486 1.598601 CAAATGTTGTTTGTGCTGGGC 59.401 47.619 0.00 0.00 0.00 5.36
486 487 0.249405 AATGTTGTTTGTGCTGGGCG 60.249 50.000 0.00 0.00 0.00 6.13
487 488 2.658268 GTTGTTTGTGCTGGGCGC 60.658 61.111 0.00 0.00 39.75 6.53
488 489 4.263209 TTGTTTGTGCTGGGCGCG 62.263 61.111 0.00 0.00 42.51 6.86
490 491 4.389576 GTTTGTGCTGGGCGCGAG 62.390 66.667 12.10 0.00 42.51 5.03
505 506 3.413687 CGCGAGCGTTGTATATTTACC 57.586 47.619 0.00 0.00 34.35 2.85
506 507 2.160195 CGCGAGCGTTGTATATTTACCG 60.160 50.000 0.00 0.00 34.35 4.02
507 508 2.409371 GCGAGCGTTGTATATTTACCGC 60.409 50.000 8.24 8.24 38.49 5.68
508 509 2.160195 CGAGCGTTGTATATTTACCGCG 60.160 50.000 0.00 0.00 41.17 6.46
509 510 1.523934 AGCGTTGTATATTTACCGCGC 59.476 47.619 17.17 17.17 43.99 6.86
510 511 1.397567 GCGTTGTATATTTACCGCGCC 60.398 52.381 0.00 0.00 40.94 6.53
511 512 2.129607 CGTTGTATATTTACCGCGCCT 58.870 47.619 0.00 0.00 0.00 5.52
512 513 2.097104 CGTTGTATATTTACCGCGCCTG 60.097 50.000 0.00 0.00 0.00 4.85
513 514 2.867975 GTTGTATATTTACCGCGCCTGT 59.132 45.455 0.00 1.35 0.00 4.00
514 515 3.182341 TGTATATTTACCGCGCCTGTT 57.818 42.857 0.00 0.00 0.00 3.16
515 516 2.867368 TGTATATTTACCGCGCCTGTTG 59.133 45.455 0.00 0.00 0.00 3.33
516 517 1.305201 ATATTTACCGCGCCTGTTGG 58.695 50.000 0.00 0.00 0.00 3.77
517 518 0.249676 TATTTACCGCGCCTGTTGGA 59.750 50.000 0.00 0.00 34.57 3.53
518 519 1.024579 ATTTACCGCGCCTGTTGGAG 61.025 55.000 0.00 0.00 36.16 3.86
524 525 3.123620 CGCCTGTTGGAGCTGCTC 61.124 66.667 21.17 21.17 34.57 4.26
525 526 3.123620 GCCTGTTGGAGCTGCTCG 61.124 66.667 22.25 9.31 34.57 5.03
526 527 2.345244 CCTGTTGGAGCTGCTCGT 59.655 61.111 22.25 0.00 34.57 4.18
527 528 2.031516 CCTGTTGGAGCTGCTCGTG 61.032 63.158 22.25 10.39 34.57 4.35
528 529 2.666190 TGTTGGAGCTGCTCGTGC 60.666 61.111 22.25 14.53 40.20 5.34
529 530 3.782244 GTTGGAGCTGCTCGTGCG 61.782 66.667 22.25 1.25 43.34 5.34
536 537 3.553765 CTGCTCGTGCGCGCAATA 61.554 61.111 38.24 25.12 43.34 1.90
537 538 2.874694 CTGCTCGTGCGCGCAATAT 61.875 57.895 38.24 0.00 43.34 1.28
538 539 2.324477 GCTCGTGCGCGCAATATT 59.676 55.556 38.24 0.00 38.14 1.28
539 540 1.297598 GCTCGTGCGCGCAATATTT 60.298 52.632 38.24 0.00 38.14 1.40
540 541 0.861450 GCTCGTGCGCGCAATATTTT 60.861 50.000 38.24 0.00 38.14 1.82
541 542 0.833264 CTCGTGCGCGCAATATTTTG 59.167 50.000 38.24 18.58 38.14 2.44
550 551 2.580661 CAATATTTTGCAGCGGCCG 58.419 52.632 24.05 24.05 40.13 6.13
551 552 1.226945 AATATTTTGCAGCGGCCGC 60.227 52.632 42.34 42.34 40.13 6.53
584 585 2.540953 GCTGCGCGCAAAAAGTTG 59.459 55.556 35.50 21.89 38.92 3.16
595 596 3.952174 CAAAAAGTTGCTATTTCGGCG 57.048 42.857 0.00 0.00 0.00 6.46
596 597 1.977188 AAAAGTTGCTATTTCGGCGC 58.023 45.000 0.00 0.00 0.00 6.53
597 598 1.165270 AAAGTTGCTATTTCGGCGCT 58.835 45.000 7.64 0.00 0.00 5.92
598 599 0.447801 AAGTTGCTATTTCGGCGCTG 59.552 50.000 10.86 10.86 0.00 5.18
599 600 0.673644 AGTTGCTATTTCGGCGCTGT 60.674 50.000 17.37 0.00 0.00 4.40
600 601 1.003851 GTTGCTATTTCGGCGCTGTA 58.996 50.000 17.37 3.07 0.00 2.74
601 602 1.395608 GTTGCTATTTCGGCGCTGTAA 59.604 47.619 17.37 13.97 0.00 2.41
602 603 1.728068 TGCTATTTCGGCGCTGTAAA 58.272 45.000 17.37 15.11 0.00 2.01
603 604 2.077627 TGCTATTTCGGCGCTGTAAAA 58.922 42.857 17.37 10.87 0.00 1.52
604 605 2.095213 TGCTATTTCGGCGCTGTAAAAG 59.905 45.455 17.37 11.06 0.00 2.27
605 606 2.095372 GCTATTTCGGCGCTGTAAAAGT 59.905 45.455 17.37 2.69 0.00 2.66
606 607 3.425758 GCTATTTCGGCGCTGTAAAAGTT 60.426 43.478 17.37 0.18 0.00 2.66
607 608 4.201744 GCTATTTCGGCGCTGTAAAAGTTA 60.202 41.667 17.37 1.45 0.00 2.24
608 609 4.957759 ATTTCGGCGCTGTAAAAGTTAT 57.042 36.364 17.37 0.00 0.00 1.89
609 610 4.752661 TTTCGGCGCTGTAAAAGTTATT 57.247 36.364 17.37 0.00 0.00 1.40
610 611 4.752661 TTCGGCGCTGTAAAAGTTATTT 57.247 36.364 17.37 0.00 0.00 1.40
611 612 4.752661 TCGGCGCTGTAAAAGTTATTTT 57.247 36.364 17.37 0.00 41.48 1.82
612 613 5.859521 TCGGCGCTGTAAAAGTTATTTTA 57.140 34.783 17.37 0.00 39.36 1.52
613 614 5.860641 TCGGCGCTGTAAAAGTTATTTTAG 58.139 37.500 17.37 0.00 40.62 1.85
614 615 4.494410 CGGCGCTGTAAAAGTTATTTTAGC 59.506 41.667 8.45 0.00 40.62 3.09
617 618 5.585194 GCTGTAAAAGTTATTTTAGCGCG 57.415 39.130 0.00 0.00 40.62 6.86
618 619 4.028750 GCTGTAAAAGTTATTTTAGCGCGC 60.029 41.667 26.66 26.66 40.62 6.86
619 620 4.405196 TGTAAAAGTTATTTTAGCGCGCC 58.595 39.130 30.33 9.85 40.62 6.53
620 621 2.168201 AAAGTTATTTTAGCGCGCCG 57.832 45.000 30.33 0.00 0.00 6.46
621 622 3.290397 AAAAGTTATTTTAGCGCGCCGC 61.290 45.455 30.33 14.88 41.05 6.53
639 640 4.389576 GCGTTGCGTGCCTCTTGG 62.390 66.667 0.00 0.00 0.00 3.61
640 641 2.664851 CGTTGCGTGCCTCTTGGA 60.665 61.111 0.00 0.00 34.57 3.53
641 642 2.671177 CGTTGCGTGCCTCTTGGAG 61.671 63.158 0.00 0.00 34.57 3.86
642 643 1.301716 GTTGCGTGCCTCTTGGAGA 60.302 57.895 0.00 0.00 34.57 3.71
643 644 0.674895 GTTGCGTGCCTCTTGGAGAT 60.675 55.000 0.00 0.00 34.57 2.75
644 645 0.674581 TTGCGTGCCTCTTGGAGATG 60.675 55.000 0.00 0.00 34.57 2.90
645 646 2.467826 GCGTGCCTCTTGGAGATGC 61.468 63.158 0.00 0.00 36.57 3.91
646 647 1.220206 CGTGCCTCTTGGAGATGCT 59.780 57.895 6.74 0.00 36.90 3.79
647 648 0.461548 CGTGCCTCTTGGAGATGCTA 59.538 55.000 6.74 0.00 36.90 3.49
648 649 1.069823 CGTGCCTCTTGGAGATGCTAT 59.930 52.381 6.74 0.00 36.90 2.97
649 650 2.492012 GTGCCTCTTGGAGATGCTATG 58.508 52.381 6.74 0.00 36.90 2.23
650 651 2.103771 GTGCCTCTTGGAGATGCTATGA 59.896 50.000 6.74 0.00 36.90 2.15
651 652 2.103771 TGCCTCTTGGAGATGCTATGAC 59.896 50.000 6.74 0.00 36.90 3.06
652 653 2.103771 GCCTCTTGGAGATGCTATGACA 59.896 50.000 0.00 0.00 33.80 3.58
653 654 3.432749 GCCTCTTGGAGATGCTATGACAA 60.433 47.826 0.00 0.00 33.80 3.18
654 655 4.378774 CCTCTTGGAGATGCTATGACAAG 58.621 47.826 0.00 0.00 37.31 3.16
655 656 4.100653 CCTCTTGGAGATGCTATGACAAGA 59.899 45.833 0.00 0.00 41.16 3.02
656 657 5.221682 CCTCTTGGAGATGCTATGACAAGAT 60.222 44.000 11.92 0.00 42.10 2.40
657 658 5.608449 TCTTGGAGATGCTATGACAAGATG 58.392 41.667 0.00 0.00 39.29 2.90
658 659 5.364735 TCTTGGAGATGCTATGACAAGATGA 59.635 40.000 0.00 0.00 39.29 2.92
687 688 3.185246 ACTCATTGATCCCACGACATC 57.815 47.619 0.00 0.00 0.00 3.06
704 705 4.090930 CGACATCGTAAATTTCCGTCAAGT 59.909 41.667 2.98 0.00 34.11 3.16
716 717 4.675976 TCCGTCAAGTTTCCACTTCTAA 57.324 40.909 0.00 0.00 41.69 2.10
787 1004 0.179048 TTCCGCTCCATCATCGCAAT 60.179 50.000 0.00 0.00 0.00 3.56
799 1016 4.668576 TCATCGCAATTCAAAGTCTCAC 57.331 40.909 0.00 0.00 0.00 3.51
1012 1234 1.341285 CCCATCCCATGTTGCAGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
1101 1332 2.510238 GGCAGCACCTGTAGCTCG 60.510 66.667 0.00 0.00 41.14 5.03
1427 1676 3.353836 CGGCCTGACCAACAACCG 61.354 66.667 0.00 0.00 40.25 4.44
1488 1737 2.048127 GACACGCGGAGGAGCTTT 60.048 61.111 12.47 0.00 34.40 3.51
1498 1747 2.436824 GGAGCTTTGAGGCCGACC 60.437 66.667 0.00 0.00 0.00 4.79
1681 2152 0.179145 CTTCACCTACGCCTGGTACG 60.179 60.000 0.00 0.00 35.80 3.67
1708 2179 2.184830 TCGCGGTATCTCCTGGACG 61.185 63.158 6.13 0.00 0.00 4.79
1746 2217 2.263540 GCTTCCACCGGCGAGTTA 59.736 61.111 9.30 0.00 0.00 2.24
1840 2311 2.347490 GGTTGAGGCGCCAGAAGA 59.653 61.111 31.54 6.55 0.00 2.87
2795 5318 1.139654 CATCGTGGACTGGATGTGGAT 59.860 52.381 0.00 0.00 36.23 3.41
3186 5714 6.038714 GCCTTTCCTGTTGTTATCTTAGATGG 59.961 42.308 4.78 0.00 0.00 3.51
3209 5737 6.154877 TGGCCAGAATCAAATGTACATTGATT 59.845 34.615 27.72 27.72 34.45 2.57
3230 5758 8.498054 TGATTGATGATTCTTTCTAGTTCACC 57.502 34.615 0.00 0.00 0.00 4.02
3317 5849 3.261897 AGAGATGGACATTTTGAGACGGT 59.738 43.478 0.00 0.00 0.00 4.83
3329 5861 2.172679 TGAGACGGTGGTAGTATTGCA 58.827 47.619 0.00 0.00 0.00 4.08
3333 5865 2.014128 ACGGTGGTAGTATTGCATTGC 58.986 47.619 0.46 0.46 0.00 3.56
3364 5903 7.446106 AATGATTCCTGGGTGTATACACTTA 57.554 36.000 29.89 19.66 45.73 2.24
3607 6165 3.374058 CCCATAGACCAAACGTTCATGTC 59.626 47.826 0.00 8.87 0.00 3.06
3638 6196 5.938125 TGTAGTCTTTATTGTTCCTGCCTTC 59.062 40.000 0.00 0.00 0.00 3.46
3696 6254 3.096461 CTGAAAATGATTTCTGCGCGAG 58.904 45.455 12.10 4.52 44.32 5.03
3706 6264 1.032794 TCTGCGCGAGTCAATATCCT 58.967 50.000 12.10 0.00 0.00 3.24
3713 6271 2.223923 GCGAGTCAATATCCTGAGCACT 60.224 50.000 0.00 0.00 0.00 4.40
3737 6295 1.880340 GGAGACGAAGCTGATGCGG 60.880 63.158 0.00 0.00 45.42 5.69
3776 6335 3.597728 GGCGAGGCGAGTAGGGAG 61.598 72.222 0.00 0.00 0.00 4.30
3777 6336 4.273257 GCGAGGCGAGTAGGGAGC 62.273 72.222 0.00 0.00 0.00 4.70
3780 6339 2.044252 AGGCGAGTAGGGAGCGAA 60.044 61.111 0.00 0.00 0.00 4.70
3783 6342 2.707849 GCGAGTAGGGAGCGAACCA 61.708 63.158 0.00 0.00 0.00 3.67
3785 6344 0.460311 CGAGTAGGGAGCGAACCAAT 59.540 55.000 0.00 0.00 0.00 3.16
3803 6362 2.819608 CAATAAGGGGACAACACCACTG 59.180 50.000 0.00 0.00 43.63 3.66
3809 6368 4.497984 ACAACACCACTGGCCGCA 62.498 61.111 0.00 0.00 0.00 5.69
3845 6404 5.029807 AGGGAACTCTAAAGCTTGATAGC 57.970 43.478 0.00 0.00 42.56 2.97
3854 6413 3.165606 GCTTGATAGCAGCAGGTGT 57.834 52.632 0.66 0.00 46.95 4.16
3867 6426 2.689034 GGTGTGGGGGAGAGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
3873 6432 2.454941 GGGGAGAGGGAGGGTTCA 59.545 66.667 0.00 0.00 0.00 3.18
3875 6434 1.057275 GGGGAGAGGGAGGGTTCATC 61.057 65.000 0.00 0.00 0.00 2.92
3877 6436 0.397254 GGAGAGGGAGGGTTCATCGA 60.397 60.000 0.00 0.00 0.00 3.59
3878 6437 0.747852 GAGAGGGAGGGTTCATCGAC 59.252 60.000 0.00 0.00 0.00 4.20
3891 6450 3.357919 TCGACGCCGAAGAAGGAA 58.642 55.556 0.00 0.00 42.51 3.36
3905 6464 5.627968 CGAAGAAGGAAGGCTTAGAAGGAAT 60.628 44.000 0.00 0.00 0.00 3.01
3912 6471 3.858135 AGGCTTAGAAGGAATATCGGGA 58.142 45.455 0.00 0.00 0.00 5.14
3959 6518 1.189524 TTAGGCTAGTGGTGGCACGT 61.190 55.000 12.17 1.07 0.00 4.49
3960 6519 1.884075 TAGGCTAGTGGTGGCACGTG 61.884 60.000 12.28 12.28 0.00 4.49
3975 6534 0.955178 ACGTGGATCGCTGATAGAGG 59.045 55.000 0.00 0.00 44.19 3.69
3989 6548 5.988561 GCTGATAGAGGAATAGGAACACAAG 59.011 44.000 0.00 0.00 0.00 3.16
3993 6552 4.822026 AGAGGAATAGGAACACAAGAACG 58.178 43.478 0.00 0.00 0.00 3.95
3994 6553 3.933332 GAGGAATAGGAACACAAGAACGG 59.067 47.826 0.00 0.00 0.00 4.44
3997 6556 2.163818 TAGGAACACAAGAACGGCTG 57.836 50.000 0.00 0.00 0.00 4.85
4026 6585 8.425703 ACTCTGGGAAGATAGAATAAACTAAGC 58.574 37.037 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.188100 CTCCGCGCGCTGAATCAA 61.188 61.111 30.48 5.00 0.00 2.57
26 27 2.223641 ACGAAATAAGTGAGGCGCGATA 60.224 45.455 12.10 0.00 0.00 2.92
30 31 0.247695 GCACGAAATAAGTGAGGCGC 60.248 55.000 0.00 0.00 41.83 6.53
34 35 1.393539 CGGGTGCACGAAATAAGTGAG 59.606 52.381 11.45 0.00 41.83 3.51
35 36 1.434555 CGGGTGCACGAAATAAGTGA 58.565 50.000 11.45 0.00 41.83 3.41
37 38 0.321298 AGCGGGTGCACGAAATAAGT 60.321 50.000 11.45 0.00 46.23 2.24
55 56 1.735198 TAAAAGTCGCGTGCGGGAG 60.735 57.895 14.89 0.00 40.25 4.30
56 57 2.023223 GTAAAAGTCGCGTGCGGGA 61.023 57.895 14.89 8.57 40.25 5.14
57 58 2.472934 GTAAAAGTCGCGTGCGGG 59.527 61.111 14.89 6.04 40.25 6.13
58 59 1.833434 TTGGTAAAAGTCGCGTGCGG 61.833 55.000 14.89 0.00 40.25 5.69
59 60 0.720173 GTTGGTAAAAGTCGCGTGCG 60.720 55.000 5.77 8.14 41.35 5.34
60 61 0.385098 GGTTGGTAAAAGTCGCGTGC 60.385 55.000 5.77 0.00 0.00 5.34
61 62 0.111001 CGGTTGGTAAAAGTCGCGTG 60.111 55.000 5.77 0.00 0.00 5.34
62 63 1.834458 GCGGTTGGTAAAAGTCGCGT 61.834 55.000 5.77 0.00 34.08 6.01
63 64 1.154543 GCGGTTGGTAAAAGTCGCG 60.155 57.895 0.00 0.00 34.08 5.87
64 65 1.208358 GGCGGTTGGTAAAAGTCGC 59.792 57.895 0.00 0.00 42.02 5.19
65 66 0.515564 CTGGCGGTTGGTAAAAGTCG 59.484 55.000 0.00 0.00 0.00 4.18
66 67 1.886886 TCTGGCGGTTGGTAAAAGTC 58.113 50.000 0.00 0.00 0.00 3.01
71 72 0.251916 CTGGATCTGGCGGTTGGTAA 59.748 55.000 0.00 0.00 0.00 2.85
72 73 1.622607 CCTGGATCTGGCGGTTGGTA 61.623 60.000 0.00 0.00 0.00 3.25
131 132 4.790861 GGGAAGCGTCGTCGGGTC 62.791 72.222 3.90 0.00 37.56 4.46
141 142 4.315941 GATAGGGCCGGGGAAGCG 62.316 72.222 2.18 0.00 0.00 4.68
142 143 3.955044 GGATAGGGCCGGGGAAGC 61.955 72.222 2.18 0.00 0.00 3.86
143 144 2.122369 AGGATAGGGCCGGGGAAG 60.122 66.667 2.18 0.00 0.00 3.46
144 145 2.122547 GAGGATAGGGCCGGGGAA 60.123 66.667 2.18 0.00 0.00 3.97
145 146 4.615795 CGAGGATAGGGCCGGGGA 62.616 72.222 2.18 0.00 0.00 4.81
163 164 3.171911 GGAAACAATTGCGGCGCG 61.172 61.111 28.09 15.31 0.00 6.86
164 165 1.801512 GAGGAAACAATTGCGGCGC 60.802 57.895 27.44 27.44 31.21 6.53
165 166 0.039617 TTGAGGAAACAATTGCGGCG 60.040 50.000 5.05 0.51 31.21 6.46
166 167 1.418373 GTTGAGGAAACAATTGCGGC 58.582 50.000 5.05 0.00 38.75 6.53
167 168 1.613437 AGGTTGAGGAAACAATTGCGG 59.387 47.619 5.05 0.00 40.86 5.69
168 169 2.351738 GGAGGTTGAGGAAACAATTGCG 60.352 50.000 5.05 0.00 40.86 4.85
169 170 2.893489 AGGAGGTTGAGGAAACAATTGC 59.107 45.455 5.05 0.00 40.86 3.56
170 171 4.401925 AGAGGAGGTTGAGGAAACAATTG 58.598 43.478 3.24 3.24 40.86 2.32
171 172 4.657013 GAGAGGAGGTTGAGGAAACAATT 58.343 43.478 0.00 0.00 40.86 2.32
172 173 3.307059 CGAGAGGAGGTTGAGGAAACAAT 60.307 47.826 0.00 0.00 40.86 2.71
173 174 2.037251 CGAGAGGAGGTTGAGGAAACAA 59.963 50.000 0.00 0.00 40.86 2.83
174 175 1.618837 CGAGAGGAGGTTGAGGAAACA 59.381 52.381 0.00 0.00 40.86 2.83
175 176 1.619332 ACGAGAGGAGGTTGAGGAAAC 59.381 52.381 0.00 0.00 38.12 2.78
176 177 1.893801 GACGAGAGGAGGTTGAGGAAA 59.106 52.381 0.00 0.00 0.00 3.13
177 178 1.546961 GACGAGAGGAGGTTGAGGAA 58.453 55.000 0.00 0.00 0.00 3.36
178 179 0.677098 CGACGAGAGGAGGTTGAGGA 60.677 60.000 0.00 0.00 0.00 3.71
179 180 1.803943 CGACGAGAGGAGGTTGAGG 59.196 63.158 0.00 0.00 0.00 3.86
180 181 1.137825 GCGACGAGAGGAGGTTGAG 59.862 63.158 0.00 0.00 0.00 3.02
181 182 1.303398 AGCGACGAGAGGAGGTTGA 60.303 57.895 0.00 0.00 0.00 3.18
182 183 1.153939 CAGCGACGAGAGGAGGTTG 60.154 63.158 0.00 0.00 0.00 3.77
183 184 2.995872 GCAGCGACGAGAGGAGGTT 61.996 63.158 0.00 0.00 0.00 3.50
184 185 3.444805 GCAGCGACGAGAGGAGGT 61.445 66.667 0.00 0.00 0.00 3.85
185 186 4.200283 GGCAGCGACGAGAGGAGG 62.200 72.222 0.00 0.00 0.00 4.30
186 187 4.544689 CGGCAGCGACGAGAGGAG 62.545 72.222 0.00 0.00 35.20 3.69
188 189 4.838486 GACGGCAGCGACGAGAGG 62.838 72.222 10.68 0.00 35.20 3.69
189 190 3.726631 GAGACGGCAGCGACGAGAG 62.727 68.421 10.68 0.00 35.20 3.20
190 191 3.800863 GAGACGGCAGCGACGAGA 61.801 66.667 10.68 0.00 35.20 4.04
191 192 3.726631 GAGAGACGGCAGCGACGAG 62.727 68.421 10.68 0.00 35.20 4.18
192 193 3.800863 GAGAGACGGCAGCGACGA 61.801 66.667 10.68 0.00 35.20 4.20
194 195 3.726631 CTCGAGAGACGGCAGCGAC 62.727 68.421 6.58 0.00 42.82 5.19
195 196 3.500642 CTCGAGAGACGGCAGCGA 61.501 66.667 6.58 0.00 42.82 4.93
201 202 4.872485 GACGCGCTCGAGAGACGG 62.872 72.222 26.24 15.60 42.82 4.79
202 203 2.904747 AATGACGCGCTCGAGAGACG 62.905 60.000 21.07 22.35 44.09 4.18
203 204 1.197368 GAATGACGCGCTCGAGAGAC 61.197 60.000 21.07 10.14 39.41 3.36
204 205 1.062685 GAATGACGCGCTCGAGAGA 59.937 57.895 21.07 0.00 39.41 3.10
205 206 1.941734 GGAATGACGCGCTCGAGAG 60.942 63.158 18.75 15.34 39.41 3.20
206 207 2.102357 GGAATGACGCGCTCGAGA 59.898 61.111 18.75 0.00 39.41 4.04
207 208 1.941734 GAGGAATGACGCGCTCGAG 60.942 63.158 5.73 8.45 39.41 4.04
208 209 2.102357 GAGGAATGACGCGCTCGA 59.898 61.111 5.73 0.00 39.41 4.04
209 210 2.956964 GGAGGAATGACGCGCTCG 60.957 66.667 5.73 0.00 42.43 5.03
210 211 2.956964 CGGAGGAATGACGCGCTC 60.957 66.667 5.73 2.86 0.00 5.03
211 212 3.449227 TCGGAGGAATGACGCGCT 61.449 61.111 5.73 0.00 0.00 5.92
212 213 3.255379 GTCGGAGGAATGACGCGC 61.255 66.667 5.73 0.00 0.00 6.86
216 217 1.630148 CTGTTCGTCGGAGGAATGAC 58.370 55.000 15.30 5.43 0.00 3.06
217 218 0.108804 GCTGTTCGTCGGAGGAATGA 60.109 55.000 15.30 5.86 0.00 2.57
218 219 1.413767 CGCTGTTCGTCGGAGGAATG 61.414 60.000 15.30 12.30 0.00 2.67
219 220 1.153823 CGCTGTTCGTCGGAGGAAT 60.154 57.895 15.30 0.00 0.00 3.01
220 221 2.257371 CGCTGTTCGTCGGAGGAA 59.743 61.111 8.92 8.92 0.00 3.36
221 222 4.415332 GCGCTGTTCGTCGGAGGA 62.415 66.667 0.00 0.00 41.07 3.71
259 260 3.670377 GAACACCTTGTGGGCGCC 61.670 66.667 21.18 21.18 37.94 6.53
260 261 2.485795 TTGAACACCTTGTGGGCGC 61.486 57.895 0.00 0.00 37.94 6.53
261 262 1.358759 GTTGAACACCTTGTGGGCG 59.641 57.895 0.00 0.00 37.94 6.13
262 263 0.820871 TTGTTGAACACCTTGTGGGC 59.179 50.000 0.00 0.00 37.94 5.36
263 264 3.258228 GTTTTGTTGAACACCTTGTGGG 58.742 45.455 0.00 0.00 37.94 4.61
264 265 2.920490 CGTTTTGTTGAACACCTTGTGG 59.080 45.455 0.00 0.00 37.94 4.17
265 266 2.344142 GCGTTTTGTTGAACACCTTGTG 59.656 45.455 0.00 0.00 39.75 3.33
266 267 2.230266 AGCGTTTTGTTGAACACCTTGT 59.770 40.909 0.00 0.00 0.00 3.16
267 268 2.874849 AGCGTTTTGTTGAACACCTTG 58.125 42.857 0.00 0.00 0.00 3.61
268 269 3.249917 CAAGCGTTTTGTTGAACACCTT 58.750 40.909 0.00 0.00 0.00 3.50
269 270 2.874849 CAAGCGTTTTGTTGAACACCT 58.125 42.857 0.00 0.00 0.00 4.00
270 271 1.323235 GCAAGCGTTTTGTTGAACACC 59.677 47.619 0.00 0.00 0.00 4.16
271 272 1.989165 TGCAAGCGTTTTGTTGAACAC 59.011 42.857 0.00 0.00 0.00 3.32
272 273 2.354109 TGCAAGCGTTTTGTTGAACA 57.646 40.000 0.00 0.00 0.00 3.18
273 274 2.029124 CCTTGCAAGCGTTTTGTTGAAC 59.971 45.455 21.43 0.00 0.00 3.18
274 275 2.266554 CCTTGCAAGCGTTTTGTTGAA 58.733 42.857 21.43 0.00 0.00 2.69
275 276 1.203523 ACCTTGCAAGCGTTTTGTTGA 59.796 42.857 21.43 0.00 0.00 3.18
276 277 1.639280 ACCTTGCAAGCGTTTTGTTG 58.361 45.000 21.43 6.48 0.00 3.33
277 278 3.181480 ACATACCTTGCAAGCGTTTTGTT 60.181 39.130 21.43 9.19 0.00 2.83
278 279 2.360801 ACATACCTTGCAAGCGTTTTGT 59.639 40.909 21.43 19.93 0.00 2.83
279 280 2.979813 GACATACCTTGCAAGCGTTTTG 59.020 45.455 21.43 19.42 0.00 2.44
280 281 2.884639 AGACATACCTTGCAAGCGTTTT 59.115 40.909 21.43 4.40 0.00 2.43
281 282 2.504367 AGACATACCTTGCAAGCGTTT 58.496 42.857 21.43 12.09 0.00 3.60
282 283 2.185004 AGACATACCTTGCAAGCGTT 57.815 45.000 21.43 9.57 0.00 4.84
283 284 1.806542 CAAGACATACCTTGCAAGCGT 59.193 47.619 21.43 20.49 37.35 5.07
284 285 2.532531 CAAGACATACCTTGCAAGCG 57.467 50.000 21.43 15.97 37.35 4.68
290 291 5.239306 TGAAGTTGAAGCAAGACATACCTTG 59.761 40.000 0.00 0.00 44.67 3.61
291 292 5.376625 TGAAGTTGAAGCAAGACATACCTT 58.623 37.500 0.00 0.00 0.00 3.50
292 293 4.973168 TGAAGTTGAAGCAAGACATACCT 58.027 39.130 0.00 0.00 0.00 3.08
293 294 5.886960 ATGAAGTTGAAGCAAGACATACC 57.113 39.130 0.00 0.00 0.00 2.73
294 295 9.846248 AAAATATGAAGTTGAAGCAAGACATAC 57.154 29.630 0.00 0.00 0.00 2.39
295 296 9.844790 CAAAATATGAAGTTGAAGCAAGACATA 57.155 29.630 0.00 0.00 0.00 2.29
296 297 8.362639 ACAAAATATGAAGTTGAAGCAAGACAT 58.637 29.630 0.00 0.00 0.00 3.06
297 298 7.715657 ACAAAATATGAAGTTGAAGCAAGACA 58.284 30.769 0.00 0.00 0.00 3.41
298 299 9.334693 CTACAAAATATGAAGTTGAAGCAAGAC 57.665 33.333 0.00 0.00 0.00 3.01
299 300 9.283768 TCTACAAAATATGAAGTTGAAGCAAGA 57.716 29.630 0.00 0.00 0.00 3.02
301 302 9.844790 CATCTACAAAATATGAAGTTGAAGCAA 57.155 29.630 0.00 0.00 0.00 3.91
302 303 9.230122 TCATCTACAAAATATGAAGTTGAAGCA 57.770 29.630 0.00 0.00 0.00 3.91
311 312 9.585099 GCACCAAATTCATCTACAAAATATGAA 57.415 29.630 0.00 0.00 42.17 2.57
312 313 8.747471 TGCACCAAATTCATCTACAAAATATGA 58.253 29.630 0.00 0.00 0.00 2.15
313 314 8.929827 TGCACCAAATTCATCTACAAAATATG 57.070 30.769 0.00 0.00 0.00 1.78
314 315 9.537192 CATGCACCAAATTCATCTACAAAATAT 57.463 29.630 0.00 0.00 0.00 1.28
315 316 8.530311 ACATGCACCAAATTCATCTACAAAATA 58.470 29.630 0.00 0.00 0.00 1.40
316 317 7.388437 ACATGCACCAAATTCATCTACAAAAT 58.612 30.769 0.00 0.00 0.00 1.82
317 318 6.757237 ACATGCACCAAATTCATCTACAAAA 58.243 32.000 0.00 0.00 0.00 2.44
318 319 6.343716 ACATGCACCAAATTCATCTACAAA 57.656 33.333 0.00 0.00 0.00 2.83
319 320 5.981088 ACATGCACCAAATTCATCTACAA 57.019 34.783 0.00 0.00 0.00 2.41
320 321 5.243507 ACAACATGCACCAAATTCATCTACA 59.756 36.000 0.00 0.00 0.00 2.74
321 322 5.713025 ACAACATGCACCAAATTCATCTAC 58.287 37.500 0.00 0.00 0.00 2.59
322 323 5.981088 ACAACATGCACCAAATTCATCTA 57.019 34.783 0.00 0.00 0.00 1.98
323 324 4.877378 ACAACATGCACCAAATTCATCT 57.123 36.364 0.00 0.00 0.00 2.90
324 325 5.236911 ACAAACAACATGCACCAAATTCATC 59.763 36.000 0.00 0.00 0.00 2.92
325 326 5.124645 ACAAACAACATGCACCAAATTCAT 58.875 33.333 0.00 0.00 0.00 2.57
326 327 4.511527 ACAAACAACATGCACCAAATTCA 58.488 34.783 0.00 0.00 0.00 2.57
327 328 5.752955 ACTACAAACAACATGCACCAAATTC 59.247 36.000 0.00 0.00 0.00 2.17
328 329 5.669477 ACTACAAACAACATGCACCAAATT 58.331 33.333 0.00 0.00 0.00 1.82
329 330 5.275067 ACTACAAACAACATGCACCAAAT 57.725 34.783 0.00 0.00 0.00 2.32
330 331 4.727507 ACTACAAACAACATGCACCAAA 57.272 36.364 0.00 0.00 0.00 3.28
331 332 4.727507 AACTACAAACAACATGCACCAA 57.272 36.364 0.00 0.00 0.00 3.67
332 333 4.727507 AAACTACAAACAACATGCACCA 57.272 36.364 0.00 0.00 0.00 4.17
333 334 8.980143 ATATAAAACTACAAACAACATGCACC 57.020 30.769 0.00 0.00 0.00 5.01
386 387 9.859427 GGTTTGAAAAATCATATGATGAACTCA 57.141 29.630 18.85 15.00 43.50 3.41
387 388 9.859427 TGGTTTGAAAAATCATATGATGAACTC 57.141 29.630 18.85 12.91 43.50 3.01
409 410 9.933723 CTCCTTTTGAATATCAAATTCTTGGTT 57.066 29.630 6.38 0.00 44.75 3.67
410 411 8.534496 CCTCCTTTTGAATATCAAATTCTTGGT 58.466 33.333 6.38 0.00 44.75 3.67
411 412 8.752187 TCCTCCTTTTGAATATCAAATTCTTGG 58.248 33.333 6.38 6.32 44.75 3.61
412 413 9.578439 GTCCTCCTTTTGAATATCAAATTCTTG 57.422 33.333 6.38 0.00 44.75 3.02
413 414 8.753133 GGTCCTCCTTTTGAATATCAAATTCTT 58.247 33.333 6.38 0.00 44.75 2.52
414 415 7.895429 TGGTCCTCCTTTTGAATATCAAATTCT 59.105 33.333 6.38 0.00 44.75 2.40
415 416 8.066612 TGGTCCTCCTTTTGAATATCAAATTC 57.933 34.615 6.38 0.00 44.75 2.17
416 417 8.480501 CATGGTCCTCCTTTTGAATATCAAATT 58.519 33.333 6.38 0.00 44.75 1.82
417 418 7.418254 GCATGGTCCTCCTTTTGAATATCAAAT 60.418 37.037 6.38 0.00 44.75 2.32
418 419 6.127366 GCATGGTCCTCCTTTTGAATATCAAA 60.127 38.462 1.57 1.57 43.84 2.69
419 420 5.360714 GCATGGTCCTCCTTTTGAATATCAA 59.639 40.000 0.00 0.00 32.64 2.57
420 421 4.889409 GCATGGTCCTCCTTTTGAATATCA 59.111 41.667 0.00 0.00 34.23 2.15
421 422 4.889409 TGCATGGTCCTCCTTTTGAATATC 59.111 41.667 0.00 0.00 34.23 1.63
422 423 4.870636 TGCATGGTCCTCCTTTTGAATAT 58.129 39.130 0.00 0.00 34.23 1.28
423 424 4.314522 TGCATGGTCCTCCTTTTGAATA 57.685 40.909 0.00 0.00 34.23 1.75
424 425 3.173953 TGCATGGTCCTCCTTTTGAAT 57.826 42.857 0.00 0.00 34.23 2.57
425 426 2.673775 TGCATGGTCCTCCTTTTGAA 57.326 45.000 0.00 0.00 34.23 2.69
426 427 2.673775 TTGCATGGTCCTCCTTTTGA 57.326 45.000 0.00 0.00 34.23 2.69
427 428 2.827322 TCATTGCATGGTCCTCCTTTTG 59.173 45.455 0.00 0.00 34.23 2.44
428 429 3.173953 TCATTGCATGGTCCTCCTTTT 57.826 42.857 0.00 0.00 34.23 2.27
429 430 2.905415 TCATTGCATGGTCCTCCTTT 57.095 45.000 0.00 0.00 34.23 3.11
430 431 2.941480 GATCATTGCATGGTCCTCCTT 58.059 47.619 0.00 0.00 34.29 3.36
431 432 2.653234 GATCATTGCATGGTCCTCCT 57.347 50.000 0.00 0.00 34.29 3.69
436 437 5.296283 GCATATCTAGGATCATTGCATGGTC 59.704 44.000 0.00 0.00 39.70 4.02
437 438 5.191426 GCATATCTAGGATCATTGCATGGT 58.809 41.667 0.00 0.00 0.00 3.55
438 439 5.190677 TGCATATCTAGGATCATTGCATGG 58.809 41.667 0.00 0.00 34.03 3.66
439 440 6.374613 ACTTGCATATCTAGGATCATTGCATG 59.625 38.462 12.54 12.54 38.30 4.06
440 441 6.482524 ACTTGCATATCTAGGATCATTGCAT 58.517 36.000 4.68 0.00 38.30 3.96
441 442 5.872963 ACTTGCATATCTAGGATCATTGCA 58.127 37.500 0.00 0.00 36.89 4.08
442 443 5.936372 TGACTTGCATATCTAGGATCATTGC 59.064 40.000 0.00 0.00 0.00 3.56
443 444 7.974482 TTGACTTGCATATCTAGGATCATTG 57.026 36.000 0.00 0.00 0.00 2.82
444 445 9.011095 CATTTGACTTGCATATCTAGGATCATT 57.989 33.333 0.00 0.00 0.00 2.57
445 446 8.162085 ACATTTGACTTGCATATCTAGGATCAT 58.838 33.333 0.00 0.00 0.00 2.45
446 447 7.512130 ACATTTGACTTGCATATCTAGGATCA 58.488 34.615 0.00 0.00 0.00 2.92
447 448 7.976135 ACATTTGACTTGCATATCTAGGATC 57.024 36.000 0.00 0.00 0.00 3.36
448 449 7.776969 ACAACATTTGACTTGCATATCTAGGAT 59.223 33.333 0.00 0.00 0.00 3.24
449 450 7.112122 ACAACATTTGACTTGCATATCTAGGA 58.888 34.615 0.00 0.00 0.00 2.94
450 451 7.325660 ACAACATTTGACTTGCATATCTAGG 57.674 36.000 0.00 0.00 0.00 3.02
451 452 9.069078 CAAACAACATTTGACTTGCATATCTAG 57.931 33.333 0.00 0.00 0.00 2.43
452 453 8.575589 ACAAACAACATTTGACTTGCATATCTA 58.424 29.630 6.40 0.00 33.43 1.98
453 454 7.383029 CACAAACAACATTTGACTTGCATATCT 59.617 33.333 6.40 0.00 33.43 1.98
454 455 7.503991 CACAAACAACATTTGACTTGCATATC 58.496 34.615 6.40 0.00 33.43 1.63
455 456 6.073657 GCACAAACAACATTTGACTTGCATAT 60.074 34.615 6.40 0.00 33.43 1.78
456 457 5.233902 GCACAAACAACATTTGACTTGCATA 59.766 36.000 6.40 0.00 33.43 3.14
457 458 4.034279 GCACAAACAACATTTGACTTGCAT 59.966 37.500 6.40 0.00 33.43 3.96
458 459 3.370366 GCACAAACAACATTTGACTTGCA 59.630 39.130 6.40 0.00 33.43 4.08
459 460 3.618150 AGCACAAACAACATTTGACTTGC 59.382 39.130 6.40 6.00 33.43 4.01
460 461 4.033129 CCAGCACAAACAACATTTGACTTG 59.967 41.667 6.40 0.00 35.03 3.16
461 462 4.183101 CCAGCACAAACAACATTTGACTT 58.817 39.130 6.40 0.00 33.83 3.01
462 463 3.430651 CCCAGCACAAACAACATTTGACT 60.431 43.478 6.40 1.17 33.83 3.41
463 464 2.865551 CCCAGCACAAACAACATTTGAC 59.134 45.455 6.40 0.00 33.83 3.18
464 465 2.741228 GCCCAGCACAAACAACATTTGA 60.741 45.455 6.40 0.00 33.83 2.69
465 466 1.598601 GCCCAGCACAAACAACATTTG 59.401 47.619 0.00 0.00 35.64 2.32
466 467 1.805871 CGCCCAGCACAAACAACATTT 60.806 47.619 0.00 0.00 0.00 2.32
467 468 0.249405 CGCCCAGCACAAACAACATT 60.249 50.000 0.00 0.00 0.00 2.71
468 469 1.363443 CGCCCAGCACAAACAACAT 59.637 52.632 0.00 0.00 0.00 2.71
469 470 2.804167 CGCCCAGCACAAACAACA 59.196 55.556 0.00 0.00 0.00 3.33
480 481 2.947118 TATACAACGCTCGCGCCCAG 62.947 60.000 11.65 0.00 44.19 4.45
481 482 2.358193 ATATACAACGCTCGCGCCCA 62.358 55.000 11.65 0.00 44.19 5.36
482 483 1.219522 AATATACAACGCTCGCGCCC 61.220 55.000 11.65 0.00 44.19 6.13
483 484 0.580104 AAATATACAACGCTCGCGCC 59.420 50.000 11.65 0.00 44.19 6.53
484 485 2.409371 GGTAAATATACAACGCTCGCGC 60.409 50.000 11.65 0.00 37.02 6.86
485 486 2.160195 CGGTAAATATACAACGCTCGCG 60.160 50.000 10.06 10.06 38.39 5.87
486 487 2.409371 GCGGTAAATATACAACGCTCGC 60.409 50.000 10.71 0.00 38.69 5.03
487 488 2.160195 CGCGGTAAATATACAACGCTCG 60.160 50.000 14.67 0.07 39.22 5.03
488 489 2.409371 GCGCGGTAAATATACAACGCTC 60.409 50.000 8.83 5.48 46.09 5.03
489 490 1.523934 GCGCGGTAAATATACAACGCT 59.476 47.619 8.83 0.00 46.09 5.07
490 491 1.928276 GCGCGGTAAATATACAACGC 58.072 50.000 8.83 8.46 44.72 4.84
491 492 2.097104 CAGGCGCGGTAAATATACAACG 60.097 50.000 8.83 0.00 35.91 4.10
492 493 2.867975 ACAGGCGCGGTAAATATACAAC 59.132 45.455 8.83 0.00 33.45 3.32
493 494 3.182341 ACAGGCGCGGTAAATATACAA 57.818 42.857 8.83 0.00 33.45 2.41
494 495 2.867368 CAACAGGCGCGGTAAATATACA 59.133 45.455 8.83 0.00 33.45 2.29
495 496 2.222445 CCAACAGGCGCGGTAAATATAC 59.778 50.000 8.83 0.00 0.00 1.47
496 497 2.102757 TCCAACAGGCGCGGTAAATATA 59.897 45.455 8.83 0.00 0.00 0.86
497 498 1.134340 TCCAACAGGCGCGGTAAATAT 60.134 47.619 8.83 0.00 0.00 1.28
498 499 0.249676 TCCAACAGGCGCGGTAAATA 59.750 50.000 8.83 0.00 0.00 1.40
499 500 1.003112 TCCAACAGGCGCGGTAAAT 60.003 52.632 8.83 0.00 0.00 1.40
500 501 1.669760 CTCCAACAGGCGCGGTAAA 60.670 57.895 8.83 0.00 0.00 2.01
501 502 2.047655 CTCCAACAGGCGCGGTAA 60.048 61.111 8.83 0.00 0.00 2.85
502 503 4.752879 GCTCCAACAGGCGCGGTA 62.753 66.667 8.83 0.00 0.00 4.02
507 508 3.123620 GAGCAGCTCCAACAGGCG 61.124 66.667 11.84 0.00 0.00 5.52
508 509 3.123620 CGAGCAGCTCCAACAGGC 61.124 66.667 17.16 0.00 0.00 4.85
509 510 2.031516 CACGAGCAGCTCCAACAGG 61.032 63.158 17.16 4.04 0.00 4.00
510 511 2.675056 GCACGAGCAGCTCCAACAG 61.675 63.158 17.16 4.78 41.58 3.16
511 512 2.666190 GCACGAGCAGCTCCAACA 60.666 61.111 17.16 0.00 41.58 3.33
512 513 3.782244 CGCACGAGCAGCTCCAAC 61.782 66.667 17.16 5.07 42.27 3.77
521 522 0.861450 AAAATATTGCGCGCACGAGC 60.861 50.000 36.72 11.92 43.93 5.03
522 523 0.833264 CAAAATATTGCGCGCACGAG 59.167 50.000 36.72 15.46 43.93 4.18
523 524 2.923353 CAAAATATTGCGCGCACGA 58.077 47.368 36.72 25.11 43.93 4.35
532 533 1.481819 GCGGCCGCTGCAAAATATTG 61.482 55.000 41.71 0.75 40.13 1.90
533 534 1.226945 GCGGCCGCTGCAAAATATT 60.227 52.632 41.71 0.00 40.13 1.28
534 535 2.412937 GCGGCCGCTGCAAAATAT 59.587 55.556 41.71 0.00 40.13 1.28
575 576 2.090503 GCGCCGAAATAGCAACTTTTTG 59.909 45.455 0.00 0.00 35.62 2.44
576 577 2.030274 AGCGCCGAAATAGCAACTTTTT 60.030 40.909 2.29 0.00 0.00 1.94
577 578 1.539827 AGCGCCGAAATAGCAACTTTT 59.460 42.857 2.29 0.00 0.00 2.27
578 579 1.135689 CAGCGCCGAAATAGCAACTTT 60.136 47.619 2.29 0.00 0.00 2.66
579 580 0.447801 CAGCGCCGAAATAGCAACTT 59.552 50.000 2.29 0.00 0.00 2.66
580 581 0.673644 ACAGCGCCGAAATAGCAACT 60.674 50.000 2.29 0.00 0.00 3.16
581 582 1.003851 TACAGCGCCGAAATAGCAAC 58.996 50.000 2.29 0.00 0.00 4.17
582 583 1.728068 TTACAGCGCCGAAATAGCAA 58.272 45.000 2.29 0.00 0.00 3.91
583 584 1.728068 TTTACAGCGCCGAAATAGCA 58.272 45.000 2.29 0.00 0.00 3.49
584 585 2.095372 ACTTTTACAGCGCCGAAATAGC 59.905 45.455 2.29 0.00 0.00 2.97
585 586 4.336532 AACTTTTACAGCGCCGAAATAG 57.663 40.909 2.29 3.00 0.00 1.73
586 587 6.425577 AATAACTTTTACAGCGCCGAAATA 57.574 33.333 2.29 0.00 0.00 1.40
587 588 4.957759 ATAACTTTTACAGCGCCGAAAT 57.042 36.364 2.29 0.00 0.00 2.17
588 589 4.752661 AATAACTTTTACAGCGCCGAAA 57.247 36.364 2.29 0.00 0.00 3.46
589 590 4.752661 AAATAACTTTTACAGCGCCGAA 57.247 36.364 2.29 0.00 0.00 4.30
590 591 4.752661 AAAATAACTTTTACAGCGCCGA 57.247 36.364 2.29 0.00 32.81 5.54
591 592 4.494410 GCTAAAATAACTTTTACAGCGCCG 59.506 41.667 2.29 0.00 36.09 6.46
592 593 4.494410 CGCTAAAATAACTTTTACAGCGCC 59.506 41.667 2.29 0.00 45.14 6.53
593 594 5.585194 CGCTAAAATAACTTTTACAGCGC 57.415 39.130 0.00 0.00 45.14 5.92
595 596 4.028750 GCGCGCTAAAATAACTTTTACAGC 60.029 41.667 26.67 0.00 36.09 4.40
596 597 4.494410 GGCGCGCTAAAATAACTTTTACAG 59.506 41.667 32.29 0.00 36.09 2.74
597 598 4.405196 GGCGCGCTAAAATAACTTTTACA 58.595 39.130 32.29 0.00 36.09 2.41
598 599 3.476024 CGGCGCGCTAAAATAACTTTTAC 59.524 43.478 32.29 6.92 36.09 2.01
599 600 3.672310 CGGCGCGCTAAAATAACTTTTA 58.328 40.909 32.29 0.00 36.09 1.52
600 601 2.511879 CGGCGCGCTAAAATAACTTTT 58.488 42.857 32.29 0.00 38.17 2.27
601 602 2.168201 CGGCGCGCTAAAATAACTTT 57.832 45.000 32.29 0.00 0.00 2.66
602 603 3.889780 CGGCGCGCTAAAATAACTT 57.110 47.368 32.29 0.00 0.00 2.66
622 623 4.389576 CCAAGAGGCACGCAACGC 62.390 66.667 0.00 0.00 0.00 4.84
623 624 2.664851 TCCAAGAGGCACGCAACG 60.665 61.111 0.00 0.00 33.74 4.10
624 625 0.674895 ATCTCCAAGAGGCACGCAAC 60.675 55.000 0.00 0.00 33.74 4.17
625 626 0.674581 CATCTCCAAGAGGCACGCAA 60.675 55.000 0.00 0.00 33.74 4.85
626 627 1.078918 CATCTCCAAGAGGCACGCA 60.079 57.895 0.00 0.00 33.74 5.24
627 628 3.805267 CATCTCCAAGAGGCACGC 58.195 61.111 0.00 0.00 33.74 5.34
632 633 4.100653 TCTTGTCATAGCATCTCCAAGAGG 59.899 45.833 0.00 0.00 34.88 3.69
633 634 5.273674 TCTTGTCATAGCATCTCCAAGAG 57.726 43.478 0.00 0.00 34.88 2.85
634 635 5.364735 TCATCTTGTCATAGCATCTCCAAGA 59.635 40.000 9.56 9.56 41.54 3.02
635 636 5.466058 GTCATCTTGTCATAGCATCTCCAAG 59.534 44.000 0.00 0.00 0.00 3.61
636 637 5.363101 GTCATCTTGTCATAGCATCTCCAA 58.637 41.667 0.00 0.00 0.00 3.53
637 638 4.500375 CGTCATCTTGTCATAGCATCTCCA 60.500 45.833 0.00 0.00 0.00 3.86
638 639 3.986572 CGTCATCTTGTCATAGCATCTCC 59.013 47.826 0.00 0.00 0.00 3.71
639 640 3.428198 GCGTCATCTTGTCATAGCATCTC 59.572 47.826 0.00 0.00 0.00 2.75
640 641 3.388308 GCGTCATCTTGTCATAGCATCT 58.612 45.455 0.00 0.00 0.00 2.90
641 642 2.478134 GGCGTCATCTTGTCATAGCATC 59.522 50.000 0.00 0.00 0.00 3.91
642 643 2.103771 AGGCGTCATCTTGTCATAGCAT 59.896 45.455 0.00 0.00 0.00 3.79
643 644 1.482182 AGGCGTCATCTTGTCATAGCA 59.518 47.619 0.00 0.00 0.00 3.49
644 645 2.231215 AGGCGTCATCTTGTCATAGC 57.769 50.000 0.00 0.00 0.00 2.97
645 646 4.576216 AGTAGGCGTCATCTTGTCATAG 57.424 45.455 0.00 0.00 0.00 2.23
646 647 5.131067 AGTAGTAGGCGTCATCTTGTCATA 58.869 41.667 0.00 0.00 0.00 2.15
647 648 3.954904 AGTAGTAGGCGTCATCTTGTCAT 59.045 43.478 0.00 0.00 0.00 3.06
648 649 3.353557 AGTAGTAGGCGTCATCTTGTCA 58.646 45.455 0.00 0.00 0.00 3.58
649 650 3.377485 TGAGTAGTAGGCGTCATCTTGTC 59.623 47.826 0.00 0.00 0.00 3.18
650 651 3.353557 TGAGTAGTAGGCGTCATCTTGT 58.646 45.455 0.00 0.00 0.00 3.16
651 652 4.576216 ATGAGTAGTAGGCGTCATCTTG 57.424 45.455 0.00 0.00 0.00 3.02
652 653 4.645136 TCAATGAGTAGTAGGCGTCATCTT 59.355 41.667 0.00 0.00 0.00 2.40
653 654 4.207955 TCAATGAGTAGTAGGCGTCATCT 58.792 43.478 0.00 0.00 0.00 2.90
654 655 4.569761 TCAATGAGTAGTAGGCGTCATC 57.430 45.455 0.00 0.00 0.00 2.92
655 656 4.021894 GGATCAATGAGTAGTAGGCGTCAT 60.022 45.833 0.00 0.00 0.00 3.06
656 657 3.318275 GGATCAATGAGTAGTAGGCGTCA 59.682 47.826 0.00 0.00 0.00 4.35
657 658 3.305471 GGGATCAATGAGTAGTAGGCGTC 60.305 52.174 0.00 0.00 0.00 5.19
658 659 2.628657 GGGATCAATGAGTAGTAGGCGT 59.371 50.000 0.00 0.00 0.00 5.68
687 688 4.907582 GTGGAAACTTGACGGAAATTTACG 59.092 41.667 21.15 21.15 41.22 3.18
704 705 5.789643 AAGCAAGCAATTAGAAGTGGAAA 57.210 34.783 0.00 0.00 0.00 3.13
768 985 1.220477 TTGCGATGATGGAGCGGAA 59.780 52.632 0.00 0.00 41.83 4.30
787 1004 0.944386 GCGCCAAGTGAGACTTTGAA 59.056 50.000 0.00 0.00 36.03 2.69
799 1016 2.901051 ATTAGACGACCGGCGCCAAG 62.901 60.000 28.98 19.90 46.04 3.61
815 1032 1.007963 ACCAGAGAAGTCCGGGGATTA 59.992 52.381 0.00 0.00 0.00 1.75
1012 1234 1.153086 GATCGGCCATGGCAAGTCT 60.153 57.895 36.56 20.33 44.11 3.24
1095 1326 2.507102 GCGAACTGCAGCGAGCTA 60.507 61.111 15.27 0.00 45.94 3.32
1101 1332 2.730672 CTGGTACGCGAACTGCAGC 61.731 63.158 15.93 0.00 46.97 5.25
1360 1609 1.599797 CCGGGTTGTTGGTGAGGAC 60.600 63.158 0.00 0.00 0.00 3.85
1453 1702 3.231954 GAACTCGAGCGCGACGAC 61.232 66.667 23.52 13.59 42.51 4.34
1498 1747 3.041940 GACGTGGTTGCCGTCCAG 61.042 66.667 0.00 0.00 46.73 3.86
1708 2179 1.359459 GCGAAACCCACGGAGATGTC 61.359 60.000 0.00 0.00 0.00 3.06
1746 2217 2.856000 ACCTGGTTCAGCTGGGCT 60.856 61.111 15.13 0.00 40.77 5.19
1840 2311 0.178068 ACCAGCACGGCGAGAAATAT 59.822 50.000 16.62 0.00 39.03 1.28
3186 5714 7.259882 TCAATCAATGTACATTTGATTCTGGC 58.740 34.615 26.31 0.00 32.03 4.85
3209 5737 6.627087 AGGGTGAACTAGAAAGAATCATCA 57.373 37.500 0.00 0.00 30.05 3.07
3317 5849 2.653726 CCCTGCAATGCAATACTACCA 58.346 47.619 9.92 0.00 38.41 3.25
3607 6165 5.390567 GGAACAATAAAGACTACAACGCAGG 60.391 44.000 0.00 0.00 0.00 4.85
3638 6196 5.596268 GCAATTGCTTTAAAGAAACCAGG 57.404 39.130 23.21 6.51 38.21 4.45
3669 6227 5.634896 CGCAGAAATCATTTTCAGCTAACT 58.365 37.500 12.08 0.00 46.43 2.24
3673 6231 2.730090 CGCGCAGAAATCATTTTCAGCT 60.730 45.455 8.75 0.00 46.43 4.24
3693 6251 3.067320 TCAGTGCTCAGGATATTGACTCG 59.933 47.826 0.00 0.00 0.00 4.18
3696 6254 3.129871 GCTCAGTGCTCAGGATATTGAC 58.870 50.000 0.00 0.00 38.95 3.18
3706 6264 2.283173 TCTCCGGCTCAGTGCTCA 60.283 61.111 0.00 0.00 42.39 4.26
3713 6271 2.676822 AGCTTCGTCTCCGGCTCA 60.677 61.111 0.00 0.00 27.24 4.26
3752 6311 1.934220 TACTCGCCTCGCCTTGTCTG 61.934 60.000 0.00 0.00 0.00 3.51
3776 6335 1.471287 GTTGTCCCCTTATTGGTTCGC 59.529 52.381 0.00 0.00 0.00 4.70
3777 6336 2.486592 GTGTTGTCCCCTTATTGGTTCG 59.513 50.000 0.00 0.00 0.00 3.95
3780 6339 1.783979 TGGTGTTGTCCCCTTATTGGT 59.216 47.619 0.00 0.00 0.00 3.67
3783 6342 2.225017 CCAGTGGTGTTGTCCCCTTATT 60.225 50.000 0.00 0.00 0.00 1.40
3785 6344 0.768622 CCAGTGGTGTTGTCCCCTTA 59.231 55.000 0.00 0.00 0.00 2.69
3816 6375 2.877335 CTTTAGAGTTCCCTTCGTCGG 58.123 52.381 0.00 0.00 0.00 4.79
3817 6376 2.094649 AGCTTTAGAGTTCCCTTCGTCG 60.095 50.000 0.00 0.00 0.00 5.12
3819 6378 3.323979 TCAAGCTTTAGAGTTCCCTTCGT 59.676 43.478 0.00 0.00 0.00 3.85
3845 6404 2.930019 TCTCCCCCACACCTGCTG 60.930 66.667 0.00 0.00 0.00 4.41
3849 6408 3.208592 TCCCTCTCCCCCACACCT 61.209 66.667 0.00 0.00 0.00 4.00
3854 6413 3.216371 AACCCTCCCTCTCCCCCA 61.216 66.667 0.00 0.00 0.00 4.96
3867 6426 2.125832 TTCGGCGTCGATGAACCC 60.126 61.111 15.13 0.00 45.51 4.11
3873 6432 0.179134 CTTCCTTCTTCGGCGTCGAT 60.179 55.000 15.13 0.00 45.51 3.59
3875 6434 1.805945 CCTTCCTTCTTCGGCGTCG 60.806 63.158 1.15 1.15 37.82 5.12
3877 6436 2.047179 GCCTTCCTTCTTCGGCGT 60.047 61.111 6.85 0.00 32.22 5.68
3878 6437 0.108329 TAAGCCTTCCTTCTTCGGCG 60.108 55.000 0.00 0.00 46.85 6.46
3891 6450 3.579151 GTCCCGATATTCCTTCTAAGCCT 59.421 47.826 0.00 0.00 0.00 4.58
3905 6464 0.659427 GACATGTCGTCGTCCCGATA 59.341 55.000 10.69 0.00 39.34 2.92
3924 6483 3.877612 TAACCGTCGTGCACCGTCG 62.878 63.158 12.15 14.85 45.47 5.12
3925 6484 2.050168 TAACCGTCGTGCACCGTC 60.050 61.111 12.15 3.72 37.94 4.79
3926 6485 2.049802 CTAACCGTCGTGCACCGT 60.050 61.111 12.15 0.00 37.94 4.83
3927 6486 2.807895 CCTAACCGTCGTGCACCG 60.808 66.667 12.15 9.99 38.13 4.94
3933 6492 0.610232 ACCACTAGCCTAACCGTCGT 60.610 55.000 0.00 0.00 0.00 4.34
3959 6518 4.019858 CCTATTCCTCTATCAGCGATCCA 58.980 47.826 0.00 0.00 0.00 3.41
3960 6519 4.274147 TCCTATTCCTCTATCAGCGATCC 58.726 47.826 0.00 0.00 0.00 3.36
3975 6534 3.125316 CAGCCGTTCTTGTGTTCCTATTC 59.875 47.826 0.00 0.00 0.00 1.75
3989 6548 1.376037 CCCAGAGTTCCAGCCGTTC 60.376 63.158 0.00 0.00 0.00 3.95
3993 6552 0.915364 ATCTTCCCAGAGTTCCAGCC 59.085 55.000 0.00 0.00 30.36 4.85
3994 6553 3.034635 TCTATCTTCCCAGAGTTCCAGC 58.965 50.000 0.00 0.00 30.36 4.85
3997 6556 7.797062 AGTTTATTCTATCTTCCCAGAGTTCC 58.203 38.462 0.00 0.00 30.36 3.62
4026 6585 3.670625 TCGTTGATTCCCACCACTTAAG 58.329 45.455 0.00 0.00 0.00 1.85
4073 6632 8.830915 TCAAATTGAAAAAGGCCATAGGTATA 57.169 30.769 5.01 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.