Multiple sequence alignment - TraesCS2D01G455500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G455500 chr2D 100.000 8626 0 0 1 8626 563785753 563794378 0.000000e+00 15930.0
1 TraesCS2D01G455500 chr2A 94.974 4596 151 33 4027 8599 703872007 703876545 0.000000e+00 7134.0
2 TraesCS2D01G455500 chr2A 96.392 3548 98 20 1 3541 703868022 703871546 0.000000e+00 5816.0
3 TraesCS2D01G455500 chr2A 98.073 467 7 2 3600 4065 703871542 703872007 0.000000e+00 811.0
4 TraesCS2D01G455500 chr2A 100.000 65 0 0 3541 3605 83891918 83891982 4.230000e-23 121.0
5 TraesCS2D01G455500 chr2B 94.547 2824 105 23 723 3541 674029903 674032682 0.000000e+00 4316.0
6 TraesCS2D01G455500 chr2B 94.533 1811 65 13 6793 8597 674035389 674037171 0.000000e+00 2765.0
7 TraesCS2D01G455500 chr2B 96.774 651 15 4 3600 4248 674032678 674033324 0.000000e+00 1081.0
8 TraesCS2D01G455500 chr2B 92.098 734 34 10 1 726 674029142 674029859 0.000000e+00 1013.0
9 TraesCS2D01G455500 chr2B 92.910 677 19 5 4802 5474 674034038 674034689 0.000000e+00 957.0
10 TraesCS2D01G455500 chr2B 91.786 560 28 7 4247 4803 674033400 674033944 0.000000e+00 763.0
11 TraesCS2D01G455500 chr2B 94.536 183 9 1 6026 6207 674035211 674035393 1.830000e-71 281.0
12 TraesCS2D01G455500 chr2B 91.534 189 15 1 5526 5714 674035024 674035211 8.590000e-65 259.0
13 TraesCS2D01G455500 chr2B 91.463 82 3 4 3541 3619 238956424 238956344 9.160000e-20 110.0
14 TraesCS2D01G455500 chr2B 85.047 107 13 3 5943 6048 674035104 674035208 1.180000e-18 106.0
15 TraesCS2D01G455500 chr3B 92.670 573 36 5 1846 2415 133770989 133771558 0.000000e+00 821.0
16 TraesCS2D01G455500 chr3B 88.468 633 59 11 6109 6736 133774532 133775155 0.000000e+00 752.0
17 TraesCS2D01G455500 chr3B 92.340 470 21 9 2976 3439 133772575 133773035 0.000000e+00 654.0
18 TraesCS2D01G455500 chr3B 91.283 413 29 4 3600 4010 133773377 133773784 2.720000e-154 556.0
19 TraesCS2D01G455500 chr3B 90.950 221 17 1 2693 2910 133771711 133771931 2.350000e-75 294.0
20 TraesCS2D01G455500 chr3B 87.281 228 21 5 5541 5763 133774081 133774305 4.000000e-63 254.0
21 TraesCS2D01G455500 chr3B 93.082 159 8 3 2491 2647 133771560 133771717 6.740000e-56 230.0
22 TraesCS2D01G455500 chr3B 89.524 105 8 2 5182 5286 133773781 133773882 7.030000e-26 130.0
23 TraesCS2D01G455500 chr3B 98.507 67 1 0 3541 3607 78536909 78536975 1.520000e-22 119.0
24 TraesCS2D01G455500 chr3B 100.000 29 0 0 6727 6755 133775167 133775195 4.000000e-03 54.7
25 TraesCS2D01G455500 chr4A 100.000 65 0 0 3541 3605 438239497 438239433 4.230000e-23 121.0
26 TraesCS2D01G455500 chr4B 97.143 70 1 1 3541 3610 217278104 217278172 5.470000e-22 117.0
27 TraesCS2D01G455500 chr4B 93.506 77 3 2 3541 3615 527938818 527938894 7.080000e-21 113.0
28 TraesCS2D01G455500 chr6D 95.833 72 2 1 3541 3611 422907491 422907420 1.970000e-21 115.0
29 TraesCS2D01G455500 chr1B 94.595 74 4 0 3541 3614 133692459 133692532 1.970000e-21 115.0
30 TraesCS2D01G455500 chr3D 93.421 76 3 2 3541 3616 313292417 313292344 2.550000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G455500 chr2D 563785753 563794378 8625 False 15930.000000 15930 100.000000 1 8626 1 chr2D.!!$F1 8625
1 TraesCS2D01G455500 chr2A 703868022 703876545 8523 False 4587.000000 7134 96.479667 1 8599 3 chr2A.!!$F2 8598
2 TraesCS2D01G455500 chr2B 674029142 674037171 8029 False 1282.333333 4316 92.640556 1 8597 9 chr2B.!!$F1 8596
3 TraesCS2D01G455500 chr3B 133770989 133775195 4206 False 416.188889 821 91.733111 1846 6755 9 chr3B.!!$F2 4909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 938 0.398696 TTGTGTATGGGCCGAACTGT 59.601 50.000 0.00 0.00 0.00 3.55 F
1408 1464 0.034089 GATCAGGGTGAGTTTGGGGG 60.034 60.000 0.00 0.00 0.00 5.40 F
1762 1818 0.689412 TGGTGACTGGTGACCACTCA 60.689 55.000 9.49 9.49 41.89 3.41 F
1990 2048 1.235724 GGCAGTCAAACCACTGGTAC 58.764 55.000 0.00 0.00 43.61 3.34 F
2317 2376 1.376683 GCGTGCTCACCCAATACCA 60.377 57.895 0.00 0.00 0.00 3.25 F
3559 4455 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16 F
4273 5288 0.749454 GGCGGAATGCTGAGGAATGT 60.749 55.000 0.00 0.00 45.43 2.71 F
5170 6286 1.131771 GCAAGAGCCTTTTGTTTCGC 58.868 50.000 0.00 0.00 33.58 4.70 F
6115 7687 0.105453 AGTCTGACGGATATGGCCCT 60.105 55.000 0.00 0.00 0.00 5.19 F
7378 8980 1.394917 CTGCCACTTGACGCTCATTAC 59.605 52.381 0.00 0.00 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 2010 1.081892 CCAGACTGTTGGCGATCTTG 58.918 55.000 0.93 0.00 0.00 3.02 R
2416 2476 1.734465 GCAACCATGTGAGCTGTCTAC 59.266 52.381 0.00 0.00 0.00 2.59 R
3540 4436 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85 R
3541 4437 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69 R
4253 5268 1.524621 ATTCCTCAGCATTCCGCCG 60.525 57.895 0.00 0.00 44.04 6.46 R
4521 5537 1.133513 ACTTGTCTTCAATGGGTGCCA 60.134 47.619 0.00 0.00 38.19 4.92 R
6115 7687 0.251787 TGGACTCTGGCAGCTGACTA 60.252 55.000 22.80 8.14 0.00 2.59 R
6987 8587 0.541392 TCTGGCAGCGGTATCACATT 59.459 50.000 10.34 0.00 0.00 2.71 R
7603 9205 0.320073 CACCCGTGACCTTTTAGCGA 60.320 55.000 0.00 0.00 0.00 4.93 R
8323 9938 0.180171 TTGGGCGTATGGATGGACTG 59.820 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 3.881688 GAGAACAGTGGAGCATGCATAAT 59.118 43.478 21.98 0.00 39.99 1.28
312 314 9.465199 TCCTTGAATGATCATGTTTATCTTTCA 57.535 29.630 9.46 14.90 41.74 2.69
489 491 4.250464 CGACCCTCAAATGCAGTTACTTA 58.750 43.478 0.00 0.00 0.00 2.24
716 723 2.311688 CTGCCCATACTGGACCGGTC 62.312 65.000 27.04 27.04 40.96 4.79
882 938 0.398696 TTGTGTATGGGCCGAACTGT 59.601 50.000 0.00 0.00 0.00 3.55
967 1023 2.815647 CTCGCCGCACCCTTTCTC 60.816 66.667 0.00 0.00 0.00 2.87
1308 1364 2.126031 GACCCCGAGCTCGTGTTC 60.126 66.667 32.41 17.74 37.74 3.18
1371 1427 2.563942 GTCGAGCTCAGCGTGTCT 59.436 61.111 15.40 0.00 0.00 3.41
1408 1464 0.034089 GATCAGGGTGAGTTTGGGGG 60.034 60.000 0.00 0.00 0.00 5.40
1455 1511 1.388547 GGCGATGGTGAATTGGCTAA 58.611 50.000 0.00 0.00 41.19 3.09
1458 1514 2.223572 GCGATGGTGAATTGGCTAAAGG 60.224 50.000 0.00 0.00 0.00 3.11
1628 1684 2.073816 GCAGCCAGAAGTAGCGTTTAA 58.926 47.619 0.00 0.00 0.00 1.52
1656 1712 8.482429 GTCTGCTCTTTTATGTGTTTCAAATTG 58.518 33.333 0.00 0.00 0.00 2.32
1681 1737 3.531538 TCAGGTTCATGCTACGAATTCC 58.468 45.455 0.00 0.00 0.00 3.01
1762 1818 0.689412 TGGTGACTGGTGACCACTCA 60.689 55.000 9.49 9.49 41.89 3.41
1807 1863 7.831691 TTGATTACCAGATCCTTGAAAAACA 57.168 32.000 0.00 0.00 0.00 2.83
1990 2048 1.235724 GGCAGTCAAACCACTGGTAC 58.764 55.000 0.00 0.00 43.61 3.34
2057 2115 3.069443 ACAATGTGGTTAAGTTGCCCTTG 59.931 43.478 0.00 0.00 34.46 3.61
2139 2197 7.336931 ACAGGTATACTTCAGGTTTTTATGCAG 59.663 37.037 2.25 0.00 0.00 4.41
2188 2246 9.225436 TGATATAAGTGTGTTAATGCAACTTCA 57.775 29.630 1.12 0.00 38.05 3.02
2264 2323 8.375493 TCCTATCTTAAGGTCTAAACACATGT 57.625 34.615 1.85 0.00 37.91 3.21
2317 2376 1.376683 GCGTGCTCACCCAATACCA 60.377 57.895 0.00 0.00 0.00 3.25
2383 2443 9.433153 GTCAAGCTTTTATAGTTGTACCTTACT 57.567 33.333 0.00 0.00 0.00 2.24
2416 2476 3.221771 TCCAGTTCCAACACCTTGATTG 58.778 45.455 0.00 0.00 0.00 2.67
2465 2525 7.117241 ACATATAGTGTGTTTGTTGTTCTCG 57.883 36.000 0.00 0.00 40.28 4.04
2522 2583 5.059404 GCATTAATGTTGCTTGTGTACCT 57.941 39.130 16.61 0.00 37.14 3.08
2713 2774 7.907214 TTAGTTCTGTTTCTTATGCTCTTCC 57.093 36.000 0.00 0.00 0.00 3.46
3029 3671 8.737175 TGTTAGTGTGTGTATTTGTTTTAACCA 58.263 29.630 0.00 0.00 0.00 3.67
3118 3760 7.701539 TTCATGAAGTAAAATGTACTGGCAT 57.298 32.000 3.38 0.00 0.00 4.40
3455 4351 9.261035 TGCAAGGGGAATTTATTATACAAGAAA 57.739 29.630 0.00 0.00 29.99 2.52
3553 4449 9.972106 TCTAGTTATTATAACCTCTAGCCTACC 57.028 37.037 11.07 0.00 0.00 3.18
3554 4450 9.187996 CTAGTTATTATAACCTCTAGCCTACCC 57.812 40.741 11.07 0.00 0.00 3.69
3555 4451 6.958778 AGTTATTATAACCTCTAGCCTACCCC 59.041 42.308 11.07 0.00 0.00 4.95
3556 4452 4.838105 TTATAACCTCTAGCCTACCCCA 57.162 45.455 0.00 0.00 0.00 4.96
3557 4453 3.719368 ATAACCTCTAGCCTACCCCAA 57.281 47.619 0.00 0.00 0.00 4.12
3558 4454 1.581223 AACCTCTAGCCTACCCCAAC 58.419 55.000 0.00 0.00 0.00 3.77
3559 4455 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
3560 4456 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
3561 4457 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
3562 4458 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
3563 4459 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
3564 4460 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3565 4461 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3576 4472 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
3577 4473 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
3578 4474 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
3579 4475 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
3580 4476 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
3581 4477 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
3582 4478 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
3583 4479 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
3584 4480 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
3585 4481 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
3586 4482 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
3587 4483 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
3588 4484 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
3589 4485 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
3590 4486 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
3591 4487 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
3592 4488 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
3593 4489 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
3594 4490 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3595 4491 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
3596 4492 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
3597 4493 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
3598 4494 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
3632 4528 6.128391 TGCTTGAATTACCGATGTTAGTTGTC 60.128 38.462 0.00 0.00 0.00 3.18
3638 4534 9.530633 GAATTACCGATGTTAGTTGTCTATCTT 57.469 33.333 0.00 0.00 0.00 2.40
3988 4887 4.335594 GGTCAGTGTTCTTGCAAGTAAGTT 59.664 41.667 25.19 7.87 0.00 2.66
4227 5165 2.318908 AGTCCAGCAAAGCCAATTTCA 58.681 42.857 0.00 0.00 0.00 2.69
4231 5169 5.188359 AGTCCAGCAAAGCCAATTTCATTAT 59.812 36.000 0.00 0.00 0.00 1.28
4273 5288 0.749454 GGCGGAATGCTGAGGAATGT 60.749 55.000 0.00 0.00 45.43 2.71
4326 5341 4.935205 ACGATAAGTTTAGCATGCTGTTGA 59.065 37.500 30.42 7.20 0.00 3.18
4442 5458 5.446143 CCTTAAGGTTGTTTGTATGCACA 57.554 39.130 13.83 0.00 0.00 4.57
4443 5459 6.024552 CCTTAAGGTTGTTTGTATGCACAT 57.975 37.500 13.83 0.00 33.76 3.21
4444 5460 7.151999 CCTTAAGGTTGTTTGTATGCACATA 57.848 36.000 13.83 0.00 33.76 2.29
4445 5461 7.598278 CCTTAAGGTTGTTTGTATGCACATAA 58.402 34.615 13.83 0.00 33.76 1.90
4479 5495 1.312815 GCTATGTGATGCCACCTTCC 58.687 55.000 0.00 0.00 42.53 3.46
4521 5537 4.403432 CCATCTATTTTGTCCAGCCATTGT 59.597 41.667 0.00 0.00 0.00 2.71
4522 5538 5.345702 CATCTATTTTGTCCAGCCATTGTG 58.654 41.667 0.00 0.00 0.00 3.33
4544 5560 1.806542 CACCCATTGAAGACAAGTCCG 59.193 52.381 0.00 0.00 39.46 4.79
4637 5653 2.288702 GCAGCGAGTGGATCATATCAGT 60.289 50.000 0.00 0.00 0.00 3.41
4702 5718 3.607741 CAGCCATGGATCTGGATATGAC 58.392 50.000 18.40 0.00 38.69 3.06
4717 5735 9.330063 TCTGGATATGACATCAACTTATTTCAC 57.670 33.333 0.00 0.00 0.00 3.18
5060 6173 3.006323 AGCCTTCATATACGAGCTCTTGG 59.994 47.826 12.85 0.00 0.00 3.61
5170 6286 1.131771 GCAAGAGCCTTTTGTTTCGC 58.868 50.000 0.00 0.00 33.58 4.70
5184 6300 7.907563 CCTTTTGTTTCGCAATTATTTTTGTGT 59.092 29.630 0.00 0.00 38.10 3.72
5698 7266 8.269317 ACTAACCGGATTTAGGACATTGATTAA 58.731 33.333 9.46 0.00 33.92 1.40
5704 7272 7.573843 CGGATTTAGGACATTGATTAATCCTGC 60.574 40.741 12.90 6.90 38.13 4.85
5839 7409 1.468985 TTTGCCCCCACATAACATCG 58.531 50.000 0.00 0.00 0.00 3.84
5848 7418 6.462347 GCCCCCACATAACATCGAAATAAAAT 60.462 38.462 0.00 0.00 0.00 1.82
5852 7422 9.748708 CCCACATAACATCGAAATAAAATTCAT 57.251 29.630 0.00 0.00 0.00 2.57
5894 7464 1.934589 TGTTCATCCCGAAGCATACG 58.065 50.000 0.00 0.00 33.09 3.06
5921 7491 4.801330 ACATAACTGGTTCGATGACAGA 57.199 40.909 15.61 0.00 36.17 3.41
5937 7507 6.905609 CGATGACAGATTGATGATTTGAACAG 59.094 38.462 0.00 0.00 0.00 3.16
5966 7536 4.649088 ACCTGGCTACAACTTTTTGTTC 57.351 40.909 0.00 0.00 43.89 3.18
6048 7620 2.597578 TGACTAGTCCTGTGTAGCCA 57.402 50.000 20.11 0.00 0.00 4.75
6066 7638 2.359900 CCAACTCCAGTATGACTTGCC 58.640 52.381 0.00 0.00 39.69 4.52
6115 7687 0.105453 AGTCTGACGGATATGGCCCT 60.105 55.000 0.00 0.00 0.00 5.19
6317 7891 4.013050 CCTAAGGCTTTCTGAAAAGAGGG 58.987 47.826 4.45 0.00 43.90 4.30
6318 7892 3.884037 AAGGCTTTCTGAAAAGAGGGA 57.116 42.857 4.18 0.00 43.90 4.20
6352 7928 9.353999 GATGATTATAAAGTTTGGGTGTTGTTC 57.646 33.333 0.00 0.00 0.00 3.18
6366 7942 5.183140 GGGTGTTGTTCTGTGCTAATATTGT 59.817 40.000 0.00 0.00 0.00 2.71
6368 7944 7.094549 GGGTGTTGTTCTGTGCTAATATTGTTA 60.095 37.037 0.00 0.00 0.00 2.41
6370 7946 9.329913 GTGTTGTTCTGTGCTAATATTGTTAAG 57.670 33.333 0.00 0.00 0.00 1.85
6371 7947 9.062524 TGTTGTTCTGTGCTAATATTGTTAAGT 57.937 29.630 0.00 0.00 0.00 2.24
6458 8038 6.338937 GTCTTGGTACTTGGTTATCTGTAGG 58.661 44.000 0.00 0.00 0.00 3.18
6572 8152 3.677190 CCGGTGGGTACTTAAATGAACA 58.323 45.455 0.00 0.00 0.00 3.18
6755 8354 2.618559 GGGGCCATTGCAATTCAACATT 60.619 45.455 9.83 0.00 40.13 2.71
6757 8356 3.602483 GGCCATTGCAATTCAACATTCT 58.398 40.909 9.83 0.00 40.13 2.40
6958 8558 2.287915 CCTTATTTCAATGGCGTCTCCG 59.712 50.000 0.00 0.00 37.80 4.63
6987 8587 8.806429 TCCTGTTTGATTATTCAGCTCATTTA 57.194 30.769 0.00 0.00 32.27 1.40
7135 8735 2.494445 CTGCATCGCACCCGTCTA 59.506 61.111 0.00 0.00 33.79 2.59
7253 8853 2.501723 TCTCTCTGGTTTATGTCAGCCC 59.498 50.000 0.00 0.00 0.00 5.19
7325 8927 7.078011 TGTTTAAATTTTTGTGTTCAAGCCC 57.922 32.000 0.00 0.00 34.88 5.19
7378 8980 1.394917 CTGCCACTTGACGCTCATTAC 59.605 52.381 0.00 0.00 0.00 1.89
7540 9142 2.643551 CTTTGGGTGCCAGTCGAATAT 58.356 47.619 0.00 0.00 33.81 1.28
7541 9143 2.036958 TTGGGTGCCAGTCGAATATG 57.963 50.000 0.00 0.00 33.81 1.78
7603 9205 1.072331 AGAAACCGTTGATGCCTCACT 59.928 47.619 0.00 0.00 0.00 3.41
7604 9206 1.464997 GAAACCGTTGATGCCTCACTC 59.535 52.381 0.00 0.00 0.00 3.51
7620 9222 0.037605 ACTCGCTAAAAGGTCACGGG 60.038 55.000 0.00 0.00 0.00 5.28
7621 9223 0.037605 CTCGCTAAAAGGTCACGGGT 60.038 55.000 0.00 0.00 0.00 5.28
7622 9224 0.320073 TCGCTAAAAGGTCACGGGTG 60.320 55.000 0.00 0.00 0.00 4.61
7623 9225 0.601841 CGCTAAAAGGTCACGGGTGT 60.602 55.000 0.00 0.00 0.00 4.16
7624 9226 1.337074 CGCTAAAAGGTCACGGGTGTA 60.337 52.381 0.00 0.00 0.00 2.90
7625 9227 2.344025 GCTAAAAGGTCACGGGTGTAG 58.656 52.381 0.00 0.00 0.00 2.74
7626 9228 2.289257 GCTAAAAGGTCACGGGTGTAGT 60.289 50.000 0.00 0.00 0.00 2.73
7627 9229 2.538512 AAAAGGTCACGGGTGTAGTC 57.461 50.000 0.00 0.00 0.00 2.59
7729 9331 3.762407 TTTAGCAGTGCTCCAGTGTTA 57.238 42.857 23.64 0.00 40.44 2.41
7800 9402 5.047731 GGAAATTTTTCTTCTGGCTACTGCT 60.048 40.000 3.28 0.00 37.07 4.24
8056 9669 9.667107 TGGAGTTTGGATTTTACTAATCACTAG 57.333 33.333 0.00 0.00 0.00 2.57
8086 9699 1.242076 GCAAGTCCACTTCATGCTGT 58.758 50.000 0.00 0.00 33.11 4.40
8182 9796 4.576463 AGCCACAAAATATCTCATTCGTCC 59.424 41.667 0.00 0.00 0.00 4.79
8222 9836 2.230508 ACGTCGTCTTCATTGGCTCTAA 59.769 45.455 0.00 0.00 0.00 2.10
8323 9938 0.391597 TCGGGATTGCCGAACTATCC 59.608 55.000 17.54 9.34 46.49 2.59
8364 9979 1.212688 CCACATATCCTCAGGTGCCAA 59.787 52.381 0.00 0.00 0.00 4.52
8374 9989 4.410400 GGTGCCAACCCTCTCCGG 62.410 72.222 0.00 0.00 41.04 5.14
8396 10011 3.152341 CTCTCCCACTGCAAACATCTTT 58.848 45.455 0.00 0.00 0.00 2.52
8435 10051 1.205893 GGCTAACTGCTCTGCTGTAGT 59.794 52.381 2.74 0.00 39.66 2.73
8445 10061 3.490761 GCTCTGCTGTAGTCCATCTCTTC 60.491 52.174 0.00 0.00 0.00 2.87
8495 10111 3.151906 CCATCGGATGGGTCCCTC 58.848 66.667 26.20 4.17 46.86 4.30
8533 10149 4.124238 CTGACAAGGTTTTCGACAGGTAA 58.876 43.478 0.00 0.00 0.00 2.85
8556 10172 1.207791 CATAAGCTCCCCACAGAGGT 58.792 55.000 0.00 0.00 46.26 3.85
8599 10215 5.007626 GTGTACGTTGGCATCACATATTCAT 59.992 40.000 0.00 0.00 0.00 2.57
8600 10216 5.588246 TGTACGTTGGCATCACATATTCATT 59.412 36.000 0.00 0.00 0.00 2.57
8601 10217 5.173774 ACGTTGGCATCACATATTCATTC 57.826 39.130 0.00 0.00 0.00 2.67
8602 10218 4.639755 ACGTTGGCATCACATATTCATTCA 59.360 37.500 0.00 0.00 0.00 2.57
8603 10219 4.971830 CGTTGGCATCACATATTCATTCAC 59.028 41.667 0.00 0.00 0.00 3.18
8604 10220 5.448904 CGTTGGCATCACATATTCATTCACA 60.449 40.000 0.00 0.00 0.00 3.58
8605 10221 6.509656 GTTGGCATCACATATTCATTCACAT 58.490 36.000 0.00 0.00 0.00 3.21
8606 10222 6.079424 TGGCATCACATATTCATTCACATG 57.921 37.500 0.00 0.00 0.00 3.21
8607 10223 5.595133 TGGCATCACATATTCATTCACATGT 59.405 36.000 0.00 0.00 31.91 3.21
8608 10224 5.918576 GGCATCACATATTCATTCACATGTG 59.081 40.000 20.18 20.18 46.16 3.21
8609 10225 6.460537 GGCATCACATATTCATTCACATGTGT 60.461 38.462 24.63 7.64 45.39 3.72
8610 10226 7.255208 GGCATCACATATTCATTCACATGTGTA 60.255 37.037 24.63 16.60 45.39 2.90
8611 10227 7.588854 GCATCACATATTCATTCACATGTGTAC 59.411 37.037 24.63 0.00 45.39 2.90
8612 10228 8.614346 CATCACATATTCATTCACATGTGTACA 58.386 33.333 24.63 11.13 45.39 2.90
8613 10229 8.200364 TCACATATTCATTCACATGTGTACAG 57.800 34.615 24.63 12.17 45.39 2.74
8614 10230 7.280652 TCACATATTCATTCACATGTGTACAGG 59.719 37.037 24.63 12.22 45.39 4.00
8615 10231 4.970662 ATTCATTCACATGTGTACAGGC 57.029 40.909 24.63 0.00 0.00 4.85
8616 10232 2.710377 TCATTCACATGTGTACAGGCC 58.290 47.619 24.63 0.00 0.00 5.19
8617 10233 2.039613 TCATTCACATGTGTACAGGCCA 59.960 45.455 24.63 0.35 0.00 5.36
8618 10234 2.877097 TTCACATGTGTACAGGCCAT 57.123 45.000 24.63 0.00 0.00 4.40
8619 10235 2.112380 TCACATGTGTACAGGCCATG 57.888 50.000 24.63 18.47 41.31 3.66
8621 10237 2.569404 TCACATGTGTACAGGCCATGTA 59.431 45.455 24.63 8.28 45.41 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 191 3.917629 TGAAGTTGGTAAAGTATGGGGGA 59.082 43.478 0.00 0.00 0.00 4.81
238 240 6.649141 GGTCAGCACATATCCGATTAATTACA 59.351 38.462 0.00 0.00 0.00 2.41
421 423 6.718388 TCAAAATATTGAGAAGCGCATAGTG 58.282 36.000 11.47 0.00 40.59 2.74
489 491 5.359009 CCAGCATCATGAGTTCAAAATAGGT 59.641 40.000 0.09 0.00 0.00 3.08
847 903 2.860971 AACAAGGCTGAGGGGGCT 60.861 61.111 0.00 0.00 44.08 5.19
852 908 2.086869 CCATACACAACAAGGCTGAGG 58.913 52.381 0.00 0.00 0.00 3.86
854 910 1.886222 GCCCATACACAACAAGGCTGA 60.886 52.381 0.00 0.00 37.42 4.26
855 911 0.527565 GCCCATACACAACAAGGCTG 59.472 55.000 0.00 0.00 37.42 4.85
856 912 0.611896 GGCCCATACACAACAAGGCT 60.612 55.000 0.00 0.00 40.32 4.58
882 938 0.250467 GGCAAGCTGGTCTCACTTGA 60.250 55.000 6.18 0.00 42.71 3.02
1237 1293 4.880426 GGCGGAGGGGATGGAGGA 62.880 72.222 0.00 0.00 0.00 3.71
1356 1412 2.202544 GGAGACACGCTGAGCTCG 60.203 66.667 9.64 5.21 0.00 5.03
1375 1431 2.951745 GATCGCCTCGTCGCTGTG 60.952 66.667 0.00 0.00 0.00 3.66
1420 1476 1.003331 TCGCCGAACACACAAATGAAC 60.003 47.619 0.00 0.00 0.00 3.18
1458 1514 5.878116 TGCCATGAACAAAGGTGTATACTAC 59.122 40.000 4.17 1.04 36.80 2.73
1537 1593 2.554893 GTGGTAAATTGCCGAGTGGAAA 59.445 45.455 0.00 0.00 37.13 3.13
1628 1684 6.882610 TGAAACACATAAAAGAGCAGACAT 57.117 33.333 0.00 0.00 0.00 3.06
1656 1712 4.742438 TTCGTAGCATGAACCTGAAAAC 57.258 40.909 0.00 0.00 0.00 2.43
1681 1737 6.922247 AGCAACTCTAGAACATCATCAATG 57.078 37.500 0.00 0.00 41.48 2.82
1807 1863 7.839680 ACAATTGAAGTTCTTAGGGAAACAT 57.160 32.000 13.59 0.00 35.51 2.71
1952 2010 1.081892 CCAGACTGTTGGCGATCTTG 58.918 55.000 0.93 0.00 0.00 3.02
1990 2048 6.209361 TCAAACTACGCATAGCAAGAGATAG 58.791 40.000 0.00 0.00 30.75 2.08
2139 2197 9.768662 ATCAATGTTCAGGATTTAAAATATGCC 57.231 29.630 0.00 0.00 0.00 4.40
2171 2229 5.068329 TGGTTCATGAAGTTGCATTAACACA 59.932 36.000 8.80 0.00 41.88 3.72
2188 2246 7.361713 CCAACAATACAATCGTAGTTGGTTCAT 60.362 37.037 12.61 0.00 42.97 2.57
2264 2323 6.605471 ATCGGTAGATATGGTGCAGAATAA 57.395 37.500 0.00 0.00 34.85 1.40
2383 2443 3.516586 TGGAACTGGAGTCTGGAACATA 58.483 45.455 0.00 0.00 38.20 2.29
2416 2476 1.734465 GCAACCATGTGAGCTGTCTAC 59.266 52.381 0.00 0.00 0.00 2.59
2465 2525 2.159531 TGCAGAAACGCAAGCATGATAC 60.160 45.455 0.00 0.00 39.45 2.24
2522 2583 6.719370 ACTTTGCATGGATAAAGGTAGAACAA 59.281 34.615 4.01 0.00 38.03 2.83
2713 2774 3.365364 CGCTCCTGTTAAAGCAAGAAAGG 60.365 47.826 0.00 0.00 38.45 3.11
3016 3658 9.003658 TCACAAACACAAATGGTTAAAACAAAT 57.996 25.926 0.00 0.00 31.51 2.32
3023 3665 5.112686 GCCTTCACAAACACAAATGGTTAA 58.887 37.500 0.00 0.00 31.51 2.01
3029 3671 4.162131 AGAAAGGCCTTCACAAACACAAAT 59.838 37.500 20.79 0.00 36.40 2.32
3118 3760 7.116376 CACTCGAAAGCTTAATCACTAGAAACA 59.884 37.037 0.00 0.00 0.00 2.83
3536 4432 4.171442 AGTTGGGGTAGGCTAGAGGTTATA 59.829 45.833 0.00 0.00 0.00 0.98
3537 4433 3.051264 AGTTGGGGTAGGCTAGAGGTTAT 60.051 47.826 0.00 0.00 0.00 1.89
3538 4434 2.316982 AGTTGGGGTAGGCTAGAGGTTA 59.683 50.000 0.00 0.00 0.00 2.85
3539 4435 1.080666 AGTTGGGGTAGGCTAGAGGTT 59.919 52.381 0.00 0.00 0.00 3.50
3540 4436 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
3541 4437 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
3542 4438 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
3543 4439 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
3544 4440 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
3545 4441 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
3546 4442 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
3555 4451 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
3556 4452 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
3557 4453 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
3558 4454 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
3559 4455 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
3560 4456 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
3561 4457 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
3562 4458 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
3563 4459 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
3564 4460 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
3565 4461 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
3566 4462 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
3567 4463 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
3568 4464 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
3569 4465 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
3570 4466 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
3571 4467 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
3572 4468 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
3573 4469 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
3574 4470 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
3575 4471 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
3576 4472 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
3577 4473 7.715265 ATACAACAACAACAACAACAACAAA 57.285 28.000 0.00 0.00 0.00 2.83
3578 4474 8.812147 TTATACAACAACAACAACAACAACAA 57.188 26.923 0.00 0.00 0.00 2.83
3579 4475 8.812147 TTTATACAACAACAACAACAACAACA 57.188 26.923 0.00 0.00 0.00 3.33
3583 4479 9.204792 GCATTTTTATACAACAACAACAACAAC 57.795 29.630 0.00 0.00 0.00 3.32
3584 4480 9.155975 AGCATTTTTATACAACAACAACAACAA 57.844 25.926 0.00 0.00 0.00 2.83
3585 4481 8.709386 AGCATTTTTATACAACAACAACAACA 57.291 26.923 0.00 0.00 0.00 3.33
3586 4482 9.419737 CAAGCATTTTTATACAACAACAACAAC 57.580 29.630 0.00 0.00 0.00 3.32
3587 4483 9.371136 TCAAGCATTTTTATACAACAACAACAA 57.629 25.926 0.00 0.00 0.00 2.83
3588 4484 8.932945 TCAAGCATTTTTATACAACAACAACA 57.067 26.923 0.00 0.00 0.00 3.33
3594 4490 9.347934 CGGTAATTCAAGCATTTTTATACAACA 57.652 29.630 0.00 0.00 0.00 3.33
3595 4491 9.562583 TCGGTAATTCAAGCATTTTTATACAAC 57.437 29.630 0.00 0.00 0.00 3.32
3597 4493 9.729023 CATCGGTAATTCAAGCATTTTTATACA 57.271 29.630 0.00 0.00 0.00 2.29
3598 4494 9.730420 ACATCGGTAATTCAAGCATTTTTATAC 57.270 29.630 0.00 0.00 0.00 1.47
3632 4528 8.867935 CAGATTACAAACTGTCACTCAAGATAG 58.132 37.037 0.00 0.00 33.50 2.08
3638 4534 4.702831 TGCAGATTACAAACTGTCACTCA 58.297 39.130 0.00 0.00 36.62 3.41
3760 4656 3.438781 GGCGTGAGATACCACATCAAAAA 59.561 43.478 0.00 0.00 36.89 1.94
3761 4657 3.006940 GGCGTGAGATACCACATCAAAA 58.993 45.455 0.00 0.00 36.89 2.44
4231 5169 6.403200 GCCGACAAATAGTTGATAAGCAGAAA 60.403 38.462 10.35 0.00 38.20 2.52
4253 5268 1.524621 ATTCCTCAGCATTCCGCCG 60.525 57.895 0.00 0.00 44.04 6.46
4273 5288 8.572855 TGGTTAAACATGACATCAACATGATA 57.427 30.769 13.54 5.05 45.22 2.15
4307 5322 7.488322 ACTTTTTCAACAGCATGCTAAACTTA 58.512 30.769 22.19 2.08 42.53 2.24
4442 5458 9.407380 TCACATAGCCTCATTGTTTATGTTTAT 57.593 29.630 0.00 0.00 33.86 1.40
4443 5459 8.800370 TCACATAGCCTCATTGTTTATGTTTA 57.200 30.769 0.00 0.00 33.86 2.01
4444 5460 7.701539 TCACATAGCCTCATTGTTTATGTTT 57.298 32.000 0.00 0.00 33.86 2.83
4445 5461 7.682741 GCATCACATAGCCTCATTGTTTATGTT 60.683 37.037 0.00 0.00 33.86 2.71
4477 5493 4.202377 TGGGTTACAAAGAAATGTCGAGGA 60.202 41.667 0.00 0.00 34.75 3.71
4479 5495 5.643777 AGATGGGTTACAAAGAAATGTCGAG 59.356 40.000 0.00 0.00 34.75 4.04
4521 5537 1.133513 ACTTGTCTTCAATGGGTGCCA 60.134 47.619 0.00 0.00 38.19 4.92
4522 5538 1.541588 GACTTGTCTTCAATGGGTGCC 59.458 52.381 0.00 0.00 32.82 5.01
4637 5653 7.888021 AGTTCAAACATGGTTAATAGTGATCCA 59.112 33.333 0.00 0.00 0.00 3.41
4717 5735 3.430931 ACACGTTTGTTTGTTCAATCCG 58.569 40.909 0.00 0.00 28.43 4.18
4918 6031 1.151450 CTGGTGGCACTGAAAGGGT 59.849 57.895 18.45 0.00 41.80 4.34
5060 6173 8.580720 ACAGAGATATATACACACTGGATCAAC 58.419 37.037 15.14 0.00 0.00 3.18
5114 6229 7.617041 AGAAAATGTGAGCTTAAGTGGATAC 57.383 36.000 4.02 0.00 0.00 2.24
5184 6300 5.811613 GCATTGCAATTAGCTTATGGAACAA 59.188 36.000 9.83 0.00 44.38 2.83
5248 6364 6.490721 GCCAATCTTCTTAGGTAGACTAGCTA 59.509 42.308 15.80 15.80 37.70 3.32
5336 6616 9.160496 AGAAGACAAAGTCTGTTTGATATGATC 57.840 33.333 0.00 0.00 42.59 2.92
5506 6787 3.411446 TGAATGTCATGACCAAGACACC 58.589 45.455 22.85 6.48 46.38 4.16
5515 6796 5.138125 ACAAACCCAATGAATGTCATGAC 57.862 39.130 19.27 19.27 37.15 3.06
5517 6798 7.999679 ACTATACAAACCCAATGAATGTCATG 58.000 34.615 0.00 0.00 37.15 3.07
5698 7266 0.764369 TGGATTCGGCTAGGCAGGAT 60.764 55.000 17.45 9.19 0.00 3.24
5704 7272 4.543590 AGTCATATTGGATTCGGCTAGG 57.456 45.455 0.00 0.00 0.00 3.02
5848 7418 8.908786 AAAGAAACTACAGTTGAGATCATGAA 57.091 30.769 0.00 0.00 38.44 2.57
5852 7422 8.506168 ACAAAAAGAAACTACAGTTGAGATCA 57.494 30.769 0.00 0.00 38.44 2.92
5894 7464 7.577979 TGTCATCGAACCAGTTATGTTAAAAC 58.422 34.615 0.00 0.00 0.00 2.43
5921 7491 5.824421 AGGACTCCTGTTCAAATCATCAAT 58.176 37.500 0.00 0.00 29.57 2.57
5937 7507 1.481363 GTTGTAGCCAGGTAGGACTCC 59.519 57.143 0.00 0.00 41.22 3.85
5966 7536 3.194968 TGGAGTAACGCTTTCTCCTAAGG 59.805 47.826 17.54 0.00 45.46 2.69
6048 7620 1.066143 CCGGCAAGTCATACTGGAGTT 60.066 52.381 0.00 0.00 30.92 3.01
6066 7638 2.045438 TTGGCCATGGTGCTACCG 60.045 61.111 14.67 0.00 42.58 4.02
6115 7687 0.251787 TGGACTCTGGCAGCTGACTA 60.252 55.000 22.80 8.14 0.00 2.59
6336 7912 2.094234 GCACAGAACAACACCCAAACTT 60.094 45.455 0.00 0.00 0.00 2.66
6340 7916 2.719531 TAGCACAGAACAACACCCAA 57.280 45.000 0.00 0.00 0.00 4.12
6458 8038 5.126061 ACCTGGACAACATGCAATAATCTTC 59.874 40.000 0.00 0.00 0.00 2.87
6509 8089 7.560626 TCAGTTCCTCCCTAGTTCTATTTCTAC 59.439 40.741 0.00 0.00 0.00 2.59
6572 8152 5.683876 ACAGAAGTATAGCTGGTTGTCAT 57.316 39.130 0.00 0.00 36.47 3.06
6688 8268 5.631096 GCTTGAAGCTGTAATTTGGAAGAAC 59.369 40.000 10.44 0.00 38.45 3.01
6755 8354 8.650490 TGTCCATAAAGATACAATCATGCTAGA 58.350 33.333 0.00 0.00 0.00 2.43
6757 8356 9.797642 ATTGTCCATAAAGATACAATCATGCTA 57.202 29.630 0.00 0.00 37.91 3.49
6958 8558 7.370383 TGAGCTGAATAATCAAACAGGAAAAC 58.630 34.615 0.00 0.00 34.49 2.43
6987 8587 0.541392 TCTGGCAGCGGTATCACATT 59.459 50.000 10.34 0.00 0.00 2.71
7135 8735 3.508845 AAGCTGTGGGTGAATGTAGTT 57.491 42.857 0.00 0.00 0.00 2.24
7174 8774 7.284919 TCATCTCGGCAAACTATATAAGTGA 57.715 36.000 0.00 0.00 38.88 3.41
7253 8853 4.445385 GCTGGTTTTGCTAGACATGTTTTG 59.555 41.667 0.00 0.00 0.00 2.44
7325 8927 0.594602 TATGATAACGACCCGGCTCG 59.405 55.000 17.49 17.49 39.68 5.03
7378 8980 7.681939 TTTAGCAACCCTTAGTGATGTTTAG 57.318 36.000 0.00 0.00 0.00 1.85
7603 9205 0.320073 CACCCGTGACCTTTTAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
7604 9206 0.601841 ACACCCGTGACCTTTTAGCG 60.602 55.000 0.96 0.00 0.00 4.26
7620 9222 5.234757 CCTACTGAGATCTACACGACTACAC 59.765 48.000 0.00 0.00 0.00 2.90
7621 9223 5.358090 CCTACTGAGATCTACACGACTACA 58.642 45.833 0.00 0.00 0.00 2.74
7622 9224 4.751098 CCCTACTGAGATCTACACGACTAC 59.249 50.000 0.00 0.00 0.00 2.73
7623 9225 4.743045 GCCCTACTGAGATCTACACGACTA 60.743 50.000 0.00 0.00 0.00 2.59
7624 9226 3.811083 CCCTACTGAGATCTACACGACT 58.189 50.000 0.00 0.00 0.00 4.18
7625 9227 2.291190 GCCCTACTGAGATCTACACGAC 59.709 54.545 0.00 0.00 0.00 4.34
7626 9228 2.573369 GCCCTACTGAGATCTACACGA 58.427 52.381 0.00 0.00 0.00 4.35
7627 9229 1.609555 GGCCCTACTGAGATCTACACG 59.390 57.143 0.00 0.00 0.00 4.49
7729 9331 8.681486 TGCTTTCAGCTCATATATTGTGTTAT 57.319 30.769 0.00 0.00 42.97 1.89
7753 9355 6.878923 TCCTCACATGGTTTTATACTTCACTG 59.121 38.462 0.00 0.00 0.00 3.66
7853 9466 3.609175 GCACGATTGCTTAAGCTGAAACA 60.609 43.478 26.90 3.85 46.17 2.83
7909 9522 2.173669 CGCACGATAGGCCCACAAG 61.174 63.158 0.00 0.00 43.77 3.16
8064 9677 4.023561 CAGCATGAAGTGGACTTGCCAG 62.024 54.545 0.00 0.00 44.51 4.85
8086 9699 4.072131 GGCTCCAAACACTAATCTGTTGA 58.928 43.478 0.00 0.00 34.50 3.18
8182 9796 2.794910 CGTTAGGCCAGATACAACATCG 59.205 50.000 5.01 0.00 0.00 3.84
8323 9938 0.180171 TTGGGCGTATGGATGGACTG 59.820 55.000 0.00 0.00 0.00 3.51
8367 9982 2.043450 AGTGGGAGAGCCGGAGAG 60.043 66.667 5.05 0.00 33.83 3.20
8368 9983 2.363018 CAGTGGGAGAGCCGGAGA 60.363 66.667 5.05 0.00 33.83 3.71
8369 9984 4.154347 GCAGTGGGAGAGCCGGAG 62.154 72.222 5.05 0.00 33.83 4.63
8371 9986 3.551496 TTTGCAGTGGGAGAGCCGG 62.551 63.158 0.00 0.00 33.83 6.13
8372 9987 2.032528 TTTGCAGTGGGAGAGCCG 59.967 61.111 0.00 0.00 33.83 5.52
8373 9988 0.610232 ATGTTTGCAGTGGGAGAGCC 60.610 55.000 0.00 0.00 0.00 4.70
8374 9989 0.807496 GATGTTTGCAGTGGGAGAGC 59.193 55.000 0.00 0.00 0.00 4.09
8396 10011 3.332034 GCCGAGAAAAACTAAGGCAGTA 58.668 45.455 0.00 0.00 45.47 2.74
8522 10138 3.056107 AGCTTATGTGCTTACCTGTCGAA 60.056 43.478 0.00 0.00 40.93 3.71
8576 10192 4.508662 TGAATATGTGATGCCAACGTACA 58.491 39.130 0.00 0.00 0.00 2.90
8599 10215 2.435422 CATGGCCTGTACACATGTGAA 58.565 47.619 31.94 15.32 37.72 3.18
8600 10216 2.112380 CATGGCCTGTACACATGTGA 57.888 50.000 31.94 12.93 37.72 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.