Multiple sequence alignment - TraesCS2D01G455300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G455300 chr2D 100.000 4293 0 0 1 4293 563301058 563305350 0.000000e+00 7928.0
1 TraesCS2D01G455300 chr2D 95.233 923 40 2 3374 4293 647736321 647737242 0.000000e+00 1458.0
2 TraesCS2D01G455300 chr2D 93.902 328 18 1 461 786 90604039 90603712 1.070000e-135 494.0
3 TraesCS2D01G455300 chr2D 92.254 142 10 1 2053 2193 563302971 563303112 2.620000e-47 200.0
4 TraesCS2D01G455300 chr2D 92.254 142 10 1 1914 2055 563303110 563303250 2.620000e-47 200.0
5 TraesCS2D01G455300 chr2B 93.465 1469 68 13 793 2255 673959063 673960509 0.000000e+00 2156.0
6 TraesCS2D01G455300 chr2B 96.282 1049 32 3 2328 3373 673960510 673961554 0.000000e+00 1714.0
7 TraesCS2D01G455300 chr2B 86.860 449 56 3 11 459 673957140 673957585 2.310000e-137 499.0
8 TraesCS2D01G455300 chr2B 93.215 339 19 3 451 786 484925924 484925587 2.980000e-136 496.0
9 TraesCS2D01G455300 chr2B 93.478 138 8 1 2053 2189 673960168 673960305 2.020000e-48 204.0
10 TraesCS2D01G455300 chr2B 90.714 140 12 1 1916 2055 673960309 673960447 7.330000e-43 185.0
11 TraesCS2D01G455300 chr2B 88.776 98 11 0 1797 1894 673960140 673960237 2.100000e-23 121.0
12 TraesCS2D01G455300 chr2A 92.634 1507 68 18 785 2274 703706805 703708285 0.000000e+00 2128.0
13 TraesCS2D01G455300 chr2A 89.723 613 44 8 2309 2904 703708403 703709013 0.000000e+00 765.0
14 TraesCS2D01G455300 chr2A 94.118 476 27 1 2899 3374 703709091 703709565 0.000000e+00 723.0
15 TraesCS2D01G455300 chr2A 77.101 476 57 21 13 460 703706356 703706807 1.200000e-55 228.0
16 TraesCS2D01G455300 chr2A 91.549 142 11 1 2053 2193 703707927 703708068 1.220000e-45 195.0
17 TraesCS2D01G455300 chr2A 92.029 138 9 2 1914 2050 703708066 703708202 4.380000e-45 193.0
18 TraesCS2D01G455300 chr2A 83.140 172 19 5 1733 1894 703707825 703707996 9.620000e-32 148.0
19 TraesCS2D01G455300 chr2A 93.878 49 3 0 2283 2331 684607802 684607850 1.660000e-09 75.0
20 TraesCS2D01G455300 chr2A 100.000 29 0 0 2251 2279 768318173 768318201 2.000000e-03 54.7
21 TraesCS2D01G455300 chr1D 95.991 923 32 3 3374 4293 17123036 17122116 0.000000e+00 1495.0
22 TraesCS2D01G455300 chr1D 95.016 923 42 2 3374 4293 99685859 99684938 0.000000e+00 1447.0
23 TraesCS2D01G455300 chr1D 98.113 53 1 0 2283 2335 441296142 441296090 4.570000e-15 93.5
24 TraesCS2D01G455300 chr3D 95.775 923 35 4 3374 4293 570046593 570045672 0.000000e+00 1485.0
25 TraesCS2D01G455300 chr3D 95.125 923 41 3 3374 4293 602107464 602106543 0.000000e+00 1452.0
26 TraesCS2D01G455300 chr3D 92.754 345 21 3 451 793 507868675 507868333 2.980000e-136 496.0
27 TraesCS2D01G455300 chr3D 93.195 338 20 2 462 796 7429105 7428768 1.070000e-135 494.0
28 TraesCS2D01G455300 chr6D 95.666 923 36 2 3374 4293 69745555 69746476 0.000000e+00 1480.0
29 TraesCS2D01G455300 chr7D 95.577 927 33 3 3374 4293 73132249 73131324 0.000000e+00 1478.0
30 TraesCS2D01G455300 chr7D 93.195 338 19 3 451 786 496611958 496611623 1.070000e-135 494.0
31 TraesCS2D01G455300 chr7D 92.464 345 22 3 451 793 467841125 467840783 1.390000e-134 490.0
32 TraesCS2D01G455300 chr5D 95.558 923 37 2 3374 4293 30613918 30614839 0.000000e+00 1474.0
33 TraesCS2D01G455300 chr5D 95.450 923 37 3 3374 4293 432457579 432456659 0.000000e+00 1467.0
34 TraesCS2D01G455300 chr3B 94.225 329 17 1 462 788 591554101 591553773 6.410000e-138 501.0
35 TraesCS2D01G455300 chr3B 94.225 329 17 1 461 787 630304243 630304571 6.410000e-138 501.0
36 TraesCS2D01G455300 chr5B 93.472 337 19 2 454 787 104062930 104063266 8.290000e-137 497.0
37 TraesCS2D01G455300 chr5B 96.154 52 2 0 2283 2334 57019192 57019141 7.650000e-13 86.1
38 TraesCS2D01G455300 chr3A 97.368 38 1 0 2245 2282 681753812 681753775 9.960000e-07 65.8
39 TraesCS2D01G455300 chr1A 100.000 34 0 0 2252 2285 291262035 291262068 3.580000e-06 63.9
40 TraesCS2D01G455300 chr6A 94.444 36 2 0 2244 2279 462256726 462256691 6.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G455300 chr2D 563301058 563305350 4292 False 2776.000000 7928 94.836000 1 4293 3 chr2D.!!$F2 4292
1 TraesCS2D01G455300 chr2D 647736321 647737242 921 False 1458.000000 1458 95.233000 3374 4293 1 chr2D.!!$F1 919
2 TraesCS2D01G455300 chr2B 673957140 673961554 4414 False 813.166667 2156 91.595833 11 3373 6 chr2B.!!$F1 3362
3 TraesCS2D01G455300 chr2A 703706356 703709565 3209 False 625.714286 2128 88.613429 13 3374 7 chr2A.!!$F3 3361
4 TraesCS2D01G455300 chr1D 17122116 17123036 920 True 1495.000000 1495 95.991000 3374 4293 1 chr1D.!!$R1 919
5 TraesCS2D01G455300 chr1D 99684938 99685859 921 True 1447.000000 1447 95.016000 3374 4293 1 chr1D.!!$R2 919
6 TraesCS2D01G455300 chr3D 570045672 570046593 921 True 1485.000000 1485 95.775000 3374 4293 1 chr3D.!!$R3 919
7 TraesCS2D01G455300 chr3D 602106543 602107464 921 True 1452.000000 1452 95.125000 3374 4293 1 chr3D.!!$R4 919
8 TraesCS2D01G455300 chr6D 69745555 69746476 921 False 1480.000000 1480 95.666000 3374 4293 1 chr6D.!!$F1 919
9 TraesCS2D01G455300 chr7D 73131324 73132249 925 True 1478.000000 1478 95.577000 3374 4293 1 chr7D.!!$R1 919
10 TraesCS2D01G455300 chr5D 30613918 30614839 921 False 1474.000000 1474 95.558000 3374 4293 1 chr5D.!!$F1 919
11 TraesCS2D01G455300 chr5D 432456659 432457579 920 True 1467.000000 1467 95.450000 3374 4293 1 chr5D.!!$R1 919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 2151 1.074872 GGAAACCGCGAACTCCGTAG 61.075 60.0 8.23 0.0 41.15 3.51 F
1708 2978 1.254026 TGCTAGTGTTACGAGCCAGT 58.746 50.0 10.73 0.0 44.65 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 3139 0.037697 CGGTGGATCTTTGTCGACCA 60.038 55.0 14.12 0.0 44.45 4.02 R
3411 4936 0.175760 AAGTGACCGTATGCATCGCT 59.824 50.0 0.19 0.0 34.72 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.093306 TCCTCATGGCGTTTGTACAG 57.907 50.000 0.00 0.00 0.00 2.74
71 72 4.398044 TGTGAGTTTTGTCCTTGTTCTTCC 59.602 41.667 0.00 0.00 0.00 3.46
110 133 3.187842 GGGTTTCAAGTGTATCGTTGACC 59.812 47.826 0.00 0.00 32.40 4.02
128 151 3.069586 TGACCACAACATCGTCTTCTTCT 59.930 43.478 0.00 0.00 0.00 2.85
154 177 3.131400 ACCTCTTCTCTCGAGTATTTGCC 59.869 47.826 13.13 0.00 0.00 4.52
188 211 4.530710 TGTTTGACTTGGCGATACTAGT 57.469 40.909 0.00 0.00 0.00 2.57
197 220 5.047519 ACTTGGCGATACTAGTACAGTTGTT 60.048 40.000 4.31 0.00 38.80 2.83
205 228 7.705325 CGATACTAGTACAGTTGTTTGCCTATT 59.295 37.037 4.31 0.00 38.80 1.73
214 237 6.042143 CAGTTGTTTGCCTATTTCAGTTTGT 58.958 36.000 0.00 0.00 0.00 2.83
225 248 6.863126 CCTATTTCAGTTTGTGATGGTTCAAC 59.137 38.462 0.00 0.00 34.17 3.18
227 250 2.616376 TCAGTTTGTGATGGTTCAACGG 59.384 45.455 0.00 0.00 32.48 4.44
258 281 9.461312 TGTTTCTTTACAGGTCTTTGCATATAT 57.539 29.630 0.00 0.00 0.00 0.86
375 401 1.202557 TGCGGGGTTCGTATTGGTATC 60.203 52.381 0.00 0.00 41.72 2.24
394 420 5.593095 GGTATCCTTCCATTTGTTTAGGGTC 59.407 44.000 0.00 0.00 0.00 4.46
415 441 6.652481 GGGTCTCATTTATGTATGTGGATCAG 59.348 42.308 0.00 0.00 0.00 2.90
466 1223 9.924650 AGTGTTCTTTTGATTAATACGTACTCT 57.075 29.630 0.00 0.00 0.00 3.24
471 1228 9.186837 TCTTTTGATTAATACGTACTCTCTCCT 57.813 33.333 0.00 0.00 0.00 3.69
475 1232 9.798994 TTGATTAATACGTACTCTCTCCTTTTC 57.201 33.333 0.00 0.00 0.00 2.29
483 1240 6.375455 ACGTACTCTCTCCTTTTCGGTTTATA 59.625 38.462 0.00 0.00 0.00 0.98
484 1241 6.911511 CGTACTCTCTCCTTTTCGGTTTATAG 59.088 42.308 0.00 0.00 0.00 1.31
488 1245 3.778629 TCTCCTTTTCGGTTTATAGGGCT 59.221 43.478 0.00 0.00 0.00 5.19
489 1246 4.127907 CTCCTTTTCGGTTTATAGGGCTC 58.872 47.826 0.00 0.00 0.00 4.70
492 1249 4.887655 CCTTTTCGGTTTATAGGGCTCAAT 59.112 41.667 0.00 0.00 0.00 2.57
493 1250 5.359860 CCTTTTCGGTTTATAGGGCTCAATT 59.640 40.000 0.00 0.00 0.00 2.32
494 1251 6.445357 TTTTCGGTTTATAGGGCTCAATTC 57.555 37.500 0.00 0.00 0.00 2.17
495 1252 4.764050 TCGGTTTATAGGGCTCAATTCA 57.236 40.909 0.00 0.00 0.00 2.57
498 1255 5.946972 TCGGTTTATAGGGCTCAATTCAAAA 59.053 36.000 0.00 0.00 0.00 2.44
499 1256 6.434652 TCGGTTTATAGGGCTCAATTCAAAAA 59.565 34.615 0.00 0.00 0.00 1.94
501 1258 7.435192 CGGTTTATAGGGCTCAATTCAAAAATC 59.565 37.037 0.00 0.00 0.00 2.17
504 1261 8.821686 TTATAGGGCTCAATTCAAAAATCTCA 57.178 30.769 0.00 0.00 0.00 3.27
506 1263 6.218108 AGGGCTCAATTCAAAAATCTCATC 57.782 37.500 0.00 0.00 0.00 2.92
507 1264 5.718130 AGGGCTCAATTCAAAAATCTCATCA 59.282 36.000 0.00 0.00 0.00 3.07
514 1271 7.874016 TCAATTCAAAAATCTCATCAACCAAGG 59.126 33.333 0.00 0.00 0.00 3.61
515 1272 6.729690 TTCAAAAATCTCATCAACCAAGGT 57.270 33.333 0.00 0.00 0.00 3.50
517 1274 8.421249 TTCAAAAATCTCATCAACCAAGGTAT 57.579 30.769 0.00 0.00 0.00 2.73
520 1277 9.740239 CAAAAATCTCATCAACCAAGGTATATG 57.260 33.333 0.00 0.00 0.00 1.78
530 1287 3.808728 CCAAGGTATATGGTGAGTGGTG 58.191 50.000 0.00 0.00 33.08 4.17
531 1288 3.433598 CCAAGGTATATGGTGAGTGGTGG 60.434 52.174 0.00 0.00 33.08 4.61
533 1290 3.731431 AGGTATATGGTGAGTGGTGGAA 58.269 45.455 0.00 0.00 0.00 3.53
534 1291 4.307259 AGGTATATGGTGAGTGGTGGAAT 58.693 43.478 0.00 0.00 0.00 3.01
535 1292 5.473273 AGGTATATGGTGAGTGGTGGAATA 58.527 41.667 0.00 0.00 0.00 1.75
536 1293 5.307196 AGGTATATGGTGAGTGGTGGAATAC 59.693 44.000 0.00 0.00 0.00 1.89
537 1294 5.307196 GGTATATGGTGAGTGGTGGAATACT 59.693 44.000 0.00 0.00 0.00 2.12
538 1295 5.975988 ATATGGTGAGTGGTGGAATACTT 57.024 39.130 0.00 0.00 0.00 2.24
541 1298 4.798882 TGGTGAGTGGTGGAATACTTTTT 58.201 39.130 0.00 0.00 0.00 1.94
542 1299 4.582656 TGGTGAGTGGTGGAATACTTTTTG 59.417 41.667 0.00 0.00 0.00 2.44
544 1301 5.766174 GGTGAGTGGTGGAATACTTTTTGTA 59.234 40.000 0.00 0.00 35.37 2.41
545 1302 6.072673 GGTGAGTGGTGGAATACTTTTTGTAG 60.073 42.308 0.00 0.00 34.24 2.74
546 1303 6.485648 GTGAGTGGTGGAATACTTTTTGTAGT 59.514 38.462 0.00 0.00 34.24 2.73
550 1345 6.419710 GTGGTGGAATACTTTTTGTAGTTTGC 59.580 38.462 0.00 0.00 34.24 3.68
559 1354 5.931724 ACTTTTTGTAGTTTGCAAAAGCACT 59.068 32.000 14.67 10.11 43.70 4.40
562 1357 4.710423 TGTAGTTTGCAAAAGCACTCAA 57.290 36.364 14.67 0.00 0.00 3.02
563 1358 5.261209 TGTAGTTTGCAAAAGCACTCAAT 57.739 34.783 14.67 0.00 0.00 2.57
564 1359 5.659463 TGTAGTTTGCAAAAGCACTCAATT 58.341 33.333 14.67 0.00 0.00 2.32
566 1361 7.261325 TGTAGTTTGCAAAAGCACTCAATTAA 58.739 30.769 14.67 0.00 0.00 1.40
569 1364 5.594724 TTGCAAAAGCACTCAATTAATGC 57.405 34.783 0.00 0.60 39.74 3.56
581 1376 7.383300 GCACTCAATTAATGCTCTTGTTTTTCT 59.617 33.333 0.00 0.00 36.40 2.52
582 1377 9.252962 CACTCAATTAATGCTCTTGTTTTTCTT 57.747 29.630 0.00 0.00 0.00 2.52
645 1451 5.247507 GCATAAAGTACATGCATTGGTCA 57.752 39.130 10.82 0.00 46.47 4.02
646 1452 5.649557 GCATAAAGTACATGCATTGGTCAA 58.350 37.500 10.82 0.00 46.47 3.18
647 1453 6.275335 GCATAAAGTACATGCATTGGTCAAT 58.725 36.000 10.82 0.00 46.47 2.57
648 1454 6.757947 GCATAAAGTACATGCATTGGTCAATT 59.242 34.615 10.82 0.00 46.47 2.32
649 1455 7.278424 GCATAAAGTACATGCATTGGTCAATTT 59.722 33.333 10.82 0.00 46.47 1.82
650 1456 9.153721 CATAAAGTACATGCATTGGTCAATTTT 57.846 29.630 0.00 0.00 0.00 1.82
651 1457 7.656707 AAAGTACATGCATTGGTCAATTTTC 57.343 32.000 0.00 0.00 0.00 2.29
652 1458 5.723295 AGTACATGCATTGGTCAATTTTCC 58.277 37.500 0.00 0.00 0.00 3.13
653 1459 3.941573 ACATGCATTGGTCAATTTTCCC 58.058 40.909 0.00 0.00 0.00 3.97
654 1460 3.583966 ACATGCATTGGTCAATTTTCCCT 59.416 39.130 0.00 0.00 0.00 4.20
655 1461 4.041938 ACATGCATTGGTCAATTTTCCCTT 59.958 37.500 0.00 0.00 0.00 3.95
656 1462 5.248020 ACATGCATTGGTCAATTTTCCCTTA 59.752 36.000 0.00 0.00 0.00 2.69
657 1463 5.815233 TGCATTGGTCAATTTTCCCTTAA 57.185 34.783 0.00 0.00 0.00 1.85
658 1464 6.371595 TGCATTGGTCAATTTTCCCTTAAT 57.628 33.333 0.00 0.00 0.00 1.40
659 1465 7.487822 TGCATTGGTCAATTTTCCCTTAATA 57.512 32.000 0.00 0.00 0.00 0.98
660 1466 8.088463 TGCATTGGTCAATTTTCCCTTAATAT 57.912 30.769 0.00 0.00 0.00 1.28
661 1467 8.547173 TGCATTGGTCAATTTTCCCTTAATATT 58.453 29.630 0.00 0.00 0.00 1.28
662 1468 9.394767 GCATTGGTCAATTTTCCCTTAATATTT 57.605 29.630 0.00 0.00 0.00 1.40
664 1470 8.785329 TTGGTCAATTTTCCCTTAATATTTGC 57.215 30.769 0.00 0.00 0.00 3.68
665 1471 7.911651 TGGTCAATTTTCCCTTAATATTTGCA 58.088 30.769 0.00 0.00 0.00 4.08
666 1472 8.547173 TGGTCAATTTTCCCTTAATATTTGCAT 58.453 29.630 0.00 0.00 0.00 3.96
667 1473 8.829612 GGTCAATTTTCCCTTAATATTTGCATG 58.170 33.333 0.00 0.00 0.00 4.06
668 1474 8.337532 GTCAATTTTCCCTTAATATTTGCATGC 58.662 33.333 11.82 11.82 0.00 4.06
669 1475 8.045507 TCAATTTTCCCTTAATATTTGCATGCA 58.954 29.630 18.46 18.46 0.00 3.96
670 1476 8.675504 CAATTTTCCCTTAATATTTGCATGCAA 58.324 29.630 28.80 28.80 0.00 4.08
671 1477 8.983702 ATTTTCCCTTAATATTTGCATGCAAT 57.016 26.923 32.27 22.93 35.70 3.56
688 1494 4.505808 TGCAATGATTTAATGCACCTTGG 58.494 39.130 0.00 0.00 44.52 3.61
689 1495 4.222366 TGCAATGATTTAATGCACCTTGGA 59.778 37.500 0.00 0.00 44.52 3.53
690 1496 5.177326 GCAATGATTTAATGCACCTTGGAA 58.823 37.500 0.00 0.00 39.81 3.53
691 1497 5.818857 GCAATGATTTAATGCACCTTGGAAT 59.181 36.000 0.00 0.00 39.81 3.01
692 1498 6.018507 GCAATGATTTAATGCACCTTGGAATC 60.019 38.462 0.00 0.00 39.81 2.52
693 1499 7.270047 CAATGATTTAATGCACCTTGGAATCT 58.730 34.615 0.00 0.00 0.00 2.40
694 1500 6.211587 TGATTTAATGCACCTTGGAATCTG 57.788 37.500 0.00 0.00 0.00 2.90
695 1501 5.951148 TGATTTAATGCACCTTGGAATCTGA 59.049 36.000 0.00 0.00 0.00 3.27
696 1502 6.436847 TGATTTAATGCACCTTGGAATCTGAA 59.563 34.615 0.00 0.00 0.00 3.02
697 1503 5.643379 TTAATGCACCTTGGAATCTGAAC 57.357 39.130 0.00 0.00 0.00 3.18
698 1504 2.655090 TGCACCTTGGAATCTGAACA 57.345 45.000 0.00 0.00 0.00 3.18
699 1505 3.159213 TGCACCTTGGAATCTGAACAT 57.841 42.857 0.00 0.00 0.00 2.71
700 1506 2.821378 TGCACCTTGGAATCTGAACATG 59.179 45.455 0.00 0.00 0.00 3.21
701 1507 2.821969 GCACCTTGGAATCTGAACATGT 59.178 45.455 0.00 0.00 0.00 3.21
702 1508 3.366679 GCACCTTGGAATCTGAACATGTG 60.367 47.826 0.00 0.00 0.00 3.21
703 1509 4.074259 CACCTTGGAATCTGAACATGTGA 58.926 43.478 0.00 0.00 0.00 3.58
704 1510 4.703575 CACCTTGGAATCTGAACATGTGAT 59.296 41.667 0.00 0.00 0.00 3.06
705 1511 4.703575 ACCTTGGAATCTGAACATGTGATG 59.296 41.667 0.00 0.00 0.00 3.07
707 1513 5.392703 CCTTGGAATCTGAACATGTGATGTG 60.393 44.000 0.00 0.00 44.07 3.21
708 1514 4.011698 TGGAATCTGAACATGTGATGTGG 58.988 43.478 0.00 0.00 44.07 4.17
709 1515 4.263418 TGGAATCTGAACATGTGATGTGGA 60.263 41.667 0.00 0.00 44.07 4.02
710 1516 4.701651 GGAATCTGAACATGTGATGTGGAA 59.298 41.667 0.00 0.00 44.07 3.53
711 1517 5.392380 GGAATCTGAACATGTGATGTGGAAC 60.392 44.000 0.00 0.00 44.07 3.62
737 1543 9.883142 CAACCAAATTAAGCCTTATAAAATGGA 57.117 29.630 0.00 0.00 31.58 3.41
760 1566 9.762933 TGGAAAAACTGAAATTTTGAGATAAGG 57.237 29.630 2.47 0.00 32.12 2.69
762 1568 8.607441 AAAAACTGAAATTTTGAGATAAGGCC 57.393 30.769 2.47 0.00 32.12 5.19
763 1569 7.544804 AAACTGAAATTTTGAGATAAGGCCT 57.455 32.000 0.00 0.00 0.00 5.19
771 1577 7.745620 ATTTTGAGATAAGGCCTATAAACCG 57.254 36.000 5.16 0.00 0.00 4.44
773 1579 4.485875 TGAGATAAGGCCTATAAACCGGA 58.514 43.478 9.46 0.00 0.00 5.14
775 1581 5.367352 TGAGATAAGGCCTATAAACCGGAAA 59.633 40.000 9.46 0.00 0.00 3.13
786 1592 2.265526 AACCGGAAAGGAGGGAGTAT 57.734 50.000 9.46 0.00 45.00 2.12
787 1593 3.409804 AACCGGAAAGGAGGGAGTATA 57.590 47.619 9.46 0.00 45.00 1.47
789 1595 3.727948 ACCGGAAAGGAGGGAGTATAAA 58.272 45.455 9.46 0.00 45.00 1.40
790 1596 3.453717 ACCGGAAAGGAGGGAGTATAAAC 59.546 47.826 9.46 0.00 45.00 2.01
829 2079 2.018542 TAGTGGCATTTAGTGTCCGC 57.981 50.000 0.00 0.00 35.84 5.54
901 2151 1.074872 GGAAACCGCGAACTCCGTAG 61.075 60.000 8.23 0.00 41.15 3.51
942 2192 3.396560 GTTGTGTCTGTACTACCAACCC 58.603 50.000 14.75 2.05 0.00 4.11
1379 2642 7.093509 GGTTGCTCTTATTATTTCTTTTCCCCA 60.094 37.037 0.00 0.00 0.00 4.96
1381 2644 6.094881 TGCTCTTATTATTTCTTTTCCCCACG 59.905 38.462 0.00 0.00 0.00 4.94
1506 2769 2.983898 TGGCTCCTTACCTTAGGTTTGT 59.016 45.455 10.01 0.00 37.09 2.83
1507 2770 4.169666 TGGCTCCTTACCTTAGGTTTGTA 58.830 43.478 10.01 0.00 37.09 2.41
1586 2849 5.931441 ATTGATTATTCGCTCTGTTAGGC 57.069 39.130 0.00 0.00 0.00 3.93
1604 2867 7.548097 TGTTAGGCTTTTATCTGAGACTAGTG 58.452 38.462 0.00 0.00 35.07 2.74
1612 2875 8.603242 TTTTATCTGAGACTAGTGTTTCAACC 57.397 34.615 0.00 0.00 36.96 3.77
1647 2910 6.129053 TGTTGTTTTGCATTGAAAAATCCC 57.871 33.333 5.84 0.00 0.00 3.85
1659 2922 3.054728 TGAAAAATCCCGGCTCTGTGATA 60.055 43.478 0.00 0.00 0.00 2.15
1681 2951 4.672587 TCACTATTTGGCTGCTAGGTAG 57.327 45.455 0.00 2.66 0.00 3.18
1682 2952 3.388024 TCACTATTTGGCTGCTAGGTAGG 59.612 47.826 0.00 0.00 0.00 3.18
1697 2967 4.319037 AGGTAGGAGTAGTTGCTAGTGT 57.681 45.455 0.00 0.00 29.51 3.55
1708 2978 1.254026 TGCTAGTGTTACGAGCCAGT 58.746 50.000 10.73 0.00 44.65 4.00
1786 3056 3.009584 GGGAAGTTGAGGATTCCAGTTCT 59.990 47.826 5.29 0.00 45.70 3.01
1795 3065 3.782523 AGGATTCCAGTTCTCTATTGCCA 59.217 43.478 5.29 0.00 0.00 4.92
1801 3071 5.488341 TCCAGTTCTCTATTGCCAACTTAC 58.512 41.667 0.00 0.00 0.00 2.34
1869 3139 3.084786 GTTCAGTATTGCCCTGAGCTTT 58.915 45.455 0.00 0.00 44.23 3.51
1887 3157 2.178912 TTGGTCGACAAAGATCCACC 57.821 50.000 18.91 0.00 35.79 4.61
1912 3182 1.842562 AGTGCCATTGGAGCTGTAGAT 59.157 47.619 6.95 0.00 0.00 1.98
2007 3277 7.552687 AGACCATCTTCAATTGCTTAACGATTA 59.447 33.333 0.00 0.00 30.67 1.75
2016 3286 4.974368 TGCTTAACGATTACAATTGGGG 57.026 40.909 10.83 0.00 0.00 4.96
2143 3413 6.506500 AGACCATCTTCAATTGCTTAACAG 57.493 37.500 0.00 0.00 0.00 3.16
2203 3474 1.406887 CCCCATCTGTACTTCAACCCG 60.407 57.143 0.00 0.00 0.00 5.28
2206 3477 2.259618 CATCTGTACTTCAACCCGTCG 58.740 52.381 0.00 0.00 0.00 5.12
2250 3521 6.025749 TCTTCTGTGGTGTCAGTAATGTAG 57.974 41.667 0.00 0.00 36.85 2.74
2255 3681 6.150641 TCTGTGGTGTCAGTAATGTAGTACTC 59.849 42.308 0.00 0.00 36.85 2.59
2256 3682 5.184479 TGTGGTGTCAGTAATGTAGTACTCC 59.816 44.000 0.00 0.00 31.78 3.85
2257 3683 4.708421 TGGTGTCAGTAATGTAGTACTCCC 59.292 45.833 0.00 0.00 31.78 4.30
2258 3684 4.954826 GGTGTCAGTAATGTAGTACTCCCT 59.045 45.833 0.00 0.00 31.78 4.20
2259 3685 5.421374 GGTGTCAGTAATGTAGTACTCCCTT 59.579 44.000 0.00 0.00 31.78 3.95
2260 3686 6.405619 GGTGTCAGTAATGTAGTACTCCCTTC 60.406 46.154 0.00 0.00 31.78 3.46
2261 3687 5.356190 TGTCAGTAATGTAGTACTCCCTTCG 59.644 44.000 0.00 0.00 31.78 3.79
2262 3688 5.356470 GTCAGTAATGTAGTACTCCCTTCGT 59.644 44.000 0.00 0.00 31.78 3.85
2263 3689 5.948162 TCAGTAATGTAGTACTCCCTTCGTT 59.052 40.000 0.00 0.00 31.78 3.85
2264 3690 6.094603 TCAGTAATGTAGTACTCCCTTCGTTC 59.905 42.308 0.00 0.00 31.78 3.95
2265 3691 4.732672 AATGTAGTACTCCCTTCGTTCC 57.267 45.455 0.00 0.00 0.00 3.62
2266 3692 3.159213 TGTAGTACTCCCTTCGTTCCA 57.841 47.619 0.00 0.00 0.00 3.53
2267 3693 3.499338 TGTAGTACTCCCTTCGTTCCAA 58.501 45.455 0.00 0.00 0.00 3.53
2268 3694 3.896888 TGTAGTACTCCCTTCGTTCCAAA 59.103 43.478 0.00 0.00 0.00 3.28
2269 3695 4.344679 TGTAGTACTCCCTTCGTTCCAAAA 59.655 41.667 0.00 0.00 0.00 2.44
2270 3696 4.635699 AGTACTCCCTTCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
2271 3697 5.750352 AGTACTCCCTTCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
2272 3698 6.309389 AGTACTCCCTTCGTTCCAAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
2273 3699 7.427989 AGTACTCCCTTCGTTCCAAAATATA 57.572 36.000 0.00 0.00 0.00 0.86
2274 3700 7.498443 AGTACTCCCTTCGTTCCAAAATATAG 58.502 38.462 0.00 0.00 0.00 1.31
2275 3701 6.309389 ACTCCCTTCGTTCCAAAATATAGT 57.691 37.500 0.00 0.00 0.00 2.12
2276 3702 6.113411 ACTCCCTTCGTTCCAAAATATAGTG 58.887 40.000 0.00 0.00 0.00 2.74
2277 3703 4.879545 TCCCTTCGTTCCAAAATATAGTGC 59.120 41.667 0.00 0.00 0.00 4.40
2278 3704 4.260620 CCCTTCGTTCCAAAATATAGTGCG 60.261 45.833 0.00 0.00 0.00 5.34
2279 3705 4.331717 CCTTCGTTCCAAAATATAGTGCGT 59.668 41.667 0.00 0.00 0.00 5.24
2280 3706 5.459110 TTCGTTCCAAAATATAGTGCGTC 57.541 39.130 0.00 0.00 0.00 5.19
2281 3707 3.866910 TCGTTCCAAAATATAGTGCGTCC 59.133 43.478 0.00 0.00 0.00 4.79
2282 3708 3.869246 CGTTCCAAAATATAGTGCGTCCT 59.131 43.478 0.00 0.00 0.00 3.85
2283 3709 4.331717 CGTTCCAAAATATAGTGCGTCCTT 59.668 41.667 0.00 0.00 0.00 3.36
2284 3710 5.569413 GTTCCAAAATATAGTGCGTCCTTG 58.431 41.667 0.00 0.00 0.00 3.61
2285 3711 5.092554 TCCAAAATATAGTGCGTCCTTGA 57.907 39.130 0.00 0.00 0.00 3.02
2286 3712 5.492895 TCCAAAATATAGTGCGTCCTTGAA 58.507 37.500 0.00 0.00 0.00 2.69
2287 3713 5.353123 TCCAAAATATAGTGCGTCCTTGAAC 59.647 40.000 0.00 0.00 0.00 3.18
2288 3714 5.448632 CCAAAATATAGTGCGTCCTTGAACC 60.449 44.000 0.00 0.00 0.00 3.62
2289 3715 4.755266 AATATAGTGCGTCCTTGAACCT 57.245 40.909 0.00 0.00 0.00 3.50
2290 3716 2.674796 ATAGTGCGTCCTTGAACCTC 57.325 50.000 0.00 0.00 0.00 3.85
2291 3717 0.242825 TAGTGCGTCCTTGAACCTCG 59.757 55.000 0.00 0.00 0.00 4.63
2292 3718 2.027625 GTGCGTCCTTGAACCTCGG 61.028 63.158 0.00 0.00 0.00 4.63
2293 3719 2.434359 GCGTCCTTGAACCTCGGG 60.434 66.667 0.00 0.00 0.00 5.14
2294 3720 2.939261 GCGTCCTTGAACCTCGGGA 61.939 63.158 0.00 0.00 0.00 5.14
2295 3721 1.669440 CGTCCTTGAACCTCGGGAA 59.331 57.895 0.00 0.00 0.00 3.97
2296 3722 0.389948 CGTCCTTGAACCTCGGGAAG 60.390 60.000 0.00 0.00 0.00 3.46
2297 3723 0.673956 GTCCTTGAACCTCGGGAAGC 60.674 60.000 0.00 0.00 0.00 3.86
2298 3724 1.741770 CCTTGAACCTCGGGAAGCG 60.742 63.158 0.00 0.00 0.00 4.68
2299 3725 2.358247 TTGAACCTCGGGAAGCGC 60.358 61.111 0.00 0.00 0.00 5.92
2300 3726 4.735132 TGAACCTCGGGAAGCGCG 62.735 66.667 0.00 0.00 41.10 6.86
2315 3741 3.041940 GCGGGCGCGCTATATGTT 61.042 61.111 37.00 0.00 0.00 2.71
2316 3742 2.853210 CGGGCGCGCTATATGTTG 59.147 61.111 32.29 7.97 0.00 3.33
2317 3743 2.667318 CGGGCGCGCTATATGTTGG 61.667 63.158 32.29 5.80 0.00 3.77
2318 3744 1.301401 GGGCGCGCTATATGTTGGA 60.301 57.895 32.29 0.00 0.00 3.53
2319 3745 0.882927 GGGCGCGCTATATGTTGGAA 60.883 55.000 32.29 0.00 0.00 3.53
2320 3746 0.234884 GGCGCGCTATATGTTGGAAC 59.765 55.000 32.29 5.07 0.00 3.62
2321 3747 0.111266 GCGCGCTATATGTTGGAACG 60.111 55.000 26.67 0.00 0.00 3.95
2322 3748 0.506932 CGCGCTATATGTTGGAACGG 59.493 55.000 5.56 0.00 0.00 4.44
2323 3749 1.860676 GCGCTATATGTTGGAACGGA 58.139 50.000 0.00 0.00 0.00 4.69
2324 3750 1.792949 GCGCTATATGTTGGAACGGAG 59.207 52.381 0.00 0.00 0.00 4.63
2325 3751 2.404215 CGCTATATGTTGGAACGGAGG 58.596 52.381 0.00 0.00 0.00 4.30
2326 3752 2.767505 GCTATATGTTGGAACGGAGGG 58.232 52.381 0.00 0.00 0.00 4.30
2331 3757 1.946984 TGTTGGAACGGAGGGAGTAT 58.053 50.000 0.00 0.00 0.00 2.12
2356 3782 6.798427 TTATGGACTATGAACTGCTCTTCT 57.202 37.500 0.00 0.00 0.00 2.85
2389 3815 6.039605 TCACATGGTGTTGCTATGAAATATGG 59.960 38.462 0.00 0.00 38.19 2.74
2423 3849 8.652810 ACGTTAAGTACAGTCATTACTTGTTT 57.347 30.769 5.25 0.00 39.57 2.83
2428 3854 2.890945 ACAGTCATTACTTGTTTGGCCC 59.109 45.455 0.00 0.00 31.97 5.80
2464 3890 6.552859 TGTTGTACATGTTGTGGTTCTATG 57.447 37.500 2.30 0.00 0.00 2.23
2468 3896 6.760291 TGTACATGTTGTGGTTCTATGTGTA 58.240 36.000 2.30 0.00 34.22 2.90
2524 3952 2.091744 GCAGCGAAGTTACCGTACTTTC 59.908 50.000 0.00 0.00 38.43 2.62
2541 3980 3.829026 ACTTTCCATTTTCTGCCTCTTCC 59.171 43.478 0.00 0.00 0.00 3.46
2635 4077 9.880157 AGTTGTAACGGTGTACTAATTCATATT 57.120 29.630 0.00 0.00 0.00 1.28
2636 4078 9.910511 GTTGTAACGGTGTACTAATTCATATTG 57.089 33.333 0.00 0.00 0.00 1.90
2659 4101 2.634639 TCTGGTGTACCATACCACCT 57.365 50.000 3.88 0.00 46.46 4.00
2708 4150 1.605457 GCTGTGGGCTTACTTTTTGCC 60.605 52.381 0.00 0.00 45.42 4.52
2711 4153 1.686587 GTGGGCTTACTTTTTGCCTGT 59.313 47.619 0.00 0.00 45.45 4.00
2744 4186 9.806203 CTTTGCACATTTTCTATCCATGAATTA 57.194 29.630 0.00 0.00 0.00 1.40
2811 4253 2.354510 TGCTGTTTCCAGAACGAACTTG 59.645 45.455 0.00 0.00 41.50 3.16
2841 4283 0.747283 CTGATGAGAGCTGGTTGCCC 60.747 60.000 0.00 0.00 44.23 5.36
3044 4569 6.496565 TCTTTCCCAATGCTATGAAGGAAAAA 59.503 34.615 0.00 0.00 41.48 1.94
3103 4628 2.073816 GGTACGATTCAAGGTGGTGTG 58.926 52.381 0.00 0.00 0.00 3.82
3231 4756 1.736681 AGAGAAGCTTCGCAATTCAGC 59.263 47.619 28.48 8.54 0.00 4.26
3411 4936 2.045045 CCCGGCCTTTGCATCTGA 60.045 61.111 0.00 0.00 40.13 3.27
3484 5009 8.363761 AGTAATACCACAGTAAGACTAAAGCT 57.636 34.615 0.00 0.00 29.93 3.74
3554 5079 0.474184 GCAGATAGCCTGGGCCTAAA 59.526 55.000 4.53 0.00 43.13 1.85
3660 5185 2.885861 CGTGCTCTTAGAGGCCGT 59.114 61.111 11.54 0.00 0.00 5.68
3718 5243 2.089201 CTGATGCATCAACCTTGCTCA 58.911 47.619 28.39 5.03 40.77 4.26
3733 5258 2.222886 TGCTCAGTCTAGCTATCGTCC 58.777 52.381 0.00 0.00 43.19 4.79
3735 5260 2.817258 GCTCAGTCTAGCTATCGTCCAT 59.183 50.000 0.00 0.00 39.50 3.41
4012 5540 1.503542 CTGCTCCACAAACGATGCC 59.496 57.895 0.00 0.00 0.00 4.40
4054 5582 4.155733 TGCCGCCATCGTCCGATT 62.156 61.111 0.00 0.00 31.62 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.249559 GCCATGAGGATGAAATCGAAGTC 59.750 47.826 0.00 0.00 46.86 3.01
1 2 3.209410 GCCATGAGGATGAAATCGAAGT 58.791 45.455 0.00 0.00 46.86 3.01
2 3 2.222678 CGCCATGAGGATGAAATCGAAG 59.777 50.000 0.00 0.00 46.86 3.79
3 4 2.212652 CGCCATGAGGATGAAATCGAA 58.787 47.619 0.00 0.00 46.86 3.71
4 5 1.138859 ACGCCATGAGGATGAAATCGA 59.861 47.619 0.00 0.00 46.86 3.59
5 6 1.586422 ACGCCATGAGGATGAAATCG 58.414 50.000 0.00 0.00 46.86 3.34
6 7 3.129287 ACAAACGCCATGAGGATGAAATC 59.871 43.478 0.00 0.00 44.55 2.17
7 8 3.091545 ACAAACGCCATGAGGATGAAAT 58.908 40.909 0.00 0.00 36.89 2.17
8 9 2.513753 ACAAACGCCATGAGGATGAAA 58.486 42.857 0.00 0.00 36.89 2.69
9 10 2.198827 ACAAACGCCATGAGGATGAA 57.801 45.000 0.00 0.00 36.89 2.57
71 72 2.504367 ACCCAAAACGTCCTTCATGAG 58.496 47.619 0.00 0.00 0.00 2.90
79 80 2.164827 ACACTTGAAACCCAAAACGTCC 59.835 45.455 0.00 0.00 33.76 4.79
84 85 5.357314 TCAACGATACACTTGAAACCCAAAA 59.643 36.000 0.00 0.00 33.76 2.44
85 86 4.882427 TCAACGATACACTTGAAACCCAAA 59.118 37.500 0.00 0.00 33.76 3.28
110 133 5.107453 GGTTGTAGAAGAAGACGATGTTGTG 60.107 44.000 0.00 0.00 0.00 3.33
128 151 6.625300 GCAAATACTCGAGAGAAGAGGTTGTA 60.625 42.308 21.68 0.00 41.32 2.41
154 177 5.343058 CCAAGTCAAACAAACGATATTGCTG 59.657 40.000 0.00 0.00 33.52 4.41
188 211 6.952773 AACTGAAATAGGCAAACAACTGTA 57.047 33.333 0.00 0.00 0.00 2.74
197 220 4.832266 ACCATCACAAACTGAAATAGGCAA 59.168 37.500 0.00 0.00 30.60 4.52
205 228 3.066064 CCGTTGAACCATCACAAACTGAA 59.934 43.478 0.00 0.00 34.61 3.02
214 237 5.533154 AGAAACAAATACCGTTGAACCATCA 59.467 36.000 0.00 0.00 32.59 3.07
225 248 6.796705 AGACCTGTAAAGAAACAAATACCG 57.203 37.500 0.00 0.00 0.00 4.02
227 250 7.918562 TGCAAAGACCTGTAAAGAAACAAATAC 59.081 33.333 0.00 0.00 0.00 1.89
294 317 2.165641 TGTACCACCATAGCTCTCGTTG 59.834 50.000 0.00 0.00 0.00 4.10
295 318 2.453521 TGTACCACCATAGCTCTCGTT 58.546 47.619 0.00 0.00 0.00 3.85
338 361 4.401202 CCCCGCAAAAAGAAATACCACTAT 59.599 41.667 0.00 0.00 0.00 2.12
341 364 2.297880 ACCCCGCAAAAAGAAATACCAC 59.702 45.455 0.00 0.00 0.00 4.16
344 367 3.239254 CGAACCCCGCAAAAAGAAATAC 58.761 45.455 0.00 0.00 0.00 1.89
345 368 2.885894 ACGAACCCCGCAAAAAGAAATA 59.114 40.909 0.00 0.00 43.32 1.40
350 373 2.591133 CAATACGAACCCCGCAAAAAG 58.409 47.619 0.00 0.00 43.32 2.27
375 401 4.662278 TGAGACCCTAAACAAATGGAAGG 58.338 43.478 0.00 0.00 0.00 3.46
394 420 8.993121 GGTAACTGATCCACATACATAAATGAG 58.007 37.037 0.00 0.00 0.00 2.90
466 1223 3.778629 AGCCCTATAAACCGAAAAGGAGA 59.221 43.478 0.00 0.00 45.00 3.71
471 1228 5.946972 TGAATTGAGCCCTATAAACCGAAAA 59.053 36.000 0.00 0.00 0.00 2.29
473 1230 5.105567 TGAATTGAGCCCTATAAACCGAA 57.894 39.130 0.00 0.00 0.00 4.30
474 1231 4.764050 TGAATTGAGCCCTATAAACCGA 57.236 40.909 0.00 0.00 0.00 4.69
475 1232 5.828299 TTTGAATTGAGCCCTATAAACCG 57.172 39.130 0.00 0.00 0.00 4.44
483 1240 5.718130 TGATGAGATTTTTGAATTGAGCCCT 59.282 36.000 0.00 0.00 0.00 5.19
484 1241 5.969423 TGATGAGATTTTTGAATTGAGCCC 58.031 37.500 0.00 0.00 0.00 5.19
488 1245 7.874016 CCTTGGTTGATGAGATTTTTGAATTGA 59.126 33.333 0.00 0.00 0.00 2.57
489 1246 7.658575 ACCTTGGTTGATGAGATTTTTGAATTG 59.341 33.333 0.00 0.00 0.00 2.32
492 1249 6.729690 ACCTTGGTTGATGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
493 1250 9.699410 ATATACCTTGGTTGATGAGATTTTTGA 57.301 29.630 0.00 0.00 0.00 2.69
494 1251 9.740239 CATATACCTTGGTTGATGAGATTTTTG 57.260 33.333 0.00 0.00 0.00 2.44
495 1252 8.917088 CCATATACCTTGGTTGATGAGATTTTT 58.083 33.333 12.41 0.00 0.00 1.94
498 1255 7.000472 CACCATATACCTTGGTTGATGAGATT 59.000 38.462 12.41 0.00 45.19 2.40
499 1256 6.329986 TCACCATATACCTTGGTTGATGAGAT 59.670 38.462 12.41 0.00 45.19 2.75
501 1258 5.928976 TCACCATATACCTTGGTTGATGAG 58.071 41.667 12.41 7.38 45.19 2.90
504 1261 5.397899 CCACTCACCATATACCTTGGTTGAT 60.398 44.000 0.00 0.00 45.19 2.57
506 1263 4.199310 CCACTCACCATATACCTTGGTTG 58.801 47.826 0.00 0.00 45.19 3.77
507 1264 3.850173 ACCACTCACCATATACCTTGGTT 59.150 43.478 0.00 0.00 45.19 3.67
514 1271 6.420913 AGTATTCCACCACTCACCATATAC 57.579 41.667 0.00 0.00 0.00 1.47
515 1272 7.446106 AAAGTATTCCACCACTCACCATATA 57.554 36.000 0.00 0.00 0.00 0.86
517 1274 5.772393 AAAGTATTCCACCACTCACCATA 57.228 39.130 0.00 0.00 0.00 2.74
520 1277 4.583073 ACAAAAAGTATTCCACCACTCACC 59.417 41.667 0.00 0.00 0.00 4.02
523 1280 7.506328 AACTACAAAAAGTATTCCACCACTC 57.494 36.000 0.00 0.00 30.93 3.51
525 1282 6.419710 GCAAACTACAAAAAGTATTCCACCAC 59.580 38.462 0.00 0.00 30.93 4.16
527 1284 6.508777 TGCAAACTACAAAAAGTATTCCACC 58.491 36.000 0.00 0.00 30.93 4.61
529 1286 9.092876 CTTTTGCAAACTACAAAAAGTATTCCA 57.907 29.630 12.39 0.00 44.07 3.53
530 1287 8.061857 GCTTTTGCAAACTACAAAAAGTATTCC 58.938 33.333 12.39 0.00 44.07 3.01
531 1288 8.972073 GCTTTTGCAAACTACAAAAAGTATTC 57.028 30.769 12.39 0.00 44.07 1.75
627 1433 6.650390 GGAAAATTGACCAATGCATGTACTTT 59.350 34.615 0.00 0.00 0.00 2.66
628 1434 6.165577 GGAAAATTGACCAATGCATGTACTT 58.834 36.000 0.00 0.00 0.00 2.24
630 1436 4.869861 GGGAAAATTGACCAATGCATGTAC 59.130 41.667 0.00 0.00 0.00 2.90
631 1437 4.776837 AGGGAAAATTGACCAATGCATGTA 59.223 37.500 0.00 0.00 0.00 2.29
632 1438 3.583966 AGGGAAAATTGACCAATGCATGT 59.416 39.130 0.00 0.00 0.00 3.21
633 1439 4.210724 AGGGAAAATTGACCAATGCATG 57.789 40.909 0.00 0.00 0.00 4.06
634 1440 4.914177 AAGGGAAAATTGACCAATGCAT 57.086 36.364 0.00 0.00 0.00 3.96
635 1441 5.815233 TTAAGGGAAAATTGACCAATGCA 57.185 34.783 0.00 0.00 0.00 3.96
636 1442 8.962884 AATATTAAGGGAAAATTGACCAATGC 57.037 30.769 0.00 0.00 0.00 3.56
640 1446 7.911651 TGCAAATATTAAGGGAAAATTGACCA 58.088 30.769 0.00 0.00 0.00 4.02
641 1447 8.829612 CATGCAAATATTAAGGGAAAATTGACC 58.170 33.333 0.00 0.00 0.00 4.02
643 1449 8.045507 TGCATGCAAATATTAAGGGAAAATTGA 58.954 29.630 20.30 0.00 0.00 2.57
644 1450 8.211116 TGCATGCAAATATTAAGGGAAAATTG 57.789 30.769 20.30 0.00 0.00 2.32
645 1451 8.804912 TTGCATGCAAATATTAAGGGAAAATT 57.195 26.923 30.19 0.00 32.44 1.82
646 1452 8.842280 CATTGCATGCAAATATTAAGGGAAAAT 58.158 29.630 34.84 11.43 39.55 1.82
647 1453 8.045507 TCATTGCATGCAAATATTAAGGGAAAA 58.954 29.630 34.84 8.63 39.55 2.29
648 1454 7.563020 TCATTGCATGCAAATATTAAGGGAAA 58.437 30.769 34.84 9.33 39.55 3.13
649 1455 7.122138 TCATTGCATGCAAATATTAAGGGAA 57.878 32.000 34.84 9.80 39.55 3.97
650 1456 6.728089 TCATTGCATGCAAATATTAAGGGA 57.272 33.333 34.84 17.60 39.55 4.20
651 1457 7.972832 AATCATTGCATGCAAATATTAAGGG 57.027 32.000 34.84 15.88 39.55 3.95
656 1462 8.841300 TGCATTAAATCATTGCATGCAAATATT 58.159 25.926 34.84 29.57 40.64 1.28
657 1463 8.286800 GTGCATTAAATCATTGCATGCAAATAT 58.713 29.630 34.84 26.25 46.90 1.28
658 1464 7.254829 GGTGCATTAAATCATTGCATGCAAATA 60.255 33.333 34.84 25.30 46.90 1.40
659 1465 6.459024 GGTGCATTAAATCATTGCATGCAAAT 60.459 34.615 34.84 22.58 46.90 2.32
660 1466 5.163744 GGTGCATTAAATCATTGCATGCAAA 60.164 36.000 34.84 21.31 46.90 3.68
661 1467 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
662 1468 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
663 1469 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
664 1470 5.007234 CCAAGGTGCATTAAATCATTGCATG 59.993 40.000 4.14 0.00 46.90 4.06
665 1471 5.104859 TCCAAGGTGCATTAAATCATTGCAT 60.105 36.000 4.14 0.00 46.90 3.96
666 1472 4.222366 TCCAAGGTGCATTAAATCATTGCA 59.778 37.500 0.00 0.00 43.63 4.08
667 1473 4.757594 TCCAAGGTGCATTAAATCATTGC 58.242 39.130 0.00 0.00 36.91 3.56
668 1474 7.223971 CAGATTCCAAGGTGCATTAAATCATTG 59.776 37.037 0.00 0.00 0.00 2.82
669 1475 7.124599 TCAGATTCCAAGGTGCATTAAATCATT 59.875 33.333 0.00 0.00 0.00 2.57
670 1476 6.608405 TCAGATTCCAAGGTGCATTAAATCAT 59.392 34.615 0.00 0.00 0.00 2.45
671 1477 5.951148 TCAGATTCCAAGGTGCATTAAATCA 59.049 36.000 0.00 0.00 0.00 2.57
672 1478 6.455360 TCAGATTCCAAGGTGCATTAAATC 57.545 37.500 0.00 0.00 0.00 2.17
673 1479 6.211184 TGTTCAGATTCCAAGGTGCATTAAAT 59.789 34.615 0.00 0.00 0.00 1.40
674 1480 5.538053 TGTTCAGATTCCAAGGTGCATTAAA 59.462 36.000 0.00 0.00 0.00 1.52
675 1481 5.076182 TGTTCAGATTCCAAGGTGCATTAA 58.924 37.500 0.00 0.00 0.00 1.40
676 1482 4.661222 TGTTCAGATTCCAAGGTGCATTA 58.339 39.130 0.00 0.00 0.00 1.90
677 1483 3.499338 TGTTCAGATTCCAAGGTGCATT 58.501 40.909 0.00 0.00 0.00 3.56
678 1484 3.159213 TGTTCAGATTCCAAGGTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
679 1485 2.655090 TGTTCAGATTCCAAGGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
680 1486 2.821969 ACATGTTCAGATTCCAAGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
681 1487 4.074259 TCACATGTTCAGATTCCAAGGTG 58.926 43.478 0.00 0.00 0.00 4.00
682 1488 4.371624 TCACATGTTCAGATTCCAAGGT 57.628 40.909 0.00 0.00 0.00 3.50
683 1489 4.703575 ACATCACATGTTCAGATTCCAAGG 59.296 41.667 0.00 0.00 41.63 3.61
684 1490 5.392703 CCACATCACATGTTCAGATTCCAAG 60.393 44.000 0.00 0.00 42.70 3.61
685 1491 4.460034 CCACATCACATGTTCAGATTCCAA 59.540 41.667 0.00 0.00 42.70 3.53
686 1492 4.011698 CCACATCACATGTTCAGATTCCA 58.988 43.478 0.00 0.00 42.70 3.53
687 1493 4.264253 TCCACATCACATGTTCAGATTCC 58.736 43.478 0.00 0.00 42.70 3.01
688 1494 5.181811 TGTTCCACATCACATGTTCAGATTC 59.818 40.000 0.00 0.00 42.70 2.52
689 1495 5.072055 TGTTCCACATCACATGTTCAGATT 58.928 37.500 0.00 0.00 42.70 2.40
690 1496 4.654915 TGTTCCACATCACATGTTCAGAT 58.345 39.130 0.00 0.00 42.70 2.90
691 1497 4.084011 TGTTCCACATCACATGTTCAGA 57.916 40.909 0.00 0.00 42.70 3.27
692 1498 4.539870 GTTGTTCCACATCACATGTTCAG 58.460 43.478 0.00 0.00 42.70 3.02
693 1499 3.317711 GGTTGTTCCACATCACATGTTCA 59.682 43.478 0.00 0.00 42.70 3.18
694 1500 3.317711 TGGTTGTTCCACATCACATGTTC 59.682 43.478 0.00 0.00 42.70 3.18
695 1501 3.295093 TGGTTGTTCCACATCACATGTT 58.705 40.909 0.00 0.00 42.70 2.71
696 1502 2.942804 TGGTTGTTCCACATCACATGT 58.057 42.857 0.00 0.00 46.22 3.21
706 1512 6.926630 ATAAGGCTTAATTTGGTTGTTCCA 57.073 33.333 11.59 0.00 45.60 3.53
707 1513 9.713713 TTTTATAAGGCTTAATTTGGTTGTTCC 57.286 29.630 11.59 0.00 0.00 3.62
710 1516 9.665719 CCATTTTATAAGGCTTAATTTGGTTGT 57.334 29.630 11.59 0.00 0.00 3.32
711 1517 9.883142 TCCATTTTATAAGGCTTAATTTGGTTG 57.117 29.630 11.59 4.00 0.00 3.77
734 1540 9.762933 CCTTATCTCAAAATTTCAGTTTTTCCA 57.237 29.630 0.00 0.00 0.00 3.53
737 1543 8.432013 AGGCCTTATCTCAAAATTTCAGTTTTT 58.568 29.630 0.00 0.00 0.00 1.94
739 1545 7.544804 AGGCCTTATCTCAAAATTTCAGTTT 57.455 32.000 0.00 0.00 0.00 2.66
741 1547 9.920946 TTATAGGCCTTATCTCAAAATTTCAGT 57.079 29.630 12.58 0.00 0.00 3.41
744 1550 9.967346 GGTTTATAGGCCTTATCTCAAAATTTC 57.033 33.333 12.58 0.00 0.00 2.17
745 1551 8.630037 CGGTTTATAGGCCTTATCTCAAAATTT 58.370 33.333 12.58 0.00 0.00 1.82
746 1552 7.230712 CCGGTTTATAGGCCTTATCTCAAAATT 59.769 37.037 12.58 0.00 0.00 1.82
747 1553 6.715264 CCGGTTTATAGGCCTTATCTCAAAAT 59.285 38.462 12.58 0.00 0.00 1.82
748 1554 6.059484 CCGGTTTATAGGCCTTATCTCAAAA 58.941 40.000 12.58 0.00 0.00 2.44
749 1555 5.367352 TCCGGTTTATAGGCCTTATCTCAAA 59.633 40.000 12.58 0.00 0.00 2.69
751 1557 4.485875 TCCGGTTTATAGGCCTTATCTCA 58.514 43.478 12.58 0.00 0.00 3.27
752 1558 5.479124 TTCCGGTTTATAGGCCTTATCTC 57.521 43.478 12.58 0.00 0.00 2.75
753 1559 5.221864 CCTTTCCGGTTTATAGGCCTTATCT 60.222 44.000 12.58 0.00 0.00 1.98
756 1562 4.039339 TCCTTTCCGGTTTATAGGCCTTA 58.961 43.478 12.58 0.00 0.00 2.69
758 1564 2.438392 CTCCTTTCCGGTTTATAGGCCT 59.562 50.000 11.78 11.78 0.00 5.19
760 1566 2.486727 CCCTCCTTTCCGGTTTATAGGC 60.487 54.545 0.00 0.00 0.00 3.93
762 1568 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
763 1569 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
771 1577 7.859026 ATCTAGTTTATACTCCCTCCTTTCC 57.141 40.000 0.00 0.00 35.78 3.13
773 1579 7.783596 TCGAATCTAGTTTATACTCCCTCCTTT 59.216 37.037 0.00 0.00 35.78 3.11
775 1581 6.716173 GTCGAATCTAGTTTATACTCCCTCCT 59.284 42.308 0.00 0.00 35.78 3.69
805 2053 5.065474 GCGGACACTAAATGCCACTAAATTA 59.935 40.000 0.00 0.00 0.00 1.40
822 2072 0.040958 CAGTTGAAAGCTGCGGACAC 60.041 55.000 0.00 0.00 0.00 3.67
829 2079 2.620115 ACACATGACCAGTTGAAAGCTG 59.380 45.455 0.00 0.00 0.00 4.24
893 2143 2.159170 GCTTTCAGCTCATCTACGGAGT 60.159 50.000 0.00 0.00 41.23 3.85
901 2151 1.399791 CCTTTCCGCTTTCAGCTCATC 59.600 52.381 0.00 0.00 39.60 2.92
1222 2476 3.151022 CTCTCCTCGGACCCTGGC 61.151 72.222 0.00 0.00 0.00 4.85
1374 2635 1.874129 ACATTATCAGTCCGTGGGGA 58.126 50.000 0.00 0.00 41.08 4.81
1379 2642 3.756434 CACCCAAAACATTATCAGTCCGT 59.244 43.478 0.00 0.00 0.00 4.69
1381 2644 3.763897 AGCACCCAAAACATTATCAGTCC 59.236 43.478 0.00 0.00 0.00 3.85
1506 2769 7.284919 TCGTAGCTCAGGATTCACAATTATA 57.715 36.000 0.00 0.00 0.00 0.98
1507 2770 6.161855 TCGTAGCTCAGGATTCACAATTAT 57.838 37.500 0.00 0.00 0.00 1.28
1586 2849 8.713271 GGTTGAAACACTAGTCTCAGATAAAAG 58.287 37.037 0.00 0.00 0.00 2.27
1604 2867 6.756542 ACAACAGCTAATTGAAAGGTTGAAAC 59.243 34.615 15.04 0.00 37.97 2.78
1612 2875 6.586868 TGCAAAACAACAGCTAATTGAAAG 57.413 33.333 15.04 5.07 0.00 2.62
1659 2922 4.040952 CCTACCTAGCAGCCAAATAGTGAT 59.959 45.833 0.00 0.00 0.00 3.06
1681 2951 4.660105 CTCGTAACACTAGCAACTACTCC 58.340 47.826 0.00 0.00 0.00 3.85
1682 2952 4.097012 GCTCGTAACACTAGCAACTACTC 58.903 47.826 0.00 0.00 36.95 2.59
1697 2967 1.617322 AGTCAGTCACTGGCTCGTAA 58.383 50.000 5.94 0.00 43.49 3.18
1708 2978 3.569194 TTTGCCAACCTAAGTCAGTCA 57.431 42.857 0.00 0.00 0.00 3.41
1786 3056 4.224147 TGGCACTAGTAAGTTGGCAATAGA 59.776 41.667 1.92 0.00 36.83 1.98
1795 3065 3.264450 AGCTCCAATGGCACTAGTAAGTT 59.736 43.478 0.00 0.00 31.97 2.66
1801 3071 2.432146 TCTACAGCTCCAATGGCACTAG 59.568 50.000 0.00 0.00 0.00 2.57
1869 3139 0.037697 CGGTGGATCTTTGTCGACCA 60.038 55.000 14.12 0.00 44.45 4.02
1887 3157 1.600957 CAGCTCCAATGGCACTAATCG 59.399 52.381 0.00 0.00 0.00 3.34
1912 3182 4.398319 GAATCCTCAACTTCCCTGAACAA 58.602 43.478 0.00 0.00 0.00 2.83
2007 3277 3.379452 TCCAAGTTGTTTCCCCAATTGT 58.621 40.909 4.43 0.00 0.00 2.71
2016 3286 2.287248 GCTGCTCACTCCAAGTTGTTTC 60.287 50.000 1.45 0.00 0.00 2.78
2143 3413 4.269844 CCAAGTTGTTTACCACATTGCAAC 59.730 41.667 0.00 0.00 34.43 4.17
2203 3474 3.123621 ACTCGCATGAAAAATCTGACGAC 59.876 43.478 0.00 0.00 0.00 4.34
2206 3477 5.693814 AGAAACTCGCATGAAAAATCTGAC 58.306 37.500 0.00 0.00 0.00 3.51
2250 3521 7.224167 CACTATATTTTGGAACGAAGGGAGTAC 59.776 40.741 0.00 0.00 0.00 2.73
2255 3681 4.260620 CGCACTATATTTTGGAACGAAGGG 60.261 45.833 0.00 0.00 0.00 3.95
2256 3682 4.331717 ACGCACTATATTTTGGAACGAAGG 59.668 41.667 0.00 0.00 0.00 3.46
2257 3683 5.464965 ACGCACTATATTTTGGAACGAAG 57.535 39.130 0.00 0.00 0.00 3.79
2258 3684 4.330620 GGACGCACTATATTTTGGAACGAA 59.669 41.667 0.00 0.00 0.00 3.85
2259 3685 3.866910 GGACGCACTATATTTTGGAACGA 59.133 43.478 0.00 0.00 0.00 3.85
2260 3686 3.869246 AGGACGCACTATATTTTGGAACG 59.131 43.478 0.00 0.00 0.00 3.95
2261 3687 5.353123 TCAAGGACGCACTATATTTTGGAAC 59.647 40.000 0.00 0.00 0.00 3.62
2262 3688 5.492895 TCAAGGACGCACTATATTTTGGAA 58.507 37.500 0.00 0.00 0.00 3.53
2263 3689 5.092554 TCAAGGACGCACTATATTTTGGA 57.907 39.130 0.00 0.00 0.00 3.53
2264 3690 5.448632 GGTTCAAGGACGCACTATATTTTGG 60.449 44.000 0.00 0.00 0.00 3.28
2265 3691 5.354234 AGGTTCAAGGACGCACTATATTTTG 59.646 40.000 0.00 0.00 0.00 2.44
2266 3692 5.497474 AGGTTCAAGGACGCACTATATTTT 58.503 37.500 0.00 0.00 0.00 1.82
2267 3693 5.099042 AGGTTCAAGGACGCACTATATTT 57.901 39.130 0.00 0.00 0.00 1.40
2268 3694 4.694339 GAGGTTCAAGGACGCACTATATT 58.306 43.478 0.00 0.00 0.00 1.28
2269 3695 3.243434 CGAGGTTCAAGGACGCACTATAT 60.243 47.826 0.00 0.00 0.00 0.86
2270 3696 2.098607 CGAGGTTCAAGGACGCACTATA 59.901 50.000 0.00 0.00 0.00 1.31
2271 3697 1.135083 CGAGGTTCAAGGACGCACTAT 60.135 52.381 0.00 0.00 0.00 2.12
2272 3698 0.242825 CGAGGTTCAAGGACGCACTA 59.757 55.000 0.00 0.00 0.00 2.74
2273 3699 1.006102 CGAGGTTCAAGGACGCACT 60.006 57.895 0.00 0.00 0.00 4.40
2274 3700 2.027625 CCGAGGTTCAAGGACGCAC 61.028 63.158 0.00 0.00 0.00 5.34
2275 3701 2.342279 CCGAGGTTCAAGGACGCA 59.658 61.111 0.00 0.00 0.00 5.24
2276 3702 2.434359 CCCGAGGTTCAAGGACGC 60.434 66.667 0.00 0.00 0.00 5.19
2277 3703 0.389948 CTTCCCGAGGTTCAAGGACG 60.390 60.000 0.00 0.00 0.00 4.79
2278 3704 0.673956 GCTTCCCGAGGTTCAAGGAC 60.674 60.000 0.00 0.00 0.00 3.85
2279 3705 1.677552 GCTTCCCGAGGTTCAAGGA 59.322 57.895 0.00 0.00 0.00 3.36
2280 3706 1.741770 CGCTTCCCGAGGTTCAAGG 60.742 63.158 0.00 0.00 40.02 3.61
2281 3707 2.391389 GCGCTTCCCGAGGTTCAAG 61.391 63.158 0.00 0.00 40.02 3.02
2282 3708 2.358247 GCGCTTCCCGAGGTTCAA 60.358 61.111 0.00 0.00 40.02 2.69
2283 3709 4.735132 CGCGCTTCCCGAGGTTCA 62.735 66.667 5.56 0.00 40.02 3.18
2299 3725 2.667318 CCAACATATAGCGCGCCCG 61.667 63.158 30.33 14.32 37.57 6.13
2300 3726 0.882927 TTCCAACATATAGCGCGCCC 60.883 55.000 30.33 0.16 0.00 6.13
2301 3727 0.234884 GTTCCAACATATAGCGCGCC 59.765 55.000 30.33 10.31 0.00 6.53
2302 3728 0.111266 CGTTCCAACATATAGCGCGC 60.111 55.000 26.66 26.66 0.00 6.86
2303 3729 0.506932 CCGTTCCAACATATAGCGCG 59.493 55.000 0.00 0.00 0.00 6.86
2304 3730 1.792949 CTCCGTTCCAACATATAGCGC 59.207 52.381 0.00 0.00 0.00 5.92
2305 3731 2.404215 CCTCCGTTCCAACATATAGCG 58.596 52.381 0.00 0.00 0.00 4.26
2306 3732 2.367567 TCCCTCCGTTCCAACATATAGC 59.632 50.000 0.00 0.00 0.00 2.97
2307 3733 3.641906 ACTCCCTCCGTTCCAACATATAG 59.358 47.826 0.00 0.00 0.00 1.31
2308 3734 3.649843 ACTCCCTCCGTTCCAACATATA 58.350 45.455 0.00 0.00 0.00 0.86
2309 3735 2.478292 ACTCCCTCCGTTCCAACATAT 58.522 47.619 0.00 0.00 0.00 1.78
2310 3736 1.946984 ACTCCCTCCGTTCCAACATA 58.053 50.000 0.00 0.00 0.00 2.29
2311 3737 1.946984 TACTCCCTCCGTTCCAACAT 58.053 50.000 0.00 0.00 0.00 2.71
2312 3738 1.946984 ATACTCCCTCCGTTCCAACA 58.053 50.000 0.00 0.00 0.00 3.33
2313 3739 4.684484 AATATACTCCCTCCGTTCCAAC 57.316 45.455 0.00 0.00 0.00 3.77
2314 3740 5.247564 CCATAATATACTCCCTCCGTTCCAA 59.752 44.000 0.00 0.00 0.00 3.53
2315 3741 4.775780 CCATAATATACTCCCTCCGTTCCA 59.224 45.833 0.00 0.00 0.00 3.53
2316 3742 5.021458 TCCATAATATACTCCCTCCGTTCC 58.979 45.833 0.00 0.00 0.00 3.62
2317 3743 5.715753 AGTCCATAATATACTCCCTCCGTTC 59.284 44.000 0.00 0.00 0.00 3.95
2318 3744 5.652324 AGTCCATAATATACTCCCTCCGTT 58.348 41.667 0.00 0.00 0.00 4.44
2319 3745 5.272405 AGTCCATAATATACTCCCTCCGT 57.728 43.478 0.00 0.00 0.00 4.69
2320 3746 7.061054 TCATAGTCCATAATATACTCCCTCCG 58.939 42.308 0.00 0.00 0.00 4.63
2321 3747 8.697292 GTTCATAGTCCATAATATACTCCCTCC 58.303 40.741 0.00 0.00 0.00 4.30
2322 3748 9.482175 AGTTCATAGTCCATAATATACTCCCTC 57.518 37.037 0.00 0.00 0.00 4.30
2323 3749 9.261035 CAGTTCATAGTCCATAATATACTCCCT 57.739 37.037 0.00 0.00 0.00 4.20
2324 3750 7.982354 GCAGTTCATAGTCCATAATATACTCCC 59.018 40.741 0.00 0.00 0.00 4.30
2325 3751 8.754080 AGCAGTTCATAGTCCATAATATACTCC 58.246 37.037 0.00 0.00 0.00 3.85
2326 3752 9.796120 GAGCAGTTCATAGTCCATAATATACTC 57.204 37.037 0.00 0.00 0.00 2.59
2331 3757 8.363390 CAGAAGAGCAGTTCATAGTCCATAATA 58.637 37.037 1.40 0.00 0.00 0.98
2356 3782 3.081061 GCAACACCATGTGATAGAACCA 58.919 45.455 0.49 0.00 36.96 3.67
2389 3815 5.126396 ACTGTACTTAACGTTGGTAGGTC 57.874 43.478 11.99 3.78 0.00 3.85
2423 3849 4.346418 ACAACATGACAAAATAAAGGGCCA 59.654 37.500 6.18 0.00 0.00 5.36
2524 3952 2.113860 TCGGAAGAGGCAGAAAATGG 57.886 50.000 0.00 0.00 34.84 3.16
2541 3980 9.855361 GACACTAAATTTCAATCATCATACTCG 57.145 33.333 0.00 0.00 0.00 4.18
2659 4101 4.568072 ACATGGTGGTATGCTAGAACAA 57.432 40.909 0.00 0.00 0.00 2.83
2711 4153 6.922957 GGATAGAAAATGTGCAAAGTGTTGAA 59.077 34.615 0.00 0.00 36.83 2.69
2744 4186 3.450457 CAGACAGCTTGGGTCTAATCTCT 59.550 47.826 4.98 0.00 43.47 3.10
2811 4253 0.753479 TCTCATCAGGGGAGAGCGAC 60.753 60.000 0.00 0.00 36.52 5.19
2841 4283 2.543861 GCAGATGAAGATGCTGGCAATG 60.544 50.000 0.00 0.00 39.38 2.82
3044 4569 2.115052 TTTGCACGGTGGCCATCT 59.885 55.556 15.59 0.00 0.00 2.90
3103 4628 4.283722 AGGGATATCGTGAATCTGGGTTAC 59.716 45.833 0.00 0.00 0.00 2.50
3411 4936 0.175760 AAGTGACCGTATGCATCGCT 59.824 50.000 0.19 0.00 34.72 4.93
3446 4971 8.873144 ACTGTGGTATTACTTTGTAAGGTCTTA 58.127 33.333 0.00 0.00 0.00 2.10
3484 5009 1.601903 CAGTTTGTTGCTTAGACGGCA 59.398 47.619 0.00 0.00 37.97 5.69
3554 5079 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
3679 5204 6.317140 GCATCAGTACAATTCTGAAGATGGAA 59.683 38.462 12.52 0.00 43.65 3.53
3718 5243 1.889829 GGCATGGACGATAGCTAGACT 59.110 52.381 0.00 0.00 42.67 3.24
3937 5465 3.454587 TTGCACGGAGCTTCGGTGT 62.455 57.895 20.69 0.00 45.75 4.16
4012 5540 1.608283 GGTGTCGTTTCTCTCTTGGGG 60.608 57.143 0.00 0.00 0.00 4.96
4054 5582 2.196595 CCCTAGGATCTGGTGTTCCAA 58.803 52.381 11.48 0.00 43.81 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.