Multiple sequence alignment - TraesCS2D01G455700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G455700 chr2D 100.000 7190 0 0 747 7936 563937392 563944581 0.000000e+00 13278.0
1 TraesCS2D01G455700 chr2D 100.000 457 0 0 1 457 563936646 563937102 0.000000e+00 845.0
2 TraesCS2D01G455700 chr2D 80.851 94 13 3 3747 3840 465334832 465334744 1.430000e-07 69.4
3 TraesCS2D01G455700 chr2D 95.349 43 2 0 1569 1611 563938159 563938201 1.430000e-07 69.4
4 TraesCS2D01G455700 chr2D 95.349 43 2 0 1514 1556 563938214 563938256 1.430000e-07 69.4
5 TraesCS2D01G455700 chr2A 93.060 6830 286 67 747 7523 703970974 703977668 0.000000e+00 9814.0
6 TraesCS2D01G455700 chr2A 95.137 329 15 1 6442 6769 18627529 18627201 1.180000e-142 518.0
7 TraesCS2D01G455700 chr2A 86.779 416 29 8 7525 7936 703977713 703978106 2.630000e-119 440.0
8 TraesCS2D01G455700 chr2A 81.034 464 33 17 48 457 703970474 703970936 1.290000e-82 318.0
9 TraesCS2D01G455700 chr2A 95.349 43 2 0 1514 1556 703971760 703971802 1.430000e-07 69.4
10 TraesCS2D01G455700 chr2B 93.630 6578 274 45 996 7523 674299813 674306295 0.000000e+00 9692.0
11 TraesCS2D01G455700 chr2B 92.308 299 12 3 7545 7840 674306521 674306811 1.590000e-111 414.0
12 TraesCS2D01G455700 chr2B 83.122 237 14 7 245 455 674299030 674299266 8.130000e-45 193.0
13 TraesCS2D01G455700 chr2B 81.197 117 15 6 747 859 674299309 674299422 3.950000e-13 87.9
14 TraesCS2D01G455700 chr7B 88.976 381 36 5 3202 3577 11017374 11016995 4.340000e-127 466.0
15 TraesCS2D01G455700 chr7B 88.298 94 6 2 3747 3840 138742343 138742431 3.030000e-19 108.0
16 TraesCS2D01G455700 chr6A 87.240 384 39 6 3202 3577 105054412 105054793 5.690000e-116 429.0
17 TraesCS2D01G455700 chr6A 84.791 263 33 4 4974 5230 565419399 565419138 2.840000e-64 257.0
18 TraesCS2D01G455700 chr4D 83.463 387 45 6 3210 3577 81361824 81362210 7.630000e-90 342.0
19 TraesCS2D01G455700 chr5D 82.005 389 49 11 3202 3571 25470369 25470755 2.150000e-80 311.0
20 TraesCS2D01G455700 chr5D 80.952 273 36 7 3319 3575 25470759 25471031 1.350000e-47 202.0
21 TraesCS2D01G455700 chr1B 93.125 160 11 0 5837 5996 51627931 51627772 1.330000e-57 235.0
22 TraesCS2D01G455700 chr7D 87.234 94 7 2 3747 3840 174147845 174147933 1.410000e-17 102.0
23 TraesCS2D01G455700 chr7D 83.871 93 10 3 3747 3835 378174971 378174880 5.100000e-12 84.2
24 TraesCS2D01G455700 chr5A 83.516 91 12 2 3747 3835 645424890 645424979 1.840000e-11 82.4
25 TraesCS2D01G455700 chr3D 82.609 92 11 3 3747 3838 172597555 172597469 8.540000e-10 76.8
26 TraesCS2D01G455700 chr3B 82.022 89 11 4 3747 3835 404592057 404591974 3.970000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G455700 chr2D 563936646 563944581 7935 False 7061.500 13278 100.00000 1 7936 2 chr2D.!!$F1 7935
1 TraesCS2D01G455700 chr2A 703970474 703977668 7194 False 5066.000 9814 87.04700 48 7523 2 chr2A.!!$F3 7475
2 TraesCS2D01G455700 chr2B 674299030 674306811 7781 False 2596.725 9692 87.56425 245 7840 4 chr2B.!!$F1 7595
3 TraesCS2D01G455700 chr5D 25470369 25471031 662 False 256.500 311 81.47850 3202 3575 2 chr5D.!!$F1 373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 909 0.047176 TCCCTCTCTCCCCTCTCTCT 59.953 60.000 0.0 0.0 0.00 3.10 F
835 910 0.478507 CCCTCTCTCCCCTCTCTCTC 59.521 65.000 0.0 0.0 0.00 3.20 F
1199 1542 0.606604 TGAAAGTCTCCCGGTGCTAC 59.393 55.000 0.0 0.0 0.00 3.58 F
1293 1636 1.134699 TGATCTGATGCGTTCCCTCAC 60.135 52.381 0.0 0.0 0.00 3.51 F
2015 2379 1.204146 TGTATCTGAGGGAAGTGGCC 58.796 55.000 0.0 0.0 0.00 5.36 F
2554 2921 0.039256 TTCTGCTCAAATTGTGGCGC 60.039 50.000 0.0 0.0 0.00 6.53 F
2785 3184 1.068125 TGTTGTCGATCATTCGGTCGT 60.068 47.619 0.0 0.0 45.53 4.34 F
3519 4209 1.140407 GAGTTCGGACTTCGGATGCG 61.140 60.000 0.0 0.0 35.88 4.73 F
4739 5433 1.611006 TGCATAAAGCTTGCGGTTGAA 59.389 42.857 0.0 0.0 45.94 2.69 F
5170 5865 0.034756 GCCTTTTTGCCCCAAACGAT 59.965 50.000 0.0 0.0 32.79 3.73 F
6598 7301 0.332632 TCCCCATTCTCAGCCAAAGG 59.667 55.000 0.0 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2185 0.391130 CCGCATTCGAGTGGAAGGAA 60.391 55.000 10.16 0.0 41.75 3.36 R
2139 2506 0.812549 TGCATAGACCAAGCGTCGTA 59.187 50.000 0.00 0.0 46.92 3.43 R
2373 2740 0.868406 AGTTAACACGCTTGCTCAGC 59.132 50.000 8.61 0.0 46.31 4.26 R
2515 2882 0.954452 AAGCAAGAGCAAAACCTCCG 59.046 50.000 0.00 0.0 45.49 4.63 R
3928 4621 0.110056 CACGACAAAGGCAGATGCAC 60.110 55.000 7.19 0.0 44.36 4.57 R
4096 4789 2.159572 CGGCCGTCTTATTTTCAACAGG 60.160 50.000 19.50 0.0 0.00 4.00 R
4754 5448 1.374560 AGCAACGTACAAACACAGCA 58.625 45.000 0.00 0.0 0.00 4.41 R
5109 5803 0.240945 GCAGTGGCAGCGTTTATGTT 59.759 50.000 0.00 0.0 40.72 2.71 R
6311 7014 0.179073 AGCACTGGTCGGCATCATAC 60.179 55.000 0.00 0.0 0.00 2.39 R
6611 7314 1.135689 GCGTTGTTGGCTTCTGGTATG 60.136 52.381 0.00 0.0 0.00 2.39 R
7803 8785 0.179140 CTGAGAGCGAGACAGAAGGC 60.179 60.000 0.00 0.0 34.07 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.494811 TGGATAAGTGAGCACGCG 57.505 55.556 3.53 3.53 36.20 6.01
18 19 1.809619 TGGATAAGTGAGCACGCGC 60.810 57.895 5.73 0.00 36.20 6.86
19 20 2.615618 GATAAGTGAGCACGCGCG 59.384 61.111 30.96 30.96 45.49 6.86
20 21 3.478345 GATAAGTGAGCACGCGCGC 62.478 63.158 32.58 23.91 45.49 6.86
31 32 4.753131 CGCGCGCGTGTGTGTAAG 62.753 66.667 42.49 13.34 34.35 2.34
32 33 4.424430 GCGCGCGTGTGTGTAAGG 62.424 66.667 32.35 0.00 0.00 2.69
33 34 3.773630 CGCGCGTGTGTGTAAGGG 61.774 66.667 24.19 0.00 0.00 3.95
34 35 4.084888 GCGCGTGTGTGTAAGGGC 62.085 66.667 8.43 0.00 35.54 5.19
35 36 2.663520 CGCGTGTGTGTAAGGGCA 60.664 61.111 0.00 0.00 0.00 5.36
36 37 2.032634 CGCGTGTGTGTAAGGGCAT 61.033 57.895 0.00 0.00 0.00 4.40
37 38 1.794222 GCGTGTGTGTAAGGGCATC 59.206 57.895 0.00 0.00 0.00 3.91
38 39 1.966493 GCGTGTGTGTAAGGGCATCG 61.966 60.000 0.00 0.00 0.00 3.84
39 40 0.389296 CGTGTGTGTAAGGGCATCGA 60.389 55.000 0.00 0.00 0.00 3.59
40 41 1.359848 GTGTGTGTAAGGGCATCGAG 58.640 55.000 0.00 0.00 0.00 4.04
41 42 1.067142 GTGTGTGTAAGGGCATCGAGA 60.067 52.381 0.00 0.00 0.00 4.04
42 43 1.621317 TGTGTGTAAGGGCATCGAGAA 59.379 47.619 0.00 0.00 0.00 2.87
43 44 2.236146 TGTGTGTAAGGGCATCGAGAAT 59.764 45.455 0.00 0.00 0.00 2.40
44 45 2.866762 GTGTGTAAGGGCATCGAGAATC 59.133 50.000 0.00 0.00 0.00 2.52
45 46 2.766263 TGTGTAAGGGCATCGAGAATCT 59.234 45.455 0.00 0.00 0.00 2.40
46 47 3.126831 GTGTAAGGGCATCGAGAATCTG 58.873 50.000 0.00 0.00 0.00 2.90
47 48 2.139118 GTAAGGGCATCGAGAATCTGC 58.861 52.381 0.00 0.00 35.75 4.26
48 49 0.835941 AAGGGCATCGAGAATCTGCT 59.164 50.000 7.79 0.00 36.62 4.24
49 50 0.392336 AGGGCATCGAGAATCTGCTC 59.608 55.000 7.79 3.87 37.06 4.26
50 51 0.392336 GGGCATCGAGAATCTGCTCT 59.608 55.000 7.79 0.00 34.26 4.09
51 52 1.605202 GGGCATCGAGAATCTGCTCTC 60.605 57.143 7.79 0.00 34.26 3.20
52 53 1.340889 GGCATCGAGAATCTGCTCTCT 59.659 52.381 7.79 0.00 39.85 3.10
53 54 2.607771 GGCATCGAGAATCTGCTCTCTC 60.608 54.545 7.79 0.00 39.85 3.20
54 55 2.294233 GCATCGAGAATCTGCTCTCTCT 59.706 50.000 0.73 0.00 39.85 3.10
80 82 0.691413 CTCTCCTACCCCAACTCCCC 60.691 65.000 0.00 0.00 0.00 4.81
85 87 1.201424 CTACCCCAACTCCCCTGTAC 58.799 60.000 0.00 0.00 0.00 2.90
91 93 0.321653 CAACTCCCCTGTACTGCCAC 60.322 60.000 0.00 0.00 0.00 5.01
93 95 1.982395 CTCCCCTGTACTGCCACGA 60.982 63.158 0.00 0.00 0.00 4.35
110 112 4.444720 GCCACGAATTCGAGTTAATAGAGG 59.555 45.833 33.05 17.13 43.02 3.69
161 163 4.406972 TCATAGATACCATGCTGGGATAGC 59.593 45.833 7.06 0.00 42.42 2.97
175 177 3.820467 TGGGATAGCAATCATTTTAGGCG 59.180 43.478 0.00 0.00 33.41 5.52
176 178 3.366374 GGGATAGCAATCATTTTAGGCGC 60.366 47.826 0.00 0.00 33.41 6.53
190 192 1.306148 AGGCGCATTGTGATGAGATG 58.694 50.000 10.83 0.00 35.36 2.90
199 224 3.808466 TGTGATGAGATGAGCTACCAC 57.192 47.619 0.00 0.00 0.00 4.16
200 225 3.369175 TGTGATGAGATGAGCTACCACT 58.631 45.455 0.00 0.00 0.00 4.00
202 227 3.131933 GTGATGAGATGAGCTACCACTGT 59.868 47.826 0.00 0.00 0.00 3.55
204 229 3.599730 TGAGATGAGCTACCACTGTTG 57.400 47.619 0.00 0.00 0.00 3.33
224 249 3.135225 TGGTCGATCGTGTCATTGTTTT 58.865 40.909 15.94 0.00 0.00 2.43
225 250 3.562141 TGGTCGATCGTGTCATTGTTTTT 59.438 39.130 15.94 0.00 0.00 1.94
344 369 4.794439 CGACGCAGACCATCGGCA 62.794 66.667 2.02 0.00 37.43 5.69
345 370 2.202932 GACGCAGACCATCGGCAT 60.203 61.111 2.02 0.00 37.43 4.40
392 443 5.154222 CCACTTCAAATTAAGTTCGGAAGC 58.846 41.667 12.86 0.00 37.61 3.86
396 447 6.918022 ACTTCAAATTAAGTTCGGAAGCAAAG 59.082 34.615 12.86 0.00 36.26 2.77
405 456 9.620660 TTAAGTTCGGAAGCAAAGAAATATTTC 57.379 29.630 18.70 18.70 37.45 2.17
418 469 2.332063 ATATTTCCAGTCCACGCAGG 57.668 50.000 0.00 0.00 39.47 4.85
419 470 0.981183 TATTTCCAGTCCACGCAGGT 59.019 50.000 0.00 0.00 39.02 4.00
825 900 0.105709 CTCTTCCCCTCCCTCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
826 901 1.074850 CTTCCCCTCCCTCTCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
827 902 2.613576 CTTCCCCTCCCTCTCTCCCC 62.614 70.000 0.00 0.00 0.00 4.81
828 903 3.039526 CCCCTCCCTCTCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
829 904 2.612251 CCCTCCCTCTCTCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
830 905 2.018086 CCCTCCCTCTCTCCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
831 906 1.541672 CCTCCCTCTCTCCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
832 907 0.998945 CCTCCCTCTCTCCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
833 908 0.478507 CTCCCTCTCTCCCCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
834 909 0.047176 TCCCTCTCTCCCCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
835 910 0.478507 CCCTCTCTCCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
895 970 1.514553 GCGCTAGGGTTTACTCCGT 59.485 57.895 8.77 0.00 0.00 4.69
1076 1419 3.181510 CCTTCGCCCTTCTTTTATGTTCG 60.182 47.826 0.00 0.00 0.00 3.95
1077 1420 1.735571 TCGCCCTTCTTTTATGTTCGC 59.264 47.619 0.00 0.00 0.00 4.70
1192 1535 0.882927 TGGCGTTTGAAAGTCTCCCG 60.883 55.000 0.00 0.00 0.00 5.14
1198 1541 1.344065 TTGAAAGTCTCCCGGTGCTA 58.656 50.000 0.00 0.00 0.00 3.49
1199 1542 0.606604 TGAAAGTCTCCCGGTGCTAC 59.393 55.000 0.00 0.00 0.00 3.58
1202 1545 4.849329 GTCTCCCGGTGCTACGCG 62.849 72.222 3.53 3.53 0.00 6.01
1214 1557 3.478724 CTACGCGCCCACGATGCTA 62.479 63.158 5.73 0.00 43.93 3.49
1243 1586 2.679930 GCGGGTTTAGGTTAGCATGAGT 60.680 50.000 0.00 0.00 0.00 3.41
1244 1587 2.936498 CGGGTTTAGGTTAGCATGAGTG 59.064 50.000 0.00 0.00 0.00 3.51
1250 1593 6.602009 GGTTTAGGTTAGCATGAGTGGTAAAT 59.398 38.462 0.00 0.00 46.41 1.40
1261 1604 4.827692 TGAGTGGTAAATTACTGATGCGT 58.172 39.130 2.96 0.00 0.00 5.24
1264 1607 5.726397 AGTGGTAAATTACTGATGCGTGTA 58.274 37.500 2.96 0.00 0.00 2.90
1293 1636 1.134699 TGATCTGATGCGTTCCCTCAC 60.135 52.381 0.00 0.00 0.00 3.51
1324 1668 9.976511 CGGTCCATTCTTAGTATTATTCTGTAA 57.023 33.333 0.00 0.00 0.00 2.41
1354 1698 3.770933 TGTCTGATGTGATGGACTGATGA 59.229 43.478 0.00 0.00 0.00 2.92
1359 1703 6.988580 TCTGATGTGATGGACTGATGAATTAC 59.011 38.462 0.00 0.00 0.00 1.89
1373 1729 7.067494 ACTGATGAATTACCTTTACCTGCATTC 59.933 37.037 0.00 0.00 0.00 2.67
1448 1804 2.355363 TTCCGACGCGAAGTGGTG 60.355 61.111 15.93 0.00 45.78 4.17
1525 1882 2.863137 GGTGCTTCGTTCTGATCTCATC 59.137 50.000 0.00 0.00 0.00 2.92
1526 1883 3.430098 GGTGCTTCGTTCTGATCTCATCT 60.430 47.826 0.00 0.00 0.00 2.90
1528 1885 3.122297 GCTTCGTTCTGATCTCATCTGG 58.878 50.000 0.00 0.00 0.00 3.86
1529 1886 2.879002 TCGTTCTGATCTCATCTGGC 57.121 50.000 0.00 0.00 0.00 4.85
1531 1888 2.697229 TCGTTCTGATCTCATCTGGCAT 59.303 45.455 0.00 0.00 0.00 4.40
1532 1889 3.133542 TCGTTCTGATCTCATCTGGCATT 59.866 43.478 0.00 0.00 0.00 3.56
1533 1890 3.875727 CGTTCTGATCTCATCTGGCATTT 59.124 43.478 0.00 0.00 0.00 2.32
1534 1891 4.334759 CGTTCTGATCTCATCTGGCATTTT 59.665 41.667 0.00 0.00 0.00 1.82
1535 1892 5.163683 CGTTCTGATCTCATCTGGCATTTTT 60.164 40.000 0.00 0.00 0.00 1.94
1536 1893 6.264088 GTTCTGATCTCATCTGGCATTTTTC 58.736 40.000 0.00 0.00 0.00 2.29
1537 1894 5.752650 TCTGATCTCATCTGGCATTTTTCT 58.247 37.500 0.00 0.00 0.00 2.52
1538 1895 5.821470 TCTGATCTCATCTGGCATTTTTCTC 59.179 40.000 0.00 0.00 0.00 2.87
1539 1896 5.752650 TGATCTCATCTGGCATTTTTCTCT 58.247 37.500 0.00 0.00 0.00 3.10
1540 1897 5.589050 TGATCTCATCTGGCATTTTTCTCTG 59.411 40.000 0.00 0.00 0.00 3.35
1541 1898 3.693085 TCTCATCTGGCATTTTTCTCTGC 59.307 43.478 0.00 0.00 37.66 4.26
1542 1899 3.423749 TCATCTGGCATTTTTCTCTGCA 58.576 40.909 0.00 0.00 40.18 4.41
1543 1900 3.442625 TCATCTGGCATTTTTCTCTGCAG 59.557 43.478 7.63 7.63 40.18 4.41
1544 1901 3.144657 TCTGGCATTTTTCTCTGCAGA 57.855 42.857 17.19 17.19 40.18 4.26
1545 1902 2.816087 TCTGGCATTTTTCTCTGCAGAC 59.184 45.455 13.74 0.00 40.18 3.51
1546 1903 2.555325 CTGGCATTTTTCTCTGCAGACA 59.445 45.455 13.74 0.00 40.18 3.41
1547 1904 2.957680 TGGCATTTTTCTCTGCAGACAA 59.042 40.909 13.74 6.27 40.18 3.18
1548 1905 3.575256 TGGCATTTTTCTCTGCAGACAAT 59.425 39.130 13.74 6.12 40.18 2.71
1549 1906 4.039488 TGGCATTTTTCTCTGCAGACAATT 59.961 37.500 13.74 0.10 40.18 2.32
1550 1907 5.243507 TGGCATTTTTCTCTGCAGACAATTA 59.756 36.000 13.74 0.52 40.18 1.40
1551 1908 6.158598 GGCATTTTTCTCTGCAGACAATTAA 58.841 36.000 13.74 7.22 40.18 1.40
1552 1909 6.646240 GGCATTTTTCTCTGCAGACAATTAAA 59.354 34.615 13.74 8.09 40.18 1.52
1553 1910 7.359514 GGCATTTTTCTCTGCAGACAATTAAAC 60.360 37.037 13.74 0.00 40.18 2.01
1613 1970 8.445275 TTTCTCTGCAGACAATTAAACTGTTA 57.555 30.769 13.74 0.00 34.60 2.41
1760 2124 1.532868 CTTGTCTCCTTCCTGTTTGCG 59.467 52.381 0.00 0.00 0.00 4.85
1784 2148 5.342259 GCAACCAACTCGCTTTAATTAGTTG 59.658 40.000 8.83 8.83 45.33 3.16
1818 2182 3.669122 GCTAACTACGAACTGTGTGAGTG 59.331 47.826 0.00 0.00 34.02 3.51
1819 2183 4.556104 GCTAACTACGAACTGTGTGAGTGA 60.556 45.833 0.00 0.00 34.02 3.41
1820 2184 3.627732 ACTACGAACTGTGTGAGTGAG 57.372 47.619 0.00 0.00 34.02 3.51
1821 2185 2.950309 ACTACGAACTGTGTGAGTGAGT 59.050 45.455 0.00 0.00 34.02 3.41
1827 2191 3.460857 ACTGTGTGAGTGAGTTCCTTC 57.539 47.619 0.00 0.00 31.75 3.46
1875 2239 4.497291 TTAGTCCTTTGTGTGTTGTCCT 57.503 40.909 0.00 0.00 0.00 3.85
1877 2241 1.597663 GTCCTTTGTGTGTTGTCCTCG 59.402 52.381 0.00 0.00 0.00 4.63
2007 2371 4.576463 GGCTAAACACATTGTATCTGAGGG 59.424 45.833 0.00 0.00 0.00 4.30
2008 2372 5.428253 GCTAAACACATTGTATCTGAGGGA 58.572 41.667 0.00 0.00 0.00 4.20
2009 2373 5.880332 GCTAAACACATTGTATCTGAGGGAA 59.120 40.000 0.00 0.00 0.00 3.97
2011 2375 5.505181 AACACATTGTATCTGAGGGAAGT 57.495 39.130 0.00 0.00 0.00 3.01
2014 2378 3.209410 CATTGTATCTGAGGGAAGTGGC 58.791 50.000 0.00 0.00 0.00 5.01
2015 2379 1.204146 TGTATCTGAGGGAAGTGGCC 58.796 55.000 0.00 0.00 0.00 5.36
2016 2380 1.273838 TGTATCTGAGGGAAGTGGCCT 60.274 52.381 3.32 0.00 0.00 5.19
2082 2448 9.031360 GTCAACTGAATTAGCGAGTATTTCATA 57.969 33.333 0.00 0.00 32.90 2.15
2139 2506 5.012561 GCTTATGACCTGAGTTATGGAGGAT 59.987 44.000 0.00 0.00 0.00 3.24
2168 2535 1.764723 TGGTCTATGCATCTGGTCCTG 59.235 52.381 0.19 0.00 0.00 3.86
2213 2580 7.907389 ACTTGAGAACATCCAGTTAGTAATGA 58.093 34.615 0.00 0.00 41.51 2.57
2320 2687 8.748380 ATAGCAGTTTAAAAGATCAAGCAAAC 57.252 30.769 0.00 0.47 0.00 2.93
2373 2740 7.038048 TGTACTTCACAAGAGATCTGCAATAG 58.962 38.462 0.00 0.00 32.95 1.73
2460 2827 7.862372 TGACAGTTTTATGAACTTGAAATGCTC 59.138 33.333 0.00 0.00 0.00 4.26
2490 2857 4.921644 TGAAAAACCTAGGGTTAGGAGG 57.078 45.455 13.82 0.00 46.20 4.30
2515 2882 2.463876 AGTTCGCTTTCAGCTTTTTGC 58.536 42.857 0.00 0.00 39.60 3.68
2526 2893 0.581529 GCTTTTTGCGGAGGTTTTGC 59.418 50.000 0.00 0.00 0.00 3.68
2545 2912 2.689471 TGCTCTTGCTTTTCTGCTCAAA 59.311 40.909 0.00 0.00 40.48 2.69
2546 2913 3.319972 TGCTCTTGCTTTTCTGCTCAAAT 59.680 39.130 0.00 0.00 40.48 2.32
2554 2921 0.039256 TTCTGCTCAAATTGTGGCGC 60.039 50.000 0.00 0.00 0.00 6.53
2567 2934 1.532794 TGGCGCCTTGGTTGGATTT 60.533 52.632 29.70 0.00 0.00 2.17
2586 2953 5.008118 GGATTTACACTTCCTTCTATGCTGC 59.992 44.000 0.00 0.00 0.00 5.25
2687 3086 5.575606 CAGATTAAGGCTGATGCTGTTTTTG 59.424 40.000 2.76 0.00 39.59 2.44
2689 3088 3.375782 AAGGCTGATGCTGTTTTTGTC 57.624 42.857 0.00 0.00 39.59 3.18
2705 3104 8.276252 TGTTTTTGTCTTGTCTAGTTTTAGCT 57.724 30.769 0.00 0.00 0.00 3.32
2712 3111 7.230913 TGTCTTGTCTAGTTTTAGCTCTAGTGT 59.769 37.037 6.98 0.00 36.17 3.55
2725 3124 3.871594 GCTCTAGTGTTGTTTGTCAGTGT 59.128 43.478 0.00 0.00 0.00 3.55
2766 3165 3.249917 GTTGGTTGTGACCTGTGTTTTG 58.750 45.455 0.00 0.00 46.66 2.44
2785 3184 1.068125 TGTTGTCGATCATTCGGTCGT 60.068 47.619 0.00 0.00 45.53 4.34
2919 3320 5.639506 TGCTATAACAGTGTTCTTCTTGCTC 59.360 40.000 12.82 0.00 0.00 4.26
3081 3482 8.613060 TTCATTTGATATGCCTCTTGTATCTC 57.387 34.615 0.00 0.00 0.00 2.75
3241 3642 8.976986 ATGAAACTGCTATTGAAGTTCAAATC 57.023 30.769 21.57 13.50 41.04 2.17
3519 4209 1.140407 GAGTTCGGACTTCGGATGCG 61.140 60.000 0.00 0.00 35.88 4.73
3616 4306 6.039382 ACAATTTACCTGTTTCTTGAGTCCAC 59.961 38.462 0.00 0.00 0.00 4.02
3721 4411 7.821652 TGTTTATCTGTGTGTCACTTGAAAAA 58.178 30.769 4.27 0.00 35.11 1.94
3774 4464 1.807742 CCGTTCCAAAATAAGTGCCGA 59.192 47.619 0.00 0.00 0.00 5.54
3775 4465 2.422127 CCGTTCCAAAATAAGTGCCGAT 59.578 45.455 0.00 0.00 0.00 4.18
3811 4504 9.045772 CAAATTTGAACTAAAACAAAACAACGG 57.954 29.630 13.08 0.00 39.01 4.44
3982 4675 7.325579 CACAGTTGACATGATGATATAGAGACG 59.674 40.741 0.00 0.00 0.00 4.18
4115 4808 4.023536 TGTTCCTGTTGAAAATAAGACGGC 60.024 41.667 0.00 0.00 33.94 5.68
4117 4810 2.159572 CCTGTTGAAAATAAGACGGCCG 60.160 50.000 26.86 26.86 0.00 6.13
4333 5027 8.869897 TGTGCTGTTATTCTTAACTTCTATTCG 58.130 33.333 0.00 0.00 38.81 3.34
4334 5028 8.870879 GTGCTGTTATTCTTAACTTCTATTCGT 58.129 33.333 0.00 0.00 38.81 3.85
4345 5039 9.651718 CTTAACTTCTATTCGTATTGAAATGCC 57.348 33.333 1.25 0.00 40.71 4.40
4346 5040 6.619801 ACTTCTATTCGTATTGAAATGCCC 57.380 37.500 1.25 0.00 40.71 5.36
4347 5041 6.357367 ACTTCTATTCGTATTGAAATGCCCT 58.643 36.000 1.25 0.00 40.71 5.19
4348 5042 6.828785 ACTTCTATTCGTATTGAAATGCCCTT 59.171 34.615 1.25 0.00 40.71 3.95
4349 5043 7.339466 ACTTCTATTCGTATTGAAATGCCCTTT 59.661 33.333 1.25 0.00 40.71 3.11
4350 5044 7.259290 TCTATTCGTATTGAAATGCCCTTTC 57.741 36.000 2.70 2.70 43.05 2.62
4351 5045 4.712122 TTCGTATTGAAATGCCCTTTCC 57.288 40.909 6.44 0.00 42.23 3.13
4352 5046 3.963129 TCGTATTGAAATGCCCTTTCCT 58.037 40.909 6.44 0.00 42.23 3.36
4353 5047 4.340617 TCGTATTGAAATGCCCTTTCCTT 58.659 39.130 6.44 0.00 42.23 3.36
4354 5048 4.770010 TCGTATTGAAATGCCCTTTCCTTT 59.230 37.500 6.44 0.00 42.23 3.11
4355 5049 4.864247 CGTATTGAAATGCCCTTTCCTTTG 59.136 41.667 6.44 0.00 42.23 2.77
4356 5050 4.980339 ATTGAAATGCCCTTTCCTTTGT 57.020 36.364 6.44 0.00 42.23 2.83
4474 5168 2.189521 GTCGGGTAGGTGCCATGG 59.810 66.667 7.63 7.63 0.00 3.66
4691 5385 7.662604 AATTTGATGTCCTGAAAGCATTTTC 57.337 32.000 0.00 0.00 39.27 2.29
4739 5433 1.611006 TGCATAAAGCTTGCGGTTGAA 59.389 42.857 0.00 0.00 45.94 2.69
4754 5448 3.756434 CGGTTGAATGTGGAGTTGGTATT 59.244 43.478 0.00 0.00 0.00 1.89
4797 5491 5.702865 TCACTGATAAAGCAGCAATTGAAC 58.297 37.500 10.34 0.00 39.51 3.18
4861 5555 3.057315 CCCTTTGCAGTCATTGTGGTAAG 60.057 47.826 0.00 0.00 0.00 2.34
4907 5601 5.739959 TGTTTTGAGGCATATAGCTGTACA 58.260 37.500 0.00 0.00 44.79 2.90
4915 5609 5.942236 AGGCATATAGCTGTACATTTGGATG 59.058 40.000 0.00 0.00 44.79 3.51
4925 5619 4.932799 TGTACATTTGGATGTCACCGTAAG 59.067 41.667 0.00 0.00 42.83 2.34
5011 5705 6.043854 TGTGGTGTAGTATTGCTGTTGATA 57.956 37.500 0.00 0.00 0.00 2.15
5035 5729 4.404715 TGAGGCAGGGTATTGACTTAGTAC 59.595 45.833 0.00 0.00 36.28 2.73
5048 5742 5.893687 TGACTTAGTACGAACACTTGAACA 58.106 37.500 0.00 0.00 0.00 3.18
5167 5862 4.473643 GGCCTTTTTGCCCCAAAC 57.526 55.556 0.00 0.00 46.11 2.93
5170 5865 0.034756 GCCTTTTTGCCCCAAACGAT 59.965 50.000 0.00 0.00 32.79 3.73
5213 5908 6.855836 ACATCATTTTGCATGGTTAGTACTG 58.144 36.000 5.39 0.00 0.00 2.74
5249 5944 8.094548 TGTATACTGACATCTATTTGGCCATAC 58.905 37.037 6.09 0.10 0.00 2.39
5355 6055 8.965819 ACCATAAGCTAGTCATATGATAGTCAG 58.034 37.037 9.02 3.60 30.12 3.51
5422 6122 1.366319 ACATCCTTGACTTCAGGCCT 58.634 50.000 0.00 0.00 0.00 5.19
5580 6280 9.271828 TGATTATGATATCGCATTGTTACAACT 57.728 29.630 0.00 0.00 0.00 3.16
5805 6505 6.213600 AGGTGTGTTTCTTATCCAGTGATACT 59.786 38.462 0.00 0.00 33.19 2.12
5810 6510 9.303537 GTGTTTCTTATCCAGTGATACTTCTAC 57.696 37.037 0.00 0.00 33.19 2.59
5834 6534 4.202030 CCTTCTAGGTCGTATCAACTGTCC 60.202 50.000 0.00 0.00 0.00 4.02
5847 6547 4.695396 TCAACTGTCCGTAGTTTGCTAAA 58.305 39.130 0.00 0.00 38.78 1.85
5878 6578 6.042093 TCAACTTTCCATAGAGTGAACTGTCT 59.958 38.462 0.00 0.00 0.00 3.41
5894 6594 4.130118 ACTGTCTGGTGTTCATGTTTCTC 58.870 43.478 0.00 0.00 0.00 2.87
6050 6753 8.560576 TTCATTTCGAAGTTGAAATTTGTCTC 57.439 30.769 18.02 0.00 44.08 3.36
6051 6754 7.138736 TCATTTCGAAGTTGAAATTTGTCTCC 58.861 34.615 9.63 0.00 44.08 3.71
6052 6755 6.693315 TTTCGAAGTTGAAATTTGTCTCCT 57.307 33.333 0.00 0.00 33.12 3.69
6098 6801 5.682234 TTGTCTGTATCACATCACAGGAT 57.318 39.130 2.20 0.00 42.01 3.24
6131 6834 1.750399 CTTGGGACCTGGGCGATTG 60.750 63.158 0.00 0.00 0.00 2.67
6230 6933 1.345415 CCATGGAAGCTGGCAAAACTT 59.655 47.619 5.56 0.00 0.00 2.66
6254 6957 0.597568 CAAACGAGGCCATGAAAGCA 59.402 50.000 5.01 0.00 0.00 3.91
6293 6996 1.071542 TCTTCATCCGTGCTGAAACCA 59.928 47.619 0.00 0.00 32.53 3.67
6311 7014 1.949525 CCAATCAATAGCCGTTCCCAG 59.050 52.381 0.00 0.00 0.00 4.45
6314 7017 4.389374 CAATCAATAGCCGTTCCCAGTAT 58.611 43.478 0.00 0.00 0.00 2.12
6317 7020 3.646162 TCAATAGCCGTTCCCAGTATGAT 59.354 43.478 0.00 0.00 39.69 2.45
6377 7080 3.193263 CAGTGTCATGAGTGCTGATACC 58.807 50.000 13.01 0.00 35.92 2.73
6440 7143 0.623617 GGTCCCCTTATCCACCCAGT 60.624 60.000 0.00 0.00 0.00 4.00
6470 7173 3.063180 GTGCAGATGACATTGAGCTGTAC 59.937 47.826 0.00 7.14 35.64 2.90
6539 7242 1.491274 TTGCAGAGCACCATCCCTCA 61.491 55.000 0.00 0.00 38.71 3.86
6598 7301 0.332632 TCCCCATTCTCAGCCAAAGG 59.667 55.000 0.00 0.00 0.00 3.11
6611 7314 0.108662 CCAAAGGAAATGAAGCGGCC 60.109 55.000 0.00 0.00 0.00 6.13
6788 7491 5.517322 ACACCGGTCAGTCTATATTCTTC 57.483 43.478 2.59 0.00 0.00 2.87
6908 7611 1.061905 TCATTCCCGCTGATCCCCAT 61.062 55.000 0.00 0.00 0.00 4.00
7143 7846 4.717877 TCAAGGAAAAAGATGTCTGAGCA 58.282 39.130 0.00 0.00 0.00 4.26
7263 7973 6.732896 ATCCGATTACTACCAGAAATGTCT 57.267 37.500 0.00 0.00 32.85 3.41
7269 7979 8.071368 CGATTACTACCAGAAATGTCTAGAGTC 58.929 40.741 0.00 0.00 30.85 3.36
7270 7980 9.127277 GATTACTACCAGAAATGTCTAGAGTCT 57.873 37.037 0.00 0.00 30.85 3.24
7271 7981 6.767524 ACTACCAGAAATGTCTAGAGTCTG 57.232 41.667 1.86 12.56 36.33 3.51
7272 7982 6.486056 ACTACCAGAAATGTCTAGAGTCTGA 58.514 40.000 17.93 0.00 38.37 3.27
7273 7983 6.948886 ACTACCAGAAATGTCTAGAGTCTGAA 59.051 38.462 17.93 9.19 38.37 3.02
7274 7984 6.672266 ACCAGAAATGTCTAGAGTCTGAAA 57.328 37.500 17.93 0.00 38.37 2.69
7275 7985 7.251321 ACCAGAAATGTCTAGAGTCTGAAAT 57.749 36.000 17.93 0.00 38.37 2.17
7276 7986 8.367660 ACCAGAAATGTCTAGAGTCTGAAATA 57.632 34.615 17.93 0.00 38.37 1.40
7277 7987 8.986991 ACCAGAAATGTCTAGAGTCTGAAATAT 58.013 33.333 17.93 0.00 38.37 1.28
7278 7988 9.474920 CCAGAAATGTCTAGAGTCTGAAATATC 57.525 37.037 17.93 0.00 38.37 1.63
7393 8152 7.665559 TCACCTAAAGTTGCATCTTGTTTAGAT 59.334 33.333 10.72 0.00 44.60 1.98
7394 8153 8.299570 CACCTAAAGTTGCATCTTGTTTAGATT 58.700 33.333 10.72 0.00 41.78 2.40
7395 8154 8.860088 ACCTAAAGTTGCATCTTGTTTAGATTT 58.140 29.630 10.72 0.00 41.78 2.17
7396 8155 9.696917 CCTAAAGTTGCATCTTGTTTAGATTTT 57.303 29.630 10.72 0.00 41.78 1.82
7417 8176 5.993748 TTTTTAGGGGGCATCTTGTTTAG 57.006 39.130 0.00 0.00 0.00 1.85
7418 8177 3.662759 TTAGGGGGCATCTTGTTTAGG 57.337 47.619 0.00 0.00 0.00 2.69
7523 8298 3.876309 TGGATTGGGGCTAATTCCTAC 57.124 47.619 0.00 0.00 0.00 3.18
7524 8299 2.105821 TGGATTGGGGCTAATTCCTACG 59.894 50.000 0.00 0.00 0.00 3.51
7525 8300 2.552373 GGATTGGGGCTAATTCCTACGG 60.552 54.545 0.00 0.00 0.00 4.02
7527 8302 1.420430 TGGGGCTAATTCCTACGGAG 58.580 55.000 0.00 0.00 31.21 4.63
7547 8322 8.084590 ACGGAGTAGTTGTCTAAATTTTTCAG 57.915 34.615 0.00 0.00 41.94 3.02
7548 8323 7.015877 CGGAGTAGTTGTCTAAATTTTTCAGC 58.984 38.462 0.00 0.00 0.00 4.26
7557 8536 7.648142 TGTCTAAATTTTTCAGCGATTCAGTT 58.352 30.769 0.00 0.00 0.00 3.16
7581 8560 4.578928 ACACTAAACTTGCACCTTGGTTAG 59.421 41.667 9.87 9.87 0.00 2.34
7589 8568 2.888414 TGCACCTTGGTTAGCCTAAAAC 59.112 45.455 0.00 0.00 35.27 2.43
7594 8573 5.180680 CACCTTGGTTAGCCTAAAACTGTAC 59.819 44.000 0.00 0.00 35.27 2.90
7653 8632 9.653287 CGCCTGAGGTTTATATATGAAGATAAA 57.347 33.333 0.00 0.00 0.00 1.40
7745 8724 4.187056 GCTTACAGCGACACTCCC 57.813 61.111 0.00 0.00 0.00 4.30
7746 8725 1.292223 GCTTACAGCGACACTCCCA 59.708 57.895 0.00 0.00 0.00 4.37
7747 8726 0.320421 GCTTACAGCGACACTCCCAA 60.320 55.000 0.00 0.00 0.00 4.12
7748 8727 1.876416 GCTTACAGCGACACTCCCAAA 60.876 52.381 0.00 0.00 0.00 3.28
7749 8728 2.069273 CTTACAGCGACACTCCCAAAG 58.931 52.381 0.00 0.00 0.00 2.77
7750 8729 1.045407 TACAGCGACACTCCCAAAGT 58.955 50.000 0.00 0.00 39.44 2.66
7751 8730 0.249911 ACAGCGACACTCCCAAAGTC 60.250 55.000 0.00 0.00 35.45 3.01
7752 8731 0.951040 CAGCGACACTCCCAAAGTCC 60.951 60.000 0.00 0.00 35.45 3.85
7753 8732 1.671379 GCGACACTCCCAAAGTCCC 60.671 63.158 0.00 0.00 35.45 4.46
7777 8756 7.308435 CCAATCAAGAATGTACTCACCTTTTC 58.692 38.462 0.00 0.00 0.00 2.29
7803 8785 4.739046 AAAAGAAGACAGAATGCACTCG 57.261 40.909 0.00 0.00 42.53 4.18
7815 8797 1.803519 GCACTCGCCTTCTGTCTCG 60.804 63.158 0.00 0.00 0.00 4.04
7840 8822 7.062255 CGCTCTCAGAATATATCATAAAACGCA 59.938 37.037 0.00 0.00 0.00 5.24
7841 8823 8.877779 GCTCTCAGAATATATCATAAAACGCAT 58.122 33.333 0.00 0.00 0.00 4.73
7850 8832 9.811655 ATATATCATAAAACGCATTTTGACTCG 57.188 29.630 0.00 0.00 38.50 4.18
7851 8833 5.351233 TCATAAAACGCATTTTGACTCGT 57.649 34.783 0.00 0.00 38.50 4.18
7852 8834 5.753744 TCATAAAACGCATTTTGACTCGTT 58.246 33.333 0.00 0.00 45.51 3.85
7853 8835 6.889494 TCATAAAACGCATTTTGACTCGTTA 58.111 32.000 0.00 0.00 43.23 3.18
7854 8836 7.353497 TCATAAAACGCATTTTGACTCGTTAA 58.647 30.769 0.00 0.00 43.23 2.01
7855 8837 7.532546 TCATAAAACGCATTTTGACTCGTTAAG 59.467 33.333 0.00 0.00 43.23 1.85
7856 8838 5.412526 AAACGCATTTTGACTCGTTAAGA 57.587 34.783 0.00 0.00 43.23 2.10
7857 8839 4.385244 ACGCATTTTGACTCGTTAAGAC 57.615 40.909 0.00 0.00 0.00 3.01
7858 8840 3.805422 ACGCATTTTGACTCGTTAAGACA 59.195 39.130 0.00 0.00 0.00 3.41
7859 8841 4.271533 ACGCATTTTGACTCGTTAAGACAA 59.728 37.500 0.00 0.00 37.78 3.18
7860 8842 5.049680 ACGCATTTTGACTCGTTAAGACAAT 60.050 36.000 0.00 0.00 38.99 2.71
7861 8843 5.281376 CGCATTTTGACTCGTTAAGACAATG 59.719 40.000 0.00 0.00 38.99 2.82
7862 8844 5.059710 GCATTTTGACTCGTTAAGACAATGC 59.940 40.000 0.00 0.00 38.99 3.56
7863 8845 6.373779 CATTTTGACTCGTTAAGACAATGCT 58.626 36.000 0.00 0.00 38.99 3.79
7864 8846 6.371809 TTTTGACTCGTTAAGACAATGCTT 57.628 33.333 0.00 0.00 38.99 3.91
7865 8847 6.371809 TTTGACTCGTTAAGACAATGCTTT 57.628 33.333 0.00 0.00 38.99 3.51
7866 8848 7.485418 TTTGACTCGTTAAGACAATGCTTTA 57.515 32.000 0.00 0.00 38.99 1.85
7867 8849 7.485418 TTGACTCGTTAAGACAATGCTTTAA 57.515 32.000 0.00 0.00 35.23 1.52
7868 8850 6.884187 TGACTCGTTAAGACAATGCTTTAAC 58.116 36.000 9.01 9.01 0.00 2.01
7869 8851 6.073440 TGACTCGTTAAGACAATGCTTTAACC 60.073 38.462 11.84 2.97 0.00 2.85
7870 8852 5.761234 ACTCGTTAAGACAATGCTTTAACCA 59.239 36.000 11.84 2.72 0.00 3.67
7871 8853 6.261381 ACTCGTTAAGACAATGCTTTAACCAA 59.739 34.615 11.84 3.82 0.00 3.67
7872 8854 7.040686 ACTCGTTAAGACAATGCTTTAACCAAT 60.041 33.333 11.84 0.16 0.00 3.16
7873 8855 8.325421 TCGTTAAGACAATGCTTTAACCAATA 57.675 30.769 11.84 0.00 0.00 1.90
7874 8856 8.784994 TCGTTAAGACAATGCTTTAACCAATAA 58.215 29.630 11.84 0.00 0.00 1.40
7875 8857 9.567848 CGTTAAGACAATGCTTTAACCAATAAT 57.432 29.630 11.84 0.00 0.00 1.28
7879 8861 8.353423 AGACAATGCTTTAACCAATAATCAGT 57.647 30.769 0.00 0.00 0.00 3.41
7880 8862 8.806146 AGACAATGCTTTAACCAATAATCAGTT 58.194 29.630 0.00 0.00 0.00 3.16
7881 8863 9.423061 GACAATGCTTTAACCAATAATCAGTTT 57.577 29.630 0.00 0.00 0.00 2.66
7882 8864 9.206870 ACAATGCTTTAACCAATAATCAGTTTG 57.793 29.630 0.00 0.00 0.00 2.93
7883 8865 9.206870 CAATGCTTTAACCAATAATCAGTTTGT 57.793 29.630 0.00 0.00 0.00 2.83
7884 8866 8.986477 ATGCTTTAACCAATAATCAGTTTGTC 57.014 30.769 0.00 0.00 0.00 3.18
7885 8867 7.946207 TGCTTTAACCAATAATCAGTTTGTCA 58.054 30.769 0.00 0.00 0.00 3.58
7886 8868 8.584157 TGCTTTAACCAATAATCAGTTTGTCAT 58.416 29.630 0.00 0.00 0.00 3.06
7887 8869 9.423061 GCTTTAACCAATAATCAGTTTGTCATT 57.577 29.630 0.00 0.00 0.00 2.57
7892 8874 9.859427 AACCAATAATCAGTTTGTCATTATGTG 57.141 29.630 0.00 0.00 0.00 3.21
7893 8875 9.023962 ACCAATAATCAGTTTGTCATTATGTGT 57.976 29.630 0.00 0.00 0.00 3.72
7894 8876 9.507280 CCAATAATCAGTTTGTCATTATGTGTC 57.493 33.333 0.00 0.00 0.00 3.67
7895 8877 9.507280 CAATAATCAGTTTGTCATTATGTGTCC 57.493 33.333 0.00 0.00 0.00 4.02
7896 8878 9.466497 AATAATCAGTTTGTCATTATGTGTCCT 57.534 29.630 0.00 0.00 0.00 3.85
7897 8879 6.992063 ATCAGTTTGTCATTATGTGTCCTC 57.008 37.500 0.00 0.00 0.00 3.71
7898 8880 4.929211 TCAGTTTGTCATTATGTGTCCTCG 59.071 41.667 0.00 0.00 0.00 4.63
7899 8881 4.690748 CAGTTTGTCATTATGTGTCCTCGT 59.309 41.667 0.00 0.00 0.00 4.18
7900 8882 4.690748 AGTTTGTCATTATGTGTCCTCGTG 59.309 41.667 0.00 0.00 0.00 4.35
7901 8883 3.953712 TGTCATTATGTGTCCTCGTGT 57.046 42.857 0.00 0.00 0.00 4.49
7902 8884 3.584834 TGTCATTATGTGTCCTCGTGTG 58.415 45.455 0.00 0.00 0.00 3.82
7903 8885 3.257127 TGTCATTATGTGTCCTCGTGTGA 59.743 43.478 0.00 0.00 0.00 3.58
7904 8886 4.081697 TGTCATTATGTGTCCTCGTGTGAT 60.082 41.667 0.00 0.00 0.00 3.06
7905 8887 5.126384 TGTCATTATGTGTCCTCGTGTGATA 59.874 40.000 0.00 0.00 0.00 2.15
7906 8888 5.687730 GTCATTATGTGTCCTCGTGTGATAG 59.312 44.000 0.00 0.00 0.00 2.08
7907 8889 5.359860 TCATTATGTGTCCTCGTGTGATAGT 59.640 40.000 0.00 0.00 0.00 2.12
7908 8890 6.544564 TCATTATGTGTCCTCGTGTGATAGTA 59.455 38.462 0.00 0.00 0.00 1.82
7909 8891 6.954487 TTATGTGTCCTCGTGTGATAGTAT 57.046 37.500 0.00 0.00 0.00 2.12
7910 8892 4.632538 TGTGTCCTCGTGTGATAGTATG 57.367 45.455 0.00 0.00 0.00 2.39
7911 8893 4.266714 TGTGTCCTCGTGTGATAGTATGA 58.733 43.478 0.00 0.00 0.00 2.15
7912 8894 4.887655 TGTGTCCTCGTGTGATAGTATGAT 59.112 41.667 0.00 0.00 0.00 2.45
7913 8895 6.059484 TGTGTCCTCGTGTGATAGTATGATA 58.941 40.000 0.00 0.00 0.00 2.15
7914 8896 6.715264 TGTGTCCTCGTGTGATAGTATGATAT 59.285 38.462 0.00 0.00 0.00 1.63
7915 8897 7.881232 TGTGTCCTCGTGTGATAGTATGATATA 59.119 37.037 0.00 0.00 0.00 0.86
7916 8898 8.727910 GTGTCCTCGTGTGATAGTATGATATAA 58.272 37.037 0.00 0.00 0.00 0.98
7917 8899 9.292195 TGTCCTCGTGTGATAGTATGATATAAA 57.708 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.809619 GCGCGTGCTCACTTATCCA 60.810 57.895 15.02 0.00 38.39 3.41
1 2 2.860628 CGCGCGTGCTCACTTATCC 61.861 63.158 24.19 0.00 39.65 2.59
2 3 2.615618 CGCGCGTGCTCACTTATC 59.384 61.111 24.19 0.00 39.65 1.75
3 4 3.554692 GCGCGCGTGCTCACTTAT 61.555 61.111 35.43 0.00 39.65 1.73
15 16 4.424430 CCTTACACACACGCGCGC 62.424 66.667 32.58 23.91 0.00 6.86
16 17 3.773630 CCCTTACACACACGCGCG 61.774 66.667 30.96 30.96 0.00 6.86
17 18 4.084888 GCCCTTACACACACGCGC 62.085 66.667 5.73 0.00 0.00 6.86
18 19 1.966493 GATGCCCTTACACACACGCG 61.966 60.000 3.53 3.53 0.00 6.01
19 20 1.794222 GATGCCCTTACACACACGC 59.206 57.895 0.00 0.00 0.00 5.34
20 21 0.389296 TCGATGCCCTTACACACACG 60.389 55.000 0.00 0.00 0.00 4.49
21 22 1.067142 TCTCGATGCCCTTACACACAC 60.067 52.381 0.00 0.00 0.00 3.82
22 23 1.262417 TCTCGATGCCCTTACACACA 58.738 50.000 0.00 0.00 0.00 3.72
23 24 2.380084 TTCTCGATGCCCTTACACAC 57.620 50.000 0.00 0.00 0.00 3.82
24 25 2.766263 AGATTCTCGATGCCCTTACACA 59.234 45.455 0.00 0.00 0.00 3.72
25 26 3.126831 CAGATTCTCGATGCCCTTACAC 58.873 50.000 0.00 0.00 0.00 2.90
26 27 2.483714 GCAGATTCTCGATGCCCTTACA 60.484 50.000 0.00 0.00 33.81 2.41
27 28 2.139118 GCAGATTCTCGATGCCCTTAC 58.861 52.381 0.00 0.00 33.81 2.34
28 29 2.036475 GAGCAGATTCTCGATGCCCTTA 59.964 50.000 4.38 0.00 40.89 2.69
29 30 0.835941 AGCAGATTCTCGATGCCCTT 59.164 50.000 4.38 0.00 40.89 3.95
30 31 0.392336 GAGCAGATTCTCGATGCCCT 59.608 55.000 4.38 0.00 40.89 5.19
31 32 0.392336 AGAGCAGATTCTCGATGCCC 59.608 55.000 4.38 0.00 40.89 5.36
32 33 1.340889 AGAGAGCAGATTCTCGATGCC 59.659 52.381 4.38 0.00 46.51 4.40
33 34 2.294233 AGAGAGAGCAGATTCTCGATGC 59.706 50.000 0.00 0.00 46.51 3.91
34 35 3.058016 GGAGAGAGAGCAGATTCTCGATG 60.058 52.174 0.00 0.00 46.51 3.84
35 36 3.149196 GGAGAGAGAGCAGATTCTCGAT 58.851 50.000 0.00 0.00 46.51 3.59
36 37 2.571212 GGAGAGAGAGCAGATTCTCGA 58.429 52.381 0.00 0.00 46.51 4.04
37 38 1.608590 GGGAGAGAGAGCAGATTCTCG 59.391 57.143 0.00 0.00 46.51 4.04
38 39 2.949447 AGGGAGAGAGAGCAGATTCTC 58.051 52.381 0.00 0.00 43.16 2.87
39 40 3.436470 GGTAGGGAGAGAGAGCAGATTCT 60.436 52.174 0.00 0.00 0.00 2.40
40 41 2.890945 GGTAGGGAGAGAGAGCAGATTC 59.109 54.545 0.00 0.00 0.00 2.52
41 42 2.517980 AGGTAGGGAGAGAGAGCAGATT 59.482 50.000 0.00 0.00 0.00 2.40
42 43 2.108250 GAGGTAGGGAGAGAGAGCAGAT 59.892 54.545 0.00 0.00 0.00 2.90
43 44 1.493022 GAGGTAGGGAGAGAGAGCAGA 59.507 57.143 0.00 0.00 0.00 4.26
44 45 1.494721 AGAGGTAGGGAGAGAGAGCAG 59.505 57.143 0.00 0.00 0.00 4.24
45 46 1.493022 GAGAGGTAGGGAGAGAGAGCA 59.507 57.143 0.00 0.00 0.00 4.26
46 47 1.202891 GGAGAGGTAGGGAGAGAGAGC 60.203 61.905 0.00 0.00 0.00 4.09
47 48 2.418669 AGGAGAGGTAGGGAGAGAGAG 58.581 57.143 0.00 0.00 0.00 3.20
48 49 2.598288 AGGAGAGGTAGGGAGAGAGA 57.402 55.000 0.00 0.00 0.00 3.10
49 50 2.374170 GGTAGGAGAGGTAGGGAGAGAG 59.626 59.091 0.00 0.00 0.00 3.20
50 51 2.420705 GGTAGGAGAGGTAGGGAGAGA 58.579 57.143 0.00 0.00 0.00 3.10
51 52 1.426215 GGGTAGGAGAGGTAGGGAGAG 59.574 61.905 0.00 0.00 0.00 3.20
52 53 1.532038 GGGTAGGAGAGGTAGGGAGA 58.468 60.000 0.00 0.00 0.00 3.71
53 54 0.483770 GGGGTAGGAGAGGTAGGGAG 59.516 65.000 0.00 0.00 0.00 4.30
54 55 0.254444 TGGGGTAGGAGAGGTAGGGA 60.254 60.000 0.00 0.00 0.00 4.20
80 82 1.920574 CTCGAATTCGTGGCAGTACAG 59.079 52.381 25.93 9.99 40.80 2.74
85 87 5.041287 TCTATTAACTCGAATTCGTGGCAG 58.959 41.667 27.68 19.86 40.80 4.85
91 93 8.011106 GTCTCTACCTCTATTAACTCGAATTCG 58.989 40.741 21.78 21.78 41.45 3.34
93 95 7.041235 CGGTCTCTACCTCTATTAACTCGAATT 60.041 40.741 0.00 0.00 44.35 2.17
110 112 9.338291 GGAAAATTTGATTTTTACGGTCTCTAC 57.662 33.333 0.00 0.00 42.15 2.59
130 132 7.698506 CAGCATGGTATCTATGATGGAAAAT 57.301 36.000 0.00 0.00 38.06 1.82
161 163 4.422840 TCACAATGCGCCTAAAATGATTG 58.577 39.130 4.18 8.14 0.00 2.67
162 164 4.717233 TCACAATGCGCCTAAAATGATT 57.283 36.364 4.18 0.00 0.00 2.57
172 174 1.263484 CTCATCTCATCACAATGCGCC 59.737 52.381 4.18 0.00 32.58 6.53
175 177 3.497640 GGTAGCTCATCTCATCACAATGC 59.502 47.826 0.00 0.00 32.58 3.56
176 178 4.510711 GTGGTAGCTCATCTCATCACAATG 59.489 45.833 0.00 0.00 0.00 2.82
199 224 1.996292 ATGACACGATCGACCAACAG 58.004 50.000 24.34 4.77 0.00 3.16
200 225 2.065512 CAATGACACGATCGACCAACA 58.934 47.619 24.34 13.79 0.00 3.33
202 227 2.448926 ACAATGACACGATCGACCAA 57.551 45.000 24.34 4.91 0.00 3.67
204 229 3.806316 AAAACAATGACACGATCGACC 57.194 42.857 24.34 10.43 0.00 4.79
224 249 2.724454 TCTGGTGGACCAAAACGAAAA 58.276 42.857 0.00 0.00 46.97 2.29
225 250 2.421751 TCTGGTGGACCAAAACGAAA 57.578 45.000 0.00 0.00 46.97 3.46
240 265 0.689623 GGCCTCCTCATACCATCTGG 59.310 60.000 0.00 0.00 42.17 3.86
243 268 1.722034 TCTGGCCTCCTCATACCATC 58.278 55.000 3.32 0.00 0.00 3.51
248 273 2.050144 GTTGGATCTGGCCTCCTCATA 58.950 52.381 3.32 0.00 33.69 2.15
344 369 3.131223 CGTCCAGTGACATGAGTTCCTAT 59.869 47.826 0.00 0.00 41.85 2.57
345 370 2.492088 CGTCCAGTGACATGAGTTCCTA 59.508 50.000 0.00 0.00 41.85 2.94
392 443 5.095490 GCGTGGACTGGAAATATTTCTTTG 58.905 41.667 23.85 16.79 37.35 2.77
396 447 3.065371 CCTGCGTGGACTGGAAATATTTC 59.935 47.826 18.22 18.22 38.35 2.17
754 816 4.424566 GCGACGGCGGTAGTGGAA 62.425 66.667 15.06 0.00 38.16 3.53
1055 1398 3.727970 GCGAACATAAAAGAAGGGCGAAG 60.728 47.826 0.00 0.00 0.00 3.79
1170 1513 1.673920 GGAGACTTTCAAACGCCACAA 59.326 47.619 0.00 0.00 0.00 3.33
1198 1541 4.873129 CTAGCATCGTGGGCGCGT 62.873 66.667 8.43 0.00 38.14 6.01
1202 1545 2.071844 TAGTCGCTAGCATCGTGGGC 62.072 60.000 16.45 0.00 0.00 5.36
1203 1546 0.039978 CTAGTCGCTAGCATCGTGGG 60.040 60.000 16.45 0.00 0.00 4.61
1204 1547 3.463574 CTAGTCGCTAGCATCGTGG 57.536 57.895 16.45 0.00 0.00 4.94
1214 1557 0.969409 ACCTAAACCCGCTAGTCGCT 60.969 55.000 0.00 0.00 36.73 4.93
1243 1586 5.726397 ACTACACGCATCAGTAATTTACCA 58.274 37.500 2.92 0.00 0.00 3.25
1244 1587 6.507456 CGAACTACACGCATCAGTAATTTACC 60.507 42.308 2.92 0.00 0.00 2.85
1250 1593 3.564235 ACGAACTACACGCATCAGTAA 57.436 42.857 0.00 0.00 0.00 2.24
1261 1604 4.091365 CGCATCAGATCAAAACGAACTACA 59.909 41.667 0.00 0.00 0.00 2.74
1264 1607 3.067106 ACGCATCAGATCAAAACGAACT 58.933 40.909 0.00 0.00 0.00 3.01
1324 1668 5.819379 GTCCATCACATCAGACACACATAAT 59.181 40.000 0.00 0.00 0.00 1.28
1354 1698 7.386059 CCAAAAGAATGCAGGTAAAGGTAATT 58.614 34.615 0.00 0.00 0.00 1.40
1359 1703 3.578282 ACCCAAAAGAATGCAGGTAAAGG 59.422 43.478 0.00 0.00 0.00 3.11
1373 1729 1.210155 GCGCAGTAGCACCCAAAAG 59.790 57.895 0.30 0.00 42.27 2.27
1445 1801 6.044682 CCTAAGAAAATCAAATCCATGCACC 58.955 40.000 0.00 0.00 0.00 5.01
1448 1804 7.278646 GGAAACCTAAGAAAATCAAATCCATGC 59.721 37.037 0.00 0.00 0.00 4.06
1525 1882 2.555325 TGTCTGCAGAGAAAAATGCCAG 59.445 45.455 18.89 0.00 41.85 4.85
1526 1883 2.585330 TGTCTGCAGAGAAAAATGCCA 58.415 42.857 18.89 5.13 41.85 4.92
1528 1885 7.383300 AGTTTAATTGTCTGCAGAGAAAAATGC 59.617 33.333 27.77 17.86 42.86 3.56
1529 1886 8.697067 CAGTTTAATTGTCTGCAGAGAAAAATG 58.303 33.333 27.77 21.65 28.74 2.32
1531 1888 7.147915 ACCAGTTTAATTGTCTGCAGAGAAAAA 60.148 33.333 27.77 21.06 28.74 1.94
1532 1889 6.321181 ACCAGTTTAATTGTCTGCAGAGAAAA 59.679 34.615 27.77 16.80 30.91 2.29
1533 1890 5.827797 ACCAGTTTAATTGTCTGCAGAGAAA 59.172 36.000 27.77 19.97 30.91 2.52
1534 1891 5.239306 CACCAGTTTAATTGTCTGCAGAGAA 59.761 40.000 26.49 26.49 0.00 2.87
1535 1892 4.756642 CACCAGTTTAATTGTCTGCAGAGA 59.243 41.667 18.89 14.32 0.00 3.10
1536 1893 4.614535 GCACCAGTTTAATTGTCTGCAGAG 60.615 45.833 18.89 2.95 0.00 3.35
1537 1894 3.253188 GCACCAGTTTAATTGTCTGCAGA 59.747 43.478 13.74 13.74 0.00 4.26
1538 1895 3.568538 GCACCAGTTTAATTGTCTGCAG 58.431 45.455 7.63 7.63 0.00 4.41
1539 1896 2.031245 CGCACCAGTTTAATTGTCTGCA 60.031 45.455 7.67 0.00 0.00 4.41
1540 1897 2.225491 TCGCACCAGTTTAATTGTCTGC 59.775 45.455 0.00 0.00 0.00 4.26
1541 1898 3.498397 ACTCGCACCAGTTTAATTGTCTG 59.502 43.478 0.00 0.00 0.00 3.51
1542 1899 3.740115 ACTCGCACCAGTTTAATTGTCT 58.260 40.909 0.00 0.00 0.00 3.41
1543 1900 5.121768 ACATACTCGCACCAGTTTAATTGTC 59.878 40.000 0.00 0.00 0.00 3.18
1544 1901 5.001232 ACATACTCGCACCAGTTTAATTGT 58.999 37.500 0.00 0.00 0.00 2.71
1545 1902 5.545658 ACATACTCGCACCAGTTTAATTG 57.454 39.130 0.00 0.00 0.00 2.32
1546 1903 6.430000 AGAAACATACTCGCACCAGTTTAATT 59.570 34.615 0.00 0.00 30.23 1.40
1547 1904 5.938125 AGAAACATACTCGCACCAGTTTAAT 59.062 36.000 0.00 0.00 30.23 1.40
1548 1905 5.178623 CAGAAACATACTCGCACCAGTTTAA 59.821 40.000 0.00 0.00 30.23 1.52
1549 1906 4.688879 CAGAAACATACTCGCACCAGTTTA 59.311 41.667 0.00 0.00 30.23 2.01
1550 1907 3.498397 CAGAAACATACTCGCACCAGTTT 59.502 43.478 0.00 0.00 32.48 2.66
1551 1908 3.067106 CAGAAACATACTCGCACCAGTT 58.933 45.455 0.00 0.00 0.00 3.16
1552 1909 2.688507 CAGAAACATACTCGCACCAGT 58.311 47.619 0.00 0.00 0.00 4.00
1553 1910 1.394917 GCAGAAACATACTCGCACCAG 59.605 52.381 0.00 0.00 0.00 4.00
1760 2124 5.043189 ACTAATTAAAGCGAGTTGGTTGC 57.957 39.130 0.00 0.00 38.56 4.17
1784 2148 4.178540 TCGTAGTTAGCCTGTAATTGCAC 58.821 43.478 0.00 0.00 0.00 4.57
1818 2182 2.003301 GCATTCGAGTGGAAGGAACTC 58.997 52.381 10.16 0.00 38.49 3.01
1819 2183 1.673033 CGCATTCGAGTGGAAGGAACT 60.673 52.381 10.16 0.00 38.70 3.01
1820 2184 0.721718 CGCATTCGAGTGGAAGGAAC 59.278 55.000 10.16 0.00 38.70 3.62
1821 2185 0.391130 CCGCATTCGAGTGGAAGGAA 60.391 55.000 10.16 0.00 41.75 3.36
1827 2191 1.156736 AAAGTTCCGCATTCGAGTGG 58.843 50.000 10.16 3.93 40.55 4.00
1875 2239 1.524961 GGATGCACCCATACCACGA 59.475 57.895 0.00 0.00 0.00 4.35
1877 2241 1.095228 CACGGATGCACCCATACCAC 61.095 60.000 0.00 0.00 34.64 4.16
2007 2371 7.029563 CACACTTTAAAATGATAGGCCACTTC 58.970 38.462 5.01 0.00 0.00 3.01
2008 2372 6.719370 TCACACTTTAAAATGATAGGCCACTT 59.281 34.615 5.01 0.00 0.00 3.16
2009 2373 6.245408 TCACACTTTAAAATGATAGGCCACT 58.755 36.000 5.01 0.00 0.00 4.00
2011 2375 5.125417 GCTCACACTTTAAAATGATAGGCCA 59.875 40.000 5.01 0.00 0.00 5.36
2014 2378 7.094634 ACACAGCTCACACTTTAAAATGATAGG 60.095 37.037 3.24 0.00 0.00 2.57
2015 2379 7.810658 ACACAGCTCACACTTTAAAATGATAG 58.189 34.615 3.24 1.70 0.00 2.08
2016 2380 7.744087 ACACAGCTCACACTTTAAAATGATA 57.256 32.000 3.24 0.00 0.00 2.15
2139 2506 0.812549 TGCATAGACCAAGCGTCGTA 59.187 50.000 0.00 0.00 46.92 3.43
2213 2580 4.017808 GGTCTGTACATGTACCAGAGAGT 58.982 47.826 28.67 0.00 35.26 3.24
2320 2687 6.748132 TCAAAGATAAAAAGACCTTTGCCTG 58.252 36.000 0.00 0.00 42.89 4.85
2373 2740 0.868406 AGTTAACACGCTTGCTCAGC 59.132 50.000 8.61 0.00 46.31 4.26
2437 2804 8.752766 ATGAGCATTTCAAGTTCATAAAACTG 57.247 30.769 0.00 0.00 39.77 3.16
2464 2831 8.059461 CCTCCTAACCCTAGGTTTTTCATAAAT 58.941 37.037 8.29 0.00 44.33 1.40
2515 2882 0.954452 AAGCAAGAGCAAAACCTCCG 59.046 50.000 0.00 0.00 45.49 4.63
2526 2893 5.175126 CACAATTTGAGCAGAAAAGCAAGAG 59.825 40.000 2.79 0.00 36.85 2.85
2545 2912 2.573083 CCAACCAAGGCGCCACAAT 61.573 57.895 31.54 8.54 0.00 2.71
2546 2913 2.992817 ATCCAACCAAGGCGCCACAA 62.993 55.000 31.54 4.91 0.00 3.33
2554 2921 4.407365 AGGAAGTGTAAATCCAACCAAGG 58.593 43.478 0.00 0.00 38.23 3.61
2567 2934 3.515502 ACAGCAGCATAGAAGGAAGTGTA 59.484 43.478 0.00 0.00 0.00 2.90
2586 2953 3.002656 CAGCTTGTAGTTTGTGGTGACAG 59.997 47.826 0.00 0.00 44.46 3.51
2621 2988 2.352519 GGAGTCGGGAGTGTACTTGTTC 60.353 54.545 0.00 0.00 0.00 3.18
2636 3003 1.409427 GAGTAATGACCTGGGGAGTCG 59.591 57.143 0.00 0.00 37.04 4.18
2687 3086 7.595604 ACACTAGAGCTAAAACTAGACAAGAC 58.404 38.462 12.76 0.00 39.25 3.01
2689 3088 7.868415 ACAACACTAGAGCTAAAACTAGACAAG 59.132 37.037 12.76 4.46 39.25 3.16
2705 3104 4.565166 CGAACACTGACAAACAACACTAGA 59.435 41.667 0.00 0.00 0.00 2.43
2712 3111 3.075148 TGAACCGAACACTGACAAACAA 58.925 40.909 0.00 0.00 0.00 2.83
2725 3124 3.822940 ACCAAACATAACCTGAACCGAA 58.177 40.909 0.00 0.00 0.00 4.30
2873 3272 2.093711 ACCACCTGCCAGAAACAAAAAC 60.094 45.455 0.00 0.00 0.00 2.43
2874 3273 2.183679 ACCACCTGCCAGAAACAAAAA 58.816 42.857 0.00 0.00 0.00 1.94
2879 3280 1.109323 AGCAACCACCTGCCAGAAAC 61.109 55.000 0.00 0.00 43.73 2.78
2882 3283 1.578897 TATAGCAACCACCTGCCAGA 58.421 50.000 0.00 0.00 43.73 3.86
2883 3284 2.017049 GTTATAGCAACCACCTGCCAG 58.983 52.381 0.00 0.00 43.73 4.85
3081 3482 7.130963 ACCGATAAGGCCTGATAAACAGAAAG 61.131 42.308 5.69 0.00 46.16 2.62
3519 4209 9.869757 ACCATGGCTATAACAAAAGAATAAAAC 57.130 29.630 13.04 0.00 0.00 2.43
3721 4411 4.160814 ACATTATGCTGCACATGGACAAAT 59.839 37.500 21.42 0.45 40.06 2.32
3795 4488 7.458038 AATAAGTGCCGTTGTTTTGTTTTAG 57.542 32.000 0.00 0.00 0.00 1.85
3796 4489 7.829378 AAATAAGTGCCGTTGTTTTGTTTTA 57.171 28.000 0.00 0.00 0.00 1.52
3798 4491 6.402658 CCAAAATAAGTGCCGTTGTTTTGTTT 60.403 34.615 19.57 0.00 42.46 2.83
3799 4492 5.064071 CCAAAATAAGTGCCGTTGTTTTGTT 59.936 36.000 19.57 0.00 42.46 2.83
3800 4493 4.568760 CCAAAATAAGTGCCGTTGTTTTGT 59.431 37.500 19.57 0.00 42.46 2.83
3801 4494 4.806247 TCCAAAATAAGTGCCGTTGTTTTG 59.194 37.500 16.65 16.65 43.09 2.44
3802 4495 5.012328 TCCAAAATAAGTGCCGTTGTTTT 57.988 34.783 0.00 0.00 32.72 2.43
3803 4496 4.657436 TCCAAAATAAGTGCCGTTGTTT 57.343 36.364 0.00 0.00 0.00 2.83
3804 4497 4.364860 GTTCCAAAATAAGTGCCGTTGTT 58.635 39.130 0.00 0.00 0.00 2.83
3805 4498 3.549221 CGTTCCAAAATAAGTGCCGTTGT 60.549 43.478 0.00 0.00 0.00 3.32
3806 4499 2.977169 CGTTCCAAAATAAGTGCCGTTG 59.023 45.455 0.00 0.00 0.00 4.10
3807 4500 2.030628 CCGTTCCAAAATAAGTGCCGTT 60.031 45.455 0.00 0.00 0.00 4.44
3811 4504 2.163613 CCCTCCGTTCCAAAATAAGTGC 59.836 50.000 0.00 0.00 0.00 4.40
3922 4615 1.474077 CAAAGGCAGATGCACCTAACC 59.526 52.381 7.19 0.00 44.36 2.85
3928 4621 0.110056 CACGACAAAGGCAGATGCAC 60.110 55.000 7.19 0.00 44.36 4.57
3982 4675 3.679502 GCTGATTTGTGTTGGGCATTTAC 59.320 43.478 0.00 0.00 0.00 2.01
4096 4789 2.159572 CGGCCGTCTTATTTTCAACAGG 60.160 50.000 19.50 0.00 0.00 4.00
4115 4808 3.433615 CACTCCTCTTTGCTTCTTTACGG 59.566 47.826 0.00 0.00 0.00 4.02
4117 4810 4.693095 CCTCACTCCTCTTTGCTTCTTTAC 59.307 45.833 0.00 0.00 0.00 2.01
4178 4871 7.775093 AGACAGAATAAATTGTAGCTGCCAATA 59.225 33.333 12.25 1.34 32.40 1.90
4338 5032 3.751479 ACACAAAGGAAAGGGCATTTC 57.249 42.857 15.79 15.79 45.60 2.17
4339 5033 5.306678 TCAATACACAAAGGAAAGGGCATTT 59.693 36.000 0.00 0.00 0.00 2.32
4340 5034 4.837860 TCAATACACAAAGGAAAGGGCATT 59.162 37.500 0.00 0.00 0.00 3.56
4341 5035 4.415596 TCAATACACAAAGGAAAGGGCAT 58.584 39.130 0.00 0.00 0.00 4.40
4342 5036 3.838565 TCAATACACAAAGGAAAGGGCA 58.161 40.909 0.00 0.00 0.00 5.36
4343 5037 4.864704 TTCAATACACAAAGGAAAGGGC 57.135 40.909 0.00 0.00 0.00 5.19
4344 5038 5.639082 GCATTTCAATACACAAAGGAAAGGG 59.361 40.000 0.00 0.00 31.94 3.95
4345 5039 5.639082 GGCATTTCAATACACAAAGGAAAGG 59.361 40.000 0.00 0.00 33.75 3.11
4346 5040 5.639082 GGGCATTTCAATACACAAAGGAAAG 59.361 40.000 0.00 0.00 31.76 2.62
4347 5041 5.306678 AGGGCATTTCAATACACAAAGGAAA 59.693 36.000 0.00 0.00 32.66 3.13
4348 5042 4.837860 AGGGCATTTCAATACACAAAGGAA 59.162 37.500 0.00 0.00 0.00 3.36
4349 5043 4.415596 AGGGCATTTCAATACACAAAGGA 58.584 39.130 0.00 0.00 0.00 3.36
4350 5044 4.806640 AGGGCATTTCAATACACAAAGG 57.193 40.909 0.00 0.00 0.00 3.11
4351 5045 6.710692 GAAAGGGCATTTCAATACACAAAG 57.289 37.500 18.78 0.00 45.63 2.77
4474 5168 9.593134 AGACTGAATGAACTACATAATCTTCAC 57.407 33.333 0.00 0.00 38.38 3.18
4691 5385 8.964420 ACGAAAATGTACAATTAGAAACATGG 57.036 30.769 0.00 0.00 33.04 3.66
4739 5433 3.084039 CACAGCAATACCAACTCCACAT 58.916 45.455 0.00 0.00 0.00 3.21
4754 5448 1.374560 AGCAACGTACAAACACAGCA 58.625 45.000 0.00 0.00 0.00 4.41
4797 5491 3.055891 CCCAGCTTTTCCCCTATTTGTTG 60.056 47.826 0.00 0.00 0.00 3.33
4861 5555 7.136772 ACAAGATAAGAAAAAGGCGTTAACAC 58.863 34.615 6.39 0.00 0.00 3.32
4907 5601 5.416271 AGTACTTACGGTGACATCCAAAT 57.584 39.130 0.00 0.00 0.00 2.32
4915 5609 9.369904 TGGATATTTTAAAGTACTTACGGTGAC 57.630 33.333 8.92 0.00 0.00 3.67
4943 5637 5.415701 ACCTTACAAAGATCGCACAATGAAT 59.584 36.000 0.00 0.00 0.00 2.57
4955 5649 6.899393 TTTGATTCTGCACCTTACAAAGAT 57.101 33.333 0.00 0.00 0.00 2.40
5011 5705 4.040755 ACTAAGTCAATACCCTGCCTCAT 58.959 43.478 0.00 0.00 0.00 2.90
5067 5761 3.651803 AGAAACTCTGTTCTGTCCTCG 57.348 47.619 0.00 0.00 36.48 4.63
5107 5801 1.806542 CAGTGGCAGCGTTTATGTTCT 59.193 47.619 0.00 0.00 0.00 3.01
5109 5803 0.240945 GCAGTGGCAGCGTTTATGTT 59.759 50.000 0.00 0.00 40.72 2.71
5189 5884 6.434028 ACAGTACTAACCATGCAAAATGATGT 59.566 34.615 0.00 0.00 0.00 3.06
5249 5944 9.640963 ACTAGCTCAATTTAAAGTACTGTACTG 57.359 33.333 20.34 7.83 39.39 2.74
5310 6009 9.203421 CTTATGGTGTTATATACTTCAATGCGA 57.797 33.333 0.00 0.00 0.00 5.10
5311 6010 7.957484 GCTTATGGTGTTATATACTTCAATGCG 59.043 37.037 0.00 0.00 0.00 4.73
5355 6055 9.587772 CCATGTTATATACTCTAATACAGTGCC 57.412 37.037 0.00 0.00 0.00 5.01
5580 6280 4.574674 AGTTGTGATGCCCTGAGAAATA 57.425 40.909 0.00 0.00 0.00 1.40
5585 6285 3.877559 TCATAAGTTGTGATGCCCTGAG 58.122 45.455 0.00 0.00 0.00 3.35
5727 6427 1.147376 ACCTTTGTAGTGCCGTGCA 59.853 52.632 0.00 0.00 35.60 4.57
5805 6505 5.378230 TGATACGACCTAGAAGGGTAGAA 57.622 43.478 0.00 0.00 40.58 2.10
5810 6510 3.700038 ACAGTTGATACGACCTAGAAGGG 59.300 47.826 0.00 0.00 40.58 3.95
5834 6534 7.908193 AGTTGATTTTGTTTAGCAAACTACG 57.092 32.000 11.34 0.00 45.70 3.51
5847 6547 8.352942 GTTCACTCTATGGAAAGTTGATTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
5878 6578 4.129380 CAGTGAGAGAAACATGAACACCA 58.871 43.478 0.00 0.00 0.00 4.17
5894 6594 4.482386 CAAATTGATGTGCTTCCAGTGAG 58.518 43.478 0.00 0.00 0.00 3.51
6131 6834 2.783135 TCAGGATCAACAGTTGAAGGC 58.217 47.619 19.92 11.85 43.95 4.35
6230 6933 2.488204 TCATGGCCTCGTTTGAATCA 57.512 45.000 3.32 0.00 0.00 2.57
6254 6957 2.273912 GGCTCTGGCTTTTGCTGCT 61.274 57.895 0.00 0.00 46.54 4.24
6293 6996 4.102524 TCATACTGGGAACGGCTATTGATT 59.897 41.667 0.00 0.00 41.93 2.57
6311 7014 0.179073 AGCACTGGTCGGCATCATAC 60.179 55.000 0.00 0.00 0.00 2.39
6314 7017 2.265739 GAGCACTGGTCGGCATCA 59.734 61.111 0.00 0.00 0.00 3.07
6317 7020 4.007644 CTGGAGCACTGGTCGGCA 62.008 66.667 2.19 0.00 0.00 5.69
6377 7080 1.192312 CGAGTGTCGATGTGGTTGTTG 59.808 52.381 0.00 0.00 43.74 3.33
6440 7143 5.673514 TCAATGTCATCTGCACTTGCTATA 58.326 37.500 2.33 0.00 42.66 1.31
6470 7173 2.667418 CTGCTGGGTGTCTGAGGG 59.333 66.667 0.00 0.00 0.00 4.30
6518 7221 1.141657 GAGGGATGGTGCTCTGCAATA 59.858 52.381 0.00 0.00 41.47 1.90
6539 7242 6.664816 TCTGATAGATTGGGTTGAAATGCTTT 59.335 34.615 0.00 0.00 0.00 3.51
6598 7301 1.334869 CTGGTATGGCCGCTTCATTTC 59.665 52.381 0.00 0.00 41.21 2.17
6611 7314 1.135689 GCGTTGTTGGCTTCTGGTATG 60.136 52.381 0.00 0.00 0.00 2.39
6788 7491 2.187946 GCCATCAGAGGTCCACCG 59.812 66.667 0.00 0.00 42.08 4.94
6818 7521 2.873649 GCCAGGGTCTCTGAAACTTCTG 60.874 54.545 0.00 0.00 46.18 3.02
6908 7611 3.561313 GCAACTTGGGGAGGTGATCTTTA 60.561 47.826 0.00 0.00 46.51 1.85
6962 7665 1.141657 AGCAGAGAAACAGGTGCTTCA 59.858 47.619 0.00 0.00 43.80 3.02
7010 7713 3.049708 TGTCTGATGCAAGAACTGAGG 57.950 47.619 0.00 0.00 0.00 3.86
7096 7799 9.780413 GATAAACAAAAGAGACTTCATGATTCC 57.220 33.333 0.00 0.00 0.00 3.01
7143 7846 4.040952 CGATTATCCCCTTCTCATCCAACT 59.959 45.833 0.00 0.00 0.00 3.16
7263 7973 7.496346 AGGGTTGTTGATATTTCAGACTCTA 57.504 36.000 0.00 0.00 32.27 2.43
7302 8027 6.425210 AGGTTAATGATCCATCGAAGATGA 57.575 37.500 11.22 0.00 45.12 2.92
7395 8154 4.775253 CCTAAACAAGATGCCCCCTAAAAA 59.225 41.667 0.00 0.00 0.00 1.94
7396 8155 4.202738 ACCTAAACAAGATGCCCCCTAAAA 60.203 41.667 0.00 0.00 0.00 1.52
7397 8156 3.335484 ACCTAAACAAGATGCCCCCTAAA 59.665 43.478 0.00 0.00 0.00 1.85
7398 8157 2.923629 ACCTAAACAAGATGCCCCCTAA 59.076 45.455 0.00 0.00 0.00 2.69
7399 8158 2.241176 CACCTAAACAAGATGCCCCCTA 59.759 50.000 0.00 0.00 0.00 3.53
7400 8159 1.005924 CACCTAAACAAGATGCCCCCT 59.994 52.381 0.00 0.00 0.00 4.79
7401 8160 1.474330 CACCTAAACAAGATGCCCCC 58.526 55.000 0.00 0.00 0.00 5.40
7402 8161 1.005450 TCCACCTAAACAAGATGCCCC 59.995 52.381 0.00 0.00 0.00 5.80
7403 8162 2.492088 GTTCCACCTAAACAAGATGCCC 59.508 50.000 0.00 0.00 0.00 5.36
7404 8163 2.492088 GGTTCCACCTAAACAAGATGCC 59.508 50.000 0.00 0.00 34.73 4.40
7405 8164 3.850122 GGTTCCACCTAAACAAGATGC 57.150 47.619 0.00 0.00 34.73 3.91
7414 8173 8.356271 ACTTAGGAAAGTACAGGTTCCACCTAA 61.356 40.741 19.38 0.00 45.05 2.69
7415 8174 6.925751 ACTTAGGAAAGTACAGGTTCCACCTA 60.926 42.308 19.38 0.00 45.05 3.08
7416 8175 6.171764 ACTTAGGAAAGTACAGGTTCCACCT 61.172 44.000 19.38 0.00 46.58 4.00
7417 8176 4.041321 ACTTAGGAAAGTACAGGTTCCACC 59.959 45.833 19.38 0.00 44.26 4.61
7418 8177 4.995487 CACTTAGGAAAGTACAGGTTCCAC 59.005 45.833 19.38 1.08 44.28 4.02
7523 8298 7.015877 GCTGAAAAATTTAGACAACTACTCCG 58.984 38.462 0.00 0.00 0.00 4.63
7524 8299 7.015877 CGCTGAAAAATTTAGACAACTACTCC 58.984 38.462 0.00 0.00 0.00 3.85
7525 8300 7.793902 TCGCTGAAAAATTTAGACAACTACTC 58.206 34.615 0.00 0.00 0.00 2.59
7527 8302 8.950403 AATCGCTGAAAAATTTAGACAACTAC 57.050 30.769 0.00 0.00 0.00 2.73
7528 8303 8.779303 TGAATCGCTGAAAAATTTAGACAACTA 58.221 29.630 0.00 0.00 0.00 2.24
7531 8306 7.648142 ACTGAATCGCTGAAAAATTTAGACAA 58.352 30.769 0.00 0.00 0.00 3.18
7532 8307 7.202016 ACTGAATCGCTGAAAAATTTAGACA 57.798 32.000 0.00 0.00 0.00 3.41
7533 8308 9.052080 GTAACTGAATCGCTGAAAAATTTAGAC 57.948 33.333 0.00 0.00 0.00 2.59
7534 8309 8.779303 TGTAACTGAATCGCTGAAAAATTTAGA 58.221 29.630 0.00 0.00 0.00 2.10
7535 8310 8.840867 GTGTAACTGAATCGCTGAAAAATTTAG 58.159 33.333 0.00 0.00 0.00 1.85
7536 8311 8.722342 GTGTAACTGAATCGCTGAAAAATTTA 57.278 30.769 0.00 0.00 0.00 1.40
7537 8312 7.623268 GTGTAACTGAATCGCTGAAAAATTT 57.377 32.000 0.00 0.00 0.00 1.82
7557 8536 4.159244 ACCAAGGTGCAAGTTTAGTGTA 57.841 40.909 0.00 0.00 0.00 2.90
7581 8560 2.028748 TCCCAGACGTACAGTTTTAGGC 60.029 50.000 0.00 0.00 0.00 3.93
7589 8568 1.136891 TGCATGATCCCAGACGTACAG 59.863 52.381 0.00 0.00 0.00 2.74
7594 8573 1.742761 AAGTTGCATGATCCCAGACG 58.257 50.000 0.00 0.00 0.00 4.18
7653 8632 1.065418 GTCCAACCGTTCCCATCTCAT 60.065 52.381 0.00 0.00 0.00 2.90
7665 8644 1.997606 GTTAGGATCAACGTCCAACCG 59.002 52.381 0.00 0.00 40.90 4.44
7710 8689 8.332996 CTGTAAGCTGCCTGAAATATTCATAT 57.667 34.615 0.00 0.00 39.30 1.78
7745 8724 6.430925 TGAGTACATTCTTGATTGGGACTTTG 59.569 38.462 0.00 0.00 0.00 2.77
7746 8725 6.431234 GTGAGTACATTCTTGATTGGGACTTT 59.569 38.462 0.00 0.00 0.00 2.66
7747 8726 5.940470 GTGAGTACATTCTTGATTGGGACTT 59.060 40.000 0.00 0.00 0.00 3.01
7748 8727 5.491982 GTGAGTACATTCTTGATTGGGACT 58.508 41.667 0.00 0.00 0.00 3.85
7749 8728 4.636206 GGTGAGTACATTCTTGATTGGGAC 59.364 45.833 0.00 0.00 0.00 4.46
7750 8729 4.536090 AGGTGAGTACATTCTTGATTGGGA 59.464 41.667 0.00 0.00 0.00 4.37
7751 8730 4.848357 AGGTGAGTACATTCTTGATTGGG 58.152 43.478 0.00 0.00 0.00 4.12
7752 8731 6.824305 AAAGGTGAGTACATTCTTGATTGG 57.176 37.500 0.00 0.00 29.27 3.16
7753 8732 7.017645 CGAAAAGGTGAGTACATTCTTGATTG 58.982 38.462 0.00 0.00 29.27 2.67
7803 8785 0.179140 CTGAGAGCGAGACAGAAGGC 60.179 60.000 0.00 0.00 34.07 4.35
7815 8797 8.244494 TGCGTTTTATGATATATTCTGAGAGC 57.756 34.615 0.00 0.00 0.00 4.09
7840 8822 6.560253 AGCATTGTCTTAACGAGTCAAAAT 57.440 33.333 0.00 0.00 37.06 1.82
7841 8823 6.371809 AAGCATTGTCTTAACGAGTCAAAA 57.628 33.333 0.00 0.00 37.06 2.44
7842 8824 6.371809 AAAGCATTGTCTTAACGAGTCAAA 57.628 33.333 0.00 0.00 37.06 2.69
7843 8825 7.349711 GTTAAAGCATTGTCTTAACGAGTCAA 58.650 34.615 0.00 0.00 37.71 3.18
7844 8826 6.073440 GGTTAAAGCATTGTCTTAACGAGTCA 60.073 38.462 12.55 0.00 0.00 3.41
7845 8827 6.073440 TGGTTAAAGCATTGTCTTAACGAGTC 60.073 38.462 12.55 0.00 0.00 3.36
7846 8828 5.761234 TGGTTAAAGCATTGTCTTAACGAGT 59.239 36.000 12.55 0.00 0.00 4.18
7847 8829 6.236017 TGGTTAAAGCATTGTCTTAACGAG 57.764 37.500 12.55 0.00 0.00 4.18
7848 8830 6.621316 TTGGTTAAAGCATTGTCTTAACGA 57.379 33.333 12.55 8.71 0.00 3.85
7849 8831 8.958175 TTATTGGTTAAAGCATTGTCTTAACG 57.042 30.769 12.55 0.00 0.00 3.18
7853 8835 8.806146 ACTGATTATTGGTTAAAGCATTGTCTT 58.194 29.630 0.00 0.00 0.00 3.01
7854 8836 8.353423 ACTGATTATTGGTTAAAGCATTGTCT 57.647 30.769 0.00 0.00 0.00 3.41
7855 8837 8.986477 AACTGATTATTGGTTAAAGCATTGTC 57.014 30.769 0.00 0.00 0.00 3.18
7856 8838 9.206870 CAAACTGATTATTGGTTAAAGCATTGT 57.793 29.630 0.00 0.00 0.00 2.71
7857 8839 9.206870 ACAAACTGATTATTGGTTAAAGCATTG 57.793 29.630 0.00 0.00 0.00 2.82
7858 8840 9.423061 GACAAACTGATTATTGGTTAAAGCATT 57.577 29.630 0.00 0.00 0.00 3.56
7859 8841 8.584157 TGACAAACTGATTATTGGTTAAAGCAT 58.416 29.630 0.00 0.00 0.00 3.79
7860 8842 7.946207 TGACAAACTGATTATTGGTTAAAGCA 58.054 30.769 0.00 0.00 0.00 3.91
7861 8843 8.986477 ATGACAAACTGATTATTGGTTAAAGC 57.014 30.769 0.00 0.00 0.00 3.51
7866 8848 9.859427 CACATAATGACAAACTGATTATTGGTT 57.141 29.630 0.00 0.00 0.00 3.67
7867 8849 9.023962 ACACATAATGACAAACTGATTATTGGT 57.976 29.630 0.00 0.00 0.00 3.67
7868 8850 9.507280 GACACATAATGACAAACTGATTATTGG 57.493 33.333 0.00 0.00 0.00 3.16
7869 8851 9.507280 GGACACATAATGACAAACTGATTATTG 57.493 33.333 0.00 0.00 0.00 1.90
7870 8852 9.466497 AGGACACATAATGACAAACTGATTATT 57.534 29.630 0.00 0.00 0.00 1.40
7871 8853 9.113838 GAGGACACATAATGACAAACTGATTAT 57.886 33.333 0.00 0.00 0.00 1.28
7872 8854 7.277760 CGAGGACACATAATGACAAACTGATTA 59.722 37.037 0.00 0.00 0.00 1.75
7873 8855 6.092670 CGAGGACACATAATGACAAACTGATT 59.907 38.462 0.00 0.00 0.00 2.57
7874 8856 5.582269 CGAGGACACATAATGACAAACTGAT 59.418 40.000 0.00 0.00 0.00 2.90
7875 8857 4.929211 CGAGGACACATAATGACAAACTGA 59.071 41.667 0.00 0.00 0.00 3.41
7876 8858 4.690748 ACGAGGACACATAATGACAAACTG 59.309 41.667 0.00 0.00 0.00 3.16
7877 8859 4.690748 CACGAGGACACATAATGACAAACT 59.309 41.667 0.00 0.00 0.00 2.66
7878 8860 4.451096 ACACGAGGACACATAATGACAAAC 59.549 41.667 0.00 0.00 0.00 2.93
7879 8861 4.450757 CACACGAGGACACATAATGACAAA 59.549 41.667 0.00 0.00 0.00 2.83
7880 8862 3.993736 CACACGAGGACACATAATGACAA 59.006 43.478 0.00 0.00 0.00 3.18
7881 8863 3.257127 TCACACGAGGACACATAATGACA 59.743 43.478 0.00 0.00 0.00 3.58
7882 8864 3.845178 TCACACGAGGACACATAATGAC 58.155 45.455 0.00 0.00 0.00 3.06
7883 8865 4.736126 ATCACACGAGGACACATAATGA 57.264 40.909 0.00 0.00 0.00 2.57
7884 8866 5.592054 ACTATCACACGAGGACACATAATG 58.408 41.667 0.00 0.00 0.00 1.90
7885 8867 5.854010 ACTATCACACGAGGACACATAAT 57.146 39.130 0.00 0.00 0.00 1.28
7886 8868 6.544564 TCATACTATCACACGAGGACACATAA 59.455 38.462 0.00 0.00 0.00 1.90
7887 8869 6.059484 TCATACTATCACACGAGGACACATA 58.941 40.000 0.00 0.00 0.00 2.29
7888 8870 4.887655 TCATACTATCACACGAGGACACAT 59.112 41.667 0.00 0.00 0.00 3.21
7889 8871 4.266714 TCATACTATCACACGAGGACACA 58.733 43.478 0.00 0.00 0.00 3.72
7890 8872 4.895224 TCATACTATCACACGAGGACAC 57.105 45.455 0.00 0.00 0.00 3.67
7891 8873 8.857694 TTATATCATACTATCACACGAGGACA 57.142 34.615 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.