Multiple sequence alignment - TraesCS2D01G454700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G454700 chr2D 100.000 2291 0 0 1 2291 562858104 562860394 0.000000e+00 4231
1 TraesCS2D01G454700 chr2D 86.565 655 69 8 842 1479 562895623 562896275 0.000000e+00 704
2 TraesCS2D01G454700 chr2D 88.247 502 48 6 841 1335 563008813 563009310 7.050000e-165 590
3 TraesCS2D01G454700 chr2D 85.687 531 37 20 956 1481 562850776 562851272 7.250000e-145 523
4 TraesCS2D01G454700 chr2D 88.095 126 11 4 1803 1928 562896801 562896922 1.830000e-31 147
5 TraesCS2D01G454700 chr2D 92.553 94 6 1 1384 1477 563009318 563009410 1.430000e-27 134
6 TraesCS2D01G454700 chr2A 92.302 1377 66 17 571 1929 703381599 703382953 0.000000e+00 1919
7 TraesCS2D01G454700 chr2A 92.832 558 30 5 1 550 703381056 703381611 0.000000e+00 800
8 TraesCS2D01G454700 chr2A 90.395 531 42 8 956 1481 703353758 703354284 0.000000e+00 689
9 TraesCS2D01G454700 chr2A 83.947 760 80 19 753 1481 703399987 703400735 0.000000e+00 689
10 TraesCS2D01G454700 chr2A 83.175 737 81 25 753 1481 703402759 703403460 3.210000e-178 634
11 TraesCS2D01G454700 chr2A 86.294 197 22 4 1732 1928 703354506 703354697 2.310000e-50 209
12 TraesCS2D01G454700 chr2A 90.476 147 11 3 1783 1928 703403853 703403997 8.350000e-45 191
13 TraesCS2D01G454700 chr2A 84.043 188 25 5 1742 1928 703401782 703401965 2.340000e-40 176
14 TraesCS2D01G454700 chr2B 94.035 1207 65 6 723 1928 673227384 673228584 0.000000e+00 1823
15 TraesCS2D01G454700 chr2B 89.603 529 47 5 956 1479 673170627 673171152 0.000000e+00 665
16 TraesCS2D01G454700 chr2B 86.623 613 52 20 753 1363 673241720 673242304 0.000000e+00 651
17 TraesCS2D01G454700 chr2B 86.282 554 55 13 1 550 673225698 673226234 1.180000e-162 582
18 TraesCS2D01G454700 chr2B 87.302 189 17 7 1742 1928 673242813 673242996 2.310000e-50 209
19 TraesCS2D01G454700 chr2B 87.586 145 12 3 571 715 673226222 673226360 1.820000e-36 163
20 TraesCS2D01G454700 chr6D 99.455 367 2 0 1925 2291 16019882 16019516 0.000000e+00 667
21 TraesCS2D01G454700 chr6D 99.455 367 2 0 1925 2291 402152688 402152322 0.000000e+00 667
22 TraesCS2D01G454700 chr5D 99.455 367 2 0 1925 2291 362986292 362985926 0.000000e+00 667
23 TraesCS2D01G454700 chr5D 99.455 367 2 0 1925 2291 370599596 370599962 0.000000e+00 667
24 TraesCS2D01G454700 chr5D 99.455 367 2 0 1925 2291 377186091 377186457 0.000000e+00 667
25 TraesCS2D01G454700 chr5D 99.455 367 2 0 1925 2291 391955509 391955875 0.000000e+00 667
26 TraesCS2D01G454700 chr4D 99.455 367 2 0 1925 2291 16471005 16471371 0.000000e+00 667
27 TraesCS2D01G454700 chr4D 99.455 367 2 0 1925 2291 218876368 218876002 0.000000e+00 667
28 TraesCS2D01G454700 chr1D 99.455 367 2 0 1925 2291 7962398 7962764 0.000000e+00 667


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G454700 chr2D 562858104 562860394 2290 False 4231.0 4231 100.00000 1 2291 1 chr2D.!!$F2 2290
1 TraesCS2D01G454700 chr2D 562895623 562896922 1299 False 425.5 704 87.33000 842 1928 2 chr2D.!!$F3 1086
2 TraesCS2D01G454700 chr2D 563008813 563009410 597 False 362.0 590 90.40000 841 1477 2 chr2D.!!$F4 636
3 TraesCS2D01G454700 chr2A 703381056 703382953 1897 False 1359.5 1919 92.56700 1 1929 2 chr2A.!!$F2 1928
4 TraesCS2D01G454700 chr2A 703353758 703354697 939 False 449.0 689 88.34450 956 1928 2 chr2A.!!$F1 972
5 TraesCS2D01G454700 chr2A 703399987 703403997 4010 False 422.5 689 85.41025 753 1928 4 chr2A.!!$F3 1175
6 TraesCS2D01G454700 chr2B 673225698 673228584 2886 False 856.0 1823 89.30100 1 1928 3 chr2B.!!$F2 1927
7 TraesCS2D01G454700 chr2B 673170627 673171152 525 False 665.0 665 89.60300 956 1479 1 chr2B.!!$F1 523
8 TraesCS2D01G454700 chr2B 673241720 673242996 1276 False 430.0 651 86.96250 753 1928 2 chr2B.!!$F3 1175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 1827 0.742281 GCCACACGCTCATGAGTCAT 60.742 55.0 23.38 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 6519 0.16923 GTGACGTTTGGCACACACAA 59.831 50.0 4.48 0.0 39.27 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 46 7.596749 AGTGGTAACGTTTTTATCTCAGATG 57.403 36.000 5.91 0.00 42.51 2.90
96 100 9.745018 ATTTCAAAAGAGGATGTGATTAAGAGA 57.255 29.630 0.00 0.00 0.00 3.10
312 324 4.037565 CCCGTACAATATCACTAGCTGACA 59.962 45.833 0.00 0.00 0.00 3.58
313 325 5.215903 CCGTACAATATCACTAGCTGACAG 58.784 45.833 0.00 0.00 0.00 3.51
355 367 3.896122 TCTAACGCCACTTGAAAATTGC 58.104 40.909 0.00 0.00 0.00 3.56
368 380 4.898320 TGAAAATTGCAGTCTAGCTCTCA 58.102 39.130 0.00 0.00 34.99 3.27
372 384 6.639632 AAATTGCAGTCTAGCTCTCAAAAA 57.360 33.333 0.00 0.00 34.99 1.94
525 537 8.687824 ATTAAGCATAACATTTGCAGTTGTAC 57.312 30.769 4.27 0.00 42.62 2.90
799 1827 0.742281 GCCACACGCTCATGAGTCAT 60.742 55.000 23.38 0.00 0.00 3.06
872 1900 3.093172 GAGCCTTCCCCTCCCCTG 61.093 72.222 0.00 0.00 0.00 4.45
1382 5186 1.941294 GCGAGACGAAGGAGACAGATA 59.059 52.381 0.00 0.00 0.00 1.98
1532 5458 2.877786 TGCAGCACCATATGTAAATCGG 59.122 45.455 1.24 0.00 0.00 4.18
1610 5549 3.791245 TGAGCTTTGCATTTTCCGTTTT 58.209 36.364 0.00 0.00 0.00 2.43
1867 6171 4.450080 ACTTTAGTTAAGTTAGTGCACGCC 59.550 41.667 12.01 3.15 44.73 5.68
1889 6194 2.695147 ACAGCAAAAGGTGGAAAGAAGG 59.305 45.455 0.00 0.00 0.00 3.46
1895 6200 2.503895 AGGTGGAAAGAAGGCATGAG 57.496 50.000 0.00 0.00 0.00 2.90
1928 6233 5.621228 CGTTAAGCATTCACTTCACTTTGTC 59.379 40.000 0.00 0.00 0.00 3.18
1930 6235 2.549754 AGCATTCACTTCACTTTGTCCG 59.450 45.455 0.00 0.00 0.00 4.79
1931 6236 2.350772 GCATTCACTTCACTTTGTCCGG 60.351 50.000 0.00 0.00 0.00 5.14
1932 6237 2.992124 TTCACTTCACTTTGTCCGGA 57.008 45.000 0.00 0.00 0.00 5.14
1933 6238 2.992124 TCACTTCACTTTGTCCGGAA 57.008 45.000 5.23 0.00 0.00 4.30
1934 6239 3.269538 TCACTTCACTTTGTCCGGAAA 57.730 42.857 5.23 0.00 0.00 3.13
1935 6240 3.815809 TCACTTCACTTTGTCCGGAAAT 58.184 40.909 5.23 0.00 0.00 2.17
1936 6241 3.813166 TCACTTCACTTTGTCCGGAAATC 59.187 43.478 5.23 0.00 0.00 2.17
1937 6242 2.806244 ACTTCACTTTGTCCGGAAATCG 59.194 45.455 5.23 0.00 38.88 3.34
1938 6243 2.536761 TCACTTTGTCCGGAAATCGT 57.463 45.000 5.23 0.00 37.11 3.73
1939 6244 3.663995 TCACTTTGTCCGGAAATCGTA 57.336 42.857 5.23 0.00 37.11 3.43
1940 6245 3.992643 TCACTTTGTCCGGAAATCGTAA 58.007 40.909 5.23 0.00 37.11 3.18
1941 6246 4.571919 TCACTTTGTCCGGAAATCGTAAT 58.428 39.130 5.23 0.00 37.11 1.89
1942 6247 5.722263 TCACTTTGTCCGGAAATCGTAATA 58.278 37.500 5.23 0.00 37.11 0.98
1943 6248 5.577945 TCACTTTGTCCGGAAATCGTAATAC 59.422 40.000 5.23 0.00 37.11 1.89
1944 6249 5.349270 CACTTTGTCCGGAAATCGTAATACA 59.651 40.000 5.23 0.00 37.11 2.29
1945 6250 6.036735 CACTTTGTCCGGAAATCGTAATACAT 59.963 38.462 5.23 0.00 37.11 2.29
1946 6251 5.977171 TTGTCCGGAAATCGTAATACATG 57.023 39.130 5.23 0.00 37.11 3.21
1947 6252 5.013568 TGTCCGGAAATCGTAATACATGT 57.986 39.130 5.23 2.69 37.11 3.21
1948 6253 4.806775 TGTCCGGAAATCGTAATACATGTG 59.193 41.667 5.23 0.00 37.11 3.21
1949 6254 4.807304 GTCCGGAAATCGTAATACATGTGT 59.193 41.667 5.23 0.00 37.11 3.72
1950 6255 4.806775 TCCGGAAATCGTAATACATGTGTG 59.193 41.667 9.11 0.00 37.11 3.82
1951 6256 4.806775 CCGGAAATCGTAATACATGTGTGA 59.193 41.667 9.11 0.00 37.11 3.58
1952 6257 5.292345 CCGGAAATCGTAATACATGTGTGAA 59.708 40.000 9.11 0.00 37.11 3.18
1953 6258 6.018262 CCGGAAATCGTAATACATGTGTGAAT 60.018 38.462 9.11 0.00 37.11 2.57
1954 6259 7.170151 CCGGAAATCGTAATACATGTGTGAATA 59.830 37.037 9.11 0.00 37.11 1.75
1955 6260 8.002107 CGGAAATCGTAATACATGTGTGAATAC 58.998 37.037 9.11 0.76 0.00 1.89
1956 6261 8.822855 GGAAATCGTAATACATGTGTGAATACA 58.177 33.333 9.11 0.00 34.63 2.29
1961 6266 9.673454 TCGTAATACATGTGTGAATACATAGAC 57.327 33.333 9.11 0.00 39.17 2.59
1962 6267 8.912658 CGTAATACATGTGTGAATACATAGACC 58.087 37.037 9.11 0.00 39.17 3.85
1963 6268 9.758651 GTAATACATGTGTGAATACATAGACCA 57.241 33.333 9.11 0.00 39.17 4.02
1964 6269 8.662781 AATACATGTGTGAATACATAGACCAC 57.337 34.615 9.11 0.00 39.17 4.16
1965 6270 6.048732 ACATGTGTGAATACATAGACCACA 57.951 37.500 0.00 0.00 39.17 4.17
1966 6271 6.472016 ACATGTGTGAATACATAGACCACAA 58.528 36.000 0.00 0.00 39.17 3.33
1967 6272 6.371548 ACATGTGTGAATACATAGACCACAAC 59.628 38.462 0.00 0.00 39.17 3.32
1968 6273 5.242434 TGTGTGAATACATAGACCACAACC 58.758 41.667 0.00 0.00 39.13 3.77
1969 6274 5.012664 TGTGTGAATACATAGACCACAACCT 59.987 40.000 0.00 0.00 39.13 3.50
1970 6275 5.351465 GTGTGAATACATAGACCACAACCTG 59.649 44.000 0.00 0.00 39.13 4.00
1971 6276 5.012664 TGTGAATACATAGACCACAACCTGT 59.987 40.000 0.00 0.00 35.16 4.00
1972 6277 5.581085 GTGAATACATAGACCACAACCTGTC 59.419 44.000 0.00 0.00 0.00 3.51
1973 6278 4.755266 ATACATAGACCACAACCTGTCC 57.245 45.455 0.00 0.00 31.76 4.02
1974 6279 1.628846 ACATAGACCACAACCTGTCCC 59.371 52.381 0.00 0.00 31.76 4.46
1975 6280 1.909302 CATAGACCACAACCTGTCCCT 59.091 52.381 0.00 0.00 31.76 4.20
1976 6281 3.104512 CATAGACCACAACCTGTCCCTA 58.895 50.000 0.00 0.00 31.76 3.53
1977 6282 1.645710 AGACCACAACCTGTCCCTAG 58.354 55.000 0.00 0.00 31.76 3.02
1978 6283 1.132817 AGACCACAACCTGTCCCTAGT 60.133 52.381 0.00 0.00 31.76 2.57
1979 6284 2.111255 AGACCACAACCTGTCCCTAGTA 59.889 50.000 0.00 0.00 31.76 1.82
1980 6285 2.901839 GACCACAACCTGTCCCTAGTAA 59.098 50.000 0.00 0.00 0.00 2.24
1981 6286 2.904434 ACCACAACCTGTCCCTAGTAAG 59.096 50.000 0.00 0.00 0.00 2.34
1982 6287 2.354805 CCACAACCTGTCCCTAGTAAGC 60.355 54.545 0.00 0.00 0.00 3.09
1983 6288 1.907255 ACAACCTGTCCCTAGTAAGCC 59.093 52.381 0.00 0.00 0.00 4.35
1984 6289 2.188817 CAACCTGTCCCTAGTAAGCCT 58.811 52.381 0.00 0.00 0.00 4.58
1985 6290 2.162264 ACCTGTCCCTAGTAAGCCTC 57.838 55.000 0.00 0.00 0.00 4.70
1986 6291 1.646977 ACCTGTCCCTAGTAAGCCTCT 59.353 52.381 0.00 0.00 0.00 3.69
1987 6292 2.857498 ACCTGTCCCTAGTAAGCCTCTA 59.143 50.000 0.00 0.00 0.00 2.43
1988 6293 3.117436 ACCTGTCCCTAGTAAGCCTCTAG 60.117 52.174 0.00 0.00 35.86 2.43
1989 6294 3.117436 CCTGTCCCTAGTAAGCCTCTAGT 60.117 52.174 0.00 0.00 34.72 2.57
1990 6295 4.538738 CTGTCCCTAGTAAGCCTCTAGTT 58.461 47.826 0.00 0.00 34.72 2.24
1991 6296 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
1992 6297 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
1993 6298 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
1994 6299 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
1995 6300 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
1996 6301 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
2009 6314 7.672351 CTAGTTGACTAGATCGTTGATCAAC 57.328 40.000 25.68 25.68 46.80 3.18
2010 6315 6.025749 AGTTGACTAGATCGTTGATCAACA 57.974 37.500 32.06 21.47 45.30 3.33
2011 6316 6.096036 AGTTGACTAGATCGTTGATCAACAG 58.904 40.000 32.06 24.19 45.30 3.16
2012 6317 5.897377 TGACTAGATCGTTGATCAACAGA 57.103 39.130 32.06 28.05 41.12 3.41
2013 6318 6.456795 TGACTAGATCGTTGATCAACAGAT 57.543 37.500 32.06 30.48 41.12 2.90
2014 6319 7.568199 TGACTAGATCGTTGATCAACAGATA 57.432 36.000 32.06 20.24 41.12 1.98
2015 6320 7.643579 TGACTAGATCGTTGATCAACAGATAG 58.356 38.462 32.06 26.86 41.12 2.08
2016 6321 7.283354 TGACTAGATCGTTGATCAACAGATAGT 59.717 37.037 32.06 28.88 41.12 2.12
2017 6322 7.644490 ACTAGATCGTTGATCAACAGATAGTC 58.356 38.462 32.06 22.79 41.12 2.59
2018 6323 6.456795 AGATCGTTGATCAACAGATAGTCA 57.543 37.500 32.06 12.43 41.12 3.41
2019 6324 7.048629 AGATCGTTGATCAACAGATAGTCAT 57.951 36.000 32.06 16.50 41.12 3.06
2020 6325 6.922407 AGATCGTTGATCAACAGATAGTCATG 59.078 38.462 32.06 15.48 41.12 3.07
2021 6326 5.351458 TCGTTGATCAACAGATAGTCATGG 58.649 41.667 32.06 15.04 41.20 3.66
2022 6327 5.105351 TCGTTGATCAACAGATAGTCATGGT 60.105 40.000 32.06 0.00 41.20 3.55
2023 6328 5.582269 CGTTGATCAACAGATAGTCATGGTT 59.418 40.000 32.06 0.00 41.20 3.67
2024 6329 6.092670 CGTTGATCAACAGATAGTCATGGTTT 59.907 38.462 32.06 0.00 41.20 3.27
2025 6330 7.467623 GTTGATCAACAGATAGTCATGGTTTC 58.532 38.462 29.43 0.00 40.84 2.78
2026 6331 6.115446 TGATCAACAGATAGTCATGGTTTCC 58.885 40.000 0.00 0.00 0.00 3.13
2027 6332 5.762179 TCAACAGATAGTCATGGTTTCCT 57.238 39.130 0.00 0.00 0.00 3.36
2028 6333 5.491070 TCAACAGATAGTCATGGTTTCCTG 58.509 41.667 0.00 0.00 0.00 3.86
2029 6334 5.248248 TCAACAGATAGTCATGGTTTCCTGA 59.752 40.000 10.65 0.00 0.00 3.86
2030 6335 5.091261 ACAGATAGTCATGGTTTCCTGAC 57.909 43.478 10.65 8.96 41.65 3.51
2036 6341 4.487714 GTCATGGTTTCCTGACTATGGA 57.512 45.455 0.00 0.00 38.56 3.41
2037 6342 4.192317 GTCATGGTTTCCTGACTATGGAC 58.808 47.826 0.00 0.00 38.56 4.02
2038 6343 3.843619 TCATGGTTTCCTGACTATGGACA 59.156 43.478 0.00 0.00 38.56 4.02
2039 6344 4.474651 TCATGGTTTCCTGACTATGGACAT 59.525 41.667 0.00 0.00 38.56 3.06
2040 6345 4.927267 TGGTTTCCTGACTATGGACATT 57.073 40.909 0.00 0.00 32.65 2.71
2041 6346 4.588899 TGGTTTCCTGACTATGGACATTG 58.411 43.478 0.00 0.00 32.65 2.82
2042 6347 3.947834 GGTTTCCTGACTATGGACATTGG 59.052 47.826 0.00 0.00 32.65 3.16
2043 6348 4.324254 GGTTTCCTGACTATGGACATTGGA 60.324 45.833 0.00 0.00 32.65 3.53
2044 6349 5.440610 GTTTCCTGACTATGGACATTGGAT 58.559 41.667 0.00 0.00 32.65 3.41
2045 6350 4.694760 TCCTGACTATGGACATTGGATG 57.305 45.455 0.00 0.00 0.00 3.51
2058 6363 5.756195 ACATTGGATGTCATTGATAACGG 57.244 39.130 0.00 0.00 39.92 4.44
2059 6364 4.580167 ACATTGGATGTCATTGATAACGGG 59.420 41.667 0.00 0.00 39.92 5.28
2060 6365 4.495690 TTGGATGTCATTGATAACGGGA 57.504 40.909 0.00 0.00 0.00 5.14
2061 6366 4.705110 TGGATGTCATTGATAACGGGAT 57.295 40.909 0.00 0.00 0.00 3.85
2062 6367 4.641396 TGGATGTCATTGATAACGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
2063 6368 4.102367 TGGATGTCATTGATAACGGGATCA 59.898 41.667 0.00 0.00 33.96 2.92
2064 6369 4.452455 GGATGTCATTGATAACGGGATCAC 59.548 45.833 0.00 0.00 35.56 3.06
2065 6370 4.479786 TGTCATTGATAACGGGATCACA 57.520 40.909 0.00 0.00 35.56 3.58
2066 6371 5.034852 TGTCATTGATAACGGGATCACAT 57.965 39.130 0.00 0.00 35.56 3.21
2067 6372 5.056480 TGTCATTGATAACGGGATCACATC 58.944 41.667 0.00 0.00 35.56 3.06
2068 6373 5.056480 GTCATTGATAACGGGATCACATCA 58.944 41.667 0.00 0.00 35.56 3.07
2069 6374 5.702670 GTCATTGATAACGGGATCACATCAT 59.297 40.000 0.00 0.00 35.56 2.45
2070 6375 6.205464 GTCATTGATAACGGGATCACATCATT 59.795 38.462 0.00 0.00 35.56 2.57
2071 6376 7.387673 GTCATTGATAACGGGATCACATCATTA 59.612 37.037 0.00 0.00 35.56 1.90
2072 6377 7.603784 TCATTGATAACGGGATCACATCATTAG 59.396 37.037 0.00 0.00 35.56 1.73
2073 6378 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
2074 6379 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
2075 6380 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
2076 6381 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
2077 6382 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
2078 6383 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
2079 6384 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
2080 6385 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
2081 6386 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
2089 6394 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
2090 6395 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
2091 6396 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
2092 6397 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
2093 6398 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
2094 6399 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
2095 6400 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
2096 6401 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
2097 6402 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
2098 6403 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
2099 6404 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
2100 6405 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
2101 6406 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
2102 6407 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
2103 6408 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
2104 6409 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
2105 6410 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
2106 6411 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
2107 6412 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
2108 6413 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
2109 6414 3.372025 GGACAAGACCCAATCCTAAGCAT 60.372 47.826 0.00 0.00 0.00 3.79
2110 6415 4.141482 GGACAAGACCCAATCCTAAGCATA 60.141 45.833 0.00 0.00 0.00 3.14
2111 6416 5.041191 ACAAGACCCAATCCTAAGCATAG 57.959 43.478 0.00 0.00 0.00 2.23
2112 6417 3.778954 AGACCCAATCCTAAGCATAGC 57.221 47.619 0.00 0.00 0.00 2.97
2113 6418 3.048600 AGACCCAATCCTAAGCATAGCA 58.951 45.455 0.00 0.00 0.00 3.49
2114 6419 3.654806 AGACCCAATCCTAAGCATAGCAT 59.345 43.478 0.00 0.00 0.00 3.79
2115 6420 4.846367 AGACCCAATCCTAAGCATAGCATA 59.154 41.667 0.00 0.00 0.00 3.14
2116 6421 5.310594 AGACCCAATCCTAAGCATAGCATAA 59.689 40.000 0.00 0.00 0.00 1.90
2117 6422 5.952387 ACCCAATCCTAAGCATAGCATAAA 58.048 37.500 0.00 0.00 0.00 1.40
2118 6423 6.372931 ACCCAATCCTAAGCATAGCATAAAA 58.627 36.000 0.00 0.00 0.00 1.52
2119 6424 6.491403 ACCCAATCCTAAGCATAGCATAAAAG 59.509 38.462 0.00 0.00 0.00 2.27
2120 6425 6.716628 CCCAATCCTAAGCATAGCATAAAAGA 59.283 38.462 0.00 0.00 0.00 2.52
2121 6426 7.395489 CCCAATCCTAAGCATAGCATAAAAGAT 59.605 37.037 0.00 0.00 0.00 2.40
2122 6427 8.457261 CCAATCCTAAGCATAGCATAAAAGATC 58.543 37.037 0.00 0.00 0.00 2.75
2123 6428 7.840342 ATCCTAAGCATAGCATAAAAGATCG 57.160 36.000 0.00 0.00 0.00 3.69
2124 6429 6.759272 TCCTAAGCATAGCATAAAAGATCGT 58.241 36.000 0.00 0.00 0.00 3.73
2125 6430 6.646653 TCCTAAGCATAGCATAAAAGATCGTG 59.353 38.462 0.00 0.00 0.00 4.35
2126 6431 6.425114 CCTAAGCATAGCATAAAAGATCGTGT 59.575 38.462 0.00 0.00 0.00 4.49
2127 6432 7.598869 CCTAAGCATAGCATAAAAGATCGTGTA 59.401 37.037 0.00 0.00 0.00 2.90
2128 6433 7.413475 AAGCATAGCATAAAAGATCGTGTAG 57.587 36.000 0.00 0.00 0.00 2.74
2129 6434 6.516718 AGCATAGCATAAAAGATCGTGTAGT 58.483 36.000 0.00 0.00 0.00 2.73
2130 6435 6.986817 AGCATAGCATAAAAGATCGTGTAGTT 59.013 34.615 0.00 0.00 0.00 2.24
2131 6436 7.495934 AGCATAGCATAAAAGATCGTGTAGTTT 59.504 33.333 0.00 0.00 0.00 2.66
2132 6437 7.794349 GCATAGCATAAAAGATCGTGTAGTTTC 59.206 37.037 0.00 0.00 0.00 2.78
2133 6438 6.332504 AGCATAAAAGATCGTGTAGTTTCG 57.667 37.500 0.00 0.00 0.00 3.46
2134 6439 5.867716 AGCATAAAAGATCGTGTAGTTTCGT 59.132 36.000 0.00 0.00 0.00 3.85
2135 6440 6.367969 AGCATAAAAGATCGTGTAGTTTCGTT 59.632 34.615 0.00 0.00 0.00 3.85
2136 6441 7.013529 GCATAAAAGATCGTGTAGTTTCGTTT 58.986 34.615 0.00 0.00 0.00 3.60
2137 6442 7.006210 GCATAAAAGATCGTGTAGTTTCGTTTG 59.994 37.037 0.00 0.00 0.00 2.93
2138 6443 4.385244 AAGATCGTGTAGTTTCGTTTGC 57.615 40.909 0.00 0.00 0.00 3.68
2139 6444 3.650139 AGATCGTGTAGTTTCGTTTGCT 58.350 40.909 0.00 0.00 0.00 3.91
2140 6445 4.801891 AGATCGTGTAGTTTCGTTTGCTA 58.198 39.130 0.00 0.00 0.00 3.49
2141 6446 4.857588 AGATCGTGTAGTTTCGTTTGCTAG 59.142 41.667 0.00 0.00 0.00 3.42
2142 6447 4.227512 TCGTGTAGTTTCGTTTGCTAGA 57.772 40.909 0.00 0.00 0.00 2.43
2143 6448 4.224433 TCGTGTAGTTTCGTTTGCTAGAG 58.776 43.478 0.00 0.00 0.00 2.43
2144 6449 3.181543 CGTGTAGTTTCGTTTGCTAGAGC 60.182 47.826 0.00 0.00 42.50 4.09
2145 6450 3.988517 GTGTAGTTTCGTTTGCTAGAGCT 59.011 43.478 2.72 0.00 42.66 4.09
2146 6451 4.448060 GTGTAGTTTCGTTTGCTAGAGCTT 59.552 41.667 2.72 0.00 42.66 3.74
2147 6452 5.050295 GTGTAGTTTCGTTTGCTAGAGCTTT 60.050 40.000 2.72 0.00 42.66 3.51
2148 6453 5.526111 TGTAGTTTCGTTTGCTAGAGCTTTT 59.474 36.000 2.72 0.00 42.66 2.27
2149 6454 5.096954 AGTTTCGTTTGCTAGAGCTTTTC 57.903 39.130 2.72 0.00 42.66 2.29
2150 6455 4.023963 AGTTTCGTTTGCTAGAGCTTTTCC 60.024 41.667 2.72 0.00 42.66 3.13
2151 6456 3.120321 TCGTTTGCTAGAGCTTTTCCA 57.880 42.857 2.72 0.00 42.66 3.53
2152 6457 3.472652 TCGTTTGCTAGAGCTTTTCCAA 58.527 40.909 2.72 0.00 42.66 3.53
2153 6458 4.072131 TCGTTTGCTAGAGCTTTTCCAAT 58.928 39.130 2.72 0.00 42.66 3.16
2154 6459 4.083324 TCGTTTGCTAGAGCTTTTCCAATG 60.083 41.667 2.72 0.00 42.66 2.82
2155 6460 4.320494 CGTTTGCTAGAGCTTTTCCAATGT 60.320 41.667 2.72 0.00 42.66 2.71
2156 6461 5.157067 GTTTGCTAGAGCTTTTCCAATGTC 58.843 41.667 2.72 0.00 42.66 3.06
2157 6462 4.019792 TGCTAGAGCTTTTCCAATGTCA 57.980 40.909 2.72 0.00 42.66 3.58
2158 6463 4.397420 TGCTAGAGCTTTTCCAATGTCAA 58.603 39.130 2.72 0.00 42.66 3.18
2159 6464 4.456911 TGCTAGAGCTTTTCCAATGTCAAG 59.543 41.667 2.72 0.00 42.66 3.02
2160 6465 4.457257 GCTAGAGCTTTTCCAATGTCAAGT 59.543 41.667 0.00 0.00 38.21 3.16
2161 6466 5.643777 GCTAGAGCTTTTCCAATGTCAAGTA 59.356 40.000 0.00 0.00 38.21 2.24
2162 6467 6.317391 GCTAGAGCTTTTCCAATGTCAAGTAT 59.683 38.462 0.00 0.00 38.21 2.12
2163 6468 6.749923 AGAGCTTTTCCAATGTCAAGTATC 57.250 37.500 0.00 0.00 0.00 2.24
2164 6469 6.479884 AGAGCTTTTCCAATGTCAAGTATCT 58.520 36.000 0.00 0.00 0.00 1.98
2165 6470 6.944862 AGAGCTTTTCCAATGTCAAGTATCTT 59.055 34.615 0.00 0.00 0.00 2.40
2166 6471 7.449704 AGAGCTTTTCCAATGTCAAGTATCTTT 59.550 33.333 0.00 0.00 0.00 2.52
2167 6472 7.955918 AGCTTTTCCAATGTCAAGTATCTTTT 58.044 30.769 0.00 0.00 0.00 2.27
2168 6473 8.084684 AGCTTTTCCAATGTCAAGTATCTTTTC 58.915 33.333 0.00 0.00 0.00 2.29
2169 6474 7.329471 GCTTTTCCAATGTCAAGTATCTTTTCC 59.671 37.037 0.00 0.00 0.00 3.13
2170 6475 8.477419 TTTTCCAATGTCAAGTATCTTTTCCT 57.523 30.769 0.00 0.00 0.00 3.36
2171 6476 8.477419 TTTCCAATGTCAAGTATCTTTTCCTT 57.523 30.769 0.00 0.00 0.00 3.36
2172 6477 9.581289 TTTCCAATGTCAAGTATCTTTTCCTTA 57.419 29.630 0.00 0.00 0.00 2.69
2173 6478 8.792830 TCCAATGTCAAGTATCTTTTCCTTAG 57.207 34.615 0.00 0.00 0.00 2.18
2174 6479 8.602424 TCCAATGTCAAGTATCTTTTCCTTAGA 58.398 33.333 0.00 0.00 0.00 2.10
2175 6480 8.669243 CCAATGTCAAGTATCTTTTCCTTAGAC 58.331 37.037 0.00 0.00 0.00 2.59
2176 6481 8.669243 CAATGTCAAGTATCTTTTCCTTAGACC 58.331 37.037 0.00 0.00 0.00 3.85
2177 6482 7.311092 TGTCAAGTATCTTTTCCTTAGACCA 57.689 36.000 0.00 0.00 0.00 4.02
2178 6483 7.918076 TGTCAAGTATCTTTTCCTTAGACCAT 58.082 34.615 0.00 0.00 0.00 3.55
2179 6484 7.824289 TGTCAAGTATCTTTTCCTTAGACCATG 59.176 37.037 0.00 0.00 0.00 3.66
2180 6485 8.041323 GTCAAGTATCTTTTCCTTAGACCATGA 58.959 37.037 0.00 0.00 0.00 3.07
2181 6486 8.260818 TCAAGTATCTTTTCCTTAGACCATGAG 58.739 37.037 0.00 0.00 0.00 2.90
2182 6487 7.979786 AGTATCTTTTCCTTAGACCATGAGA 57.020 36.000 0.00 0.00 0.00 3.27
2183 6488 8.560124 AGTATCTTTTCCTTAGACCATGAGAT 57.440 34.615 0.00 0.00 0.00 2.75
2184 6489 8.646900 AGTATCTTTTCCTTAGACCATGAGATC 58.353 37.037 0.00 0.00 0.00 2.75
2185 6490 5.907207 TCTTTTCCTTAGACCATGAGATCG 58.093 41.667 0.00 0.00 0.00 3.69
2186 6491 5.422331 TCTTTTCCTTAGACCATGAGATCGT 59.578 40.000 0.00 0.00 0.00 3.73
2187 6492 4.655762 TTCCTTAGACCATGAGATCGTG 57.344 45.455 0.00 0.00 0.00 4.35
2188 6493 2.362397 TCCTTAGACCATGAGATCGTGC 59.638 50.000 0.00 0.00 0.00 5.34
2189 6494 2.101415 CCTTAGACCATGAGATCGTGCA 59.899 50.000 0.00 0.00 0.00 4.57
2190 6495 3.430790 CCTTAGACCATGAGATCGTGCAA 60.431 47.826 0.00 0.00 0.00 4.08
2191 6496 2.015736 AGACCATGAGATCGTGCAAC 57.984 50.000 0.00 0.00 0.00 4.17
2192 6497 1.552337 AGACCATGAGATCGTGCAACT 59.448 47.619 0.00 0.00 31.75 3.16
2193 6498 1.929836 GACCATGAGATCGTGCAACTC 59.070 52.381 0.00 0.00 31.75 3.01
2194 6499 1.293924 CCATGAGATCGTGCAACTCC 58.706 55.000 0.00 0.00 31.75 3.85
2195 6500 1.293924 CATGAGATCGTGCAACTCCC 58.706 55.000 0.00 0.00 31.75 4.30
2196 6501 0.179100 ATGAGATCGTGCAACTCCCG 60.179 55.000 0.00 0.00 31.75 5.14
2197 6502 1.519455 GAGATCGTGCAACTCCCGG 60.519 63.158 0.00 0.00 31.75 5.73
2198 6503 1.945354 GAGATCGTGCAACTCCCGGA 61.945 60.000 0.73 0.00 31.75 5.14
2199 6504 1.144057 GATCGTGCAACTCCCGGAT 59.856 57.895 0.73 0.00 31.75 4.18
2200 6505 0.387929 GATCGTGCAACTCCCGGATA 59.612 55.000 0.73 0.00 31.75 2.59
2201 6506 0.104304 ATCGTGCAACTCCCGGATAC 59.896 55.000 0.73 0.00 31.75 2.24
2202 6507 1.520787 CGTGCAACTCCCGGATACC 60.521 63.158 0.73 0.00 31.75 2.73
2204 6509 1.985662 TGCAACTCCCGGATACCGT 60.986 57.895 0.73 0.00 46.80 4.83
2205 6510 0.683828 TGCAACTCCCGGATACCGTA 60.684 55.000 0.73 0.00 46.80 4.02
2206 6511 0.031721 GCAACTCCCGGATACCGTAG 59.968 60.000 0.73 8.43 46.80 3.51
2221 6526 1.865865 CGTAGGAGTGCTTTGTGTGT 58.134 50.000 0.00 0.00 0.00 3.72
2222 6527 1.526887 CGTAGGAGTGCTTTGTGTGTG 59.473 52.381 0.00 0.00 0.00 3.82
2223 6528 1.264288 GTAGGAGTGCTTTGTGTGTGC 59.736 52.381 0.00 0.00 0.00 4.57
2224 6529 1.103398 AGGAGTGCTTTGTGTGTGCC 61.103 55.000 0.00 0.00 0.00 5.01
2225 6530 1.383456 GGAGTGCTTTGTGTGTGCCA 61.383 55.000 0.00 0.00 0.00 4.92
2226 6531 0.455410 GAGTGCTTTGTGTGTGCCAA 59.545 50.000 0.00 0.00 0.00 4.52
2227 6532 0.894141 AGTGCTTTGTGTGTGCCAAA 59.106 45.000 0.00 0.00 0.00 3.28
2228 6533 0.998669 GTGCTTTGTGTGTGCCAAAC 59.001 50.000 0.00 0.00 0.00 2.93
2229 6534 0.457509 TGCTTTGTGTGTGCCAAACG 60.458 50.000 0.00 0.00 0.00 3.60
2230 6535 0.457681 GCTTTGTGTGTGCCAAACGT 60.458 50.000 0.00 0.00 0.00 3.99
2231 6536 1.544686 CTTTGTGTGTGCCAAACGTC 58.455 50.000 0.00 0.00 0.00 4.34
2232 6537 0.881796 TTTGTGTGTGCCAAACGTCA 59.118 45.000 0.00 0.00 0.00 4.35
2233 6538 0.169230 TTGTGTGTGCCAAACGTCAC 59.831 50.000 0.00 0.00 37.02 3.67
2234 6539 0.955919 TGTGTGTGCCAAACGTCACA 60.956 50.000 3.87 3.87 41.00 3.58
2235 6540 0.169230 GTGTGTGCCAAACGTCACAA 59.831 50.000 9.13 0.00 43.78 3.33
2236 6541 0.169230 TGTGTGCCAAACGTCACAAC 59.831 50.000 9.13 5.43 43.78 3.32
2246 6551 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
2247 6552 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
2248 6553 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
2249 6554 2.228138 TCACAACGTAACTGGGTGAC 57.772 50.000 0.00 0.00 33.88 3.67
2250 6555 1.758280 TCACAACGTAACTGGGTGACT 59.242 47.619 0.00 0.00 33.88 3.41
2251 6556 2.957680 TCACAACGTAACTGGGTGACTA 59.042 45.455 0.00 0.00 33.88 2.59
2252 6557 3.575256 TCACAACGTAACTGGGTGACTAT 59.425 43.478 0.00 0.00 33.88 2.12
2253 6558 4.766373 TCACAACGTAACTGGGTGACTATA 59.234 41.667 0.00 0.00 33.88 1.31
2254 6559 5.243507 TCACAACGTAACTGGGTGACTATAA 59.756 40.000 0.00 0.00 33.88 0.98
2255 6560 5.927689 CACAACGTAACTGGGTGACTATAAA 59.072 40.000 0.00 0.00 0.00 1.40
2256 6561 6.090358 CACAACGTAACTGGGTGACTATAAAG 59.910 42.308 0.00 0.00 0.00 1.85
2257 6562 5.334724 ACGTAACTGGGTGACTATAAAGG 57.665 43.478 0.00 0.00 0.00 3.11
2258 6563 4.774200 ACGTAACTGGGTGACTATAAAGGT 59.226 41.667 0.00 0.00 0.00 3.50
2259 6564 5.107133 CGTAACTGGGTGACTATAAAGGTG 58.893 45.833 0.00 0.00 0.00 4.00
2260 6565 3.629142 ACTGGGTGACTATAAAGGTGC 57.371 47.619 0.00 0.00 0.00 5.01
2261 6566 2.910319 ACTGGGTGACTATAAAGGTGCA 59.090 45.455 0.00 0.00 0.00 4.57
2262 6567 3.523564 ACTGGGTGACTATAAAGGTGCAT 59.476 43.478 0.00 0.00 0.00 3.96
2263 6568 4.018415 ACTGGGTGACTATAAAGGTGCATT 60.018 41.667 0.00 0.00 0.00 3.56
2264 6569 5.190925 ACTGGGTGACTATAAAGGTGCATTA 59.809 40.000 0.00 0.00 0.00 1.90
2265 6570 5.433526 TGGGTGACTATAAAGGTGCATTAC 58.566 41.667 0.00 0.00 0.00 1.89
2266 6571 4.510340 GGGTGACTATAAAGGTGCATTACG 59.490 45.833 0.00 0.00 0.00 3.18
2267 6572 4.510340 GGTGACTATAAAGGTGCATTACGG 59.490 45.833 0.00 0.00 0.00 4.02
2268 6573 4.510340 GTGACTATAAAGGTGCATTACGGG 59.490 45.833 0.00 0.00 0.00 5.28
2269 6574 4.162698 TGACTATAAAGGTGCATTACGGGT 59.837 41.667 0.00 0.00 0.00 5.28
2270 6575 5.363292 TGACTATAAAGGTGCATTACGGGTA 59.637 40.000 0.00 0.00 0.00 3.69
2271 6576 6.042322 TGACTATAAAGGTGCATTACGGGTAT 59.958 38.462 0.00 0.00 0.00 2.73
2272 6577 6.461640 ACTATAAAGGTGCATTACGGGTATC 58.538 40.000 0.00 0.00 0.00 2.24
2273 6578 3.926058 AAAGGTGCATTACGGGTATCT 57.074 42.857 0.00 0.00 0.00 1.98
2274 6579 3.470645 AAGGTGCATTACGGGTATCTC 57.529 47.619 0.00 0.00 0.00 2.75
2275 6580 1.692519 AGGTGCATTACGGGTATCTCC 59.307 52.381 0.00 0.00 0.00 3.71
2286 6591 3.166489 GGGTATCTCCGAAAGTGTCTG 57.834 52.381 0.00 0.00 37.00 3.51
2287 6592 2.496470 GGGTATCTCCGAAAGTGTCTGT 59.504 50.000 0.00 0.00 37.00 3.41
2288 6593 3.056035 GGGTATCTCCGAAAGTGTCTGTT 60.056 47.826 0.00 0.00 37.00 3.16
2289 6594 3.927142 GGTATCTCCGAAAGTGTCTGTTG 59.073 47.826 0.00 0.00 0.00 3.33
2290 6595 2.526304 TCTCCGAAAGTGTCTGTTGG 57.474 50.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.887406 AGATAAAAACGTTACCACTATTTTGTG 57.113 29.630 0.00 0.00 37.66 3.33
43 46 3.669251 AGCTCTAGACTTGGACAACAC 57.331 47.619 0.00 0.00 0.00 3.32
209 219 5.686834 CAATTGCGGATGATATGTTCTGAG 58.313 41.667 0.00 0.00 0.00 3.35
292 304 7.704271 TGTACTGTCAGCTAGTGATATTGTAC 58.296 38.462 0.00 0.00 37.56 2.90
300 312 3.889538 ACACTTGTACTGTCAGCTAGTGA 59.110 43.478 20.43 0.00 38.60 3.41
303 315 3.914966 CGAACACTTGTACTGTCAGCTAG 59.085 47.826 0.00 0.00 0.00 3.42
306 318 1.192534 GCGAACACTTGTACTGTCAGC 59.807 52.381 0.00 0.00 0.00 4.26
312 324 6.341316 AGATTGATATGCGAACACTTGTACT 58.659 36.000 0.00 0.00 0.00 2.73
313 325 6.589830 AGATTGATATGCGAACACTTGTAC 57.410 37.500 0.00 0.00 0.00 2.90
511 523 5.940192 TGGTCTTAGTACAACTGCAAATG 57.060 39.130 0.00 0.00 0.00 2.32
553 565 7.533289 ACGAAATATCCTCCTTTTCCAAAAA 57.467 32.000 0.00 0.00 0.00 1.94
554 566 7.533289 AACGAAATATCCTCCTTTTCCAAAA 57.467 32.000 0.00 0.00 0.00 2.44
555 567 7.231722 TGAAACGAAATATCCTCCTTTTCCAAA 59.768 33.333 0.00 0.00 0.00 3.28
556 568 6.717540 TGAAACGAAATATCCTCCTTTTCCAA 59.282 34.615 0.00 0.00 0.00 3.53
557 569 6.242396 TGAAACGAAATATCCTCCTTTTCCA 58.758 36.000 0.00 0.00 0.00 3.53
558 570 6.598064 TCTGAAACGAAATATCCTCCTTTTCC 59.402 38.462 0.00 0.00 0.00 3.13
559 571 7.611213 TCTGAAACGAAATATCCTCCTTTTC 57.389 36.000 0.00 0.00 0.00 2.29
560 572 9.681062 TTATCTGAAACGAAATATCCTCCTTTT 57.319 29.630 0.00 0.00 0.00 2.27
561 573 9.110502 GTTATCTGAAACGAAATATCCTCCTTT 57.889 33.333 0.00 0.00 0.00 3.11
562 574 8.265055 TGTTATCTGAAACGAAATATCCTCCTT 58.735 33.333 0.00 0.00 31.76 3.36
563 575 7.792032 TGTTATCTGAAACGAAATATCCTCCT 58.208 34.615 0.00 0.00 31.76 3.69
564 576 8.499162 CATGTTATCTGAAACGAAATATCCTCC 58.501 37.037 0.00 0.00 31.76 4.30
565 577 9.261180 TCATGTTATCTGAAACGAAATATCCTC 57.739 33.333 0.00 0.00 31.76 3.71
566 578 9.613428 TTCATGTTATCTGAAACGAAATATCCT 57.387 29.630 0.00 0.00 29.96 3.24
572 584 9.389755 TGGATATTCATGTTATCTGAAACGAAA 57.610 29.630 14.07 0.00 36.30 3.46
573 585 8.956533 TGGATATTCATGTTATCTGAAACGAA 57.043 30.769 14.07 0.00 36.30 3.85
610 622 7.097192 TGCGAAGTGTTCAAGAATACTAGAAT 58.903 34.615 11.75 0.00 41.03 2.40
616 628 6.855914 TCAAAATGCGAAGTGTTCAAGAATAC 59.144 34.615 1.95 1.95 33.35 1.89
618 630 5.830912 TCAAAATGCGAAGTGTTCAAGAAT 58.169 33.333 0.00 0.00 0.00 2.40
620 632 4.891627 TCAAAATGCGAAGTGTTCAAGA 57.108 36.364 0.00 0.00 0.00 3.02
621 633 5.459762 ACATTCAAAATGCGAAGTGTTCAAG 59.540 36.000 0.00 0.00 0.00 3.02
622 634 5.347342 ACATTCAAAATGCGAAGTGTTCAA 58.653 33.333 0.00 0.00 0.00 2.69
623 635 4.930963 ACATTCAAAATGCGAAGTGTTCA 58.069 34.783 0.00 0.00 0.00 3.18
624 636 6.984740 TTACATTCAAAATGCGAAGTGTTC 57.015 33.333 0.00 0.00 0.00 3.18
799 1827 3.070446 ACGTGGAAATACAGGACAGTTCA 59.930 43.478 0.00 0.00 0.00 3.18
869 1897 2.743928 GAGCGAGTTGGGTGCAGG 60.744 66.667 0.00 0.00 0.00 4.85
1382 5186 1.218316 GGCGAGACAAACCGGAGAT 59.782 57.895 9.46 0.00 0.00 2.75
1532 5458 4.990426 CCAAACATGGATTCAAAGTGGTTC 59.010 41.667 0.00 0.00 0.00 3.62
1610 5549 1.763968 AGAGATGAACGGTGATCGGA 58.236 50.000 0.00 0.00 44.45 4.55
1867 6171 3.491447 CCTTCTTTCCACCTTTTGCTGTG 60.491 47.826 0.00 0.00 0.00 3.66
1889 6194 4.568359 TGCTTAACGAATCTCTTCTCATGC 59.432 41.667 0.00 0.00 0.00 4.06
1895 6200 6.654793 AGTGAATGCTTAACGAATCTCTTC 57.345 37.500 0.00 0.00 0.00 2.87
1928 6233 4.806775 TCACACATGTATTACGATTTCCGG 59.193 41.667 0.00 0.00 43.93 5.14
1930 6235 8.822855 TGTATTCACACATGTATTACGATTTCC 58.177 33.333 0.00 0.00 0.00 3.13
1935 6240 9.673454 GTCTATGTATTCACACATGTATTACGA 57.327 33.333 0.00 0.00 39.46 3.43
1936 6241 8.912658 GGTCTATGTATTCACACATGTATTACG 58.087 37.037 0.00 0.00 39.46 3.18
1937 6242 9.758651 TGGTCTATGTATTCACACATGTATTAC 57.241 33.333 0.00 0.00 39.46 1.89
1938 6243 9.758651 GTGGTCTATGTATTCACACATGTATTA 57.241 33.333 0.00 0.00 39.46 0.98
1939 6244 8.264347 TGTGGTCTATGTATTCACACATGTATT 58.736 33.333 0.00 0.00 39.46 1.89
1940 6245 7.791029 TGTGGTCTATGTATTCACACATGTAT 58.209 34.615 0.00 0.00 39.46 2.29
1941 6246 7.176589 TGTGGTCTATGTATTCACACATGTA 57.823 36.000 0.00 0.00 39.46 2.29
1942 6247 6.048732 TGTGGTCTATGTATTCACACATGT 57.951 37.500 0.00 0.00 39.46 3.21
1943 6248 6.183360 GGTTGTGGTCTATGTATTCACACATG 60.183 42.308 0.00 0.00 39.46 3.21
1944 6249 5.880332 GGTTGTGGTCTATGTATTCACACAT 59.120 40.000 0.00 0.00 41.88 3.21
1945 6250 5.012664 AGGTTGTGGTCTATGTATTCACACA 59.987 40.000 0.00 0.00 37.96 3.72
1946 6251 5.351465 CAGGTTGTGGTCTATGTATTCACAC 59.649 44.000 0.00 0.00 37.96 3.82
1947 6252 5.012664 ACAGGTTGTGGTCTATGTATTCACA 59.987 40.000 0.00 0.00 39.52 3.58
1948 6253 5.488341 ACAGGTTGTGGTCTATGTATTCAC 58.512 41.667 0.00 0.00 0.00 3.18
1949 6254 5.338056 GGACAGGTTGTGGTCTATGTATTCA 60.338 44.000 0.00 0.00 34.49 2.57
1950 6255 5.116882 GGACAGGTTGTGGTCTATGTATTC 58.883 45.833 0.00 0.00 34.49 1.75
1951 6256 4.080526 GGGACAGGTTGTGGTCTATGTATT 60.081 45.833 0.00 0.00 34.49 1.89
1952 6257 3.454812 GGGACAGGTTGTGGTCTATGTAT 59.545 47.826 0.00 0.00 34.49 2.29
1953 6258 2.835764 GGGACAGGTTGTGGTCTATGTA 59.164 50.000 0.00 0.00 34.49 2.29
1954 6259 1.628846 GGGACAGGTTGTGGTCTATGT 59.371 52.381 0.00 0.00 34.49 2.29
1955 6260 1.909302 AGGGACAGGTTGTGGTCTATG 59.091 52.381 0.00 0.00 34.49 2.23
1956 6261 2.344093 AGGGACAGGTTGTGGTCTAT 57.656 50.000 0.00 0.00 34.49 1.98
1957 6262 2.111255 ACTAGGGACAGGTTGTGGTCTA 59.889 50.000 0.00 0.00 34.49 2.59
1958 6263 1.132817 ACTAGGGACAGGTTGTGGTCT 60.133 52.381 0.00 0.00 34.49 3.85
1959 6264 1.349067 ACTAGGGACAGGTTGTGGTC 58.651 55.000 0.00 0.00 0.00 4.02
1960 6265 2.708037 TACTAGGGACAGGTTGTGGT 57.292 50.000 0.00 0.00 0.00 4.16
1961 6266 2.354805 GCTTACTAGGGACAGGTTGTGG 60.355 54.545 0.00 0.00 0.00 4.17
1962 6267 2.354805 GGCTTACTAGGGACAGGTTGTG 60.355 54.545 0.00 0.00 0.00 3.33
1963 6268 1.907255 GGCTTACTAGGGACAGGTTGT 59.093 52.381 0.00 0.00 0.00 3.32
1964 6269 2.168728 GAGGCTTACTAGGGACAGGTTG 59.831 54.545 0.00 0.00 0.00 3.77
1965 6270 2.044630 AGAGGCTTACTAGGGACAGGTT 59.955 50.000 0.00 0.00 0.00 3.50
1966 6271 1.646977 AGAGGCTTACTAGGGACAGGT 59.353 52.381 0.00 0.00 0.00 4.00
1967 6272 2.463047 AGAGGCTTACTAGGGACAGG 57.537 55.000 0.00 0.00 0.00 4.00
1968 6273 4.173290 ACTAGAGGCTTACTAGGGACAG 57.827 50.000 13.13 0.00 40.86 3.51
1969 6274 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
1970 6275 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
1971 6276 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
1972 6277 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
1973 6278 6.870971 CTAGTCAACTAGAGGCTTACTAGG 57.129 45.833 11.03 0.00 46.80 3.02
1985 6290 7.251281 TGTTGATCAACGATCTAGTCAACTAG 58.749 38.462 28.55 10.36 43.38 2.57
1986 6291 7.120726 TCTGTTGATCAACGATCTAGTCAACTA 59.879 37.037 28.55 9.16 43.38 2.24
1987 6292 6.025749 TGTTGATCAACGATCTAGTCAACT 57.974 37.500 28.55 0.00 43.38 3.16
1988 6293 6.093404 TCTGTTGATCAACGATCTAGTCAAC 58.907 40.000 28.55 7.02 43.94 3.18
1989 6294 6.267496 TCTGTTGATCAACGATCTAGTCAA 57.733 37.500 28.55 10.18 43.94 3.18
1990 6295 5.897377 TCTGTTGATCAACGATCTAGTCA 57.103 39.130 28.55 10.88 43.94 3.41
1991 6296 7.644490 ACTATCTGTTGATCAACGATCTAGTC 58.356 38.462 30.95 12.35 43.94 2.59
1992 6297 7.283354 TGACTATCTGTTGATCAACGATCTAGT 59.717 37.037 30.95 28.75 43.94 2.57
1993 6298 7.643579 TGACTATCTGTTGATCAACGATCTAG 58.356 38.462 30.95 26.98 43.94 2.43
1994 6299 7.568199 TGACTATCTGTTGATCAACGATCTA 57.432 36.000 30.95 21.23 43.94 1.98
1995 6300 6.456795 TGACTATCTGTTGATCAACGATCT 57.543 37.500 30.95 22.92 43.94 2.75
1996 6301 6.145209 CCATGACTATCTGTTGATCAACGATC 59.855 42.308 30.95 23.61 43.94 3.69
1997 6302 5.987953 CCATGACTATCTGTTGATCAACGAT 59.012 40.000 30.35 30.35 43.94 3.73
1998 6303 5.105351 ACCATGACTATCTGTTGATCAACGA 60.105 40.000 28.55 26.46 43.94 3.85
1999 6304 5.111989 ACCATGACTATCTGTTGATCAACG 58.888 41.667 28.55 23.04 43.94 4.10
2000 6305 6.992063 AACCATGACTATCTGTTGATCAAC 57.008 37.500 28.10 28.10 41.50 3.18
2001 6306 6.599244 GGAAACCATGACTATCTGTTGATCAA 59.401 38.462 3.38 3.38 34.32 2.57
2002 6307 6.070021 AGGAAACCATGACTATCTGTTGATCA 60.070 38.462 0.00 0.00 34.32 2.92
2003 6308 6.259608 CAGGAAACCATGACTATCTGTTGATC 59.740 42.308 0.00 0.00 34.32 2.92
2004 6309 6.070021 TCAGGAAACCATGACTATCTGTTGAT 60.070 38.462 0.00 0.00 36.74 2.57
2005 6310 5.248248 TCAGGAAACCATGACTATCTGTTGA 59.752 40.000 0.00 0.00 0.00 3.18
2006 6311 5.352569 GTCAGGAAACCATGACTATCTGTTG 59.647 44.000 0.00 0.00 42.06 3.33
2007 6312 5.491982 GTCAGGAAACCATGACTATCTGTT 58.508 41.667 0.00 0.00 42.06 3.16
2008 6313 5.091261 GTCAGGAAACCATGACTATCTGT 57.909 43.478 0.00 0.00 42.06 3.41
2015 6320 4.192317 GTCCATAGTCAGGAAACCATGAC 58.808 47.826 0.00 2.44 44.97 3.06
2016 6321 3.843619 TGTCCATAGTCAGGAAACCATGA 59.156 43.478 0.00 0.00 36.80 3.07
2017 6322 4.220693 TGTCCATAGTCAGGAAACCATG 57.779 45.455 0.00 0.00 36.80 3.66
2018 6323 5.195940 CAATGTCCATAGTCAGGAAACCAT 58.804 41.667 0.00 0.00 36.80 3.55
2019 6324 4.567537 CCAATGTCCATAGTCAGGAAACCA 60.568 45.833 0.00 0.00 36.80 3.67
2020 6325 3.947834 CCAATGTCCATAGTCAGGAAACC 59.052 47.826 0.00 0.00 36.80 3.27
2021 6326 4.843728 TCCAATGTCCATAGTCAGGAAAC 58.156 43.478 0.00 0.00 36.80 2.78
2022 6327 5.044919 ACATCCAATGTCCATAGTCAGGAAA 60.045 40.000 0.00 0.00 39.92 3.13
2023 6328 4.474651 ACATCCAATGTCCATAGTCAGGAA 59.525 41.667 0.00 0.00 39.92 3.36
2024 6329 4.040047 ACATCCAATGTCCATAGTCAGGA 58.960 43.478 0.00 0.00 39.92 3.86
2025 6330 4.428294 ACATCCAATGTCCATAGTCAGG 57.572 45.455 0.00 0.00 39.92 3.86
2037 6342 4.821260 TCCCGTTATCAATGACATCCAATG 59.179 41.667 0.00 0.00 0.00 2.82
2038 6343 5.047566 TCCCGTTATCAATGACATCCAAT 57.952 39.130 0.00 0.00 0.00 3.16
2039 6344 4.495690 TCCCGTTATCAATGACATCCAA 57.504 40.909 0.00 0.00 0.00 3.53
2040 6345 4.102367 TGATCCCGTTATCAATGACATCCA 59.898 41.667 0.00 0.00 32.97 3.41
2041 6346 4.452455 GTGATCCCGTTATCAATGACATCC 59.548 45.833 0.00 0.00 37.61 3.51
2042 6347 5.056480 TGTGATCCCGTTATCAATGACATC 58.944 41.667 0.00 0.00 37.61 3.06
2043 6348 5.034852 TGTGATCCCGTTATCAATGACAT 57.965 39.130 0.00 0.00 37.61 3.06
2044 6349 4.479786 TGTGATCCCGTTATCAATGACA 57.520 40.909 0.00 0.00 37.61 3.58
2045 6350 5.056480 TGATGTGATCCCGTTATCAATGAC 58.944 41.667 0.00 0.00 37.61 3.06
2046 6351 5.289083 TGATGTGATCCCGTTATCAATGA 57.711 39.130 0.00 0.00 37.61 2.57
2047 6352 6.564709 AATGATGTGATCCCGTTATCAATG 57.435 37.500 0.00 0.00 37.61 2.82
2048 6353 6.881065 CCTAATGATGTGATCCCGTTATCAAT 59.119 38.462 0.00 0.00 37.61 2.57
2049 6354 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
2050 6355 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
2051 6356 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
2052 6357 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
2053 6358 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
2054 6359 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
2055 6360 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
2056 6361 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
2057 6362 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
2065 6370 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
2066 6371 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
2067 6372 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
2068 6373 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
2069 6374 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
2070 6375 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
2071 6376 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
2072 6377 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
2073 6378 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
2074 6379 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
2075 6380 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
2076 6381 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
2077 6382 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
2078 6383 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
2079 6384 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
2080 6385 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
2081 6386 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
2082 6387 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
2083 6388 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
2084 6389 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
2085 6390 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
2086 6391 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
2087 6392 2.026262 TGCTTAGGATTGGGTCTTGTCC 60.026 50.000 0.00 0.00 0.00 4.02
2088 6393 3.350219 TGCTTAGGATTGGGTCTTGTC 57.650 47.619 0.00 0.00 0.00 3.18
2089 6394 4.687219 GCTATGCTTAGGATTGGGTCTTGT 60.687 45.833 8.57 0.00 0.00 3.16
2090 6395 3.817647 GCTATGCTTAGGATTGGGTCTTG 59.182 47.826 8.57 0.00 0.00 3.02
2091 6396 3.459598 TGCTATGCTTAGGATTGGGTCTT 59.540 43.478 8.57 0.00 0.00 3.01
2092 6397 3.048600 TGCTATGCTTAGGATTGGGTCT 58.951 45.455 8.57 0.00 0.00 3.85
2093 6398 3.492102 TGCTATGCTTAGGATTGGGTC 57.508 47.619 8.57 0.00 0.00 4.46
2094 6399 5.582950 TTATGCTATGCTTAGGATTGGGT 57.417 39.130 16.94 0.00 37.61 4.51
2095 6400 6.716628 TCTTTTATGCTATGCTTAGGATTGGG 59.283 38.462 16.94 7.48 37.61 4.12
2096 6401 7.750229 TCTTTTATGCTATGCTTAGGATTGG 57.250 36.000 16.94 7.21 37.61 3.16
2097 6402 8.173775 CGATCTTTTATGCTATGCTTAGGATTG 58.826 37.037 16.94 6.01 37.61 2.67
2098 6403 7.880195 ACGATCTTTTATGCTATGCTTAGGATT 59.120 33.333 16.94 0.62 37.61 3.01
2099 6404 7.332926 CACGATCTTTTATGCTATGCTTAGGAT 59.667 37.037 16.16 16.16 39.53 3.24
2100 6405 6.646653 CACGATCTTTTATGCTATGCTTAGGA 59.353 38.462 8.57 6.06 0.00 2.94
2101 6406 6.425114 ACACGATCTTTTATGCTATGCTTAGG 59.575 38.462 8.57 0.00 0.00 2.69
2102 6407 7.413475 ACACGATCTTTTATGCTATGCTTAG 57.587 36.000 2.28 2.28 0.00 2.18
2103 6408 8.141909 ACTACACGATCTTTTATGCTATGCTTA 58.858 33.333 0.00 0.00 0.00 3.09
2104 6409 6.986817 ACTACACGATCTTTTATGCTATGCTT 59.013 34.615 0.00 0.00 0.00 3.91
2105 6410 6.516718 ACTACACGATCTTTTATGCTATGCT 58.483 36.000 0.00 0.00 0.00 3.79
2106 6411 6.771188 ACTACACGATCTTTTATGCTATGC 57.229 37.500 0.00 0.00 0.00 3.14
2107 6412 7.998767 CGAAACTACACGATCTTTTATGCTATG 59.001 37.037 0.00 0.00 0.00 2.23
2108 6413 7.705325 ACGAAACTACACGATCTTTTATGCTAT 59.295 33.333 0.00 0.00 0.00 2.97
2109 6414 7.031372 ACGAAACTACACGATCTTTTATGCTA 58.969 34.615 0.00 0.00 0.00 3.49
2110 6415 5.867716 ACGAAACTACACGATCTTTTATGCT 59.132 36.000 0.00 0.00 0.00 3.79
2111 6416 6.091123 ACGAAACTACACGATCTTTTATGC 57.909 37.500 0.00 0.00 0.00 3.14
2112 6417 7.006210 GCAAACGAAACTACACGATCTTTTATG 59.994 37.037 0.00 0.00 0.00 1.90
2113 6418 7.013529 GCAAACGAAACTACACGATCTTTTAT 58.986 34.615 0.00 0.00 0.00 1.40
2114 6419 6.201425 AGCAAACGAAACTACACGATCTTTTA 59.799 34.615 0.00 0.00 0.00 1.52
2115 6420 5.007332 AGCAAACGAAACTACACGATCTTTT 59.993 36.000 0.00 0.00 0.00 2.27
2116 6421 4.510340 AGCAAACGAAACTACACGATCTTT 59.490 37.500 0.00 0.00 0.00 2.52
2117 6422 4.056050 AGCAAACGAAACTACACGATCTT 58.944 39.130 0.00 0.00 0.00 2.40
2118 6423 3.650139 AGCAAACGAAACTACACGATCT 58.350 40.909 0.00 0.00 0.00 2.75
2119 6424 4.855388 TCTAGCAAACGAAACTACACGATC 59.145 41.667 0.00 0.00 0.00 3.69
2120 6425 4.801891 TCTAGCAAACGAAACTACACGAT 58.198 39.130 0.00 0.00 0.00 3.73
2121 6426 4.224433 CTCTAGCAAACGAAACTACACGA 58.776 43.478 0.00 0.00 0.00 4.35
2122 6427 3.181543 GCTCTAGCAAACGAAACTACACG 60.182 47.826 0.00 0.00 41.59 4.49
2123 6428 3.988517 AGCTCTAGCAAACGAAACTACAC 59.011 43.478 4.54 0.00 45.16 2.90
2124 6429 4.252971 AGCTCTAGCAAACGAAACTACA 57.747 40.909 4.54 0.00 45.16 2.74
2125 6430 5.593183 AAAGCTCTAGCAAACGAAACTAC 57.407 39.130 4.54 0.00 45.16 2.73
2126 6431 5.178809 GGAAAAGCTCTAGCAAACGAAACTA 59.821 40.000 4.54 0.00 45.16 2.24
2127 6432 4.023963 GGAAAAGCTCTAGCAAACGAAACT 60.024 41.667 4.54 0.00 45.16 2.66
2128 6433 4.219802 GGAAAAGCTCTAGCAAACGAAAC 58.780 43.478 4.54 0.00 45.16 2.78
2129 6434 3.880490 TGGAAAAGCTCTAGCAAACGAAA 59.120 39.130 4.54 0.00 45.16 3.46
2130 6435 3.472652 TGGAAAAGCTCTAGCAAACGAA 58.527 40.909 4.54 0.00 45.16 3.85
2131 6436 3.120321 TGGAAAAGCTCTAGCAAACGA 57.880 42.857 4.54 0.00 45.16 3.85
2132 6437 3.896648 TTGGAAAAGCTCTAGCAAACG 57.103 42.857 4.54 0.00 45.16 3.60
2133 6438 5.126396 ACATTGGAAAAGCTCTAGCAAAC 57.874 39.130 4.54 0.00 45.16 2.93
2134 6439 4.826733 TGACATTGGAAAAGCTCTAGCAAA 59.173 37.500 4.54 0.00 45.16 3.68
2135 6440 4.397420 TGACATTGGAAAAGCTCTAGCAA 58.603 39.130 4.54 0.00 45.16 3.91
2136 6441 4.019792 TGACATTGGAAAAGCTCTAGCA 57.980 40.909 4.54 0.00 45.16 3.49
2137 6442 4.457257 ACTTGACATTGGAAAAGCTCTAGC 59.543 41.667 0.00 0.00 42.49 3.42
2138 6443 7.768120 AGATACTTGACATTGGAAAAGCTCTAG 59.232 37.037 0.00 0.00 0.00 2.43
2139 6444 7.624549 AGATACTTGACATTGGAAAAGCTCTA 58.375 34.615 0.00 0.00 0.00 2.43
2140 6445 6.479884 AGATACTTGACATTGGAAAAGCTCT 58.520 36.000 0.00 0.00 0.00 4.09
2141 6446 6.749923 AGATACTTGACATTGGAAAAGCTC 57.250 37.500 0.00 0.00 0.00 4.09
2142 6447 7.530426 AAAGATACTTGACATTGGAAAAGCT 57.470 32.000 0.00 0.00 0.00 3.74
2143 6448 7.329471 GGAAAAGATACTTGACATTGGAAAAGC 59.671 37.037 0.00 0.00 0.00 3.51
2144 6449 8.579863 AGGAAAAGATACTTGACATTGGAAAAG 58.420 33.333 0.00 0.00 0.00 2.27
2145 6450 8.477419 AGGAAAAGATACTTGACATTGGAAAA 57.523 30.769 0.00 0.00 0.00 2.29
2146 6451 8.477419 AAGGAAAAGATACTTGACATTGGAAA 57.523 30.769 0.00 0.00 0.00 3.13
2147 6452 9.231297 CTAAGGAAAAGATACTTGACATTGGAA 57.769 33.333 0.00 0.00 0.00 3.53
2148 6453 8.602424 TCTAAGGAAAAGATACTTGACATTGGA 58.398 33.333 0.00 0.00 0.00 3.53
2149 6454 8.669243 GTCTAAGGAAAAGATACTTGACATTGG 58.331 37.037 0.00 0.00 0.00 3.16
2150 6455 8.669243 GGTCTAAGGAAAAGATACTTGACATTG 58.331 37.037 0.00 0.00 30.76 2.82
2151 6456 8.383175 TGGTCTAAGGAAAAGATACTTGACATT 58.617 33.333 0.00 0.00 30.76 2.71
2152 6457 7.918076 TGGTCTAAGGAAAAGATACTTGACAT 58.082 34.615 0.00 0.00 30.76 3.06
2153 6458 7.311092 TGGTCTAAGGAAAAGATACTTGACA 57.689 36.000 0.00 0.00 30.76 3.58
2154 6459 8.041323 TCATGGTCTAAGGAAAAGATACTTGAC 58.959 37.037 0.00 0.00 0.00 3.18
2155 6460 8.146053 TCATGGTCTAAGGAAAAGATACTTGA 57.854 34.615 0.00 0.00 0.00 3.02
2156 6461 8.260818 TCTCATGGTCTAAGGAAAAGATACTTG 58.739 37.037 0.00 0.00 0.00 3.16
2157 6462 8.380742 TCTCATGGTCTAAGGAAAAGATACTT 57.619 34.615 0.00 0.00 0.00 2.24
2158 6463 7.979786 TCTCATGGTCTAAGGAAAAGATACT 57.020 36.000 0.00 0.00 0.00 2.12
2159 6464 7.596995 CGATCTCATGGTCTAAGGAAAAGATAC 59.403 40.741 0.00 0.00 0.00 2.24
2160 6465 7.287927 ACGATCTCATGGTCTAAGGAAAAGATA 59.712 37.037 0.00 0.00 0.00 1.98
2161 6466 6.098982 ACGATCTCATGGTCTAAGGAAAAGAT 59.901 38.462 0.00 0.00 0.00 2.40
2162 6467 5.422331 ACGATCTCATGGTCTAAGGAAAAGA 59.578 40.000 0.00 0.00 0.00 2.52
2163 6468 5.521735 CACGATCTCATGGTCTAAGGAAAAG 59.478 44.000 0.00 0.00 0.00 2.27
2164 6469 5.419542 CACGATCTCATGGTCTAAGGAAAA 58.580 41.667 0.00 0.00 0.00 2.29
2165 6470 4.680708 GCACGATCTCATGGTCTAAGGAAA 60.681 45.833 0.00 0.00 0.00 3.13
2166 6471 3.181475 GCACGATCTCATGGTCTAAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
2167 6472 2.362397 GCACGATCTCATGGTCTAAGGA 59.638 50.000 0.00 0.00 0.00 3.36
2168 6473 2.101415 TGCACGATCTCATGGTCTAAGG 59.899 50.000 0.00 0.00 0.00 2.69
2169 6474 3.443099 TGCACGATCTCATGGTCTAAG 57.557 47.619 0.00 0.00 0.00 2.18
2170 6475 3.195610 AGTTGCACGATCTCATGGTCTAA 59.804 43.478 0.00 0.00 0.00 2.10
2171 6476 2.760650 AGTTGCACGATCTCATGGTCTA 59.239 45.455 0.00 0.00 0.00 2.59
2172 6477 1.552337 AGTTGCACGATCTCATGGTCT 59.448 47.619 0.00 0.00 0.00 3.85
2173 6478 1.929836 GAGTTGCACGATCTCATGGTC 59.070 52.381 0.00 0.00 0.00 4.02
2174 6479 1.406069 GGAGTTGCACGATCTCATGGT 60.406 52.381 0.00 0.00 0.00 3.55
2175 6480 1.293924 GGAGTTGCACGATCTCATGG 58.706 55.000 0.00 0.00 0.00 3.66
2176 6481 1.293924 GGGAGTTGCACGATCTCATG 58.706 55.000 0.00 0.00 0.00 3.07
2177 6482 3.768633 GGGAGTTGCACGATCTCAT 57.231 52.632 0.00 0.00 0.00 2.90
2184 6489 1.520787 GGTATCCGGGAGTTGCACG 60.521 63.158 0.00 0.00 44.93 5.34
2185 6490 1.520787 CGGTATCCGGGAGTTGCAC 60.521 63.158 0.00 0.00 44.15 4.57
2186 6491 2.897207 CGGTATCCGGGAGTTGCA 59.103 61.111 0.00 0.00 44.15 4.08
2196 6501 2.167900 ACAAAGCACTCCTACGGTATCC 59.832 50.000 0.00 0.00 0.00 2.59
2197 6502 3.187700 CACAAAGCACTCCTACGGTATC 58.812 50.000 0.00 0.00 0.00 2.24
2198 6503 2.565834 ACACAAAGCACTCCTACGGTAT 59.434 45.455 0.00 0.00 0.00 2.73
2199 6504 1.965643 ACACAAAGCACTCCTACGGTA 59.034 47.619 0.00 0.00 0.00 4.02
2200 6505 0.756903 ACACAAAGCACTCCTACGGT 59.243 50.000 0.00 0.00 0.00 4.83
2201 6506 1.148310 CACACAAAGCACTCCTACGG 58.852 55.000 0.00 0.00 0.00 4.02
2202 6507 1.526887 CACACACAAAGCACTCCTACG 59.473 52.381 0.00 0.00 0.00 3.51
2203 6508 1.264288 GCACACACAAAGCACTCCTAC 59.736 52.381 0.00 0.00 0.00 3.18
2204 6509 1.593196 GCACACACAAAGCACTCCTA 58.407 50.000 0.00 0.00 0.00 2.94
2205 6510 1.103398 GGCACACACAAAGCACTCCT 61.103 55.000 0.00 0.00 0.00 3.69
2206 6511 1.360192 GGCACACACAAAGCACTCC 59.640 57.895 0.00 0.00 0.00 3.85
2207 6512 0.455410 TTGGCACACACAAAGCACTC 59.545 50.000 0.00 0.00 39.29 3.51
2208 6513 0.894141 TTTGGCACACACAAAGCACT 59.106 45.000 0.00 0.00 39.29 4.40
2209 6514 0.998669 GTTTGGCACACACAAAGCAC 59.001 50.000 0.00 0.00 39.11 4.40
2210 6515 0.457509 CGTTTGGCACACACAAAGCA 60.458 50.000 4.48 0.00 39.27 3.91
2211 6516 0.457681 ACGTTTGGCACACACAAAGC 60.458 50.000 4.48 0.00 39.27 3.51
2212 6517 1.135546 TGACGTTTGGCACACACAAAG 60.136 47.619 4.48 0.00 39.27 2.77
2213 6518 0.881796 TGACGTTTGGCACACACAAA 59.118 45.000 4.48 0.00 39.27 2.83
2214 6519 0.169230 GTGACGTTTGGCACACACAA 59.831 50.000 4.48 0.00 39.27 3.33
2215 6520 0.955919 TGTGACGTTTGGCACACACA 60.956 50.000 0.00 1.38 39.27 3.72
2216 6521 0.169230 TTGTGACGTTTGGCACACAC 59.831 50.000 2.92 0.45 43.97 3.82
2217 6522 0.169230 GTTGTGACGTTTGGCACACA 59.831 50.000 2.92 4.50 43.97 3.72
2218 6523 0.859788 CGTTGTGACGTTTGGCACAC 60.860 55.000 2.92 1.86 43.97 3.82
2219 6524 1.425825 CGTTGTGACGTTTGGCACA 59.574 52.632 0.00 0.00 44.08 4.57
2220 6525 4.278609 CGTTGTGACGTTTGGCAC 57.721 55.556 0.00 0.00 44.08 5.01
2229 6534 1.862827 GTCACCCAGTTACGTTGTGAC 59.137 52.381 14.61 14.61 46.02 3.67
2230 6535 1.758280 AGTCACCCAGTTACGTTGTGA 59.242 47.619 0.00 0.00 33.83 3.58
2231 6536 2.234300 AGTCACCCAGTTACGTTGTG 57.766 50.000 0.00 0.00 0.00 3.33
2232 6537 5.726980 TTATAGTCACCCAGTTACGTTGT 57.273 39.130 0.00 0.00 0.00 3.32
2233 6538 5.579511 CCTTTATAGTCACCCAGTTACGTTG 59.420 44.000 0.00 0.00 0.00 4.10
2234 6539 5.246883 ACCTTTATAGTCACCCAGTTACGTT 59.753 40.000 0.00 0.00 0.00 3.99
2235 6540 4.774200 ACCTTTATAGTCACCCAGTTACGT 59.226 41.667 0.00 0.00 0.00 3.57
2236 6541 5.107133 CACCTTTATAGTCACCCAGTTACG 58.893 45.833 0.00 0.00 0.00 3.18
2237 6542 4.874396 GCACCTTTATAGTCACCCAGTTAC 59.126 45.833 0.00 0.00 0.00 2.50
2238 6543 4.532916 TGCACCTTTATAGTCACCCAGTTA 59.467 41.667 0.00 0.00 0.00 2.24
2239 6544 3.329520 TGCACCTTTATAGTCACCCAGTT 59.670 43.478 0.00 0.00 0.00 3.16
2240 6545 2.910319 TGCACCTTTATAGTCACCCAGT 59.090 45.455 0.00 0.00 0.00 4.00
2241 6546 3.627395 TGCACCTTTATAGTCACCCAG 57.373 47.619 0.00 0.00 0.00 4.45
2242 6547 4.584638 AATGCACCTTTATAGTCACCCA 57.415 40.909 0.00 0.00 0.00 4.51
2243 6548 4.510340 CGTAATGCACCTTTATAGTCACCC 59.490 45.833 0.00 0.00 0.00 4.61
2244 6549 4.510340 CCGTAATGCACCTTTATAGTCACC 59.490 45.833 0.00 0.00 0.00 4.02
2245 6550 4.510340 CCCGTAATGCACCTTTATAGTCAC 59.490 45.833 0.00 0.00 0.00 3.67
2246 6551 4.162698 ACCCGTAATGCACCTTTATAGTCA 59.837 41.667 0.00 0.00 0.00 3.41
2247 6552 4.700700 ACCCGTAATGCACCTTTATAGTC 58.299 43.478 0.00 0.00 0.00 2.59
2248 6553 4.765813 ACCCGTAATGCACCTTTATAGT 57.234 40.909 0.00 0.00 0.00 2.12
2249 6554 6.698380 AGATACCCGTAATGCACCTTTATAG 58.302 40.000 0.00 0.00 0.00 1.31
2250 6555 6.295462 GGAGATACCCGTAATGCACCTTTATA 60.295 42.308 0.00 0.00 0.00 0.98
2251 6556 5.512576 GGAGATACCCGTAATGCACCTTTAT 60.513 44.000 0.00 0.00 0.00 1.40
2252 6557 4.202284 GGAGATACCCGTAATGCACCTTTA 60.202 45.833 0.00 0.00 0.00 1.85
2253 6558 3.433173 GGAGATACCCGTAATGCACCTTT 60.433 47.826 0.00 0.00 0.00 3.11
2254 6559 2.104281 GGAGATACCCGTAATGCACCTT 59.896 50.000 0.00 0.00 0.00 3.50
2255 6560 1.692519 GGAGATACCCGTAATGCACCT 59.307 52.381 0.00 0.00 0.00 4.00
2256 6561 1.604693 CGGAGATACCCGTAATGCACC 60.605 57.143 0.00 0.00 44.23 5.01
2257 6562 1.779569 CGGAGATACCCGTAATGCAC 58.220 55.000 0.00 0.00 44.23 4.57
2266 6571 2.496470 ACAGACACTTTCGGAGATACCC 59.504 50.000 0.00 0.00 35.04 3.69
2267 6572 3.870633 ACAGACACTTTCGGAGATACC 57.129 47.619 0.00 0.00 35.04 2.73
2268 6573 3.927142 CCAACAGACACTTTCGGAGATAC 59.073 47.826 0.00 0.00 35.04 2.24
2269 6574 4.188247 CCAACAGACACTTTCGGAGATA 57.812 45.455 0.00 0.00 35.04 1.98
2270 6575 3.045601 CCAACAGACACTTTCGGAGAT 57.954 47.619 0.00 0.00 35.04 2.75
2271 6576 2.526304 CCAACAGACACTTTCGGAGA 57.474 50.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.