Multiple sequence alignment - TraesCS2D01G455100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G455100 chr2D 100.000 1822 0 0 653 2474 563152993 563154814 0.000000e+00 3365.0
1 TraesCS2D01G455100 chr2D 100.000 261 0 0 1 261 563152341 563152601 1.330000e-132 483.0
2 TraesCS2D01G455100 chr2A 90.957 1714 76 29 666 2346 703553500 703555167 0.000000e+00 2233.0
3 TraesCS2D01G455100 chr2A 95.349 129 6 0 2344 2472 703555404 703555532 3.230000e-49 206.0
4 TraesCS2D01G455100 chr2A 78.804 184 36 2 15 197 529935405 529935224 1.200000e-23 121.0
5 TraesCS2D01G455100 chr2B 89.179 1839 102 37 695 2474 673711205 673713005 0.000000e+00 2204.0
6 TraesCS2D01G455100 chr5A 85.052 194 26 3 4 196 575697295 575697486 6.980000e-46 195.0
7 TraesCS2D01G455100 chr5A 77.652 264 42 13 1 261 333403889 333404138 7.130000e-31 145.0
8 TraesCS2D01G455100 chr5D 82.486 177 30 1 4 180 560149322 560149147 1.180000e-33 154.0
9 TraesCS2D01G455100 chr7B 79.330 179 32 4 16 193 502692324 502692150 1.200000e-23 121.0
10 TraesCS2D01G455100 chr4A 75.543 184 34 6 15 197 596828901 596828728 2.040000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G455100 chr2D 563152341 563154814 2473 False 1924.0 3365 100.000 1 2474 2 chr2D.!!$F1 2473
1 TraesCS2D01G455100 chr2A 703553500 703555532 2032 False 1219.5 2233 93.153 666 2472 2 chr2A.!!$F1 1806
2 TraesCS2D01G455100 chr2B 673711205 673713005 1800 False 2204.0 2204 89.179 695 2474 1 chr2B.!!$F1 1779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.027455 TTGTGTTGCGAGTTTGAGCG 59.973 50.0 0.0 0.0 35.87 5.03 F
173 174 0.108615 GTGTGGGACTCGGACATCAG 60.109 60.0 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1371 0.036483 TGACGGTGATGGTGATGGTG 60.036 55.000 0.0 0.0 0.0 4.17 R
2160 2223 1.062587 CGTGTTGATTTGAGATCGCCC 59.937 52.381 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.674057 AGCGAGGAAGAGGTTGTGG 59.326 57.895 0.00 0.00 0.00 4.17
19 20 2.035442 GCGAGGAAGAGGTTGTGGC 61.035 63.158 0.00 0.00 0.00 5.01
20 21 1.674057 CGAGGAAGAGGTTGTGGCT 59.326 57.895 0.00 0.00 0.00 4.75
21 22 0.895530 CGAGGAAGAGGTTGTGGCTA 59.104 55.000 0.00 0.00 0.00 3.93
22 23 1.134965 CGAGGAAGAGGTTGTGGCTAG 60.135 57.143 0.00 0.00 0.00 3.42
23 24 1.208293 GAGGAAGAGGTTGTGGCTAGG 59.792 57.143 0.00 0.00 0.00 3.02
24 25 0.253327 GGAAGAGGTTGTGGCTAGGG 59.747 60.000 0.00 0.00 0.00 3.53
25 26 0.984995 GAAGAGGTTGTGGCTAGGGT 59.015 55.000 0.00 0.00 0.00 4.34
26 27 1.351350 GAAGAGGTTGTGGCTAGGGTT 59.649 52.381 0.00 0.00 0.00 4.11
27 28 0.693049 AGAGGTTGTGGCTAGGGTTG 59.307 55.000 0.00 0.00 0.00 3.77
28 29 0.690762 GAGGTTGTGGCTAGGGTTGA 59.309 55.000 0.00 0.00 0.00 3.18
29 30 0.693049 AGGTTGTGGCTAGGGTTGAG 59.307 55.000 0.00 0.00 0.00 3.02
30 31 0.322546 GGTTGTGGCTAGGGTTGAGG 60.323 60.000 0.00 0.00 0.00 3.86
31 32 0.690762 GTTGTGGCTAGGGTTGAGGA 59.309 55.000 0.00 0.00 0.00 3.71
32 33 0.690762 TTGTGGCTAGGGTTGAGGAC 59.309 55.000 0.00 0.00 0.00 3.85
33 34 1.218316 GTGGCTAGGGTTGAGGACG 59.782 63.158 0.00 0.00 0.00 4.79
34 35 2.187163 GGCTAGGGTTGAGGACGC 59.813 66.667 0.00 0.00 41.25 5.19
35 36 2.187163 GCTAGGGTTGAGGACGCC 59.813 66.667 0.00 0.00 41.84 5.68
36 37 2.656069 GCTAGGGTTGAGGACGCCA 61.656 63.158 0.00 0.00 41.84 5.69
37 38 1.980052 CTAGGGTTGAGGACGCCAA 59.020 57.895 0.00 0.00 41.84 4.52
38 39 0.391263 CTAGGGTTGAGGACGCCAAC 60.391 60.000 0.00 0.00 41.84 3.77
41 42 3.047877 GTTGAGGACGCCAACCGG 61.048 66.667 0.00 0.00 42.52 5.28
42 43 3.235481 TTGAGGACGCCAACCGGA 61.235 61.111 9.46 0.00 42.52 5.14
43 44 2.589157 TTGAGGACGCCAACCGGAT 61.589 57.895 9.46 0.00 42.52 4.18
44 45 2.119484 TTGAGGACGCCAACCGGATT 62.119 55.000 9.46 0.00 42.52 3.01
45 46 1.259142 TGAGGACGCCAACCGGATTA 61.259 55.000 9.46 0.00 42.52 1.75
46 47 0.108041 GAGGACGCCAACCGGATTAA 60.108 55.000 9.46 0.00 42.52 1.40
47 48 0.325602 AGGACGCCAACCGGATTAAA 59.674 50.000 9.46 0.00 42.52 1.52
48 49 1.064979 AGGACGCCAACCGGATTAAAT 60.065 47.619 9.46 0.00 42.52 1.40
49 50 2.171027 AGGACGCCAACCGGATTAAATA 59.829 45.455 9.46 0.00 42.52 1.40
50 51 2.546789 GGACGCCAACCGGATTAAATAG 59.453 50.000 9.46 0.00 42.52 1.73
51 52 1.944709 ACGCCAACCGGATTAAATAGC 59.055 47.619 9.46 0.00 42.52 2.97
52 53 1.265905 CGCCAACCGGATTAAATAGCC 59.734 52.381 9.46 0.00 0.00 3.93
53 54 1.265905 GCCAACCGGATTAAATAGCCG 59.734 52.381 9.46 0.00 44.42 5.52
61 62 4.844267 CGGATTAAATAGCCGGACTTTTG 58.156 43.478 5.05 0.00 41.29 2.44
62 63 4.261031 CGGATTAAATAGCCGGACTTTTGG 60.261 45.833 5.05 0.00 41.29 3.28
72 73 2.223537 GGACTTTTGGCCTTGTGTTG 57.776 50.000 3.32 0.00 46.73 3.33
73 74 1.570813 GACTTTTGGCCTTGTGTTGC 58.429 50.000 3.32 0.00 0.00 4.17
74 75 0.179113 ACTTTTGGCCTTGTGTTGCG 60.179 50.000 3.32 0.00 0.00 4.85
75 76 0.102120 CTTTTGGCCTTGTGTTGCGA 59.898 50.000 3.32 0.00 0.00 5.10
76 77 0.102120 TTTTGGCCTTGTGTTGCGAG 59.898 50.000 3.32 0.00 0.00 5.03
77 78 1.034838 TTTGGCCTTGTGTTGCGAGT 61.035 50.000 3.32 0.00 0.00 4.18
78 79 1.034838 TTGGCCTTGTGTTGCGAGTT 61.035 50.000 3.32 0.00 0.00 3.01
79 80 1.034838 TGGCCTTGTGTTGCGAGTTT 61.035 50.000 3.32 0.00 0.00 2.66
80 81 0.594796 GGCCTTGTGTTGCGAGTTTG 60.595 55.000 0.00 0.00 0.00 2.93
81 82 0.380378 GCCTTGTGTTGCGAGTTTGA 59.620 50.000 0.00 0.00 0.00 2.69
82 83 1.597937 GCCTTGTGTTGCGAGTTTGAG 60.598 52.381 0.00 0.00 0.00 3.02
83 84 1.597937 CCTTGTGTTGCGAGTTTGAGC 60.598 52.381 0.00 0.00 0.00 4.26
84 85 0.027455 TTGTGTTGCGAGTTTGAGCG 59.973 50.000 0.00 0.00 35.87 5.03
85 86 1.082756 GTGTTGCGAGTTTGAGCGG 60.083 57.895 0.00 0.00 35.87 5.52
86 87 2.127232 GTTGCGAGTTTGAGCGGC 60.127 61.111 0.00 0.00 35.87 6.53
87 88 3.711842 TTGCGAGTTTGAGCGGCG 61.712 61.111 0.51 0.51 35.87 6.46
91 92 4.090057 GAGTTTGAGCGGCGCCAC 62.090 66.667 30.40 22.92 0.00 5.01
104 105 4.349871 GCCACGCGACGTTCACAC 62.350 66.667 15.93 0.00 38.32 3.82
105 106 3.698463 CCACGCGACGTTCACACC 61.698 66.667 15.93 0.00 38.32 4.16
106 107 3.698463 CACGCGACGTTCACACCC 61.698 66.667 15.93 0.00 38.32 4.61
107 108 4.955774 ACGCGACGTTCACACCCC 62.956 66.667 15.93 0.00 36.35 4.95
109 110 4.612412 GCGACGTTCACACCCCCA 62.612 66.667 0.00 0.00 0.00 4.96
110 111 2.663852 CGACGTTCACACCCCCAC 60.664 66.667 0.00 0.00 0.00 4.61
111 112 2.281276 GACGTTCACACCCCCACC 60.281 66.667 0.00 0.00 0.00 4.61
112 113 4.244463 ACGTTCACACCCCCACCG 62.244 66.667 0.00 0.00 0.00 4.94
131 132 4.570663 CGGAGATGCCCGTCGGAC 62.571 72.222 14.39 0.11 44.23 4.79
132 133 3.148279 GGAGATGCCCGTCGGACT 61.148 66.667 14.39 6.40 0.00 3.85
133 134 2.105128 GAGATGCCCGTCGGACTG 59.895 66.667 14.39 0.00 0.00 3.51
134 135 4.148825 AGATGCCCGTCGGACTGC 62.149 66.667 14.39 8.56 0.00 4.40
135 136 4.148825 GATGCCCGTCGGACTGCT 62.149 66.667 14.39 0.00 0.00 4.24
136 137 3.665675 GATGCCCGTCGGACTGCTT 62.666 63.158 14.39 5.96 0.00 3.91
137 138 3.958147 ATGCCCGTCGGACTGCTTG 62.958 63.158 14.39 0.00 0.00 4.01
139 140 4.003788 CCCGTCGGACTGCTTGGT 62.004 66.667 14.39 0.00 0.00 3.67
140 141 2.030562 CCGTCGGACTGCTTGGTT 59.969 61.111 4.91 0.00 0.00 3.67
141 142 1.597027 CCGTCGGACTGCTTGGTTT 60.597 57.895 4.91 0.00 0.00 3.27
142 143 1.566018 CCGTCGGACTGCTTGGTTTC 61.566 60.000 4.91 0.00 0.00 2.78
143 144 1.566018 CGTCGGACTGCTTGGTTTCC 61.566 60.000 6.57 0.00 0.00 3.13
144 145 3.253955 CGGACTGCTTGGTTTCCG 58.746 61.111 0.00 0.00 44.65 4.30
145 146 2.325082 CGGACTGCTTGGTTTCCGG 61.325 63.158 0.00 0.00 45.95 5.14
146 147 1.971695 GGACTGCTTGGTTTCCGGG 60.972 63.158 0.00 0.00 0.00 5.73
147 148 2.597510 ACTGCTTGGTTTCCGGGC 60.598 61.111 0.00 0.00 0.00 6.13
148 149 3.737172 CTGCTTGGTTTCCGGGCG 61.737 66.667 0.00 0.00 0.00 6.13
149 150 4.257654 TGCTTGGTTTCCGGGCGA 62.258 61.111 0.00 0.00 0.00 5.54
150 151 2.750237 GCTTGGTTTCCGGGCGAT 60.750 61.111 0.00 0.00 0.00 4.58
151 152 2.340328 GCTTGGTTTCCGGGCGATT 61.340 57.895 0.00 0.00 0.00 3.34
152 153 1.800681 CTTGGTTTCCGGGCGATTC 59.199 57.895 0.00 0.00 0.00 2.52
153 154 1.654023 CTTGGTTTCCGGGCGATTCC 61.654 60.000 0.00 0.00 0.00 3.01
161 162 4.090588 GGGCGATTCCGTGTGGGA 62.091 66.667 0.00 0.00 45.40 4.37
170 171 2.970639 CGTGTGGGACTCGGACAT 59.029 61.111 0.00 0.00 32.18 3.06
171 172 1.153823 CGTGTGGGACTCGGACATC 60.154 63.158 0.00 0.00 32.18 3.06
172 173 1.873270 CGTGTGGGACTCGGACATCA 61.873 60.000 0.00 0.00 32.18 3.07
173 174 0.108615 GTGTGGGACTCGGACATCAG 60.109 60.000 0.00 0.00 0.00 2.90
174 175 0.541998 TGTGGGACTCGGACATCAGT 60.542 55.000 0.00 0.00 0.00 3.41
175 176 0.173708 GTGGGACTCGGACATCAGTC 59.826 60.000 0.00 0.00 44.21 3.51
184 185 3.017232 GACATCAGTCCGACGTGAC 57.983 57.895 0.00 0.00 38.89 3.67
185 186 0.793478 GACATCAGTCCGACGTGACG 60.793 60.000 2.24 2.24 40.26 4.35
218 219 2.676471 GCGTGGGCCTCACCATTT 60.676 61.111 15.98 0.00 43.59 2.32
219 220 2.275380 GCGTGGGCCTCACCATTTT 61.275 57.895 15.98 0.00 43.59 1.82
220 221 1.883021 CGTGGGCCTCACCATTTTC 59.117 57.895 15.98 0.00 43.59 2.29
221 222 1.883021 GTGGGCCTCACCATTTTCG 59.117 57.895 4.53 0.00 43.59 3.46
222 223 1.976474 TGGGCCTCACCATTTTCGC 60.976 57.895 4.53 0.00 42.05 4.70
223 224 2.710902 GGGCCTCACCATTTTCGCC 61.711 63.158 0.84 0.00 42.05 5.54
224 225 2.710902 GGCCTCACCATTTTCGCCC 61.711 63.158 0.00 0.00 38.86 6.13
225 226 2.710902 GCCTCACCATTTTCGCCCC 61.711 63.158 0.00 0.00 0.00 5.80
226 227 1.304052 CCTCACCATTTTCGCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
227 228 0.684153 CCTCACCATTTTCGCCCCAT 60.684 55.000 0.00 0.00 0.00 4.00
228 229 1.409521 CCTCACCATTTTCGCCCCATA 60.410 52.381 0.00 0.00 0.00 2.74
229 230 2.586425 CTCACCATTTTCGCCCCATAT 58.414 47.619 0.00 0.00 0.00 1.78
230 231 2.958355 CTCACCATTTTCGCCCCATATT 59.042 45.455 0.00 0.00 0.00 1.28
231 232 3.370104 TCACCATTTTCGCCCCATATTT 58.630 40.909 0.00 0.00 0.00 1.40
232 233 3.383185 TCACCATTTTCGCCCCATATTTC 59.617 43.478 0.00 0.00 0.00 2.17
233 234 2.360801 ACCATTTTCGCCCCATATTTCG 59.639 45.455 0.00 0.00 0.00 3.46
234 235 2.288152 CCATTTTCGCCCCATATTTCGG 60.288 50.000 0.00 0.00 0.00 4.30
235 236 2.421751 TTTTCGCCCCATATTTCGGA 57.578 45.000 0.00 0.00 0.00 4.55
236 237 2.649531 TTTCGCCCCATATTTCGGAT 57.350 45.000 0.00 0.00 0.00 4.18
237 238 3.773418 TTTCGCCCCATATTTCGGATA 57.227 42.857 0.00 0.00 0.00 2.59
238 239 3.992943 TTCGCCCCATATTTCGGATAT 57.007 42.857 0.00 0.00 0.00 1.63
239 240 5.423704 TTTCGCCCCATATTTCGGATATA 57.576 39.130 0.00 0.00 0.00 0.86
240 241 5.623956 TTCGCCCCATATTTCGGATATAT 57.376 39.130 0.00 0.00 0.00 0.86
241 242 6.734502 TTCGCCCCATATTTCGGATATATA 57.265 37.500 1.40 0.00 0.00 0.86
242 243 6.928348 TCGCCCCATATTTCGGATATATAT 57.072 37.500 0.00 0.00 0.00 0.86
243 244 6.697395 TCGCCCCATATTTCGGATATATATG 58.303 40.000 0.00 5.05 33.86 1.78
244 245 6.495526 TCGCCCCATATTTCGGATATATATGA 59.504 38.462 0.00 0.00 35.31 2.15
245 246 6.813649 CGCCCCATATTTCGGATATATATGAG 59.186 42.308 0.00 0.00 35.31 2.90
246 247 7.106239 GCCCCATATTTCGGATATATATGAGG 58.894 42.308 0.00 11.16 34.83 3.86
247 248 7.624549 CCCCATATTTCGGATATATATGAGGG 58.375 42.308 0.00 11.46 36.94 4.30
248 249 7.311297 CCCCATATTTCGGATATATATGAGGGG 60.311 44.444 18.05 18.05 38.06 4.79
249 250 7.237679 CCCATATTTCGGATATATATGAGGGGT 59.762 40.741 0.00 0.00 35.31 4.95
250 251 8.097038 CCATATTTCGGATATATATGAGGGGTG 58.903 40.741 0.00 0.00 35.31 4.61
251 252 5.353394 TTTCGGATATATATGAGGGGTGC 57.647 43.478 0.00 0.00 0.00 5.01
252 253 2.956333 TCGGATATATATGAGGGGTGCG 59.044 50.000 0.00 0.00 0.00 5.34
253 254 2.035961 CGGATATATATGAGGGGTGCGG 59.964 54.545 0.00 0.00 0.00 5.69
254 255 3.039011 GGATATATATGAGGGGTGCGGT 58.961 50.000 0.00 0.00 0.00 5.68
255 256 3.069729 GGATATATATGAGGGGTGCGGTC 59.930 52.174 0.00 0.00 0.00 4.79
256 257 2.024176 ATATATGAGGGGTGCGGTCA 57.976 50.000 0.00 0.00 0.00 4.02
257 258 1.338107 TATATGAGGGGTGCGGTCAG 58.662 55.000 0.00 0.00 0.00 3.51
707 711 3.314635 ACGGCTAGTAGAATCGATCGTTT 59.685 43.478 15.94 13.36 0.00 3.60
826 830 1.797933 CAGCCTCTCGTCGTTCGTG 60.798 63.158 0.00 1.76 40.80 4.35
847 851 3.075283 TGGGAGGCTAAAAATGGAGTTGA 59.925 43.478 0.00 0.00 0.00 3.18
1028 1032 1.431488 CCGTCATCGCCCATGTTCTG 61.431 60.000 0.00 0.00 33.66 3.02
1034 1038 3.499737 GCCCATGTTCTGCGTCCG 61.500 66.667 0.00 0.00 0.00 4.79
1148 1168 2.209064 CTGTCCCAGCTGCATGCAAC 62.209 60.000 22.88 18.01 45.94 4.17
1200 1223 2.276201 GTGTGTACTGTGTTGTGCAGA 58.724 47.619 0.00 0.00 37.40 4.26
1329 1352 4.711949 AAGGAGCAGCACCGGCAG 62.712 66.667 0.00 0.00 44.61 4.85
1346 1369 2.115052 GCACCACCATCACCACCA 59.885 61.111 0.00 0.00 0.00 4.17
1347 1370 2.268076 GCACCACCATCACCACCAC 61.268 63.158 0.00 0.00 0.00 4.16
1348 1371 1.603455 CACCACCATCACCACCACC 60.603 63.158 0.00 0.00 0.00 4.61
1488 1526 2.159503 CGTGTGACGCTCTGATTAGACT 60.160 50.000 0.00 0.00 33.65 3.24
1563 1605 4.521943 GACGGACATATACACGTACTCAC 58.478 47.826 0.00 0.00 39.95 3.51
1601 1655 0.808755 GTTTAGGGACCGGTTGCATG 59.191 55.000 9.42 0.00 0.00 4.06
1602 1656 0.963355 TTTAGGGACCGGTTGCATGC 60.963 55.000 9.42 11.82 0.00 4.06
1603 1657 2.130821 TTAGGGACCGGTTGCATGCA 62.131 55.000 18.46 18.46 0.00 3.96
1604 1658 1.920734 TAGGGACCGGTTGCATGCAT 61.921 55.000 23.37 5.68 0.00 3.96
1779 1837 0.110104 CATGGGCTCCCTCTCCATTC 59.890 60.000 6.50 0.00 39.07 2.67
1797 1855 3.543680 TTCTTCTCGCCCCAGATTAAG 57.456 47.619 0.00 0.00 0.00 1.85
1901 1959 8.741101 TTGATCAATACTACATGTTTTTGTGC 57.259 30.769 2.30 1.85 0.00 4.57
1903 1961 8.522003 TGATCAATACTACATGTTTTTGTGCAT 58.478 29.630 2.30 0.00 0.00 3.96
1904 1962 8.692110 ATCAATACTACATGTTTTTGTGCATG 57.308 30.769 2.30 0.00 45.61 4.06
1916 1974 4.446994 TTTGTGCATGTGTTTCTGAACA 57.553 36.364 0.00 0.00 43.23 3.18
1917 1975 4.652421 TTGTGCATGTGTTTCTGAACAT 57.348 36.364 0.00 0.00 46.63 2.71
1937 1995 4.202101 ACATTTGGATGAAAGTGCAACGAA 60.202 37.500 0.00 0.00 38.20 3.85
1945 2003 3.876914 TGAAAGTGCAACGAAACAGAGAT 59.123 39.130 0.00 0.00 45.86 2.75
1956 2014 3.265791 GAAACAGAGATAGTGTGGCTGG 58.734 50.000 0.00 0.00 0.00 4.85
1957 2015 0.539051 ACAGAGATAGTGTGGCTGGC 59.461 55.000 0.00 0.00 0.00 4.85
1960 2018 0.813210 GAGATAGTGTGGCTGGCTGC 60.813 60.000 7.96 7.96 41.94 5.25
1961 2019 1.078214 GATAGTGTGGCTGGCTGCA 60.078 57.895 18.32 1.75 45.15 4.41
1962 2020 0.465097 GATAGTGTGGCTGGCTGCAT 60.465 55.000 18.32 1.53 45.15 3.96
1963 2021 0.750546 ATAGTGTGGCTGGCTGCATG 60.751 55.000 18.32 0.00 45.15 4.06
1985 2048 8.243426 GCATGATATGTAGGAAAAACTGAACAA 58.757 33.333 0.00 0.00 0.00 2.83
2059 2122 3.370366 GCTTCTTGCTCACTGTATCTGTG 59.630 47.826 1.37 1.37 38.95 3.66
2100 2163 2.483877 GGATTTGACAGTGTCATCGCAA 59.516 45.455 25.97 17.28 42.40 4.85
2123 2186 0.803768 CAAGGATGGCGACGTGAGAG 60.804 60.000 0.00 0.00 0.00 3.20
2124 2187 1.251527 AAGGATGGCGACGTGAGAGT 61.252 55.000 0.00 0.00 0.00 3.24
2125 2188 1.517257 GGATGGCGACGTGAGAGTG 60.517 63.158 0.00 0.00 0.00 3.51
2126 2189 1.213013 GATGGCGACGTGAGAGTGT 59.787 57.895 0.00 0.00 0.00 3.55
2127 2190 1.073216 GATGGCGACGTGAGAGTGTG 61.073 60.000 0.00 0.00 0.00 3.82
2128 2191 1.524008 ATGGCGACGTGAGAGTGTGA 61.524 55.000 0.00 0.00 0.00 3.58
2129 2192 1.442857 GGCGACGTGAGAGTGTGAG 60.443 63.158 0.00 0.00 0.00 3.51
2130 2193 1.574925 GCGACGTGAGAGTGTGAGA 59.425 57.895 0.00 0.00 0.00 3.27
2179 2242 2.096496 CAGGGCGATCTCAAATCAACAC 59.904 50.000 0.00 0.00 0.00 3.32
2269 2335 3.419828 CACAGCGGTGCAAAGACA 58.580 55.556 15.82 0.00 38.37 3.41
2270 2336 1.009675 CACAGCGGTGCAAAGACAC 60.010 57.895 15.82 0.00 38.37 3.67
2319 2385 1.298859 AAAAGTCACCCGAGATGCGC 61.299 55.000 0.00 0.00 39.11 6.09
2325 2391 2.109799 CCCGAGATGCGCAGGATT 59.890 61.111 18.32 0.00 40.04 3.01
2362 2669 5.991328 ATTGTAACGAATGCAATCGATCT 57.009 34.783 29.65 15.47 45.48 2.75
2413 2720 2.869503 TTCCCGGCATCTTCTTCGCC 62.870 60.000 0.00 0.00 42.64 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.674057 CCACAACCTCTTCCTCGCT 59.326 57.895 0.00 0.00 0.00 4.93
1 2 2.035442 GCCACAACCTCTTCCTCGC 61.035 63.158 0.00 0.00 0.00 5.03
2 3 0.895530 TAGCCACAACCTCTTCCTCG 59.104 55.000 0.00 0.00 0.00 4.63
3 4 1.208293 CCTAGCCACAACCTCTTCCTC 59.792 57.143 0.00 0.00 0.00 3.71
4 5 1.280457 CCTAGCCACAACCTCTTCCT 58.720 55.000 0.00 0.00 0.00 3.36
5 6 0.253327 CCCTAGCCACAACCTCTTCC 59.747 60.000 0.00 0.00 0.00 3.46
6 7 0.984995 ACCCTAGCCACAACCTCTTC 59.015 55.000 0.00 0.00 0.00 2.87
7 8 1.073923 CAACCCTAGCCACAACCTCTT 59.926 52.381 0.00 0.00 0.00 2.85
8 9 0.693049 CAACCCTAGCCACAACCTCT 59.307 55.000 0.00 0.00 0.00 3.69
9 10 0.690762 TCAACCCTAGCCACAACCTC 59.309 55.000 0.00 0.00 0.00 3.85
10 11 0.693049 CTCAACCCTAGCCACAACCT 59.307 55.000 0.00 0.00 0.00 3.50
11 12 0.322546 CCTCAACCCTAGCCACAACC 60.323 60.000 0.00 0.00 0.00 3.77
12 13 0.690762 TCCTCAACCCTAGCCACAAC 59.309 55.000 0.00 0.00 0.00 3.32
13 14 0.690762 GTCCTCAACCCTAGCCACAA 59.309 55.000 0.00 0.00 0.00 3.33
14 15 1.541310 CGTCCTCAACCCTAGCCACA 61.541 60.000 0.00 0.00 0.00 4.17
15 16 1.218316 CGTCCTCAACCCTAGCCAC 59.782 63.158 0.00 0.00 0.00 5.01
16 17 2.656069 GCGTCCTCAACCCTAGCCA 61.656 63.158 0.00 0.00 0.00 4.75
17 18 2.187163 GCGTCCTCAACCCTAGCC 59.813 66.667 0.00 0.00 0.00 3.93
18 19 2.180159 TTGGCGTCCTCAACCCTAGC 62.180 60.000 0.00 0.00 0.00 3.42
19 20 0.391263 GTTGGCGTCCTCAACCCTAG 60.391 60.000 0.00 0.00 38.71 3.02
20 21 1.675219 GTTGGCGTCCTCAACCCTA 59.325 57.895 0.00 0.00 38.71 3.53
21 22 2.430367 GTTGGCGTCCTCAACCCT 59.570 61.111 0.00 0.00 38.71 4.34
24 25 2.798148 ATCCGGTTGGCGTCCTCAAC 62.798 60.000 0.00 0.00 42.53 3.18
25 26 2.119484 AATCCGGTTGGCGTCCTCAA 62.119 55.000 0.00 0.00 34.14 3.02
26 27 1.259142 TAATCCGGTTGGCGTCCTCA 61.259 55.000 0.00 0.00 34.14 3.86
27 28 0.108041 TTAATCCGGTTGGCGTCCTC 60.108 55.000 0.00 0.00 34.14 3.71
28 29 0.325602 TTTAATCCGGTTGGCGTCCT 59.674 50.000 0.00 0.00 34.14 3.85
29 30 1.385528 ATTTAATCCGGTTGGCGTCC 58.614 50.000 0.00 0.00 34.14 4.79
30 31 2.032290 GCTATTTAATCCGGTTGGCGTC 60.032 50.000 0.00 0.00 34.14 5.19
31 32 1.944709 GCTATTTAATCCGGTTGGCGT 59.055 47.619 0.00 0.00 34.14 5.68
32 33 1.265905 GGCTATTTAATCCGGTTGGCG 59.734 52.381 0.00 0.00 34.14 5.69
33 34 1.265905 CGGCTATTTAATCCGGTTGGC 59.734 52.381 0.00 0.00 39.52 4.52
39 40 4.261031 CCAAAAGTCCGGCTATTTAATCCG 60.261 45.833 0.00 0.00 42.58 4.18
40 41 4.499188 GCCAAAAGTCCGGCTATTTAATCC 60.499 45.833 0.00 0.00 45.29 3.01
41 42 4.607955 GCCAAAAGTCCGGCTATTTAATC 58.392 43.478 0.00 0.00 45.29 1.75
42 43 4.649088 GCCAAAAGTCCGGCTATTTAAT 57.351 40.909 0.00 0.00 45.29 1.40
51 52 1.106944 ACACAAGGCCAAAAGTCCGG 61.107 55.000 5.01 0.00 0.00 5.14
52 53 0.744281 AACACAAGGCCAAAAGTCCG 59.256 50.000 5.01 0.00 0.00 4.79
53 54 1.806247 GCAACACAAGGCCAAAAGTCC 60.806 52.381 5.01 0.00 0.00 3.85
54 55 1.570813 GCAACACAAGGCCAAAAGTC 58.429 50.000 5.01 0.00 0.00 3.01
55 56 0.179113 CGCAACACAAGGCCAAAAGT 60.179 50.000 5.01 0.00 0.00 2.66
56 57 0.102120 TCGCAACACAAGGCCAAAAG 59.898 50.000 5.01 0.00 0.00 2.27
57 58 0.102120 CTCGCAACACAAGGCCAAAA 59.898 50.000 5.01 0.00 0.00 2.44
58 59 1.034838 ACTCGCAACACAAGGCCAAA 61.035 50.000 5.01 0.00 0.00 3.28
59 60 1.034838 AACTCGCAACACAAGGCCAA 61.035 50.000 5.01 0.00 0.00 4.52
60 61 1.034838 AAACTCGCAACACAAGGCCA 61.035 50.000 5.01 0.00 0.00 5.36
61 62 0.594796 CAAACTCGCAACACAAGGCC 60.595 55.000 0.00 0.00 0.00 5.19
62 63 0.380378 TCAAACTCGCAACACAAGGC 59.620 50.000 0.00 0.00 0.00 4.35
63 64 1.597937 GCTCAAACTCGCAACACAAGG 60.598 52.381 0.00 0.00 0.00 3.61
64 65 1.746760 GCTCAAACTCGCAACACAAG 58.253 50.000 0.00 0.00 0.00 3.16
65 66 0.027455 CGCTCAAACTCGCAACACAA 59.973 50.000 0.00 0.00 0.00 3.33
66 67 1.641140 CGCTCAAACTCGCAACACA 59.359 52.632 0.00 0.00 0.00 3.72
67 68 1.082756 CCGCTCAAACTCGCAACAC 60.083 57.895 0.00 0.00 0.00 3.32
68 69 2.892334 GCCGCTCAAACTCGCAACA 61.892 57.895 0.00 0.00 0.00 3.33
69 70 2.127232 GCCGCTCAAACTCGCAAC 60.127 61.111 0.00 0.00 0.00 4.17
70 71 3.711842 CGCCGCTCAAACTCGCAA 61.712 61.111 0.00 0.00 0.00 4.85
74 75 4.090057 GTGGCGCCGCTCAAACTC 62.090 66.667 32.27 4.83 0.00 3.01
87 88 4.349871 GTGTGAACGTCGCGTGGC 62.350 66.667 5.77 0.00 39.99 5.01
88 89 3.698463 GGTGTGAACGTCGCGTGG 61.698 66.667 5.77 1.13 39.99 4.94
89 90 3.698463 GGGTGTGAACGTCGCGTG 61.698 66.667 5.77 2.22 39.99 5.34
90 91 4.955774 GGGGTGTGAACGTCGCGT 62.956 66.667 5.77 0.00 43.97 6.01
92 93 4.612412 TGGGGGTGTGAACGTCGC 62.612 66.667 0.00 0.00 0.00 5.19
93 94 2.663852 GTGGGGGTGTGAACGTCG 60.664 66.667 0.00 0.00 0.00 5.12
94 95 2.281276 GGTGGGGGTGTGAACGTC 60.281 66.667 0.00 0.00 0.00 4.34
95 96 4.244463 CGGTGGGGGTGTGAACGT 62.244 66.667 0.00 0.00 0.00 3.99
115 116 3.148279 AGTCCGACGGGCATCTCC 61.148 66.667 22.54 0.00 0.00 3.71
116 117 2.105128 CAGTCCGACGGGCATCTC 59.895 66.667 22.54 2.01 0.00 2.75
117 118 4.148825 GCAGTCCGACGGGCATCT 62.149 66.667 22.54 8.46 0.00 2.90
118 119 3.665675 AAGCAGTCCGACGGGCATC 62.666 63.158 22.54 11.56 0.00 3.91
119 120 3.706373 AAGCAGTCCGACGGGCAT 61.706 61.111 22.54 3.16 0.00 4.40
120 121 4.680237 CAAGCAGTCCGACGGGCA 62.680 66.667 22.54 0.00 0.00 5.36
122 123 3.530910 AACCAAGCAGTCCGACGGG 62.531 63.158 15.25 0.00 0.00 5.28
123 124 1.566018 GAAACCAAGCAGTCCGACGG 61.566 60.000 7.84 7.84 0.00 4.79
124 125 1.566018 GGAAACCAAGCAGTCCGACG 61.566 60.000 0.00 0.00 0.00 5.12
125 126 2.244946 GGAAACCAAGCAGTCCGAC 58.755 57.895 0.00 0.00 0.00 4.79
126 127 4.792087 GGAAACCAAGCAGTCCGA 57.208 55.556 0.00 0.00 0.00 4.55
127 128 3.253955 CGGAAACCAAGCAGTCCG 58.746 61.111 0.00 0.00 46.23 4.79
128 129 1.971695 CCCGGAAACCAAGCAGTCC 60.972 63.158 0.73 0.00 0.00 3.85
129 130 2.626780 GCCCGGAAACCAAGCAGTC 61.627 63.158 0.73 0.00 0.00 3.51
130 131 2.597510 GCCCGGAAACCAAGCAGT 60.598 61.111 0.73 0.00 0.00 4.40
131 132 3.737172 CGCCCGGAAACCAAGCAG 61.737 66.667 0.73 0.00 0.00 4.24
132 133 3.561120 ATCGCCCGGAAACCAAGCA 62.561 57.895 0.73 0.00 0.00 3.91
133 134 2.266376 GAATCGCCCGGAAACCAAGC 62.266 60.000 0.73 0.00 0.00 4.01
134 135 1.654023 GGAATCGCCCGGAAACCAAG 61.654 60.000 0.73 0.00 0.00 3.61
135 136 1.676303 GGAATCGCCCGGAAACCAA 60.676 57.895 0.73 0.00 0.00 3.67
136 137 2.045731 GGAATCGCCCGGAAACCA 60.046 61.111 0.73 0.00 0.00 3.67
137 138 3.199891 CGGAATCGCCCGGAAACC 61.200 66.667 0.73 0.00 45.43 3.27
144 145 4.090588 TCCCACACGGAATCGCCC 62.091 66.667 0.00 0.00 37.88 6.13
145 146 2.818274 GTCCCACACGGAATCGCC 60.818 66.667 0.00 0.00 44.47 5.54
146 147 1.810030 GAGTCCCACACGGAATCGC 60.810 63.158 0.00 0.00 45.28 4.58
147 148 4.496670 GAGTCCCACACGGAATCG 57.503 61.111 0.00 0.00 45.28 3.34
153 154 1.153823 GATGTCCGAGTCCCACACG 60.154 63.158 0.00 0.00 32.06 4.49
154 155 0.108615 CTGATGTCCGAGTCCCACAC 60.109 60.000 0.00 0.00 0.00 3.82
155 156 0.541998 ACTGATGTCCGAGTCCCACA 60.542 55.000 0.00 0.00 0.00 4.17
156 157 0.173708 GACTGATGTCCGAGTCCCAC 59.826 60.000 0.00 0.00 37.24 4.61
157 158 2.579878 GACTGATGTCCGAGTCCCA 58.420 57.895 0.00 0.00 37.24 4.37
166 167 0.793478 CGTCACGTCGGACTGATGTC 60.793 60.000 6.14 0.00 45.12 3.06
168 169 4.057615 CGTCACGTCGGACTGATG 57.942 61.111 6.57 10.14 39.64 3.07
201 202 2.212900 GAAAATGGTGAGGCCCACGC 62.213 60.000 15.48 9.76 46.62 5.34
202 203 1.883021 GAAAATGGTGAGGCCCACG 59.117 57.895 15.48 0.00 46.62 4.94
203 204 1.883021 CGAAAATGGTGAGGCCCAC 59.117 57.895 14.11 14.11 44.95 4.61
204 205 1.976474 GCGAAAATGGTGAGGCCCA 60.976 57.895 0.00 0.00 39.27 5.36
205 206 2.710902 GGCGAAAATGGTGAGGCCC 61.711 63.158 0.00 0.00 34.54 5.80
206 207 2.710902 GGGCGAAAATGGTGAGGCC 61.711 63.158 0.00 0.00 40.27 5.19
207 208 2.710902 GGGGCGAAAATGGTGAGGC 61.711 63.158 0.00 0.00 0.00 4.70
208 209 0.684153 ATGGGGCGAAAATGGTGAGG 60.684 55.000 0.00 0.00 0.00 3.86
209 210 2.051334 TATGGGGCGAAAATGGTGAG 57.949 50.000 0.00 0.00 0.00 3.51
210 211 2.746279 ATATGGGGCGAAAATGGTGA 57.254 45.000 0.00 0.00 0.00 4.02
211 212 3.716601 GAAATATGGGGCGAAAATGGTG 58.283 45.455 0.00 0.00 0.00 4.17
212 213 2.360801 CGAAATATGGGGCGAAAATGGT 59.639 45.455 0.00 0.00 0.00 3.55
213 214 2.288152 CCGAAATATGGGGCGAAAATGG 60.288 50.000 0.00 0.00 0.00 3.16
214 215 2.621055 TCCGAAATATGGGGCGAAAATG 59.379 45.455 0.00 0.00 0.00 2.32
215 216 2.938838 TCCGAAATATGGGGCGAAAAT 58.061 42.857 0.00 0.00 0.00 1.82
216 217 2.421751 TCCGAAATATGGGGCGAAAA 57.578 45.000 0.00 0.00 0.00 2.29
217 218 2.649531 ATCCGAAATATGGGGCGAAA 57.350 45.000 0.00 0.00 0.00 3.46
218 219 3.992943 ATATCCGAAATATGGGGCGAA 57.007 42.857 0.00 0.00 0.00 4.70
219 220 6.495526 TCATATATATCCGAAATATGGGGCGA 59.504 38.462 0.00 0.00 35.32 5.54
220 221 6.697395 TCATATATATCCGAAATATGGGGCG 58.303 40.000 0.00 0.00 35.32 6.13
221 222 7.106239 CCTCATATATATCCGAAATATGGGGC 58.894 42.308 7.96 0.00 43.69 5.80
222 223 7.311297 CCCCTCATATATATCCGAAATATGGGG 60.311 44.444 12.01 12.01 46.93 4.96
223 224 7.237679 ACCCCTCATATATATCCGAAATATGGG 59.762 40.741 0.00 0.00 35.32 4.00
224 225 8.097038 CACCCCTCATATATATCCGAAATATGG 58.903 40.741 0.00 0.00 35.32 2.74
225 226 7.604164 GCACCCCTCATATATATCCGAAATATG 59.396 40.741 0.00 0.00 35.72 1.78
226 227 7.525526 CGCACCCCTCATATATATCCGAAATAT 60.526 40.741 0.00 0.00 0.00 1.28
227 228 6.239204 CGCACCCCTCATATATATCCGAAATA 60.239 42.308 0.00 0.00 0.00 1.40
228 229 5.453339 CGCACCCCTCATATATATCCGAAAT 60.453 44.000 0.00 0.00 0.00 2.17
229 230 4.142026 CGCACCCCTCATATATATCCGAAA 60.142 45.833 0.00 0.00 0.00 3.46
230 231 3.383505 CGCACCCCTCATATATATCCGAA 59.616 47.826 0.00 0.00 0.00 4.30
231 232 2.956333 CGCACCCCTCATATATATCCGA 59.044 50.000 0.00 0.00 0.00 4.55
232 233 2.035961 CCGCACCCCTCATATATATCCG 59.964 54.545 0.00 0.00 0.00 4.18
233 234 3.039011 ACCGCACCCCTCATATATATCC 58.961 50.000 0.00 0.00 0.00 2.59
234 235 3.704566 TGACCGCACCCCTCATATATATC 59.295 47.826 0.00 0.00 0.00 1.63
235 236 3.706594 CTGACCGCACCCCTCATATATAT 59.293 47.826 0.00 0.00 0.00 0.86
236 237 3.096852 CTGACCGCACCCCTCATATATA 58.903 50.000 0.00 0.00 0.00 0.86
237 238 1.902508 CTGACCGCACCCCTCATATAT 59.097 52.381 0.00 0.00 0.00 0.86
238 239 1.338107 CTGACCGCACCCCTCATATA 58.662 55.000 0.00 0.00 0.00 0.86
239 240 2.044806 GCTGACCGCACCCCTCATAT 62.045 60.000 0.00 0.00 38.92 1.78
240 241 2.731571 GCTGACCGCACCCCTCATA 61.732 63.158 0.00 0.00 38.92 2.15
241 242 4.101448 GCTGACCGCACCCCTCAT 62.101 66.667 0.00 0.00 38.92 2.90
655 656 3.611792 CAGTTAGAGAGCGCGCGC 61.612 66.667 45.10 45.10 42.33 6.86
656 657 0.867753 ATTCAGTTAGAGAGCGCGCG 60.868 55.000 28.44 28.44 0.00 6.86
657 658 0.574454 CATTCAGTTAGAGAGCGCGC 59.426 55.000 26.66 26.66 0.00 6.86
658 659 1.914634 ACATTCAGTTAGAGAGCGCG 58.085 50.000 0.00 0.00 0.00 6.86
659 660 4.035278 AGTACATTCAGTTAGAGAGCGC 57.965 45.455 0.00 0.00 0.00 5.92
660 661 5.278071 CCCTAGTACATTCAGTTAGAGAGCG 60.278 48.000 0.00 0.00 0.00 5.03
661 662 5.828859 TCCCTAGTACATTCAGTTAGAGAGC 59.171 44.000 0.00 0.00 0.00 4.09
662 663 6.017770 CGTCCCTAGTACATTCAGTTAGAGAG 60.018 46.154 0.00 0.00 0.00 3.20
663 664 5.821470 CGTCCCTAGTACATTCAGTTAGAGA 59.179 44.000 0.00 0.00 0.00 3.10
664 665 5.008811 CCGTCCCTAGTACATTCAGTTAGAG 59.991 48.000 0.00 0.00 0.00 2.43
826 830 3.696548 CTCAACTCCATTTTTAGCCTCCC 59.303 47.826 0.00 0.00 0.00 4.30
847 851 4.319133 CACAAATAGGGCACGGCT 57.681 55.556 0.00 0.00 0.00 5.52
1021 1025 2.507102 CTCGCGGACGCAGAACAT 60.507 61.111 17.35 0.00 42.06 2.71
1148 1168 0.667487 ACACAGACAAGATGGTCGCG 60.667 55.000 0.00 0.00 42.62 5.87
1200 1223 2.029073 CAGAACGGCGTGTCACCT 59.971 61.111 15.70 3.20 0.00 4.00
1329 1352 2.115052 TGGTGGTGATGGTGGTGC 59.885 61.111 0.00 0.00 0.00 5.01
1338 1361 1.454104 GTGATGGTGGTGGTGGTGA 59.546 57.895 0.00 0.00 0.00 4.02
1346 1369 1.299648 CGGTGATGGTGATGGTGGT 59.700 57.895 0.00 0.00 0.00 4.16
1347 1370 0.744414 GACGGTGATGGTGATGGTGG 60.744 60.000 0.00 0.00 0.00 4.61
1348 1371 0.036483 TGACGGTGATGGTGATGGTG 60.036 55.000 0.00 0.00 0.00 4.17
1479 1517 2.362397 GAGATCGGGTGCAGTCTAATCA 59.638 50.000 0.00 0.00 0.00 2.57
1483 1521 1.101635 CGGAGATCGGGTGCAGTCTA 61.102 60.000 0.00 0.00 34.75 2.59
1563 1605 2.417339 CCCGTATGGTCATAGACGTG 57.583 55.000 0.00 0.00 32.65 4.49
1752 1810 2.276409 GGAGCCCATGCACCATGA 59.724 61.111 6.77 0.00 46.39 3.07
1756 1814 3.412624 GAGAGGGAGCCCATGCACC 62.413 68.421 8.53 0.00 46.41 5.01
1757 1815 2.191641 GAGAGGGAGCCCATGCAC 59.808 66.667 8.53 0.00 41.13 4.57
1779 1837 2.939103 CAACTTAATCTGGGGCGAGAAG 59.061 50.000 0.00 0.00 0.00 2.85
1797 1855 2.584492 AAGCAGAACAAACAGCCAAC 57.416 45.000 0.00 0.00 0.00 3.77
1909 1967 4.583907 TGCACTTTCATCCAAATGTTCAGA 59.416 37.500 0.00 0.00 34.32 3.27
1916 1974 4.582701 TTCGTTGCACTTTCATCCAAAT 57.417 36.364 0.00 0.00 0.00 2.32
1917 1975 4.109050 GTTTCGTTGCACTTTCATCCAAA 58.891 39.130 0.00 0.00 0.00 3.28
1937 1995 1.065854 GCCAGCCACACTATCTCTGTT 60.066 52.381 0.00 0.00 0.00 3.16
1945 2003 1.377594 CATGCAGCCAGCCACACTA 60.378 57.895 0.00 0.00 44.83 2.74
1956 2014 6.038603 TCAGTTTTTCCTACATATCATGCAGC 59.961 38.462 0.00 0.00 0.00 5.25
1957 2015 7.558161 TCAGTTTTTCCTACATATCATGCAG 57.442 36.000 0.00 0.00 0.00 4.41
1991 2054 4.590647 ACTCTGAACTCTGAATCTGAACCA 59.409 41.667 0.00 0.00 0.00 3.67
2100 2163 2.283529 ACGTCGCCATCCTTGAGGT 61.284 57.895 0.00 0.00 36.34 3.85
2123 2186 4.092821 TGCGCACTAAAATATGTCTCACAC 59.907 41.667 5.66 0.00 0.00 3.82
2124 2187 4.249661 TGCGCACTAAAATATGTCTCACA 58.750 39.130 5.66 0.00 0.00 3.58
2125 2188 4.857871 TGCGCACTAAAATATGTCTCAC 57.142 40.909 5.66 0.00 0.00 3.51
2126 2189 6.280643 AGTATGCGCACTAAAATATGTCTCA 58.719 36.000 14.90 0.00 0.00 3.27
2127 2190 6.771188 AGTATGCGCACTAAAATATGTCTC 57.229 37.500 14.90 0.00 0.00 3.36
2128 2191 6.511767 GCAAGTATGCGCACTAAAATATGTCT 60.512 38.462 14.90 0.00 43.83 3.41
2129 2192 5.621228 GCAAGTATGCGCACTAAAATATGTC 59.379 40.000 14.90 0.00 43.83 3.06
2130 2193 5.510671 GCAAGTATGCGCACTAAAATATGT 58.489 37.500 14.90 0.00 43.83 2.29
2160 2223 1.062587 CGTGTTGATTTGAGATCGCCC 59.937 52.381 0.00 0.00 0.00 6.13
2179 2242 7.588143 ACTTGATCACTGAACTAATCTTTCG 57.412 36.000 0.00 0.00 0.00 3.46
2217 2283 4.330620 GCCGTCCAATTTTGATTCGTAGTA 59.669 41.667 0.00 0.00 0.00 1.82
2319 2385 2.734755 TTAGTGGGCATCCAATCCTG 57.265 50.000 0.00 0.00 46.04 3.86
2325 2391 5.060506 CGTTACAATATTAGTGGGCATCCA 58.939 41.667 0.00 0.00 41.58 3.41
2392 2699 1.668419 CGAAGAAGATGCCGGGAAAT 58.332 50.000 0.00 0.00 0.00 2.17
2413 2720 2.664851 TTCTGCTTGTCGGGCGTG 60.665 61.111 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.