Multiple sequence alignment - TraesCS2D01G454900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G454900 chr2D 100.000 3013 0 0 1 3013 563007850 563010862 0.000000e+00 5565.0
1 TraesCS2D01G454900 chr2D 89.941 507 40 5 965 1466 562895623 562896123 0.000000e+00 643.0
2 TraesCS2D01G454900 chr2D 80.213 940 106 38 1 901 563095960 563096858 1.520000e-177 632.0
3 TraesCS2D01G454900 chr2D 88.247 502 48 6 964 1461 562858944 562859438 9.300000e-165 590.0
4 TraesCS2D01G454900 chr2D 81.955 665 78 26 1084 1719 562850776 562851427 2.660000e-145 525.0
5 TraesCS2D01G454900 chr2D 80.696 575 91 13 175 746 563139772 563140329 2.150000e-116 429.0
6 TraesCS2D01G454900 chr2D 83.519 449 69 5 1 447 562891515 562891960 6.010000e-112 414.0
7 TraesCS2D01G454900 chr2D 80.503 477 61 13 948 1422 562684861 562685307 1.340000e-88 337.0
8 TraesCS2D01G454900 chr2D 78.169 568 39 42 2415 2941 562852374 562852897 1.770000e-72 283.0
9 TraesCS2D01G454900 chr2D 88.806 134 10 5 1529 1658 562896241 562896373 3.110000e-35 159.0
10 TraesCS2D01G454900 chr2D 92.553 94 6 1 1469 1561 562859487 562859580 1.880000e-27 134.0
11 TraesCS2D01G454900 chr2D 76.254 299 29 23 2633 2920 563104708 563104975 1.470000e-23 121.0
12 TraesCS2D01G454900 chr2D 98.361 61 1 0 2881 2941 562886953 562887013 1.140000e-19 108.0
13 TraesCS2D01G454900 chr2D 88.333 60 7 0 2634 2693 562886636 562886695 4.170000e-09 73.1
14 TraesCS2D01G454900 chr2B 88.722 532 39 9 938 1466 673241768 673242281 5.480000e-177 630.0
15 TraesCS2D01G454900 chr2B 83.310 701 59 23 1055 1720 673595438 673596115 7.190000e-166 593.0
16 TraesCS2D01G454900 chr2B 84.964 552 65 11 918 1461 673227450 673227991 7.350000e-151 544.0
17 TraesCS2D01G454900 chr2B 83.301 509 67 11 13 505 673593896 673594402 1.270000e-123 453.0
18 TraesCS2D01G454900 chr2B 84.257 451 63 8 1 447 673238343 673238789 1.660000e-117 433.0
19 TraesCS2D01G454900 chr2B 82.713 457 70 9 1 452 673202610 673203062 6.050000e-107 398.0
20 TraesCS2D01G454900 chr2B 80.792 505 75 16 191 690 673704119 673704606 2.840000e-100 375.0
21 TraesCS2D01G454900 chr2B 79.062 597 64 33 2397 2941 673243174 673243761 1.330000e-93 353.0
22 TraesCS2D01G454900 chr2B 80.714 420 60 10 486 904 673238795 673239194 1.050000e-79 307.0
23 TraesCS2D01G454900 chr2B 84.387 269 26 8 1467 1720 673171056 673171323 1.790000e-62 250.0
24 TraesCS2D01G454900 chr2B 90.909 154 14 0 2788 2941 673190452 673190605 1.090000e-49 207.0
25 TraesCS2D01G454900 chr2B 80.786 229 28 8 2508 2725 673233538 673233761 6.680000e-37 165.0
26 TraesCS2D01G454900 chr2B 84.667 150 12 6 2624 2770 673629542 673629683 4.050000e-29 139.0
27 TraesCS2D01G454900 chr2B 92.708 96 5 2 1467 1561 673228038 673228132 1.460000e-28 137.0
28 TraesCS2D01G454900 chr2A 88.340 506 50 4 964 1466 703381868 703382367 1.550000e-167 599.0
29 TraesCS2D01G454900 chr2A 83.552 687 54 22 1066 1720 703448161 703448820 3.350000e-164 588.0
30 TraesCS2D01G454900 chr2A 86.200 529 53 11 938 1466 703402806 703403314 3.390000e-154 555.0
31 TraesCS2D01G454900 chr2A 86.372 521 52 11 964 1466 703400065 703400584 4.390000e-153 551.0
32 TraesCS2D01G454900 chr2A 78.311 959 128 41 1 913 703543764 703544688 2.040000e-151 545.0
33 TraesCS2D01G454900 chr2A 79.153 590 95 17 175 758 703440240 703440807 1.690000e-102 383.0
34 TraesCS2D01G454900 chr2A 82.118 425 43 14 952 1373 703207482 703207876 1.730000e-87 333.0
35 TraesCS2D01G454900 chr2A 78.719 484 49 25 426 878 703447489 703447949 1.060000e-69 274.0
36 TraesCS2D01G454900 chr2A 84.615 247 24 9 1477 1718 703354196 703354433 1.810000e-57 233.0
37 TraesCS2D01G454900 chr2A 84.685 222 31 2 1 221 703389371 703389590 5.060000e-53 219.0
38 TraesCS2D01G454900 chr2A 83.178 214 24 10 2734 2941 703426331 703426538 5.130000e-43 185.0
39 TraesCS2D01G454900 chr2A 78.758 306 34 16 2397 2691 703426052 703426337 3.090000e-40 176.0
40 TraesCS2D01G454900 chr2A 81.421 183 21 7 2522 2693 703383403 703383583 1.460000e-28 137.0
41 TraesCS2D01G454900 chr2A 87.603 121 6 3 2824 2941 703355715 703355829 6.780000e-27 132.0
42 TraesCS2D01G454900 chr2A 88.660 97 7 3 1467 1561 703382409 703382503 6.830000e-22 115.0
43 TraesCS2D01G454900 chr2A 82.609 138 7 8 2804 2925 703450476 703450612 4.110000e-19 106.0
44 TraesCS2D01G454900 chr2A 82.400 125 8 8 2831 2941 703383771 703383895 2.470000e-16 97.1
45 TraesCS2D01G454900 chr7D 95.890 73 3 0 2941 3013 518879072 518879144 5.280000e-23 119.0
46 TraesCS2D01G454900 chr7D 96.154 52 2 0 2962 3013 518884165 518884216 5.350000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G454900 chr2D 563007850 563010862 3012 False 5565.000000 5565 100.000000 1 3013 1 chr2D.!!$F2 3012
1 TraesCS2D01G454900 chr2D 563095960 563096858 898 False 632.000000 632 80.213000 1 901 1 chr2D.!!$F3 900
2 TraesCS2D01G454900 chr2D 563139772 563140329 557 False 429.000000 429 80.696000 175 746 1 chr2D.!!$F5 571
3 TraesCS2D01G454900 chr2D 562891515 562896373 4858 False 405.333333 643 87.422000 1 1658 3 chr2D.!!$F9 1657
4 TraesCS2D01G454900 chr2D 562850776 562852897 2121 False 404.000000 525 80.062000 1084 2941 2 chr2D.!!$F6 1857
5 TraesCS2D01G454900 chr2D 562858944 562859580 636 False 362.000000 590 90.400000 964 1561 2 chr2D.!!$F7 597
6 TraesCS2D01G454900 chr2B 673593896 673596115 2219 False 523.000000 593 83.305500 13 1720 2 chr2B.!!$F9 1707
7 TraesCS2D01G454900 chr2B 673238343 673243761 5418 False 430.750000 630 83.188750 1 2941 4 chr2B.!!$F8 2940
8 TraesCS2D01G454900 chr2B 673227450 673228132 682 False 340.500000 544 88.836000 918 1561 2 chr2B.!!$F7 643
9 TraesCS2D01G454900 chr2A 703400065 703403314 3249 False 553.000000 555 86.286000 938 1466 2 chr2A.!!$F7 528
10 TraesCS2D01G454900 chr2A 703543764 703544688 924 False 545.000000 545 78.311000 1 913 1 chr2A.!!$F4 912
11 TraesCS2D01G454900 chr2A 703440240 703440807 567 False 383.000000 383 79.153000 175 758 1 chr2A.!!$F3 583
12 TraesCS2D01G454900 chr2A 703447489 703450612 3123 False 322.666667 588 81.626667 426 2925 3 chr2A.!!$F9 2499
13 TraesCS2D01G454900 chr2A 703381868 703383895 2027 False 237.025000 599 85.205250 964 2941 4 chr2A.!!$F6 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 957 0.17907 GAGAAGATCAACGGGAGGGC 60.179 60.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 9738 0.03759 GGTGGGGCAGTGTTACATCA 59.962 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.641723 GCGTAAACCAAAGCCAAATTTACTTA 59.358 34.615 6.17 0.00 34.85 2.24
173 184 2.478879 GCAAACTAACGTGTTGTTGGCT 60.479 45.455 16.02 0.00 42.37 4.75
193 210 5.833131 TGGCTTATCCAAAATATCCCTTGTC 59.167 40.000 0.00 0.00 43.21 3.18
201 218 7.110155 TCCAAAATATCCCTTGTCTCTAACAC 58.890 38.462 0.00 0.00 37.70 3.32
222 240 7.366847 ACACAGAGTATATGCAAACTATCCT 57.633 36.000 0.00 0.00 0.00 3.24
235 253 6.763135 TGCAAACTATCCTATGTTAGAAGCAG 59.237 38.462 0.00 0.00 0.00 4.24
239 257 6.284459 ACTATCCTATGTTAGAAGCAGCAAC 58.716 40.000 0.00 0.00 0.00 4.17
240 258 4.551702 TCCTATGTTAGAAGCAGCAACA 57.448 40.909 0.00 0.00 36.66 3.33
265 289 2.515926 TGATCGCCTATCTGTTGAGC 57.484 50.000 0.00 0.00 35.45 4.26
299 327 1.765230 AGTCATCACTCGGTACTCCC 58.235 55.000 0.00 0.00 0.00 4.30
305 333 1.637553 TCACTCGGTACTCCCTACCTT 59.362 52.381 0.00 0.00 42.87 3.50
314 342 2.552367 ACTCCCTACCTTTCTTCCAGG 58.448 52.381 0.00 0.00 37.45 4.45
318 346 2.642807 CCCTACCTTTCTTCCAGGAACA 59.357 50.000 0.00 0.00 35.14 3.18
373 407 2.851263 AGAACACGCTTTATCCCACA 57.149 45.000 0.00 0.00 0.00 4.17
448 482 3.426426 GCGATACATCATCCTAGTCGACC 60.426 52.174 13.01 0.00 0.00 4.79
475 511 3.870633 ACAAGATAGGTGGAGAACGAC 57.129 47.619 0.00 0.00 0.00 4.34
535 639 7.554118 TCTTTAGAATAAACTGAGCTTCCCATG 59.446 37.037 0.00 0.00 0.00 3.66
560 664 1.491274 TTGCAGGGCTCTCATGGTCA 61.491 55.000 0.00 0.00 0.00 4.02
579 684 2.950309 TCACAAGCCGAGTAGTAGGATC 59.050 50.000 0.08 0.00 0.00 3.36
584 689 1.863267 CCGAGTAGTAGGATCGTCGT 58.137 55.000 0.00 0.00 34.71 4.34
607 730 1.915078 ATCAGGCAGCCACACCTACC 61.915 60.000 15.80 0.00 33.38 3.18
644 767 4.081862 TCCATAGACCGGTTCAGTTTAGTG 60.082 45.833 9.42 0.00 0.00 2.74
645 768 4.322499 CCATAGACCGGTTCAGTTTAGTGT 60.322 45.833 9.42 0.00 0.00 3.55
646 769 3.832615 AGACCGGTTCAGTTTAGTGTT 57.167 42.857 9.42 0.00 0.00 3.32
647 770 4.146745 AGACCGGTTCAGTTTAGTGTTT 57.853 40.909 9.42 0.00 0.00 2.83
648 771 4.520179 AGACCGGTTCAGTTTAGTGTTTT 58.480 39.130 9.42 0.00 0.00 2.43
649 772 4.945543 AGACCGGTTCAGTTTAGTGTTTTT 59.054 37.500 9.42 0.00 0.00 1.94
694 834 1.228228 GATCCATGGAGCCAGCCAA 59.772 57.895 19.66 0.00 42.16 4.52
695 835 1.076485 ATCCATGGAGCCAGCCAAC 60.076 57.895 21.33 0.00 42.16 3.77
696 836 2.578586 ATCCATGGAGCCAGCCAACC 62.579 60.000 21.33 0.00 42.16 3.77
697 837 2.036098 CATGGAGCCAGCCAACCA 59.964 61.111 0.00 0.00 42.16 3.67
722 884 1.094785 GCAAGCTCAAAGCCGGAATA 58.905 50.000 5.05 0.00 43.77 1.75
734 896 4.618920 AGCCGGAATACCTCGAATAATT 57.381 40.909 5.05 0.00 0.00 1.40
741 903 5.404667 GGAATACCTCGAATAATTGGACGTC 59.595 44.000 7.13 7.13 0.00 4.34
746 908 5.163488 ACCTCGAATAATTGGACGTCACATA 60.163 40.000 18.91 5.04 0.00 2.29
747 909 5.175126 CCTCGAATAATTGGACGTCACATAC 59.825 44.000 18.91 0.00 0.00 2.39
748 910 5.898174 TCGAATAATTGGACGTCACATACT 58.102 37.500 18.91 0.00 0.00 2.12
749 911 5.975344 TCGAATAATTGGACGTCACATACTC 59.025 40.000 18.91 4.43 0.00 2.59
750 912 5.746721 CGAATAATTGGACGTCACATACTCA 59.253 40.000 18.91 0.65 0.00 3.41
751 913 6.291637 CGAATAATTGGACGTCACATACTCAC 60.292 42.308 18.91 0.00 0.00 3.51
752 914 3.953712 ATTGGACGTCACATACTCACA 57.046 42.857 18.91 0.00 0.00 3.58
753 915 3.953712 TTGGACGTCACATACTCACAT 57.046 42.857 18.91 0.00 0.00 3.21
784 954 1.827969 ACTGGAGAAGATCAACGGGAG 59.172 52.381 0.00 0.00 0.00 4.30
787 957 0.179070 GAGAAGATCAACGGGAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
805 976 1.745489 CGGGGAAAAGAAGCGGAGG 60.745 63.158 0.00 0.00 0.00 4.30
812 983 3.119814 GGAAAAGAAGCGGAGGAATGAAC 60.120 47.826 0.00 0.00 0.00 3.18
840 1011 3.041940 CGGTTGGTCGACACTGCC 61.042 66.667 18.91 12.11 0.00 4.85
850 1028 1.004277 CGACACTGCCGACTCTTGAC 61.004 60.000 0.00 0.00 0.00 3.18
862 1040 1.077645 CTCTTGACTCTGCTCGCTGC 61.078 60.000 0.00 0.00 43.25 5.25
873 1055 2.721129 GCTCGCTGCAATAGTGTAAC 57.279 50.000 0.00 0.00 42.31 2.50
874 1056 1.999735 GCTCGCTGCAATAGTGTAACA 59.000 47.619 0.00 0.00 40.05 2.41
875 1057 2.029728 GCTCGCTGCAATAGTGTAACAG 59.970 50.000 0.00 0.00 40.05 3.16
876 1058 3.254060 CTCGCTGCAATAGTGTAACAGT 58.746 45.455 0.00 0.00 41.43 3.55
877 1059 4.421058 CTCGCTGCAATAGTGTAACAGTA 58.579 43.478 0.00 0.00 41.43 2.74
878 1060 5.006153 TCGCTGCAATAGTGTAACAGTAT 57.994 39.130 0.00 0.00 41.43 2.12
915 1109 4.802051 CCACCCCCACGGCTCATG 62.802 72.222 0.00 0.00 33.26 3.07
916 1110 3.716195 CACCCCCACGGCTCATGA 61.716 66.667 0.00 0.00 33.26 3.07
921 1115 0.887836 CCCCACGGCTCATGATCATG 60.888 60.000 26.79 26.79 40.09 3.07
939 4290 5.410355 TCATGAGTCATGAACTGTCATCA 57.590 39.130 29.39 6.54 46.17 3.07
953 4304 3.127589 TGTCATCATGTGTTTCGTCGTT 58.872 40.909 0.00 0.00 0.00 3.85
958 4309 1.784856 CATGTGTTTCGTCGTTCGTCT 59.215 47.619 0.00 0.00 40.80 4.18
1026 5978 3.775654 CGCGCCCCTCTTCCTCTT 61.776 66.667 0.00 0.00 0.00 2.85
1027 5979 2.188207 GCGCCCCTCTTCCTCTTC 59.812 66.667 0.00 0.00 0.00 2.87
1032 5984 1.494960 CCCCTCTTCCTCTTCCTCTG 58.505 60.000 0.00 0.00 0.00 3.35
1036 5988 1.756538 CTCTTCCTCTTCCTCTGCCTC 59.243 57.143 0.00 0.00 0.00 4.70
1037 5989 0.829990 CTTCCTCTTCCTCTGCCTCC 59.170 60.000 0.00 0.00 0.00 4.30
1038 5990 0.618968 TTCCTCTTCCTCTGCCTCCC 60.619 60.000 0.00 0.00 0.00 4.30
1041 6001 0.032217 CTCTTCCTCTGCCTCCCTCT 60.032 60.000 0.00 0.00 0.00 3.69
1048 6008 3.615811 TGCCTCCCTCTCCCCACT 61.616 66.667 0.00 0.00 0.00 4.00
1049 6009 3.086600 GCCTCCCTCTCCCCACTG 61.087 72.222 0.00 0.00 0.00 3.66
1050 6010 2.452114 CCTCCCTCTCCCCACTGT 59.548 66.667 0.00 0.00 0.00 3.55
1058 6021 0.843309 TCTCCCCACTGTGAAAGCAA 59.157 50.000 9.86 0.00 0.00 3.91
1062 6025 1.202405 CCCCACTGTGAAAGCAACAAC 60.202 52.381 9.86 0.00 0.00 3.32
1082 6045 1.002134 AAGCGCACCACCAAGCTAT 60.002 52.632 11.47 0.00 39.25 2.97
1141 6118 1.463674 CACAATGGGGGCTTCAGTAC 58.536 55.000 0.00 0.00 0.00 2.73
1395 6375 1.599047 CTGGCATCAAGACTCCGGT 59.401 57.895 0.00 0.00 0.00 5.28
1428 6414 2.437359 AGCTAGCCGGCAAAGCTG 60.437 61.111 39.68 20.88 44.67 4.24
1461 6449 2.863137 GAGTAGAGCTTGGCTTGAATCG 59.137 50.000 0.00 0.00 39.88 3.34
1500 6531 3.780173 GCCTGAGCCGGAGAAGCT 61.780 66.667 5.05 0.00 45.23 3.74
1517 6558 6.014327 GGAGAAGCTATGAAGGATCTGAGAAT 60.014 42.308 0.00 0.00 0.00 2.40
1562 6611 3.948719 GGGTCGCCCACTGGACAA 61.949 66.667 9.72 0.00 44.65 3.18
1568 6620 0.535102 CGCCCACTGGACAACTTCTT 60.535 55.000 0.00 0.00 0.00 2.52
1590 6642 1.003233 GCTCCGACTGGCTCCTTTT 60.003 57.895 0.00 0.00 34.14 2.27
1607 6693 1.295792 TTTCGCCTCTGTGTGTGTTC 58.704 50.000 0.00 0.00 0.00 3.18
1661 6753 4.454504 ACACCATCTGTAAATCGAAACCAC 59.545 41.667 0.00 0.00 0.00 4.16
1663 6755 4.695455 ACCATCTGTAAATCGAAACCACTG 59.305 41.667 0.00 0.00 0.00 3.66
1695 6787 8.004215 TCCCTATTTCAACACATATATTTGCCT 58.996 33.333 0.00 0.00 0.00 4.75
1696 6788 8.641541 CCCTATTTCAACACATATATTTGCCTT 58.358 33.333 0.00 0.00 0.00 4.35
1720 6818 6.104665 TGATCATGACTTGTCTGAGCTTTAG 58.895 40.000 0.00 0.00 0.00 1.85
1731 6865 6.647229 TGTCTGAGCTTTAGATTGATCATGT 58.353 36.000 0.00 0.00 0.00 3.21
1733 6867 6.538021 GTCTGAGCTTTAGATTGATCATGTGT 59.462 38.462 0.00 0.00 0.00 3.72
1739 6873 8.887717 AGCTTTAGATTGATCATGTGTCTTAAC 58.112 33.333 0.00 0.00 0.00 2.01
1740 6874 8.125448 GCTTTAGATTGATCATGTGTCTTAACC 58.875 37.037 0.00 0.00 0.00 2.85
1742 6876 4.572389 AGATTGATCATGTGTCTTAACCGC 59.428 41.667 0.00 0.00 0.00 5.68
1743 6877 3.610040 TGATCATGTGTCTTAACCGCT 57.390 42.857 0.00 0.00 0.00 5.52
1744 6878 3.937814 TGATCATGTGTCTTAACCGCTT 58.062 40.909 0.00 0.00 0.00 4.68
1745 6879 5.079689 TGATCATGTGTCTTAACCGCTTA 57.920 39.130 0.00 0.00 0.00 3.09
1746 6880 5.483811 TGATCATGTGTCTTAACCGCTTAA 58.516 37.500 0.00 0.00 0.00 1.85
1747 6881 5.350365 TGATCATGTGTCTTAACCGCTTAAC 59.650 40.000 0.00 0.00 0.00 2.01
1748 6882 3.676172 TCATGTGTCTTAACCGCTTAACG 59.324 43.478 0.00 0.00 43.15 3.18
1749 6883 3.096489 TGTGTCTTAACCGCTTAACGT 57.904 42.857 0.00 0.00 41.42 3.99
1750 6884 4.235939 TGTGTCTTAACCGCTTAACGTA 57.764 40.909 0.00 0.00 41.42 3.57
1752 6886 5.046529 TGTGTCTTAACCGCTTAACGTAAA 58.953 37.500 0.00 0.00 41.42 2.01
1754 6888 6.202570 TGTGTCTTAACCGCTTAACGTAAATT 59.797 34.615 0.00 0.00 41.42 1.82
1756 6890 6.423302 TGTCTTAACCGCTTAACGTAAATTGA 59.577 34.615 0.00 0.00 41.42 2.57
1757 6891 6.952083 GTCTTAACCGCTTAACGTAAATTGAG 59.048 38.462 0.00 0.00 41.42 3.02
1758 6892 3.734776 ACCGCTTAACGTAAATTGAGC 57.265 42.857 0.00 0.00 41.42 4.26
1759 6893 3.068560 ACCGCTTAACGTAAATTGAGCA 58.931 40.909 3.13 0.00 40.31 4.26
1760 6894 3.120442 ACCGCTTAACGTAAATTGAGCAC 60.120 43.478 3.13 0.00 40.31 4.40
1763 6897 4.323751 GCTTAACGTAAATTGAGCACTCG 58.676 43.478 0.00 0.00 40.11 4.18
1810 6944 4.461431 TGAAATCTCGCCAGACAAGTACTA 59.539 41.667 0.00 0.00 0.00 1.82
1813 6947 3.008330 TCTCGCCAGACAAGTACTACTC 58.992 50.000 0.00 0.00 0.00 2.59
1814 6948 2.089980 TCGCCAGACAAGTACTACTCC 58.910 52.381 0.00 0.00 0.00 3.85
1815 6949 2.093106 CGCCAGACAAGTACTACTCCT 58.907 52.381 0.00 0.00 0.00 3.69
1816 6950 3.054875 TCGCCAGACAAGTACTACTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
1819 6953 4.500035 GCCAGACAAGTACTACTCCTATGC 60.500 50.000 0.00 0.00 0.00 3.14
1821 6955 5.127194 CCAGACAAGTACTACTCCTATGCAA 59.873 44.000 0.00 0.00 0.00 4.08
1823 6957 5.952947 AGACAAGTACTACTCCTATGCAAGT 59.047 40.000 0.00 0.00 0.00 3.16
1826 6960 6.210784 ACAAGTACTACTCCTATGCAAGTGAA 59.789 38.462 0.00 0.00 0.00 3.18
1828 6962 6.810911 AGTACTACTCCTATGCAAGTGAATG 58.189 40.000 0.00 0.00 0.00 2.67
1829 6963 5.028549 ACTACTCCTATGCAAGTGAATGG 57.971 43.478 0.00 0.00 0.00 3.16
1830 6964 2.648059 ACTCCTATGCAAGTGAATGGC 58.352 47.619 0.00 0.00 0.00 4.40
1853 7965 3.393089 AGACACTGCTTGAACGAGATT 57.607 42.857 0.00 0.00 0.00 2.40
1854 7966 3.062763 AGACACTGCTTGAACGAGATTG 58.937 45.455 0.00 0.00 0.00 2.67
1863 7975 1.792367 TGAACGAGATTGTGTCGCTTG 59.208 47.619 0.00 0.00 41.26 4.01
1869 7981 3.370978 CGAGATTGTGTCGCTTGGTTATT 59.629 43.478 0.00 0.00 0.00 1.40
1873 7985 6.785191 AGATTGTGTCGCTTGGTTATTAATG 58.215 36.000 0.00 0.00 0.00 1.90
1890 8002 1.033574 ATGAAACGGCCGTGGAAAAA 58.966 45.000 34.95 15.02 0.00 1.94
1893 8005 1.001158 GAAACGGCCGTGGAAAAATCA 60.001 47.619 34.95 0.00 0.00 2.57
1929 8042 2.050350 CAGGGGATGGCTTGCACAG 61.050 63.158 0.00 0.00 0.00 3.66
1943 8057 4.674623 GCTTGCACAGGATTTGAGAAGATG 60.675 45.833 0.00 0.00 0.00 2.90
1949 8063 3.760151 CAGGATTTGAGAAGATGCCAACA 59.240 43.478 0.00 0.00 0.00 3.33
1954 8069 5.885230 TTTGAGAAGATGCCAACATAGTG 57.115 39.130 0.00 0.00 36.35 2.74
1989 9065 3.181470 GCTACAGCAAAAACTGGGGAAAA 60.181 43.478 0.00 0.00 42.21 2.29
1993 9069 4.019771 ACAGCAAAAACTGGGGAAAAAGAA 60.020 37.500 0.00 0.00 42.21 2.52
2019 9095 8.911247 ATGAAAAAGGATTCGTTAAGCATTAC 57.089 30.769 0.00 0.00 31.80 1.89
2020 9096 8.106247 TGAAAAAGGATTCGTTAAGCATTACT 57.894 30.769 0.00 0.00 31.80 2.24
2027 9112 6.526674 GGATTCGTTAAGCATTACTTTTGTGG 59.473 38.462 0.00 0.00 39.97 4.17
2036 9121 4.269844 GCATTACTTTTGTGGTGTTGTTGG 59.730 41.667 0.00 0.00 0.00 3.77
2038 9123 3.586100 ACTTTTGTGGTGTTGTTGGTC 57.414 42.857 0.00 0.00 0.00 4.02
2048 9133 4.273969 TGGTGTTGTTGGTCTAACGATTTC 59.726 41.667 0.00 0.00 42.34 2.17
2060 9145 2.094762 ACGATTTCCCTTCGTCTTGG 57.905 50.000 0.00 0.00 46.13 3.61
2061 9146 1.338769 ACGATTTCCCTTCGTCTTGGG 60.339 52.381 0.00 0.00 46.13 4.12
2063 9148 2.093869 CGATTTCCCTTCGTCTTGGGTA 60.094 50.000 0.00 0.00 43.74 3.69
2089 9472 7.570607 AGTCAAGATGATAGGGATTTAACTCCT 59.429 37.037 11.30 4.13 35.50 3.69
2106 9489 3.346631 CTTGTTCGCCTGGCCATGC 62.347 63.158 21.93 21.93 0.00 4.06
2107 9490 4.657408 TGTTCGCCTGGCCATGCA 62.657 61.111 29.18 15.56 0.00 3.96
2117 9529 0.964700 TGGCCATGCACGAATTTTCA 59.035 45.000 0.00 0.00 0.00 2.69
2128 9540 5.350365 TGCACGAATTTTCATCTACCAGTAC 59.650 40.000 0.00 0.00 0.00 2.73
2159 9571 7.595819 TTTTGACAACCTTCTCATTGGTAAT 57.404 32.000 0.00 0.00 35.17 1.89
2164 9576 5.481473 ACAACCTTCTCATTGGTAATTGCAT 59.519 36.000 0.00 0.00 35.17 3.96
2165 9577 6.663093 ACAACCTTCTCATTGGTAATTGCATA 59.337 34.615 0.00 0.00 35.17 3.14
2166 9578 7.342799 ACAACCTTCTCATTGGTAATTGCATAT 59.657 33.333 0.00 0.00 35.17 1.78
2167 9579 8.849168 CAACCTTCTCATTGGTAATTGCATATA 58.151 33.333 0.00 0.00 35.17 0.86
2168 9580 9.592196 AACCTTCTCATTGGTAATTGCATATAT 57.408 29.630 0.00 0.00 35.17 0.86
2169 9581 9.592196 ACCTTCTCATTGGTAATTGCATATATT 57.408 29.630 0.00 0.00 34.36 1.28
2172 9584 9.695526 TTCTCATTGGTAATTGCATATATTTGC 57.304 29.630 10.83 10.83 43.07 3.68
2187 9599 8.330302 GCATATATTTGCAACTGAACATTTTCC 58.670 33.333 12.62 0.00 42.31 3.13
2188 9600 6.949578 ATATTTGCAACTGAACATTTTCCG 57.050 33.333 0.00 0.00 0.00 4.30
2189 9601 4.377839 TTTGCAACTGAACATTTTCCGA 57.622 36.364 0.00 0.00 0.00 4.55
2190 9602 4.377839 TTGCAACTGAACATTTTCCGAA 57.622 36.364 0.00 0.00 0.00 4.30
2191 9603 3.963665 TGCAACTGAACATTTTCCGAAG 58.036 40.909 0.00 0.00 0.00 3.79
2203 9615 3.484547 CCGAAGGCGTTACGGTGC 61.485 66.667 6.94 0.00 46.14 5.01
2204 9616 2.431942 CGAAGGCGTTACGGTGCT 60.432 61.111 6.94 0.00 0.00 4.40
2205 9617 2.726691 CGAAGGCGTTACGGTGCTG 61.727 63.158 6.94 0.00 0.00 4.41
2206 9618 1.373748 GAAGGCGTTACGGTGCTGA 60.374 57.895 6.94 0.00 0.00 4.26
2207 9619 0.739813 GAAGGCGTTACGGTGCTGAT 60.740 55.000 6.94 0.00 0.00 2.90
2208 9620 0.321298 AAGGCGTTACGGTGCTGATT 60.321 50.000 6.94 0.00 0.00 2.57
2209 9621 0.533491 AGGCGTTACGGTGCTGATTA 59.467 50.000 6.94 0.00 0.00 1.75
2210 9622 0.648958 GGCGTTACGGTGCTGATTAC 59.351 55.000 6.94 0.00 0.00 1.89
2211 9623 0.296642 GCGTTACGGTGCTGATTACG 59.703 55.000 6.94 0.00 0.00 3.18
2212 9624 1.898938 CGTTACGGTGCTGATTACGA 58.101 50.000 0.00 0.00 0.00 3.43
2213 9625 1.580704 CGTTACGGTGCTGATTACGAC 59.419 52.381 0.00 0.00 0.00 4.34
2214 9626 1.580704 GTTACGGTGCTGATTACGACG 59.419 52.381 0.00 0.00 0.00 5.12
2215 9627 0.099259 TACGGTGCTGATTACGACGG 59.901 55.000 0.00 0.00 0.00 4.79
2216 9628 1.138036 CGGTGCTGATTACGACGGA 59.862 57.895 0.00 0.00 0.00 4.69
2217 9629 0.457166 CGGTGCTGATTACGACGGAA 60.457 55.000 0.00 0.00 0.00 4.30
2218 9630 1.278238 GGTGCTGATTACGACGGAAG 58.722 55.000 0.00 0.00 0.00 3.46
2219 9631 1.135199 GGTGCTGATTACGACGGAAGA 60.135 52.381 0.00 0.00 0.00 2.87
2220 9632 2.602878 GTGCTGATTACGACGGAAGAA 58.397 47.619 0.00 0.00 0.00 2.52
2221 9633 3.187700 GTGCTGATTACGACGGAAGAAT 58.812 45.455 0.00 0.00 0.00 2.40
2222 9634 4.357142 GTGCTGATTACGACGGAAGAATA 58.643 43.478 0.00 0.00 0.00 1.75
2223 9635 4.441415 GTGCTGATTACGACGGAAGAATAG 59.559 45.833 0.00 0.00 0.00 1.73
2224 9636 4.337274 TGCTGATTACGACGGAAGAATAGA 59.663 41.667 0.00 0.00 0.00 1.98
2225 9637 4.912766 GCTGATTACGACGGAAGAATAGAG 59.087 45.833 0.00 0.00 0.00 2.43
2226 9638 4.856664 TGATTACGACGGAAGAATAGAGC 58.143 43.478 0.00 0.00 0.00 4.09
2227 9639 4.579340 TGATTACGACGGAAGAATAGAGCT 59.421 41.667 0.00 0.00 0.00 4.09
2228 9640 5.761726 TGATTACGACGGAAGAATAGAGCTA 59.238 40.000 0.00 0.00 0.00 3.32
2229 9641 3.967203 ACGACGGAAGAATAGAGCTAC 57.033 47.619 0.00 0.00 0.00 3.58
2230 9642 3.276857 ACGACGGAAGAATAGAGCTACA 58.723 45.455 0.00 0.00 0.00 2.74
2231 9643 3.065095 ACGACGGAAGAATAGAGCTACAC 59.935 47.826 0.00 0.00 0.00 2.90
2232 9644 3.064958 CGACGGAAGAATAGAGCTACACA 59.935 47.826 0.00 0.00 0.00 3.72
2233 9645 4.438336 CGACGGAAGAATAGAGCTACACAA 60.438 45.833 0.00 0.00 0.00 3.33
2234 9646 5.593010 GACGGAAGAATAGAGCTACACAAT 58.407 41.667 0.00 0.00 0.00 2.71
2235 9647 6.512903 CGACGGAAGAATAGAGCTACACAATA 60.513 42.308 0.00 0.00 0.00 1.90
2236 9648 7.291411 ACGGAAGAATAGAGCTACACAATAT 57.709 36.000 0.00 0.00 0.00 1.28
2237 9649 7.148641 ACGGAAGAATAGAGCTACACAATATG 58.851 38.462 0.00 0.00 0.00 1.78
2238 9650 7.148641 CGGAAGAATAGAGCTACACAATATGT 58.851 38.462 0.00 0.00 46.06 2.29
2239 9651 8.297426 CGGAAGAATAGAGCTACACAATATGTA 58.703 37.037 0.00 0.00 43.19 2.29
2240 9652 9.982651 GGAAGAATAGAGCTACACAATATGTAA 57.017 33.333 0.00 0.00 43.35 2.41
2246 9658 7.045126 AGAGCTACACAATATGTAAGTCTCC 57.955 40.000 0.00 0.00 43.35 3.71
2247 9659 6.607600 AGAGCTACACAATATGTAAGTCTCCA 59.392 38.462 0.00 0.00 43.35 3.86
2248 9660 7.124298 AGAGCTACACAATATGTAAGTCTCCAA 59.876 37.037 0.00 0.00 43.35 3.53
2249 9661 7.042335 AGCTACACAATATGTAAGTCTCCAAC 58.958 38.462 0.00 0.00 43.35 3.77
2250 9662 7.042335 GCTACACAATATGTAAGTCTCCAACT 58.958 38.462 0.00 0.00 43.35 3.16
2264 9676 7.856145 AGTCTCCAACTTAGCATTAATTCTG 57.144 36.000 0.00 0.00 33.03 3.02
2265 9677 6.825721 AGTCTCCAACTTAGCATTAATTCTGG 59.174 38.462 0.00 0.00 33.03 3.86
2266 9678 6.823689 GTCTCCAACTTAGCATTAATTCTGGA 59.176 38.462 0.00 0.00 0.00 3.86
2267 9679 7.011857 GTCTCCAACTTAGCATTAATTCTGGAG 59.988 40.741 11.61 11.61 45.77 3.86
2268 9680 6.721318 TCCAACTTAGCATTAATTCTGGAGT 58.279 36.000 0.00 0.00 0.00 3.85
2269 9681 6.599244 TCCAACTTAGCATTAATTCTGGAGTG 59.401 38.462 0.00 0.00 0.00 3.51
2270 9682 6.375455 CCAACTTAGCATTAATTCTGGAGTGT 59.625 38.462 0.00 0.00 0.00 3.55
2271 9683 7.552687 CCAACTTAGCATTAATTCTGGAGTGTA 59.447 37.037 0.00 0.00 0.00 2.90
2272 9684 8.391106 CAACTTAGCATTAATTCTGGAGTGTAC 58.609 37.037 0.00 0.00 0.00 2.90
2273 9685 7.852263 ACTTAGCATTAATTCTGGAGTGTACT 58.148 34.615 0.00 0.00 0.00 2.73
2274 9686 8.978472 ACTTAGCATTAATTCTGGAGTGTACTA 58.022 33.333 0.00 0.00 0.00 1.82
2275 9687 9.469807 CTTAGCATTAATTCTGGAGTGTACTAG 57.530 37.037 0.00 0.00 0.00 2.57
2276 9688 6.284459 AGCATTAATTCTGGAGTGTACTAGC 58.716 40.000 0.00 0.00 0.00 3.42
2277 9689 6.049149 GCATTAATTCTGGAGTGTACTAGCA 58.951 40.000 0.00 0.00 0.00 3.49
2278 9690 6.538742 GCATTAATTCTGGAGTGTACTAGCAA 59.461 38.462 0.00 0.00 0.00 3.91
2279 9691 7.065803 GCATTAATTCTGGAGTGTACTAGCAAA 59.934 37.037 0.00 0.00 0.00 3.68
2280 9692 8.607459 CATTAATTCTGGAGTGTACTAGCAAAG 58.393 37.037 0.00 0.00 0.00 2.77
2281 9693 4.537135 TTCTGGAGTGTACTAGCAAAGG 57.463 45.455 0.00 0.00 0.00 3.11
2282 9694 2.832129 TCTGGAGTGTACTAGCAAAGGG 59.168 50.000 0.00 0.00 0.00 3.95
2283 9695 2.567615 CTGGAGTGTACTAGCAAAGGGT 59.432 50.000 0.00 0.00 0.00 4.34
2284 9696 2.565834 TGGAGTGTACTAGCAAAGGGTC 59.434 50.000 0.00 0.00 0.00 4.46
2285 9697 2.416972 GGAGTGTACTAGCAAAGGGTCG 60.417 54.545 0.00 0.00 0.00 4.79
2286 9698 2.490903 GAGTGTACTAGCAAAGGGTCGA 59.509 50.000 0.00 0.00 0.00 4.20
2287 9699 2.492484 AGTGTACTAGCAAAGGGTCGAG 59.508 50.000 0.00 0.00 0.00 4.04
2288 9700 2.490903 GTGTACTAGCAAAGGGTCGAGA 59.509 50.000 0.00 0.00 0.00 4.04
2289 9701 3.057033 GTGTACTAGCAAAGGGTCGAGAA 60.057 47.826 0.00 0.00 0.00 2.87
2290 9702 3.575256 TGTACTAGCAAAGGGTCGAGAAA 59.425 43.478 0.00 0.00 0.00 2.52
2291 9703 3.764237 ACTAGCAAAGGGTCGAGAAAA 57.236 42.857 0.00 0.00 0.00 2.29
2292 9704 4.081322 ACTAGCAAAGGGTCGAGAAAAA 57.919 40.909 0.00 0.00 0.00 1.94
2327 9739 9.981114 AAAAACCCTTGAGTAATTTATGAACTG 57.019 29.630 0.00 0.00 0.00 3.16
2328 9740 8.934023 AAACCCTTGAGTAATTTATGAACTGA 57.066 30.769 0.00 0.00 0.00 3.41
2329 9741 9.533831 AAACCCTTGAGTAATTTATGAACTGAT 57.466 29.630 0.00 0.00 0.00 2.90
2330 9742 8.511604 ACCCTTGAGTAATTTATGAACTGATG 57.488 34.615 0.00 0.00 0.00 3.07
2331 9743 8.109634 ACCCTTGAGTAATTTATGAACTGATGT 58.890 33.333 0.00 0.00 0.00 3.06
2332 9744 9.613428 CCCTTGAGTAATTTATGAACTGATGTA 57.387 33.333 0.00 0.00 0.00 2.29
2339 9751 9.490663 GTAATTTATGAACTGATGTAACACTGC 57.509 33.333 0.00 0.00 0.00 4.40
2340 9752 6.494893 TTTATGAACTGATGTAACACTGCC 57.505 37.500 0.00 0.00 0.00 4.85
2341 9753 2.778299 TGAACTGATGTAACACTGCCC 58.222 47.619 0.00 0.00 0.00 5.36
2342 9754 2.084546 GAACTGATGTAACACTGCCCC 58.915 52.381 0.00 0.00 0.00 5.80
2343 9755 1.064003 ACTGATGTAACACTGCCCCA 58.936 50.000 0.00 0.00 0.00 4.96
2344 9756 1.271379 ACTGATGTAACACTGCCCCAC 60.271 52.381 0.00 0.00 0.00 4.61
2345 9757 0.037590 TGATGTAACACTGCCCCACC 59.962 55.000 0.00 0.00 0.00 4.61
2346 9758 0.679960 GATGTAACACTGCCCCACCC 60.680 60.000 0.00 0.00 0.00 4.61
2347 9759 2.035155 GTAACACTGCCCCACCCC 59.965 66.667 0.00 0.00 0.00 4.95
2348 9760 3.642503 TAACACTGCCCCACCCCG 61.643 66.667 0.00 0.00 0.00 5.73
2387 9799 2.879026 GGAAACCCGCTCATTATTCTCC 59.121 50.000 0.00 0.00 0.00 3.71
2388 9800 3.541632 GAAACCCGCTCATTATTCTCCA 58.458 45.455 0.00 0.00 0.00 3.86
2389 9801 3.864789 AACCCGCTCATTATTCTCCAT 57.135 42.857 0.00 0.00 0.00 3.41
2390 9802 3.864789 ACCCGCTCATTATTCTCCATT 57.135 42.857 0.00 0.00 0.00 3.16
2391 9803 4.170468 ACCCGCTCATTATTCTCCATTT 57.830 40.909 0.00 0.00 0.00 2.32
2392 9804 4.536765 ACCCGCTCATTATTCTCCATTTT 58.463 39.130 0.00 0.00 0.00 1.82
2393 9805 4.339247 ACCCGCTCATTATTCTCCATTTTG 59.661 41.667 0.00 0.00 0.00 2.44
2394 9806 4.580167 CCCGCTCATTATTCTCCATTTTGA 59.420 41.667 0.00 0.00 0.00 2.69
2395 9807 5.278169 CCCGCTCATTATTCTCCATTTTGAG 60.278 44.000 0.00 0.00 33.86 3.02
2409 9821 4.980434 CCATTTTGAGTGAAGCAGAAACAG 59.020 41.667 0.00 0.00 0.00 3.16
2412 9824 2.487934 TGAGTGAAGCAGAAACAGAGC 58.512 47.619 0.00 0.00 0.00 4.09
2413 9825 1.803555 GAGTGAAGCAGAAACAGAGCC 59.196 52.381 0.00 0.00 0.00 4.70
2442 9861 9.396022 TCTTTTCACCAGAAATCATATTCCTAC 57.604 33.333 0.00 0.00 42.90 3.18
2469 9888 6.944557 AAAAGTTGCACAAAAACTCTACAC 57.055 33.333 0.00 0.00 36.87 2.90
2470 9889 5.637006 AAGTTGCACAAAAACTCTACACA 57.363 34.783 0.00 0.00 36.87 3.72
2509 9959 2.226330 TGCAACCACACATACAGTTCC 58.774 47.619 0.00 0.00 0.00 3.62
2510 9960 1.196808 GCAACCACACATACAGTTCCG 59.803 52.381 0.00 0.00 0.00 4.30
2511 9961 2.761559 CAACCACACATACAGTTCCGA 58.238 47.619 0.00 0.00 0.00 4.55
2512 9962 3.334691 CAACCACACATACAGTTCCGAT 58.665 45.455 0.00 0.00 0.00 4.18
2516 10418 4.000325 CCACACATACAGTTCCGATTGAA 59.000 43.478 0.00 0.00 0.00 2.69
2520 10422 7.012327 CCACACATACAGTTCCGATTGAAATAT 59.988 37.037 0.00 0.00 33.94 1.28
2535 10437 9.073368 CGATTGAAATATTAGTATGTAGGGTCG 57.927 37.037 0.00 0.00 0.00 4.79
2639 10570 2.513666 ATGTACCCGGCATGTGCG 60.514 61.111 0.00 0.00 43.26 5.34
2651 10582 1.980232 ATGTGCGAGACCACCGGTA 60.980 57.895 6.87 0.00 35.25 4.02
2721 11212 1.213013 CGTCTAACTCGTGCAGCCT 59.787 57.895 0.00 0.00 0.00 4.58
2829 11408 1.869774 CTTCCAAGCAAAACCCTTGC 58.130 50.000 1.19 1.19 45.22 4.01
2861 11443 4.691860 AGCATTTGTTTACTGCTGCTAG 57.308 40.909 0.00 0.00 44.21 3.42
2862 11444 3.441572 AGCATTTGTTTACTGCTGCTAGG 59.558 43.478 0.00 0.00 44.21 3.02
2941 11543 7.257722 AGTATAAAAATTCGGGCACAAATCTG 58.742 34.615 0.00 0.00 0.00 2.90
2942 11544 4.335400 AAAAATTCGGGCACAAATCTGT 57.665 36.364 0.00 0.00 35.63 3.41
2943 11545 3.575965 AAATTCGGGCACAAATCTGTC 57.424 42.857 0.00 0.00 31.64 3.51
2944 11546 2.198827 ATTCGGGCACAAATCTGTCA 57.801 45.000 0.00 0.00 31.64 3.58
2945 11547 2.198827 TTCGGGCACAAATCTGTCAT 57.801 45.000 0.00 0.00 31.64 3.06
2946 11548 1.737838 TCGGGCACAAATCTGTCATC 58.262 50.000 0.00 0.00 31.64 2.92
2947 11549 0.374758 CGGGCACAAATCTGTCATCG 59.625 55.000 0.00 0.00 31.64 3.84
2948 11550 0.099436 GGGCACAAATCTGTCATCGC 59.901 55.000 0.00 0.00 31.64 4.58
2949 11551 1.089920 GGCACAAATCTGTCATCGCT 58.910 50.000 0.00 0.00 31.64 4.93
2953 11555 1.278985 ACAAATCTGTCATCGCTCCCA 59.721 47.619 0.00 0.00 0.00 4.37
2956 11558 0.179000 ATCTGTCATCGCTCCCAACC 59.821 55.000 0.00 0.00 0.00 3.77
2960 11562 0.179081 GTCATCGCTCCCAACCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
2961 11563 0.616395 TCATCGCTCCCAACCCTACA 60.616 55.000 0.00 0.00 0.00 2.74
2962 11564 0.462047 CATCGCTCCCAACCCTACAC 60.462 60.000 0.00 0.00 0.00 2.90
2965 11567 3.065306 CTCCCAACCCTACACGCA 58.935 61.111 0.00 0.00 0.00 5.24
2970 11572 2.032071 AACCCTACACGCACCAGC 59.968 61.111 0.00 0.00 37.42 4.85
2987 11589 4.504916 CCGGGCAGCTGACGAGAG 62.505 72.222 26.27 12.99 0.00 3.20
2989 11591 4.154347 GGGCAGCTGACGAGAGGG 62.154 72.222 20.43 0.00 0.00 4.30
2991 11593 2.183046 GCAGCTGACGAGAGGGAC 59.817 66.667 20.43 0.00 0.00 4.46
2993 11595 2.363147 AGCTGACGAGAGGGACCC 60.363 66.667 0.59 0.59 0.00 4.46
2994 11596 2.680352 GCTGACGAGAGGGACCCA 60.680 66.667 14.60 0.00 0.00 4.51
2995 11597 2.283529 GCTGACGAGAGGGACCCAA 61.284 63.158 14.60 0.00 0.00 4.12
2996 11598 1.592223 CTGACGAGAGGGACCCAAC 59.408 63.158 14.60 6.45 0.00 3.77
2997 11599 1.152419 TGACGAGAGGGACCCAACA 60.152 57.895 14.60 0.38 0.00 3.33
2998 11600 1.185618 TGACGAGAGGGACCCAACAG 61.186 60.000 14.60 3.85 0.00 3.16
2999 11601 1.889530 GACGAGAGGGACCCAACAGG 61.890 65.000 14.60 5.09 43.78 4.00
3000 11602 2.671682 GAGAGGGACCCAACAGGC 59.328 66.667 14.60 0.00 40.58 4.85
3001 11603 2.121963 AGAGGGACCCAACAGGCA 60.122 61.111 14.60 0.00 40.58 4.75
3002 11604 2.190488 GAGAGGGACCCAACAGGCAG 62.190 65.000 14.60 0.00 40.58 4.85
3005 11607 4.329545 GGACCCAACAGGCAGCGA 62.330 66.667 0.00 0.00 40.58 4.93
3006 11608 3.050275 GACCCAACAGGCAGCGAC 61.050 66.667 0.00 0.00 40.58 5.19
3007 11609 4.643387 ACCCAACAGGCAGCGACC 62.643 66.667 0.00 0.00 40.58 4.79
3009 11611 4.641645 CCAACAGGCAGCGACCCA 62.642 66.667 0.00 0.00 0.00 4.51
3011 11613 3.560251 AACAGGCAGCGACCCAGT 61.560 61.111 0.00 0.00 0.00 4.00
3012 11614 3.537206 AACAGGCAGCGACCCAGTC 62.537 63.158 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.972458 AAACATTAAGTAAATTTGGCTTTGGT 57.028 26.923 12.79 5.09 0.00 3.67
30 31 9.507280 CGCTTCATTATAAACATGAGAAACATT 57.493 29.630 0.00 0.00 37.07 2.71
143 146 3.687698 ACACGTTAGTTTGCATGGTATCC 59.312 43.478 0.00 0.00 0.00 2.59
173 184 9.847224 GTTAGAGACAAGGGATATTTTGGATAA 57.153 33.333 0.00 0.00 0.00 1.75
201 218 9.935241 AACATAGGATAGTTTGCATATACTCTG 57.065 33.333 0.00 0.00 0.00 3.35
216 234 6.201806 GTGTTGCTGCTTCTAACATAGGATAG 59.798 42.308 6.56 0.00 36.78 2.08
222 240 6.573664 AATTGTGTTGCTGCTTCTAACATA 57.426 33.333 6.56 2.03 36.78 2.29
235 253 2.352503 AGGCGATCAAATTGTGTTGC 57.647 45.000 0.00 0.00 0.00 4.17
239 257 5.065090 TCAACAGATAGGCGATCAAATTGTG 59.935 40.000 10.29 1.11 36.98 3.33
240 258 5.185454 TCAACAGATAGGCGATCAAATTGT 58.815 37.500 10.29 2.75 36.98 2.71
265 289 5.755375 AGTGATGACTAGTGAACAACAACAG 59.245 40.000 0.00 0.00 0.00 3.16
299 327 4.625607 AGTGTTCCTGGAAGAAAGGTAG 57.374 45.455 9.92 0.00 36.14 3.18
332 362 8.411683 GTTCTAAAGCAATTGATGGATGATTCT 58.588 33.333 10.34 0.00 0.00 2.40
373 407 0.958091 TAAGCGTGCCATGCAACTTT 59.042 45.000 12.14 0.00 41.47 2.66
448 482 6.334202 GTTCTCCACCTATCTTGTAGTCTTG 58.666 44.000 0.00 0.00 0.00 3.02
463 499 3.934391 CTGCCCGTCGTTCTCCACC 62.934 68.421 0.00 0.00 0.00 4.61
475 511 4.335647 AACTGTGAGGCCTGCCCG 62.336 66.667 12.00 0.00 39.21 6.13
535 639 2.282745 AGAGCCCTGCAAACTGCC 60.283 61.111 0.00 0.00 44.23 4.85
548 652 1.364626 CGGCTTGTGACCATGAGAGC 61.365 60.000 0.00 0.00 0.00 4.09
550 654 0.247460 CTCGGCTTGTGACCATGAGA 59.753 55.000 0.00 0.00 0.00 3.27
560 664 1.948145 CGATCCTACTACTCGGCTTGT 59.052 52.381 0.00 0.00 0.00 3.16
579 684 1.421485 GCTGCCTGATTTGACGACG 59.579 57.895 0.00 0.00 0.00 5.12
584 689 0.895100 GGTGTGGCTGCCTGATTTGA 60.895 55.000 21.03 0.00 0.00 2.69
607 730 2.587322 TATGGAGAAACAGGGGCGCG 62.587 60.000 0.00 0.00 0.00 6.86
654 777 8.729047 GGATCTCTCCTCCCTTACTGATATATA 58.271 40.741 0.00 0.00 38.65 0.86
655 778 7.187336 TGGATCTCTCCTCCCTTACTGATATAT 59.813 40.741 0.00 0.00 42.59 0.86
661 799 3.320610 TGGATCTCTCCTCCCTTACTG 57.679 52.381 0.00 0.00 42.59 2.74
666 806 1.149711 CTCCATGGATCTCTCCTCCCT 59.850 57.143 16.63 0.00 42.59 4.20
722 884 3.056393 TGTGACGTCCAATTATTCGAGGT 60.056 43.478 14.12 0.00 0.00 3.85
734 896 2.560981 ACATGTGAGTATGTGACGTCCA 59.439 45.455 14.12 11.06 39.68 4.02
784 954 3.440415 CGCTTCTTTTCCCCGCCC 61.440 66.667 0.00 0.00 0.00 6.13
787 957 1.745489 CCTCCGCTTCTTTTCCCCG 60.745 63.158 0.00 0.00 0.00 5.73
791 961 3.502211 TGTTCATTCCTCCGCTTCTTTTC 59.498 43.478 0.00 0.00 0.00 2.29
805 976 5.263185 CAACCGTCCGATATTTGTTCATTC 58.737 41.667 0.00 0.00 0.00 2.67
812 983 1.591158 CGACCAACCGTCCGATATTTG 59.409 52.381 0.00 0.00 38.36 2.32
837 1008 1.290324 GCAGAGTCAAGAGTCGGCA 59.710 57.895 20.21 0.00 46.49 5.69
840 1011 0.796491 GCGAGCAGAGTCAAGAGTCG 60.796 60.000 0.00 0.00 35.94 4.18
862 1040 8.808529 GCACTACTGAATACTGTTACACTATTG 58.191 37.037 2.79 0.00 0.00 1.90
872 1054 1.134788 GCCCGCACTACTGAATACTGT 60.135 52.381 0.00 0.00 0.00 3.55
873 1055 1.134818 TGCCCGCACTACTGAATACTG 60.135 52.381 0.00 0.00 0.00 2.74
874 1056 1.191535 TGCCCGCACTACTGAATACT 58.808 50.000 0.00 0.00 0.00 2.12
875 1057 1.867233 CATGCCCGCACTACTGAATAC 59.133 52.381 0.00 0.00 0.00 1.89
876 1058 1.202639 CCATGCCCGCACTACTGAATA 60.203 52.381 0.00 0.00 0.00 1.75
877 1059 0.464373 CCATGCCCGCACTACTGAAT 60.464 55.000 0.00 0.00 0.00 2.57
878 1060 1.078497 CCATGCCCGCACTACTGAA 60.078 57.895 0.00 0.00 0.00 3.02
927 1121 4.126437 ACGAAACACATGATGACAGTTCA 58.874 39.130 0.00 0.00 35.73 3.18
935 4286 2.154963 ACGAACGACGAAACACATGATG 59.845 45.455 0.00 0.00 45.77 3.07
936 4287 2.400399 ACGAACGACGAAACACATGAT 58.600 42.857 0.00 0.00 45.77 2.45
939 4290 1.784856 CAGACGAACGACGAAACACAT 59.215 47.619 0.00 0.00 45.77 3.21
958 4309 1.337354 CGGGTATATATGGTGCGTGCA 60.337 52.381 0.00 0.00 0.00 4.57
1026 5978 2.693017 GGAGAGGGAGGCAGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
1027 5979 2.445654 GGGAGAGGGAGGCAGAGG 60.446 72.222 0.00 0.00 0.00 3.69
1032 5984 3.086600 CAGTGGGGAGAGGGAGGC 61.087 72.222 0.00 0.00 0.00 4.70
1036 5988 0.326264 CTTTCACAGTGGGGAGAGGG 59.674 60.000 0.00 0.00 0.00 4.30
1037 5989 0.322008 GCTTTCACAGTGGGGAGAGG 60.322 60.000 0.00 0.00 0.00 3.69
1038 5990 0.397941 TGCTTTCACAGTGGGGAGAG 59.602 55.000 0.00 0.00 0.00 3.20
1041 6001 0.257328 TGTTGCTTTCACAGTGGGGA 59.743 50.000 0.00 0.00 0.00 4.81
1048 6008 1.468908 CGCTTGGTTGTTGCTTTCACA 60.469 47.619 0.00 0.00 0.00 3.58
1049 6009 1.199624 CGCTTGGTTGTTGCTTTCAC 58.800 50.000 0.00 0.00 0.00 3.18
1050 6010 0.527385 GCGCTTGGTTGTTGCTTTCA 60.527 50.000 0.00 0.00 0.00 2.69
1058 6021 3.216292 GGTGGTGCGCTTGGTTGT 61.216 61.111 9.73 0.00 0.00 3.32
1062 6025 4.347453 GCTTGGTGGTGCGCTTGG 62.347 66.667 9.73 0.00 0.00 3.61
1082 6045 0.954449 GAGCAAAGCTGAGCAGAGCA 60.954 55.000 7.39 0.00 39.88 4.26
1130 6107 0.393132 GGAGCAAGGTACTGAAGCCC 60.393 60.000 0.00 0.00 40.86 5.19
1141 6118 2.342179 GTCGAAGAAGAAGGAGCAAGG 58.658 52.381 0.00 0.00 39.69 3.61
1395 6375 2.872557 CTCGCGACGGACACCTTA 59.127 61.111 3.71 0.00 0.00 2.69
1428 6414 0.250513 CTCTACTCCACTGGGTTGCC 59.749 60.000 0.00 0.00 34.93 4.52
1430 6416 1.270907 AGCTCTACTCCACTGGGTTG 58.729 55.000 0.00 0.00 34.93 3.77
1439 6425 2.770164 TTCAAGCCAAGCTCTACTCC 57.230 50.000 0.00 0.00 38.25 3.85
1500 6531 7.713942 CACATGAACATTCTCAGATCCTTCATA 59.286 37.037 0.00 0.00 0.00 2.15
1517 6558 0.321919 GGAGCCTCAGCACATGAACA 60.322 55.000 0.00 0.00 43.56 3.18
1561 6610 1.001406 CAGTCGGAGCCAGAAGAAGTT 59.999 52.381 0.00 0.00 0.00 2.66
1562 6611 0.605589 CAGTCGGAGCCAGAAGAAGT 59.394 55.000 0.00 0.00 0.00 3.01
1568 6620 3.071206 GAGCCAGTCGGAGCCAGA 61.071 66.667 0.00 0.00 0.00 3.86
1590 6642 1.299850 CGAACACACACAGAGGCGA 60.300 57.895 0.00 0.00 0.00 5.54
1685 6777 7.994911 AGACAAGTCATGATCAAGGCAAATATA 59.005 33.333 5.22 0.00 0.00 0.86
1688 6780 5.014858 AGACAAGTCATGATCAAGGCAAAT 58.985 37.500 5.22 0.00 0.00 2.32
1695 6787 4.548451 AGCTCAGACAAGTCATGATCAA 57.452 40.909 0.00 0.00 0.00 2.57
1696 6788 4.548451 AAGCTCAGACAAGTCATGATCA 57.452 40.909 0.00 0.00 0.00 2.92
1720 6818 4.572389 AGCGGTTAAGACACATGATCAATC 59.428 41.667 0.00 0.00 0.00 2.67
1731 6865 6.423302 TCAATTTACGTTAAGCGGTTAAGACA 59.577 34.615 19.43 5.37 46.52 3.41
1733 6867 6.401367 GCTCAATTTACGTTAAGCGGTTAAGA 60.401 38.462 19.43 9.93 46.52 2.10
1739 6873 3.124636 AGTGCTCAATTTACGTTAAGCGG 59.875 43.478 0.00 0.00 46.52 5.52
1742 6876 5.511088 ACGAGTGCTCAATTTACGTTAAG 57.489 39.130 0.00 0.00 0.00 1.85
1743 6877 6.380995 TCTACGAGTGCTCAATTTACGTTAA 58.619 36.000 0.00 0.00 34.52 2.01
1744 6878 5.941733 TCTACGAGTGCTCAATTTACGTTA 58.058 37.500 0.00 0.00 34.52 3.18
1745 6879 4.801891 TCTACGAGTGCTCAATTTACGTT 58.198 39.130 0.00 0.00 34.52 3.99
1746 6880 4.413087 CTCTACGAGTGCTCAATTTACGT 58.587 43.478 0.00 0.00 36.52 3.57
1747 6881 3.240861 GCTCTACGAGTGCTCAATTTACG 59.759 47.826 0.00 0.00 32.42 3.18
1748 6882 4.174009 TGCTCTACGAGTGCTCAATTTAC 58.826 43.478 0.00 0.00 35.86 2.01
1749 6883 4.450082 TGCTCTACGAGTGCTCAATTTA 57.550 40.909 0.00 0.00 35.86 1.40
1750 6884 3.319137 TGCTCTACGAGTGCTCAATTT 57.681 42.857 0.00 0.00 35.86 1.82
1752 6886 2.692557 AGATGCTCTACGAGTGCTCAAT 59.307 45.455 0.00 0.00 35.86 2.57
1754 6888 1.756430 AGATGCTCTACGAGTGCTCA 58.244 50.000 0.00 0.00 35.86 4.26
1756 6890 2.226330 CCTAGATGCTCTACGAGTGCT 58.774 52.381 0.00 0.00 35.86 4.40
1757 6891 1.335506 GCCTAGATGCTCTACGAGTGC 60.336 57.143 0.00 0.00 35.45 4.40
1758 6892 1.950216 TGCCTAGATGCTCTACGAGTG 59.050 52.381 0.00 0.00 31.39 3.51
1759 6893 1.950909 GTGCCTAGATGCTCTACGAGT 59.049 52.381 0.00 0.00 31.39 4.18
1760 6894 2.031245 CAGTGCCTAGATGCTCTACGAG 60.031 54.545 0.00 0.00 33.61 4.18
1763 6897 1.410517 TGCAGTGCCTAGATGCTCTAC 59.589 52.381 13.72 0.00 40.62 2.59
1778 6912 0.674895 GCGAGATTTCAGGGTGCAGT 60.675 55.000 0.00 0.00 0.00 4.40
1810 6944 2.648059 GCCATTCACTTGCATAGGAGT 58.352 47.619 0.00 0.00 0.00 3.85
1813 6947 1.382522 ACGCCATTCACTTGCATAGG 58.617 50.000 0.00 0.00 0.00 2.57
1814 6948 3.246226 GTCTACGCCATTCACTTGCATAG 59.754 47.826 0.00 0.00 0.00 2.23
1815 6949 3.194861 GTCTACGCCATTCACTTGCATA 58.805 45.455 0.00 0.00 0.00 3.14
1816 6950 2.009774 GTCTACGCCATTCACTTGCAT 58.990 47.619 0.00 0.00 0.00 3.96
1819 6953 2.413112 CAGTGTCTACGCCATTCACTTG 59.587 50.000 0.00 0.00 37.27 3.16
1821 6955 1.673033 GCAGTGTCTACGCCATTCACT 60.673 52.381 0.00 0.00 39.48 3.41
1823 6957 0.608130 AGCAGTGTCTACGCCATTCA 59.392 50.000 0.00 0.00 0.00 2.57
1826 6960 0.608130 TCAAGCAGTGTCTACGCCAT 59.392 50.000 0.00 0.00 0.00 4.40
1828 6962 0.790814 GTTCAAGCAGTGTCTACGCC 59.209 55.000 0.00 0.00 0.00 5.68
1829 6963 0.435008 CGTTCAAGCAGTGTCTACGC 59.565 55.000 0.00 0.00 0.00 4.42
1830 6964 1.979469 CTCGTTCAAGCAGTGTCTACG 59.021 52.381 0.00 0.00 0.00 3.51
1853 7965 6.375377 GTTTCATTAATAACCAAGCGACACA 58.625 36.000 0.00 0.00 0.00 3.72
1854 7966 5.506832 CGTTTCATTAATAACCAAGCGACAC 59.493 40.000 0.00 0.00 0.00 3.67
1863 7975 3.487879 CCACGGCCGTTTCATTAATAACC 60.488 47.826 32.11 0.00 0.00 2.85
1869 7981 1.893544 TTTCCACGGCCGTTTCATTA 58.106 45.000 32.11 9.39 0.00 1.90
1873 7985 1.001158 TGATTTTTCCACGGCCGTTTC 60.001 47.619 32.11 16.29 0.00 2.78
1890 8002 7.503566 CCCCTGTCTACATGATTAACAAATGAT 59.496 37.037 0.00 0.00 0.00 2.45
1893 8005 6.969043 TCCCCTGTCTACATGATTAACAAAT 58.031 36.000 0.00 0.00 0.00 2.32
1929 8042 4.996788 ATGTTGGCATCTTCTCAAATCC 57.003 40.909 0.00 0.00 0.00 3.01
1949 8063 1.134401 AGCATGCACTAACGCCACTAT 60.134 47.619 21.98 0.00 0.00 2.12
1954 8069 0.652592 CTGTAGCATGCACTAACGCC 59.347 55.000 21.98 0.00 0.00 5.68
1979 9055 6.157820 TCCTTTTTCATTTCTTTTTCCCCAGT 59.842 34.615 0.00 0.00 0.00 4.00
1980 9056 6.591001 TCCTTTTTCATTTCTTTTTCCCCAG 58.409 36.000 0.00 0.00 0.00 4.45
1989 9065 8.141268 TGCTTAACGAATCCTTTTTCATTTCTT 58.859 29.630 0.00 0.00 0.00 2.52
1993 9069 9.353999 GTAATGCTTAACGAATCCTTTTTCATT 57.646 29.630 0.00 0.00 0.00 2.57
2019 9095 3.866883 AGACCAACAACACCACAAAAG 57.133 42.857 0.00 0.00 0.00 2.27
2020 9096 4.379603 CGTTAGACCAACAACACCACAAAA 60.380 41.667 0.00 0.00 36.92 2.44
2027 9112 4.319984 GGGAAATCGTTAGACCAACAACAC 60.320 45.833 0.00 0.00 36.92 3.32
2059 9144 6.441088 AAATCCCTATCATCTTGACTACCC 57.559 41.667 0.00 0.00 0.00 3.69
2060 9145 8.652290 AGTTAAATCCCTATCATCTTGACTACC 58.348 37.037 0.00 0.00 0.00 3.18
2061 9146 9.699703 GAGTTAAATCCCTATCATCTTGACTAC 57.300 37.037 0.00 0.00 0.00 2.73
2063 9148 7.570607 AGGAGTTAAATCCCTATCATCTTGACT 59.429 37.037 18.06 0.00 40.53 3.41
2089 9472 3.372730 GCATGGCCAGGCGAACAA 61.373 61.111 28.54 0.00 0.00 2.83
2106 9489 6.590292 ACAGTACTGGTAGATGAAAATTCGTG 59.410 38.462 26.12 0.00 34.19 4.35
2107 9490 6.698380 ACAGTACTGGTAGATGAAAATTCGT 58.302 36.000 26.12 0.00 34.19 3.85
2137 9549 6.516527 GCAATTACCAATGAGAAGGTTGTCAA 60.517 38.462 0.00 0.00 39.31 3.18
2141 9553 5.389859 TGCAATTACCAATGAGAAGGTTG 57.610 39.130 0.00 0.00 39.31 3.77
2164 9576 7.821652 TCGGAAAATGTTCAGTTGCAAATATA 58.178 30.769 0.00 0.00 35.25 0.86
2165 9577 6.686630 TCGGAAAATGTTCAGTTGCAAATAT 58.313 32.000 0.00 0.00 35.25 1.28
2166 9578 6.078202 TCGGAAAATGTTCAGTTGCAAATA 57.922 33.333 0.00 0.00 35.25 1.40
2167 9579 4.942852 TCGGAAAATGTTCAGTTGCAAAT 58.057 34.783 0.00 0.00 35.25 2.32
2168 9580 4.377839 TCGGAAAATGTTCAGTTGCAAA 57.622 36.364 0.00 0.00 35.25 3.68
2169 9581 4.358851 CTTCGGAAAATGTTCAGTTGCAA 58.641 39.130 0.00 0.00 35.25 4.08
2170 9582 3.243367 CCTTCGGAAAATGTTCAGTTGCA 60.243 43.478 0.00 0.00 35.25 4.08
2171 9583 3.308530 CCTTCGGAAAATGTTCAGTTGC 58.691 45.455 0.00 0.00 35.25 4.17
2172 9584 3.308530 GCCTTCGGAAAATGTTCAGTTG 58.691 45.455 0.00 0.00 35.25 3.16
2173 9585 2.031157 CGCCTTCGGAAAATGTTCAGTT 60.031 45.455 0.00 0.00 35.25 3.16
2174 9586 1.535462 CGCCTTCGGAAAATGTTCAGT 59.465 47.619 0.00 0.00 35.25 3.41
2175 9587 1.535462 ACGCCTTCGGAAAATGTTCAG 59.465 47.619 0.00 0.00 40.69 3.02
2176 9588 1.600023 ACGCCTTCGGAAAATGTTCA 58.400 45.000 0.00 0.00 40.69 3.18
2177 9589 2.699251 AACGCCTTCGGAAAATGTTC 57.301 45.000 0.00 0.00 40.69 3.18
2178 9590 2.096119 CGTAACGCCTTCGGAAAATGTT 60.096 45.455 0.00 0.00 40.69 2.71
2179 9591 1.461897 CGTAACGCCTTCGGAAAATGT 59.538 47.619 0.00 0.00 40.69 2.71
2180 9592 1.201987 CCGTAACGCCTTCGGAAAATG 60.202 52.381 0.00 0.00 46.05 2.32
2181 9593 1.081094 CCGTAACGCCTTCGGAAAAT 58.919 50.000 0.00 0.00 46.05 1.82
2182 9594 0.249826 ACCGTAACGCCTTCGGAAAA 60.250 50.000 13.99 0.00 46.05 2.29
2183 9595 0.945265 CACCGTAACGCCTTCGGAAA 60.945 55.000 13.99 0.00 46.05 3.13
2184 9596 1.373246 CACCGTAACGCCTTCGGAA 60.373 57.895 13.99 0.00 46.05 4.30
2185 9597 2.259204 CACCGTAACGCCTTCGGA 59.741 61.111 13.99 0.00 46.05 4.55
2187 9599 2.431942 AGCACCGTAACGCCTTCG 60.432 61.111 0.00 0.00 42.43 3.79
2188 9600 0.739813 ATCAGCACCGTAACGCCTTC 60.740 55.000 0.00 0.00 0.00 3.46
2189 9601 0.321298 AATCAGCACCGTAACGCCTT 60.321 50.000 0.00 0.00 0.00 4.35
2190 9602 0.533491 TAATCAGCACCGTAACGCCT 59.467 50.000 0.00 0.00 0.00 5.52
2191 9603 0.648958 GTAATCAGCACCGTAACGCC 59.351 55.000 0.00 0.00 0.00 5.68
2192 9604 0.296642 CGTAATCAGCACCGTAACGC 59.703 55.000 0.00 0.00 0.00 4.84
2193 9605 1.580704 GTCGTAATCAGCACCGTAACG 59.419 52.381 0.00 0.00 0.00 3.18
2194 9606 1.580704 CGTCGTAATCAGCACCGTAAC 59.419 52.381 0.00 0.00 0.00 2.50
2195 9607 1.467883 CCGTCGTAATCAGCACCGTAA 60.468 52.381 0.00 0.00 0.00 3.18
2196 9608 0.099259 CCGTCGTAATCAGCACCGTA 59.901 55.000 0.00 0.00 0.00 4.02
2197 9609 1.153901 CCGTCGTAATCAGCACCGT 60.154 57.895 0.00 0.00 0.00 4.83
2198 9610 0.457166 TTCCGTCGTAATCAGCACCG 60.457 55.000 0.00 0.00 0.00 4.94
2199 9611 1.135199 TCTTCCGTCGTAATCAGCACC 60.135 52.381 0.00 0.00 0.00 5.01
2200 9612 2.273370 TCTTCCGTCGTAATCAGCAC 57.727 50.000 0.00 0.00 0.00 4.40
2201 9613 3.520290 ATTCTTCCGTCGTAATCAGCA 57.480 42.857 0.00 0.00 0.00 4.41
2202 9614 4.856664 TCTATTCTTCCGTCGTAATCAGC 58.143 43.478 0.00 0.00 0.00 4.26
2203 9615 4.912766 GCTCTATTCTTCCGTCGTAATCAG 59.087 45.833 0.00 0.00 0.00 2.90
2204 9616 4.579340 AGCTCTATTCTTCCGTCGTAATCA 59.421 41.667 0.00 0.00 0.00 2.57
2205 9617 5.110940 AGCTCTATTCTTCCGTCGTAATC 57.889 43.478 0.00 0.00 0.00 1.75
2206 9618 5.530171 TGTAGCTCTATTCTTCCGTCGTAAT 59.470 40.000 0.00 0.00 0.00 1.89
2207 9619 4.877823 TGTAGCTCTATTCTTCCGTCGTAA 59.122 41.667 0.00 0.00 0.00 3.18
2208 9620 4.272018 GTGTAGCTCTATTCTTCCGTCGTA 59.728 45.833 0.00 0.00 0.00 3.43
2209 9621 3.065095 GTGTAGCTCTATTCTTCCGTCGT 59.935 47.826 0.00 0.00 0.00 4.34
2210 9622 3.064958 TGTGTAGCTCTATTCTTCCGTCG 59.935 47.826 0.00 0.00 0.00 5.12
2211 9623 4.634184 TGTGTAGCTCTATTCTTCCGTC 57.366 45.455 0.00 0.00 0.00 4.79
2212 9624 5.599999 ATTGTGTAGCTCTATTCTTCCGT 57.400 39.130 0.00 0.00 0.00 4.69
2213 9625 7.148641 ACATATTGTGTAGCTCTATTCTTCCG 58.851 38.462 0.00 0.00 39.91 4.30
2214 9626 9.982651 TTACATATTGTGTAGCTCTATTCTTCC 57.017 33.333 0.00 0.00 43.79 3.46
2220 9632 8.798402 GGAGACTTACATATTGTGTAGCTCTAT 58.202 37.037 0.00 0.00 43.79 1.98
2221 9633 7.778382 TGGAGACTTACATATTGTGTAGCTCTA 59.222 37.037 0.00 9.22 43.79 2.43
2222 9634 6.607600 TGGAGACTTACATATTGTGTAGCTCT 59.392 38.462 0.00 9.26 43.79 4.09
2223 9635 6.806751 TGGAGACTTACATATTGTGTAGCTC 58.193 40.000 0.00 9.56 43.79 4.09
2224 9636 6.791867 TGGAGACTTACATATTGTGTAGCT 57.208 37.500 0.00 0.00 43.79 3.32
2225 9637 7.042335 AGTTGGAGACTTACATATTGTGTAGC 58.958 38.462 0.00 0.00 43.79 3.58
2228 9640 7.549488 GCTAAGTTGGAGACTTACATATTGTGT 59.451 37.037 0.00 0.00 46.61 3.72
2229 9641 7.549134 TGCTAAGTTGGAGACTTACATATTGTG 59.451 37.037 0.00 0.00 46.61 3.33
2230 9642 7.620880 TGCTAAGTTGGAGACTTACATATTGT 58.379 34.615 0.00 0.00 46.61 2.71
2231 9643 8.668510 ATGCTAAGTTGGAGACTTACATATTG 57.331 34.615 0.00 0.00 46.61 1.90
2235 9647 9.686683 AATTAATGCTAAGTTGGAGACTTACAT 57.313 29.630 0.00 2.78 46.61 2.29
2236 9648 9.162764 GAATTAATGCTAAGTTGGAGACTTACA 57.837 33.333 0.00 0.90 46.61 2.41
2237 9649 9.384764 AGAATTAATGCTAAGTTGGAGACTTAC 57.615 33.333 0.00 0.00 46.61 2.34
2238 9650 9.383519 CAGAATTAATGCTAAGTTGGAGACTTA 57.616 33.333 0.00 0.00 46.61 2.24
2240 9652 6.825721 CCAGAATTAATGCTAAGTTGGAGACT 59.174 38.462 0.00 0.00 41.47 3.24
2241 9653 6.823689 TCCAGAATTAATGCTAAGTTGGAGAC 59.176 38.462 0.00 0.00 0.00 3.36
2242 9654 6.957631 TCCAGAATTAATGCTAAGTTGGAGA 58.042 36.000 0.00 0.00 0.00 3.71
2243 9655 6.825721 ACTCCAGAATTAATGCTAAGTTGGAG 59.174 38.462 20.05 20.05 40.88 3.86
2244 9656 6.599244 CACTCCAGAATTAATGCTAAGTTGGA 59.401 38.462 7.61 5.01 0.00 3.53
2245 9657 6.375455 ACACTCCAGAATTAATGCTAAGTTGG 59.625 38.462 7.61 1.24 0.00 3.77
2246 9658 7.383102 ACACTCCAGAATTAATGCTAAGTTG 57.617 36.000 7.61 6.85 0.00 3.16
2247 9659 8.322091 AGTACACTCCAGAATTAATGCTAAGTT 58.678 33.333 7.61 4.28 0.00 2.66
2248 9660 7.852263 AGTACACTCCAGAATTAATGCTAAGT 58.148 34.615 0.00 0.47 0.00 2.24
2249 9661 9.469807 CTAGTACACTCCAGAATTAATGCTAAG 57.530 37.037 0.00 0.00 0.00 2.18
2250 9662 7.926555 GCTAGTACACTCCAGAATTAATGCTAA 59.073 37.037 0.00 0.00 0.00 3.09
2251 9663 7.069455 TGCTAGTACACTCCAGAATTAATGCTA 59.931 37.037 0.00 0.00 0.00 3.49
2252 9664 6.127054 TGCTAGTACACTCCAGAATTAATGCT 60.127 38.462 0.00 0.00 0.00 3.79
2253 9665 6.049149 TGCTAGTACACTCCAGAATTAATGC 58.951 40.000 0.00 0.00 0.00 3.56
2254 9666 8.492673 TTTGCTAGTACACTCCAGAATTAATG 57.507 34.615 0.00 0.00 0.00 1.90
2255 9667 7.770897 CCTTTGCTAGTACACTCCAGAATTAAT 59.229 37.037 0.00 0.00 0.00 1.40
2256 9668 7.103641 CCTTTGCTAGTACACTCCAGAATTAA 58.896 38.462 0.00 0.00 0.00 1.40
2257 9669 6.351881 CCCTTTGCTAGTACACTCCAGAATTA 60.352 42.308 0.00 0.00 0.00 1.40
2258 9670 5.491982 CCTTTGCTAGTACACTCCAGAATT 58.508 41.667 0.00 0.00 0.00 2.17
2259 9671 4.080863 CCCTTTGCTAGTACACTCCAGAAT 60.081 45.833 0.00 0.00 0.00 2.40
2260 9672 3.260884 CCCTTTGCTAGTACACTCCAGAA 59.739 47.826 0.00 0.00 0.00 3.02
2261 9673 2.832129 CCCTTTGCTAGTACACTCCAGA 59.168 50.000 0.00 0.00 0.00 3.86
2262 9674 2.567615 ACCCTTTGCTAGTACACTCCAG 59.432 50.000 0.00 0.00 0.00 3.86
2263 9675 2.565834 GACCCTTTGCTAGTACACTCCA 59.434 50.000 0.00 0.00 0.00 3.86
2264 9676 2.416972 CGACCCTTTGCTAGTACACTCC 60.417 54.545 0.00 0.00 0.00 3.85
2265 9677 2.490903 TCGACCCTTTGCTAGTACACTC 59.509 50.000 0.00 0.00 0.00 3.51
2266 9678 2.492484 CTCGACCCTTTGCTAGTACACT 59.508 50.000 0.00 0.00 0.00 3.55
2267 9679 2.490903 TCTCGACCCTTTGCTAGTACAC 59.509 50.000 0.00 0.00 0.00 2.90
2268 9680 2.799017 TCTCGACCCTTTGCTAGTACA 58.201 47.619 0.00 0.00 0.00 2.90
2269 9681 3.863142 TTCTCGACCCTTTGCTAGTAC 57.137 47.619 0.00 0.00 0.00 2.73
2270 9682 4.877378 TTTTCTCGACCCTTTGCTAGTA 57.123 40.909 0.00 0.00 0.00 1.82
2271 9683 3.764237 TTTTCTCGACCCTTTGCTAGT 57.236 42.857 0.00 0.00 0.00 2.57
2301 9713 9.981114 CAGTTCATAAATTACTCAAGGGTTTTT 57.019 29.630 0.00 0.00 0.00 1.94
2302 9714 9.362151 TCAGTTCATAAATTACTCAAGGGTTTT 57.638 29.630 0.00 0.00 0.00 2.43
2303 9715 8.934023 TCAGTTCATAAATTACTCAAGGGTTT 57.066 30.769 0.00 0.00 0.00 3.27
2304 9716 8.960591 CATCAGTTCATAAATTACTCAAGGGTT 58.039 33.333 0.00 0.00 0.00 4.11
2305 9717 8.109634 ACATCAGTTCATAAATTACTCAAGGGT 58.890 33.333 0.00 0.00 0.00 4.34
2306 9718 8.511604 ACATCAGTTCATAAATTACTCAAGGG 57.488 34.615 0.00 0.00 0.00 3.95
2313 9725 9.490663 GCAGTGTTACATCAGTTCATAAATTAC 57.509 33.333 0.00 0.00 0.00 1.89
2314 9726 8.673711 GGCAGTGTTACATCAGTTCATAAATTA 58.326 33.333 0.00 0.00 0.00 1.40
2315 9727 7.362920 GGGCAGTGTTACATCAGTTCATAAATT 60.363 37.037 0.00 0.00 0.00 1.82
2316 9728 6.095440 GGGCAGTGTTACATCAGTTCATAAAT 59.905 38.462 0.00 0.00 0.00 1.40
2317 9729 5.414454 GGGCAGTGTTACATCAGTTCATAAA 59.586 40.000 0.00 0.00 0.00 1.40
2318 9730 4.941263 GGGCAGTGTTACATCAGTTCATAA 59.059 41.667 0.00 0.00 0.00 1.90
2319 9731 4.513442 GGGCAGTGTTACATCAGTTCATA 58.487 43.478 0.00 0.00 0.00 2.15
2320 9732 3.347216 GGGCAGTGTTACATCAGTTCAT 58.653 45.455 0.00 0.00 0.00 2.57
2321 9733 2.552155 GGGGCAGTGTTACATCAGTTCA 60.552 50.000 0.00 0.00 0.00 3.18
2322 9734 2.084546 GGGGCAGTGTTACATCAGTTC 58.915 52.381 0.00 0.00 0.00 3.01
2323 9735 1.423541 TGGGGCAGTGTTACATCAGTT 59.576 47.619 0.00 0.00 0.00 3.16
2324 9736 1.064003 TGGGGCAGTGTTACATCAGT 58.936 50.000 0.00 0.00 0.00 3.41
2325 9737 1.453155 GTGGGGCAGTGTTACATCAG 58.547 55.000 0.00 0.00 0.00 2.90
2326 9738 0.037590 GGTGGGGCAGTGTTACATCA 59.962 55.000 0.00 0.00 0.00 3.07
2327 9739 0.679960 GGGTGGGGCAGTGTTACATC 60.680 60.000 0.00 0.00 0.00 3.06
2328 9740 1.382629 GGGTGGGGCAGTGTTACAT 59.617 57.895 0.00 0.00 0.00 2.29
2329 9741 2.836187 GGGGTGGGGCAGTGTTACA 61.836 63.158 0.00 0.00 0.00 2.41
2330 9742 2.035155 GGGGTGGGGCAGTGTTAC 59.965 66.667 0.00 0.00 0.00 2.50
2331 9743 3.642503 CGGGGTGGGGCAGTGTTA 61.643 66.667 0.00 0.00 0.00 2.41
2338 9750 2.292785 AATAATCACCGGGGTGGGGC 62.293 60.000 17.31 0.00 42.91 5.80
2339 9751 0.179001 GAATAATCACCGGGGTGGGG 60.179 60.000 17.31 0.00 45.43 4.96
2340 9752 0.548989 TGAATAATCACCGGGGTGGG 59.451 55.000 17.31 0.00 45.43 4.61
2341 9753 2.428544 TTGAATAATCACCGGGGTGG 57.571 50.000 17.31 0.00 45.43 4.61
2342 9754 4.792521 TTTTTGAATAATCACCGGGGTG 57.207 40.909 11.66 11.66 46.64 4.61
2360 9772 2.009681 ATGAGCGGGTTTCCCTTTTT 57.990 45.000 3.25 0.00 42.67 1.94
2361 9773 2.009681 AATGAGCGGGTTTCCCTTTT 57.990 45.000 3.25 0.00 42.67 2.27
2362 9774 2.891191 TAATGAGCGGGTTTCCCTTT 57.109 45.000 3.25 0.00 42.67 3.11
2363 9775 3.053619 AGAATAATGAGCGGGTTTCCCTT 60.054 43.478 3.25 0.00 42.67 3.95
2364 9776 2.509964 AGAATAATGAGCGGGTTTCCCT 59.490 45.455 3.25 0.00 42.67 4.20
2365 9777 2.879026 GAGAATAATGAGCGGGTTTCCC 59.121 50.000 0.00 0.00 41.09 3.97
2366 9778 2.879026 GGAGAATAATGAGCGGGTTTCC 59.121 50.000 0.00 0.00 0.00 3.13
2367 9779 3.541632 TGGAGAATAATGAGCGGGTTTC 58.458 45.455 0.00 0.00 0.00 2.78
2368 9780 3.644966 TGGAGAATAATGAGCGGGTTT 57.355 42.857 0.00 0.00 0.00 3.27
2369 9781 3.864789 ATGGAGAATAATGAGCGGGTT 57.135 42.857 0.00 0.00 0.00 4.11
2370 9782 3.864789 AATGGAGAATAATGAGCGGGT 57.135 42.857 0.00 0.00 0.00 5.28
2371 9783 4.580167 TCAAAATGGAGAATAATGAGCGGG 59.420 41.667 0.00 0.00 0.00 6.13
2372 9784 5.297776 ACTCAAAATGGAGAATAATGAGCGG 59.702 40.000 0.00 0.00 35.78 5.52
2373 9785 6.037500 TCACTCAAAATGGAGAATAATGAGCG 59.962 38.462 0.00 0.00 35.78 5.03
2374 9786 7.325660 TCACTCAAAATGGAGAATAATGAGC 57.674 36.000 0.00 0.00 35.78 4.26
2375 9787 7.914346 GCTTCACTCAAAATGGAGAATAATGAG 59.086 37.037 0.00 0.00 38.30 2.90
2376 9788 7.394077 TGCTTCACTCAAAATGGAGAATAATGA 59.606 33.333 0.00 0.00 38.30 2.57
2377 9789 7.541162 TGCTTCACTCAAAATGGAGAATAATG 58.459 34.615 0.00 0.00 38.30 1.90
2378 9790 7.613022 TCTGCTTCACTCAAAATGGAGAATAAT 59.387 33.333 0.00 0.00 38.30 1.28
2379 9791 6.942005 TCTGCTTCACTCAAAATGGAGAATAA 59.058 34.615 0.00 0.00 38.30 1.40
2380 9792 6.475504 TCTGCTTCACTCAAAATGGAGAATA 58.524 36.000 0.00 0.00 38.30 1.75
2381 9793 5.319453 TCTGCTTCACTCAAAATGGAGAAT 58.681 37.500 0.00 0.00 38.30 2.40
2382 9794 4.717877 TCTGCTTCACTCAAAATGGAGAA 58.282 39.130 0.00 0.00 38.30 2.87
2383 9795 4.356405 TCTGCTTCACTCAAAATGGAGA 57.644 40.909 0.00 0.00 38.30 3.71
2384 9796 5.218139 GTTTCTGCTTCACTCAAAATGGAG 58.782 41.667 0.00 0.00 40.79 3.86
2385 9797 4.644234 TGTTTCTGCTTCACTCAAAATGGA 59.356 37.500 0.00 0.00 0.00 3.41
2386 9798 4.935702 TGTTTCTGCTTCACTCAAAATGG 58.064 39.130 0.00 0.00 0.00 3.16
2387 9799 5.824429 TCTGTTTCTGCTTCACTCAAAATG 58.176 37.500 0.00 0.00 0.00 2.32
2388 9800 5.506982 GCTCTGTTTCTGCTTCACTCAAAAT 60.507 40.000 0.00 0.00 0.00 1.82
2389 9801 4.201950 GCTCTGTTTCTGCTTCACTCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
2390 9802 3.313526 GCTCTGTTTCTGCTTCACTCAAA 59.686 43.478 0.00 0.00 0.00 2.69
2391 9803 2.874701 GCTCTGTTTCTGCTTCACTCAA 59.125 45.455 0.00 0.00 0.00 3.02
2392 9804 2.487934 GCTCTGTTTCTGCTTCACTCA 58.512 47.619 0.00 0.00 0.00 3.41
2393 9805 1.803555 GGCTCTGTTTCTGCTTCACTC 59.196 52.381 0.00 0.00 0.00 3.51
2394 9806 1.419387 AGGCTCTGTTTCTGCTTCACT 59.581 47.619 0.00 0.00 0.00 3.41
2395 9807 1.889545 AGGCTCTGTTTCTGCTTCAC 58.110 50.000 0.00 0.00 0.00 3.18
2409 9821 5.882557 TGATTTCTGGTGAAAAGATAGGCTC 59.117 40.000 0.00 0.00 44.22 4.70
2442 9861 9.134734 TGTAGAGTTTTTGTGCAACTTTTTAAG 57.865 29.630 0.00 0.00 38.04 1.85
2469 9888 3.612479 GCAATGCAAAGGAACCACTAGTG 60.612 47.826 16.34 16.34 0.00 2.74
2470 9889 2.558359 GCAATGCAAAGGAACCACTAGT 59.442 45.455 0.00 0.00 0.00 2.57
2509 9959 9.073368 CGACCCTACATACTAATATTTCAATCG 57.927 37.037 0.00 0.00 0.00 3.34
2510 9960 9.367444 CCGACCCTACATACTAATATTTCAATC 57.633 37.037 0.00 0.00 0.00 2.67
2511 9961 7.822822 GCCGACCCTACATACTAATATTTCAAT 59.177 37.037 0.00 0.00 0.00 2.57
2512 9962 7.156673 GCCGACCCTACATACTAATATTTCAA 58.843 38.462 0.00 0.00 0.00 2.69
2516 10418 5.046807 GGTGCCGACCCTACATACTAATATT 60.047 44.000 0.00 0.00 36.03 1.28
2520 10422 2.034124 GGTGCCGACCCTACATACTAA 58.966 52.381 0.00 0.00 36.03 2.24
2547 10449 1.625616 GGTTGTACGGTCATCAGACG 58.374 55.000 0.00 0.00 45.92 4.18
2597 10499 2.105128 GTCCGTCGGATCCAGCTG 59.895 66.667 18.75 6.78 32.73 4.24
2598 10500 3.518998 CGTCCGTCGGATCCAGCT 61.519 66.667 18.75 0.00 32.73 4.24
2639 10570 2.126189 GCACGTACCGGTGGTCTC 60.126 66.667 19.93 5.58 38.36 3.36
2705 10636 0.456221 GCTAGGCTGCACGAGTTAGA 59.544 55.000 0.50 0.00 0.00 2.10
2708 11199 2.266055 GGCTAGGCTGCACGAGTT 59.734 61.111 9.46 0.00 34.04 3.01
2876 11464 0.317269 CACAGTCGCTTTGTTGGCTG 60.317 55.000 0.00 0.00 0.00 4.85
2941 11543 0.179081 GTAGGGTTGGGAGCGATGAC 60.179 60.000 0.00 0.00 0.00 3.06
2942 11544 0.616395 TGTAGGGTTGGGAGCGATGA 60.616 55.000 0.00 0.00 0.00 2.92
2943 11545 0.462047 GTGTAGGGTTGGGAGCGATG 60.462 60.000 0.00 0.00 0.00 3.84
2944 11546 1.905512 GTGTAGGGTTGGGAGCGAT 59.094 57.895 0.00 0.00 0.00 4.58
2945 11547 2.642254 CGTGTAGGGTTGGGAGCGA 61.642 63.158 0.00 0.00 0.00 4.93
2946 11548 2.125673 CGTGTAGGGTTGGGAGCG 60.126 66.667 0.00 0.00 0.00 5.03
2947 11549 2.436115 GCGTGTAGGGTTGGGAGC 60.436 66.667 0.00 0.00 0.00 4.70
2948 11550 1.375523 GTGCGTGTAGGGTTGGGAG 60.376 63.158 0.00 0.00 0.00 4.30
2949 11551 2.745037 GTGCGTGTAGGGTTGGGA 59.255 61.111 0.00 0.00 0.00 4.37
2953 11555 2.032071 GCTGGTGCGTGTAGGGTT 59.968 61.111 0.00 0.00 0.00 4.11
2970 11572 4.504916 CTCTCGTCAGCTGCCCGG 62.505 72.222 20.60 13.55 0.00 5.73
2972 11574 4.154347 CCCTCTCGTCAGCTGCCC 62.154 72.222 9.47 0.46 0.00 5.36
2976 11578 2.363147 GGGTCCCTCTCGTCAGCT 60.363 66.667 0.00 0.00 0.00 4.24
2979 11581 1.152419 TGTTGGGTCCCTCTCGTCA 60.152 57.895 10.00 0.00 0.00 4.35
2980 11582 1.592223 CTGTTGGGTCCCTCTCGTC 59.408 63.158 10.00 0.00 0.00 4.20
2981 11583 1.913762 CCTGTTGGGTCCCTCTCGT 60.914 63.158 10.00 0.00 0.00 4.18
2982 11584 2.982130 CCTGTTGGGTCCCTCTCG 59.018 66.667 10.00 0.00 0.00 4.04
2983 11585 2.190488 CTGCCTGTTGGGTCCCTCTC 62.190 65.000 10.00 0.06 37.43 3.20
2984 11586 2.121963 TGCCTGTTGGGTCCCTCT 60.122 61.111 10.00 0.00 37.43 3.69
2986 11588 3.971702 GCTGCCTGTTGGGTCCCT 61.972 66.667 10.00 0.00 37.43 4.20
2989 11591 3.050275 GTCGCTGCCTGTTGGGTC 61.050 66.667 0.00 0.00 37.43 4.46
2993 11595 3.052082 CTGGGTCGCTGCCTGTTG 61.052 66.667 0.00 0.00 0.00 3.33
2994 11596 3.537206 GACTGGGTCGCTGCCTGTT 62.537 63.158 0.00 0.00 0.00 3.16
2995 11597 4.008933 GACTGGGTCGCTGCCTGT 62.009 66.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.