Multiple sequence alignment - TraesCS2D01G454600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G454600 chr2D 100.000 2294 0 0 1 2294 562849821 562852114 0.000000e+00 4237.0
1 TraesCS2D01G454600 chr2D 81.955 665 78 26 956 1607 563008933 563009568 2.020000e-145 525.0
2 TraesCS2D01G454600 chr2D 85.687 531 37 19 956 1452 562859059 562859584 7.260000e-145 523.0
3 TraesCS2D01G454600 chr2D 84.302 516 61 12 790 1299 562684806 562685307 9.530000e-134 486.0
4 TraesCS2D01G454600 chr2D 81.783 516 81 9 789 1299 562753890 562754397 9.800000e-114 420.0
5 TraesCS2D01G454600 chr2D 85.542 166 23 1 45 209 562785112 562785277 3.030000e-39 172.0
6 TraesCS2D01G454600 chr2D 83.146 178 29 1 45 221 562734663 562734840 6.560000e-36 161.0
7 TraesCS2D01G454600 chr2D 90.654 107 9 1 1690 1796 562851347 562851452 8.540000e-30 141.0
8 TraesCS2D01G454600 chr2D 90.654 107 9 1 1527 1632 562851510 562851616 8.540000e-30 141.0
9 TraesCS2D01G454600 chr2D 83.333 102 7 2 48 148 562839226 562839318 4.060000e-13 86.1
10 TraesCS2D01G454600 chr2D 84.848 66 6 1 58 123 562844853 562844914 1.900000e-06 63.9
11 TraesCS2D01G454600 chr2B 88.361 1263 61 22 429 1641 673170131 673171357 0.000000e+00 1439.0
12 TraesCS2D01G454600 chr2B 88.361 610 39 17 1690 2294 673171239 673171821 0.000000e+00 704.0
13 TraesCS2D01G454600 chr2B 80.848 684 76 29 849 1492 673241783 673242451 9.530000e-134 486.0
14 TraesCS2D01G454600 chr2B 83.181 547 56 17 777 1293 673003468 673004008 3.450000e-128 468.0
15 TraesCS2D01G454600 chr2B 83.364 535 50 18 951 1452 673227608 673228136 2.080000e-125 459.0
16 TraesCS2D01G454600 chr2B 80.531 565 54 20 777 1299 672797177 672796627 1.290000e-102 383.0
17 TraesCS2D01G454600 chr2B 80.748 535 64 24 789 1299 673050720 673051239 4.620000e-102 381.0
18 TraesCS2D01G454600 chr2B 84.595 383 49 7 917 1293 672668591 672668969 2.780000e-99 372.0
19 TraesCS2D01G454600 chr2B 88.106 227 19 1 80 298 673169852 673170078 1.750000e-66 263.0
20 TraesCS2D01G454600 chr2B 84.348 230 31 3 45 273 672797642 672797417 1.070000e-53 220.0
21 TraesCS2D01G454600 chr2B 82.873 181 21 2 38 217 673050392 673050563 1.100000e-33 154.0
22 TraesCS2D01G454600 chr2B 81.183 186 17 11 1850 2035 673228504 673228671 1.430000e-27 134.0
23 TraesCS2D01G454600 chr2B 91.250 80 2 2 2 80 673169114 673169189 1.120000e-18 104.0
24 TraesCS2D01G454600 chr2B 92.754 69 5 0 2169 2237 673243071 673243139 1.450000e-17 100.0
25 TraesCS2D01G454600 chr2A 90.654 963 42 12 777 1698 703353569 703354524 0.000000e+00 1236.0
26 TraesCS2D01G454600 chr2A 85.943 562 40 17 956 1484 703381983 703382538 4.280000e-157 564.0
27 TraesCS2D01G454600 chr2A 79.030 825 89 45 849 1607 703402821 703403627 2.650000e-134 488.0
28 TraesCS2D01G454600 chr2A 78.580 803 93 41 848 1619 703448076 703448830 7.470000e-125 457.0
29 TraesCS2D01G454600 chr2A 80.449 624 56 21 1027 1607 703400268 703400868 1.270000e-112 416.0
30 TraesCS2D01G454600 chr2A 87.812 320 25 6 1 309 703349841 703350157 1.680000e-96 363.0
31 TraesCS2D01G454600 chr2A 83.946 299 19 8 469 763 703353099 703353372 2.260000e-65 259.0
32 TraesCS2D01G454600 chr2A 82.041 245 30 9 46 288 703122420 703122652 1.800000e-46 196.0
33 TraesCS2D01G454600 chr2A 94.872 117 6 0 351 467 703350154 703350270 1.400000e-42 183.0
34 TraesCS2D01G454600 chr2A 86.207 116 15 1 1690 1804 703354354 703354469 8.600000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G454600 chr2D 562849821 562852114 2293 False 1506.333333 4237 93.769333 1 2294 3 chr2D.!!$F9 2293
1 TraesCS2D01G454600 chr2D 563008933 563009568 635 False 525.000000 525 81.955000 956 1607 1 chr2D.!!$F8 651
2 TraesCS2D01G454600 chr2D 562859059 562859584 525 False 523.000000 523 85.687000 956 1452 1 chr2D.!!$F7 496
3 TraesCS2D01G454600 chr2D 562684806 562685307 501 False 486.000000 486 84.302000 790 1299 1 chr2D.!!$F1 509
4 TraesCS2D01G454600 chr2D 562753890 562754397 507 False 420.000000 420 81.783000 789 1299 1 chr2D.!!$F3 510
5 TraesCS2D01G454600 chr2B 673169114 673171821 2707 False 627.500000 1439 89.019500 2 2294 4 chr2B.!!$F4 2292
6 TraesCS2D01G454600 chr2B 673003468 673004008 540 False 468.000000 468 83.181000 777 1293 1 chr2B.!!$F2 516
7 TraesCS2D01G454600 chr2B 672796627 672797642 1015 True 301.500000 383 82.439500 45 1299 2 chr2B.!!$R1 1254
8 TraesCS2D01G454600 chr2B 673227608 673228671 1063 False 296.500000 459 82.273500 951 2035 2 chr2B.!!$F5 1084
9 TraesCS2D01G454600 chr2B 673241783 673243139 1356 False 293.000000 486 86.801000 849 2237 2 chr2B.!!$F6 1388
10 TraesCS2D01G454600 chr2B 673050392 673051239 847 False 267.500000 381 81.810500 38 1299 2 chr2B.!!$F3 1261
11 TraesCS2D01G454600 chr2A 703381983 703382538 555 False 564.000000 564 85.943000 956 1484 1 chr2A.!!$F2 528
12 TraesCS2D01G454600 chr2A 703448076 703448830 754 False 457.000000 457 78.580000 848 1619 1 chr2A.!!$F3 771
13 TraesCS2D01G454600 chr2A 703400268 703403627 3359 False 452.000000 488 79.739500 849 1607 2 chr2A.!!$F5 758
14 TraesCS2D01G454600 chr2A 703349841 703354524 4683 False 433.000000 1236 88.698200 1 1804 5 chr2A.!!$F4 1803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 787 0.108804 ACCTGTCTCGTATGTTGGCG 60.109 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 8355 0.173708 GGAGTACTTGTCTGGCGAGG 59.826 60.0 0.0 0.0 32.77 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 756 1.993370 GTCTATTATTAGCGCGGCCAG 59.007 52.381 8.83 0.00 0.00 4.85
123 787 0.108804 ACCTGTCTCGTATGTTGGCG 60.109 55.000 0.00 0.00 0.00 5.69
179 847 6.431234 AGCATTAGCACTAGTTTAAGCAAAGT 59.569 34.615 5.79 0.00 45.49 2.66
246 914 2.423660 CCCAAGTCTCCGACTAGAGGAT 60.424 54.545 11.09 0.00 42.59 3.24
275 951 6.572621 CGACGAATTCTTCTGCAATGATTATG 59.427 38.462 9.94 0.00 0.00 1.90
281 957 2.221169 TCTGCAATGATTATGGACGCC 58.779 47.619 0.00 0.00 0.00 5.68
292 968 4.955811 TTATGGACGCCAATACTGATCT 57.044 40.909 2.68 0.00 36.95 2.75
305 981 6.276847 CAATACTGATCTACTCCGCTCTTTT 58.723 40.000 0.00 0.00 0.00 2.27
310 986 0.723981 CTACTCCGCTCTTTTGCTGC 59.276 55.000 0.00 0.00 0.00 5.25
312 988 1.673665 CTCCGCTCTTTTGCTGCCT 60.674 57.895 0.00 0.00 0.00 4.75
313 989 1.228245 TCCGCTCTTTTGCTGCCTT 60.228 52.632 0.00 0.00 0.00 4.35
314 990 1.080974 CCGCTCTTTTGCTGCCTTG 60.081 57.895 0.00 0.00 0.00 3.61
315 991 1.518056 CCGCTCTTTTGCTGCCTTGA 61.518 55.000 0.00 0.00 0.00 3.02
316 992 0.109873 CGCTCTTTTGCTGCCTTGAG 60.110 55.000 0.00 1.15 0.00 3.02
317 993 0.957362 GCTCTTTTGCTGCCTTGAGT 59.043 50.000 0.00 0.00 0.00 3.41
318 994 2.154462 GCTCTTTTGCTGCCTTGAGTA 58.846 47.619 0.00 0.00 0.00 2.59
319 995 2.751806 GCTCTTTTGCTGCCTTGAGTAT 59.248 45.455 0.00 0.00 0.00 2.12
320 996 3.192212 GCTCTTTTGCTGCCTTGAGTATT 59.808 43.478 0.00 0.00 0.00 1.89
321 997 4.730657 CTCTTTTGCTGCCTTGAGTATTG 58.269 43.478 0.00 0.00 0.00 1.90
322 998 4.397420 TCTTTTGCTGCCTTGAGTATTGA 58.603 39.130 0.00 0.00 0.00 2.57
323 999 4.216257 TCTTTTGCTGCCTTGAGTATTGAC 59.784 41.667 0.00 0.00 0.00 3.18
324 1000 1.725641 TGCTGCCTTGAGTATTGACG 58.274 50.000 0.00 0.00 0.00 4.35
325 1001 1.001974 TGCTGCCTTGAGTATTGACGT 59.998 47.619 0.00 0.00 0.00 4.34
326 1002 2.076863 GCTGCCTTGAGTATTGACGTT 58.923 47.619 0.00 0.00 0.00 3.99
327 1003 2.484264 GCTGCCTTGAGTATTGACGTTT 59.516 45.455 0.00 0.00 0.00 3.60
328 1004 3.424962 GCTGCCTTGAGTATTGACGTTTC 60.425 47.826 0.00 0.00 0.00 2.78
329 1005 3.071479 TGCCTTGAGTATTGACGTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
330 1006 2.093783 GCCTTGAGTATTGACGTTTCCG 59.906 50.000 0.00 0.00 40.83 4.30
331 1007 3.581755 CCTTGAGTATTGACGTTTCCGA 58.418 45.455 0.00 0.00 37.88 4.55
332 1008 3.991773 CCTTGAGTATTGACGTTTCCGAA 59.008 43.478 0.00 0.00 37.88 4.30
333 1009 4.091509 CCTTGAGTATTGACGTTTCCGAAG 59.908 45.833 0.00 0.00 37.88 3.79
349 1025 3.014604 CGAAGGACGATATGGTTCTCC 57.985 52.381 0.00 0.00 45.77 3.71
378 1054 9.367444 CTAGTACAGACTGACGGATTTTAAATT 57.633 33.333 10.08 0.00 36.28 1.82
395 1071 4.946784 AAATTGGCTGTAGAATGACGAC 57.053 40.909 0.00 0.00 0.00 4.34
427 1103 4.835615 ACCTCTGTCTTCTCTCAGCTTTTA 59.164 41.667 0.00 0.00 0.00 1.52
440 1116 5.587043 TCTCAGCTTTTAAAAACCGAGTTGA 59.413 36.000 12.18 8.22 0.00 3.18
467 1143 7.591426 ACAACATTACAAAAGCTTCTCGAATTC 59.409 33.333 0.00 0.00 0.00 2.17
474 3976 5.363979 AAAGCTTCTCGAATTCAGGAAAC 57.636 39.130 0.00 4.78 0.00 2.78
504 4007 5.027293 ACAAACCTTGTTACCGACTTACT 57.973 39.130 0.00 0.00 42.22 2.24
505 4008 6.160576 ACAAACCTTGTTACCGACTTACTA 57.839 37.500 0.00 0.00 42.22 1.82
506 4009 5.985530 ACAAACCTTGTTACCGACTTACTAC 59.014 40.000 0.00 0.00 42.22 2.73
513 4016 7.307573 CCTTGTTACCGACTTACTACCTTTTTG 60.308 40.741 0.00 0.00 0.00 2.44
560 4093 2.158740 TGGATCAACAGGGACGTTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
561 4094 2.484264 GGATCAACAGGGACGTTCAAAG 59.516 50.000 0.00 0.00 0.00 2.77
562 4095 1.961793 TCAACAGGGACGTTCAAAGG 58.038 50.000 0.00 0.00 0.00 3.11
610 4143 0.733729 CCTAGGTCGACCTCTTCACG 59.266 60.000 39.49 20.30 44.77 4.35
623 4156 1.626654 CTTCACGGACATGGCACGAC 61.627 60.000 15.16 0.00 0.00 4.34
763 4299 0.112412 CCAATACCCATGGCTACCCC 59.888 60.000 6.09 0.00 0.00 4.95
913 4690 2.046285 CCCACCCAACTCATTCGCC 61.046 63.158 0.00 0.00 0.00 5.54
935 4712 2.028996 GCTCTCCTCTTCCTCCCTCTG 61.029 61.905 0.00 0.00 0.00 3.35
1406 8020 2.677337 GCAGTGAAGGATCTGAGAAAGC 59.323 50.000 0.00 0.00 34.02 3.51
1527 8221 0.165079 CGGTTGTCGCAACACCATAC 59.835 55.000 19.45 5.26 34.35 2.39
1528 8222 0.519961 GGTTGTCGCAACACCATACC 59.480 55.000 19.45 3.37 34.35 2.73
1529 8223 1.231221 GTTGTCGCAACACCATACCA 58.769 50.000 14.97 0.00 34.35 3.25
1530 8224 1.810151 GTTGTCGCAACACCATACCAT 59.190 47.619 14.97 0.00 34.35 3.55
1531 8225 3.004171 GTTGTCGCAACACCATACCATA 58.996 45.455 14.97 0.00 34.35 2.74
1580 8274 5.694006 CCCTATTTCGACACAAAATTTTGCA 59.306 36.000 26.94 6.87 41.79 4.08
1607 8305 5.177326 AGATCATGACTTGTCTGAGCTTTC 58.823 41.667 0.00 0.00 32.04 2.62
1608 8306 3.320626 TCATGACTTGTCTGAGCTTTCG 58.679 45.455 0.00 0.00 0.00 3.46
1609 8307 2.890808 TGACTTGTCTGAGCTTTCGT 57.109 45.000 2.35 0.00 0.00 3.85
1613 8311 4.034048 TGACTTGTCTGAGCTTTCGTTTTC 59.966 41.667 2.35 0.00 0.00 2.29
1614 8312 3.312697 ACTTGTCTGAGCTTTCGTTTTCC 59.687 43.478 0.00 0.00 0.00 3.13
1615 8313 1.864711 TGTCTGAGCTTTCGTTTTCCG 59.135 47.619 0.00 0.00 38.13 4.30
1616 8314 2.132762 GTCTGAGCTTTCGTTTTCCGA 58.867 47.619 0.00 0.00 45.66 4.55
1636 8335 3.060940 CGATCACCGTTCATCTTTCGATG 60.061 47.826 0.00 0.00 46.73 3.84
1643 8342 4.122776 CGTTCATCTTTCGATGGATCCTT 58.877 43.478 14.23 6.57 45.66 3.36
1656 8355 1.546029 GGATCCTTTGCACCCTGAAAC 59.454 52.381 3.84 0.00 0.00 2.78
1666 8365 1.376037 CCCTGAAACCTCGCCAGAC 60.376 63.158 0.00 0.00 0.00 3.51
1677 8376 2.366533 CTCGCCAGACAAGTACTCCTA 58.633 52.381 0.00 0.00 0.00 2.94
1690 8389 3.690628 AGTACTCCTAGCTTGAACGAGAC 59.309 47.826 0.00 0.00 0.00 3.36
1694 8393 5.682659 ACTCCTAGCTTGAACGAGACTATA 58.317 41.667 0.00 0.00 0.00 1.31
1696 8395 6.205853 ACTCCTAGCTTGAACGAGACTATATG 59.794 42.308 0.00 0.00 0.00 1.78
1697 8396 6.062749 TCCTAGCTTGAACGAGACTATATGT 58.937 40.000 0.00 0.00 0.00 2.29
1698 8397 7.222161 TCCTAGCTTGAACGAGACTATATGTA 58.778 38.462 0.00 0.00 0.00 2.29
1699 8398 7.718314 TCCTAGCTTGAACGAGACTATATGTAA 59.282 37.037 0.00 0.00 0.00 2.41
1700 8399 8.350722 CCTAGCTTGAACGAGACTATATGTAAA 58.649 37.037 0.00 0.00 0.00 2.01
1701 8400 9.900710 CTAGCTTGAACGAGACTATATGTAAAT 57.099 33.333 0.00 0.00 0.00 1.40
1702 8401 8.804688 AGCTTGAACGAGACTATATGTAAATC 57.195 34.615 0.00 0.00 0.00 2.17
1703 8402 7.591795 AGCTTGAACGAGACTATATGTAAATCG 59.408 37.037 0.00 0.00 36.17 3.34
1704 8403 7.590322 GCTTGAACGAGACTATATGTAAATCGA 59.410 37.037 0.00 0.00 34.98 3.59
1705 8404 9.447040 CTTGAACGAGACTATATGTAAATCGAA 57.553 33.333 0.00 0.00 34.98 3.71
1706 8405 9.791820 TTGAACGAGACTATATGTAAATCGAAA 57.208 29.630 0.00 0.00 34.98 3.46
1707 8406 9.229784 TGAACGAGACTATATGTAAATCGAAAC 57.770 33.333 0.00 0.00 34.98 2.78
1708 8407 8.571461 AACGAGACTATATGTAAATCGAAACC 57.429 34.615 0.00 0.00 34.98 3.27
1709 8408 7.709947 ACGAGACTATATGTAAATCGAAACCA 58.290 34.615 0.00 0.00 34.98 3.67
1710 8409 8.358148 ACGAGACTATATGTAAATCGAAACCAT 58.642 33.333 0.00 0.00 34.98 3.55
1711 8410 8.851416 CGAGACTATATGTAAATCGAAACCATC 58.149 37.037 0.00 0.00 33.69 3.51
1712 8411 9.915629 GAGACTATATGTAAATCGAAACCATCT 57.084 33.333 0.00 0.00 0.00 2.90
1713 8412 9.698309 AGACTATATGTAAATCGAAACCATCTG 57.302 33.333 0.00 0.00 0.00 2.90
1714 8413 8.833231 ACTATATGTAAATCGAAACCATCTGG 57.167 34.615 0.00 0.00 42.17 3.86
1715 8414 8.647796 ACTATATGTAAATCGAAACCATCTGGA 58.352 33.333 2.55 0.00 38.94 3.86
1716 8415 9.489084 CTATATGTAAATCGAAACCATCTGGAA 57.511 33.333 2.55 0.00 38.94 3.53
1717 8416 8.746052 ATATGTAAATCGAAACCATCTGGAAA 57.254 30.769 2.55 0.00 38.94 3.13
1718 8417 7.645058 ATGTAAATCGAAACCATCTGGAAAT 57.355 32.000 2.55 0.00 38.94 2.17
1719 8418 7.083875 TGTAAATCGAAACCATCTGGAAATC 57.916 36.000 2.55 0.00 38.94 2.17
1720 8419 5.582689 AAATCGAAACCATCTGGAAATCC 57.417 39.130 2.55 0.00 38.94 3.01
1721 8420 2.999331 TCGAAACCATCTGGAAATCCC 58.001 47.619 2.55 0.00 38.94 3.85
1722 8421 2.576191 TCGAAACCATCTGGAAATCCCT 59.424 45.455 2.55 0.00 38.94 4.20
1723 8422 2.684881 CGAAACCATCTGGAAATCCCTG 59.315 50.000 2.55 0.00 38.94 4.45
1724 8423 3.701664 GAAACCATCTGGAAATCCCTGT 58.298 45.455 2.55 0.00 38.94 4.00
1725 8424 3.833559 AACCATCTGGAAATCCCTGTT 57.166 42.857 2.55 0.00 38.94 3.16
1726 8425 3.833559 ACCATCTGGAAATCCCTGTTT 57.166 42.857 2.55 0.00 38.94 2.83
1727 8426 3.701664 ACCATCTGGAAATCCCTGTTTC 58.298 45.455 2.55 0.00 38.94 2.78
1728 8427 3.075882 ACCATCTGGAAATCCCTGTTTCA 59.924 43.478 2.55 0.00 39.33 2.69
1729 8428 4.088634 CCATCTGGAAATCCCTGTTTCAA 58.911 43.478 0.00 0.00 39.33 2.69
1730 8429 4.082026 CCATCTGGAAATCCCTGTTTCAAC 60.082 45.833 0.00 0.00 39.33 3.18
1731 8430 4.177537 TCTGGAAATCCCTGTTTCAACA 57.822 40.909 0.00 0.00 39.33 3.33
1732 8431 3.888930 TCTGGAAATCCCTGTTTCAACAC 59.111 43.478 0.00 0.00 39.33 3.32
1733 8432 3.636300 CTGGAAATCCCTGTTTCAACACA 59.364 43.478 0.00 0.00 39.33 3.72
1734 8433 4.026744 TGGAAATCCCTGTTTCAACACAA 58.973 39.130 0.00 0.00 39.33 3.33
1735 8434 4.467795 TGGAAATCCCTGTTTCAACACAAA 59.532 37.500 0.00 0.00 39.33 2.83
1736 8435 5.130145 TGGAAATCCCTGTTTCAACACAAAT 59.870 36.000 0.00 0.00 39.33 2.32
1737 8436 6.054941 GGAAATCCCTGTTTCAACACAAATT 58.945 36.000 2.32 0.00 39.33 1.82
1738 8437 6.542005 GGAAATCCCTGTTTCAACACAAATTT 59.458 34.615 2.32 0.00 39.33 1.82
1739 8438 7.254761 GGAAATCCCTGTTTCAACACAAATTTC 60.255 37.037 13.96 13.96 39.33 2.17
1740 8439 5.930837 TCCCTGTTTCAACACAAATTTCT 57.069 34.783 0.00 0.00 34.70 2.52
1741 8440 5.659463 TCCCTGTTTCAACACAAATTTCTG 58.341 37.500 0.00 0.00 34.70 3.02
1742 8441 4.270808 CCCTGTTTCAACACAAATTTCTGC 59.729 41.667 0.00 0.00 34.70 4.26
1743 8442 4.270808 CCTGTTTCAACACAAATTTCTGCC 59.729 41.667 0.00 0.00 34.70 4.85
1744 8443 4.187694 TGTTTCAACACAAATTTCTGCCC 58.812 39.130 0.00 0.00 33.17 5.36
1745 8444 4.187694 GTTTCAACACAAATTTCTGCCCA 58.812 39.130 0.00 0.00 0.00 5.36
1746 8445 4.478206 TTCAACACAAATTTCTGCCCAA 57.522 36.364 0.00 0.00 0.00 4.12
1747 8446 4.478206 TCAACACAAATTTCTGCCCAAA 57.522 36.364 0.00 0.00 0.00 3.28
1748 8447 4.440880 TCAACACAAATTTCTGCCCAAAG 58.559 39.130 0.00 0.00 0.00 2.77
1749 8448 4.161189 TCAACACAAATTTCTGCCCAAAGA 59.839 37.500 0.00 0.00 0.00 2.52
1750 8449 4.961438 ACACAAATTTCTGCCCAAAGAT 57.039 36.364 0.00 0.00 0.00 2.40
1751 8450 4.886579 ACACAAATTTCTGCCCAAAGATC 58.113 39.130 0.00 0.00 0.00 2.75
1763 8462 2.426024 CCCAAAGATCATGGCTTGTCTG 59.574 50.000 11.14 0.00 36.58 3.51
1786 8485 2.159612 GCTTTACGTTTTCCGATCACCC 60.160 50.000 0.00 0.00 40.70 4.61
1789 8488 2.265589 ACGTTTTCCGATCACCCTTT 57.734 45.000 0.00 0.00 40.70 3.11
1795 8494 5.123344 CGTTTTCCGATCACCCTTTATCTTT 59.877 40.000 0.00 0.00 39.56 2.52
1796 8495 6.349033 CGTTTTCCGATCACCCTTTATCTTTT 60.349 38.462 0.00 0.00 39.56 2.27
1797 8496 6.509418 TTTCCGATCACCCTTTATCTTTTG 57.491 37.500 0.00 0.00 0.00 2.44
1805 8504 6.414732 TCACCCTTTATCTTTTGTCGATCAT 58.585 36.000 0.00 0.00 0.00 2.45
1809 8508 7.557719 ACCCTTTATCTTTTGTCGATCATTCAT 59.442 33.333 0.00 0.00 0.00 2.57
1917 8892 8.519526 ACATGAAAAAGGATTCGTTAAGCATTA 58.480 29.630 0.00 0.00 31.80 1.90
1992 8967 5.721480 TGTAGTCAAGAATCAAGATGGGAGA 59.279 40.000 0.00 0.00 0.00 3.71
1994 8969 4.163839 AGTCAAGAATCAAGATGGGAGAGG 59.836 45.833 0.00 0.00 0.00 3.69
2035 9010 4.314961 TGCCCATGCACGAATATTACTAG 58.685 43.478 0.00 0.00 44.23 2.57
2037 9012 5.011227 TGCCCATGCACGAATATTACTAGTA 59.989 40.000 0.00 0.00 44.23 1.82
2039 9014 6.688578 CCCATGCACGAATATTACTAGTACT 58.311 40.000 0.91 0.00 0.00 2.73
2040 9015 6.586463 CCCATGCACGAATATTACTAGTACTG 59.414 42.308 5.39 0.00 0.00 2.74
2041 9016 6.089551 CCATGCACGAATATTACTAGTACTGC 59.910 42.308 5.39 4.12 0.00 4.40
2042 9017 5.526115 TGCACGAATATTACTAGTACTGCC 58.474 41.667 5.39 0.00 0.00 4.85
2043 9018 5.301045 TGCACGAATATTACTAGTACTGCCT 59.699 40.000 5.39 0.00 0.00 4.75
2044 9019 6.183360 TGCACGAATATTACTAGTACTGCCTT 60.183 38.462 5.39 0.00 0.00 4.35
2047 9022 6.700520 ACGAATATTACTAGTACTGCCTTTGC 59.299 38.462 5.39 0.00 38.26 3.68
2050 9025 0.974383 ACTAGTACTGCCTTTGCCGT 59.026 50.000 5.39 0.00 38.56 5.68
2088 9063 3.455619 GTGGAACGATTTGTACTGCAG 57.544 47.619 13.48 13.48 0.00 4.41
2095 9070 1.282157 GATTTGTACTGCAGAGGGGGT 59.718 52.381 23.35 0.00 0.00 4.95
2098 9073 2.032965 TGTACTGCAGAGGGGGTAAA 57.967 50.000 23.35 0.00 0.00 2.01
2099 9074 2.557869 TGTACTGCAGAGGGGGTAAAT 58.442 47.619 23.35 0.00 0.00 1.40
2109 9084 5.891551 GCAGAGGGGGTAAATGAAAATAGAA 59.108 40.000 0.00 0.00 0.00 2.10
2115 9090 6.037940 GGGGGTAAATGAAAATAGAAGACGAC 59.962 42.308 0.00 0.00 0.00 4.34
2155 9130 7.678194 ACATTCACGTTATTTTCTGTTGTTG 57.322 32.000 0.00 0.00 0.00 3.33
2156 9131 7.476667 ACATTCACGTTATTTTCTGTTGTTGA 58.523 30.769 0.00 0.00 0.00 3.18
2157 9132 8.134895 ACATTCACGTTATTTTCTGTTGTTGAT 58.865 29.630 0.00 0.00 0.00 2.57
2158 9133 8.629986 CATTCACGTTATTTTCTGTTGTTGATC 58.370 33.333 0.00 0.00 0.00 2.92
2159 9134 6.664515 TCACGTTATTTTCTGTTGTTGATCC 58.335 36.000 0.00 0.00 0.00 3.36
2160 9135 5.563751 CACGTTATTTTCTGTTGTTGATCCG 59.436 40.000 0.00 0.00 0.00 4.18
2161 9136 4.553429 CGTTATTTTCTGTTGTTGATCCGC 59.447 41.667 0.00 0.00 0.00 5.54
2162 9137 5.616866 CGTTATTTTCTGTTGTTGATCCGCT 60.617 40.000 0.00 0.00 0.00 5.52
2163 9138 6.401688 CGTTATTTTCTGTTGTTGATCCGCTA 60.402 38.462 0.00 0.00 0.00 4.26
2164 9139 5.551760 ATTTTCTGTTGTTGATCCGCTAG 57.448 39.130 0.00 0.00 0.00 3.42
2165 9140 3.953712 TTCTGTTGTTGATCCGCTAGA 57.046 42.857 0.00 0.00 0.00 2.43
2166 9141 4.471904 TTCTGTTGTTGATCCGCTAGAT 57.528 40.909 0.00 0.00 38.17 1.98
2262 9237 1.017177 GCATGCACGAACGGGAGTAA 61.017 55.000 14.21 0.00 46.69 2.24
2263 9238 0.719465 CATGCACGAACGGGAGTAAC 59.281 55.000 0.00 0.00 46.69 2.50
2264 9239 0.606604 ATGCACGAACGGGAGTAACT 59.393 50.000 0.00 0.00 46.69 2.24
2265 9240 1.246649 TGCACGAACGGGAGTAACTA 58.753 50.000 0.00 0.00 46.69 2.24
2266 9241 1.612950 TGCACGAACGGGAGTAACTAA 59.387 47.619 0.00 0.00 46.69 2.24
2267 9242 2.231964 TGCACGAACGGGAGTAACTAAT 59.768 45.455 0.00 0.00 46.69 1.73
2268 9243 2.856557 GCACGAACGGGAGTAACTAATC 59.143 50.000 0.00 0.00 46.69 1.75
2269 9244 3.428589 GCACGAACGGGAGTAACTAATCT 60.429 47.826 0.00 0.00 46.69 2.40
2270 9245 4.201950 GCACGAACGGGAGTAACTAATCTA 60.202 45.833 0.00 0.00 46.69 1.98
2271 9246 5.506982 GCACGAACGGGAGTAACTAATCTAT 60.507 44.000 0.00 0.00 46.69 1.98
2272 9247 6.501781 CACGAACGGGAGTAACTAATCTATT 58.498 40.000 0.00 0.00 46.69 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.972127 ACTGTACTGTATCTGTATGTGATTCTT 58.028 33.333 3.21 0.00 0.00 2.52
30 31 7.168302 GCACTGTACTGTATCTGTATGTGATTC 59.832 40.741 4.96 0.00 32.80 2.52
33 34 5.417580 TGCACTGTACTGTATCTGTATGTGA 59.582 40.000 4.96 0.00 32.80 3.58
34 35 5.516696 GTGCACTGTACTGTATCTGTATGTG 59.483 44.000 10.32 12.85 33.41 3.21
36 37 4.735338 CGTGCACTGTACTGTATCTGTATG 59.265 45.833 16.19 0.00 0.00 2.39
37 38 4.638865 TCGTGCACTGTACTGTATCTGTAT 59.361 41.667 16.19 0.00 0.00 2.29
38 39 4.004982 TCGTGCACTGTACTGTATCTGTA 58.995 43.478 16.19 0.00 0.00 2.74
40 41 3.487563 TCGTGCACTGTACTGTATCTG 57.512 47.619 16.19 0.00 0.00 2.90
41 42 4.276183 CCTATCGTGCACTGTACTGTATCT 59.724 45.833 16.19 0.00 0.00 1.98
123 787 0.663153 ATTATCGCGCCAGGCTTTTC 59.337 50.000 10.54 0.00 40.44 2.29
138 802 8.517878 GTGCTAATGCTTGGTGATGATAATTAT 58.482 33.333 0.00 0.00 40.48 1.28
179 847 7.172342 ACTTGTATCAGTATAAAACCAGGCAA 58.828 34.615 0.00 0.00 0.00 4.52
185 853 7.767198 TGCCTGTACTTGTATCAGTATAAAACC 59.233 37.037 0.00 0.00 31.82 3.27
275 951 3.305471 GGAGTAGATCAGTATTGGCGTCC 60.305 52.174 0.00 0.00 0.00 4.79
281 957 5.446143 AAGAGCGGAGTAGATCAGTATTG 57.554 43.478 0.00 0.00 0.00 1.90
292 968 0.673644 GGCAGCAAAAGAGCGGAGTA 60.674 55.000 0.00 0.00 40.15 2.59
305 981 1.001974 ACGTCAATACTCAAGGCAGCA 59.998 47.619 0.00 0.00 0.00 4.41
324 1000 3.175109 ACCATATCGTCCTTCGGAAAC 57.825 47.619 0.00 0.00 40.32 2.78
325 1001 3.449737 AGAACCATATCGTCCTTCGGAAA 59.550 43.478 0.00 0.00 40.32 3.13
326 1002 3.028850 AGAACCATATCGTCCTTCGGAA 58.971 45.455 0.00 0.00 40.32 4.30
327 1003 2.621998 GAGAACCATATCGTCCTTCGGA 59.378 50.000 0.00 0.00 40.32 4.55
328 1004 2.288273 GGAGAACCATATCGTCCTTCGG 60.288 54.545 0.00 0.00 36.81 4.30
329 1005 2.623889 AGGAGAACCATATCGTCCTTCG 59.376 50.000 0.00 0.00 33.66 3.79
330 1006 3.800604 GCAGGAGAACCATATCGTCCTTC 60.801 52.174 0.00 0.00 35.34 3.46
331 1007 2.103263 GCAGGAGAACCATATCGTCCTT 59.897 50.000 0.00 0.00 35.34 3.36
332 1008 1.689273 GCAGGAGAACCATATCGTCCT 59.311 52.381 0.00 0.00 38.21 3.85
333 1009 1.689273 AGCAGGAGAACCATATCGTCC 59.311 52.381 0.00 0.00 38.94 4.79
334 1010 3.570550 ACTAGCAGGAGAACCATATCGTC 59.429 47.826 0.00 0.00 38.94 4.20
335 1011 3.567397 ACTAGCAGGAGAACCATATCGT 58.433 45.455 0.00 0.00 38.94 3.73
336 1012 4.519350 TGTACTAGCAGGAGAACCATATCG 59.481 45.833 0.00 0.00 38.94 2.92
337 1013 5.770663 TCTGTACTAGCAGGAGAACCATATC 59.229 44.000 0.00 0.00 38.94 1.63
338 1014 5.536916 GTCTGTACTAGCAGGAGAACCATAT 59.463 44.000 0.00 0.00 38.94 1.78
339 1015 4.888239 GTCTGTACTAGCAGGAGAACCATA 59.112 45.833 0.00 0.00 38.94 2.74
340 1016 3.702045 GTCTGTACTAGCAGGAGAACCAT 59.298 47.826 0.00 0.00 38.94 3.55
341 1017 3.090037 GTCTGTACTAGCAGGAGAACCA 58.910 50.000 0.00 0.00 38.94 3.67
342 1018 3.129638 CAGTCTGTACTAGCAGGAGAACC 59.870 52.174 0.00 0.00 37.12 3.62
343 1019 4.011023 TCAGTCTGTACTAGCAGGAGAAC 58.989 47.826 0.00 0.00 37.12 3.01
344 1020 4.011023 GTCAGTCTGTACTAGCAGGAGAA 58.989 47.826 0.00 0.00 37.12 2.87
345 1021 3.611970 GTCAGTCTGTACTAGCAGGAGA 58.388 50.000 0.00 0.00 37.12 3.71
346 1022 2.353269 CGTCAGTCTGTACTAGCAGGAG 59.647 54.545 0.00 0.00 37.12 3.69
347 1023 2.357075 CGTCAGTCTGTACTAGCAGGA 58.643 52.381 0.00 0.00 37.12 3.86
348 1024 1.402259 CCGTCAGTCTGTACTAGCAGG 59.598 57.143 0.00 0.00 37.12 4.85
349 1025 2.357075 TCCGTCAGTCTGTACTAGCAG 58.643 52.381 0.00 0.00 33.48 4.24
378 1054 2.826128 AGAAGTCGTCATTCTACAGCCA 59.174 45.455 0.00 0.00 35.26 4.75
427 1103 6.622549 TGTAATGTTGTTCAACTCGGTTTTT 58.377 32.000 15.18 3.19 0.00 1.94
440 1116 6.371809 TCGAGAAGCTTTTGTAATGTTGTT 57.628 33.333 0.00 0.00 0.00 2.83
495 3997 6.685657 ACTAGTCAAAAAGGTAGTAAGTCGG 58.314 40.000 0.00 0.00 0.00 4.79
531 4063 1.503542 CTGTTGATCCAAGTGCGCC 59.496 57.895 4.18 0.00 0.00 6.53
534 4066 1.168714 GTCCCTGTTGATCCAAGTGC 58.831 55.000 0.00 0.00 0.00 4.40
541 4074 2.484264 CCTTTGAACGTCCCTGTTGATC 59.516 50.000 0.00 0.00 30.75 2.92
560 4093 0.107945 GAAAGAGCAGACATCGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
561 4094 0.391661 TGAAAGAGCAGACATCGCCC 60.392 55.000 0.00 0.00 0.00 6.13
562 4095 1.596727 GATGAAAGAGCAGACATCGCC 59.403 52.381 0.00 0.00 31.74 5.54
623 4156 2.713894 GAGACGAAAACGACGGCGG 61.714 63.158 18.49 0.00 44.04 6.13
652 4185 3.558411 GACACGCATGCGCTCTCC 61.558 66.667 38.15 19.46 44.19 3.71
747 4283 1.846124 CGGGGGTAGCCATGGGTAT 60.846 63.158 25.67 0.00 0.00 2.73
748 4284 2.446994 CGGGGGTAGCCATGGGTA 60.447 66.667 19.74 19.74 0.00 3.69
913 4690 2.131067 GGGAGGAAGAGGAGAGCGG 61.131 68.421 0.00 0.00 0.00 5.52
935 4712 3.037833 GCTGCTTTTTGTGCGGGC 61.038 61.111 0.00 0.00 37.29 6.13
1251 7806 4.021925 GACTCCTGGTGCCCGCTT 62.022 66.667 0.00 0.00 0.00 4.68
1527 8221 6.710295 TCCAGATGGTTTCGATTTACATATGG 59.290 38.462 19.17 19.17 46.72 2.74
1528 8222 7.728847 TCCAGATGGTTTCGATTTACATATG 57.271 36.000 0.00 0.00 36.34 1.78
1529 8223 8.746052 TTTCCAGATGGTTTCGATTTACATAT 57.254 30.769 0.00 0.00 36.34 1.78
1530 8224 8.746052 ATTTCCAGATGGTTTCGATTTACATA 57.254 30.769 0.00 0.00 36.34 2.29
1531 8225 7.201821 GGATTTCCAGATGGTTTCGATTTACAT 60.202 37.037 0.00 0.00 36.34 2.29
1580 8274 4.694509 GCTCAGACAAGTCATGATCTTTGT 59.305 41.667 17.67 17.67 0.00 2.83
1607 8305 1.141645 TGAACGGTGATCGGAAAACG 58.858 50.000 0.00 0.55 44.45 3.60
1608 8306 3.000727 AGATGAACGGTGATCGGAAAAC 58.999 45.455 0.00 0.00 44.45 2.43
1609 8307 3.328382 AGATGAACGGTGATCGGAAAA 57.672 42.857 0.00 0.00 44.45 2.29
1613 8311 1.588404 CGAAAGATGAACGGTGATCGG 59.412 52.381 0.00 0.00 44.45 4.18
1614 8312 2.526077 TCGAAAGATGAACGGTGATCG 58.474 47.619 0.00 0.00 39.32 3.69
1636 8335 1.546029 GTTTCAGGGTGCAAAGGATCC 59.454 52.381 2.48 2.48 0.00 3.36
1643 8342 1.896660 GCGAGGTTTCAGGGTGCAA 60.897 57.895 0.00 0.00 0.00 4.08
1656 8355 0.173708 GGAGTACTTGTCTGGCGAGG 59.826 60.000 0.00 0.00 32.77 4.63
1666 8365 4.156190 TCTCGTTCAAGCTAGGAGTACTTG 59.844 45.833 0.00 0.00 41.70 3.16
1677 8376 7.591795 CGATTTACATATAGTCTCGTTCAAGCT 59.408 37.037 0.00 0.00 0.00 3.74
1690 8389 9.489084 TTCCAGATGGTTTCGATTTACATATAG 57.511 33.333 0.00 0.00 36.34 1.31
1694 8393 7.201821 GGATTTCCAGATGGTTTCGATTTACAT 60.202 37.037 0.00 0.00 36.34 2.29
1696 8395 6.459710 GGGATTTCCAGATGGTTTCGATTTAC 60.460 42.308 0.00 0.00 37.91 2.01
1697 8396 5.592688 GGGATTTCCAGATGGTTTCGATTTA 59.407 40.000 0.00 0.00 37.91 1.40
1698 8397 4.402474 GGGATTTCCAGATGGTTTCGATTT 59.598 41.667 0.00 0.00 37.91 2.17
1699 8398 3.954258 GGGATTTCCAGATGGTTTCGATT 59.046 43.478 0.00 0.00 37.91 3.34
1700 8399 3.203040 AGGGATTTCCAGATGGTTTCGAT 59.797 43.478 0.00 0.00 38.24 3.59
1701 8400 2.576191 AGGGATTTCCAGATGGTTTCGA 59.424 45.455 0.00 0.00 38.24 3.71
1702 8401 2.684881 CAGGGATTTCCAGATGGTTTCG 59.315 50.000 0.00 0.00 38.24 3.46
1703 8402 3.701664 ACAGGGATTTCCAGATGGTTTC 58.298 45.455 0.00 0.00 38.24 2.78
1704 8403 3.833559 ACAGGGATTTCCAGATGGTTT 57.166 42.857 0.00 0.00 38.24 3.27
1705 8404 3.833559 AACAGGGATTTCCAGATGGTT 57.166 42.857 0.00 0.00 38.24 3.67
1706 8405 3.075882 TGAAACAGGGATTTCCAGATGGT 59.924 43.478 0.00 0.00 37.72 3.55
1707 8406 3.700538 TGAAACAGGGATTTCCAGATGG 58.299 45.455 0.00 0.00 37.72 3.51
1708 8407 4.523943 TGTTGAAACAGGGATTTCCAGATG 59.476 41.667 0.00 0.00 37.72 2.90
1709 8408 4.524328 GTGTTGAAACAGGGATTTCCAGAT 59.476 41.667 0.00 0.00 40.05 2.90
1710 8409 3.888930 GTGTTGAAACAGGGATTTCCAGA 59.111 43.478 0.00 0.00 40.05 3.86
1711 8410 3.636300 TGTGTTGAAACAGGGATTTCCAG 59.364 43.478 0.00 0.00 40.05 3.86
1712 8411 3.636679 TGTGTTGAAACAGGGATTTCCA 58.363 40.909 0.00 0.00 40.05 3.53
1713 8412 4.664150 TTGTGTTGAAACAGGGATTTCC 57.336 40.909 0.00 0.00 40.05 3.13
1714 8413 7.495606 AGAAATTTGTGTTGAAACAGGGATTTC 59.504 33.333 18.67 18.67 40.05 2.17
1715 8414 7.280652 CAGAAATTTGTGTTGAAACAGGGATTT 59.719 33.333 7.15 3.81 40.05 2.17
1716 8415 6.762661 CAGAAATTTGTGTTGAAACAGGGATT 59.237 34.615 7.15 0.00 40.05 3.01
1717 8416 6.282930 CAGAAATTTGTGTTGAAACAGGGAT 58.717 36.000 7.15 0.00 40.05 3.85
1718 8417 5.659463 CAGAAATTTGTGTTGAAACAGGGA 58.341 37.500 7.15 0.00 40.05 4.20
1719 8418 4.270808 GCAGAAATTTGTGTTGAAACAGGG 59.729 41.667 15.91 0.00 40.05 4.45
1720 8419 4.270808 GGCAGAAATTTGTGTTGAAACAGG 59.729 41.667 15.91 0.00 40.05 4.00
1721 8420 4.270808 GGGCAGAAATTTGTGTTGAAACAG 59.729 41.667 15.91 0.00 40.05 3.16
1722 8421 4.187694 GGGCAGAAATTTGTGTTGAAACA 58.812 39.130 15.91 0.00 36.38 2.83
1723 8422 4.187694 TGGGCAGAAATTTGTGTTGAAAC 58.812 39.130 15.91 0.00 0.00 2.78
1724 8423 4.478206 TGGGCAGAAATTTGTGTTGAAA 57.522 36.364 15.91 0.00 0.00 2.69
1725 8424 4.478206 TTGGGCAGAAATTTGTGTTGAA 57.522 36.364 15.91 4.55 0.00 2.69
1726 8425 4.161189 TCTTTGGGCAGAAATTTGTGTTGA 59.839 37.500 15.91 4.30 0.00 3.18
1727 8426 4.440880 TCTTTGGGCAGAAATTTGTGTTG 58.559 39.130 15.91 1.57 0.00 3.33
1728 8427 4.751767 TCTTTGGGCAGAAATTTGTGTT 57.248 36.364 15.91 0.00 0.00 3.32
1729 8428 4.344679 TGATCTTTGGGCAGAAATTTGTGT 59.655 37.500 15.91 0.00 0.00 3.72
1730 8429 4.885413 TGATCTTTGGGCAGAAATTTGTG 58.115 39.130 10.85 10.85 0.00 3.33
1731 8430 5.484715 CATGATCTTTGGGCAGAAATTTGT 58.515 37.500 0.00 0.00 0.00 2.83
1732 8431 4.873827 CCATGATCTTTGGGCAGAAATTTG 59.126 41.667 0.00 0.00 0.00 2.32
1733 8432 4.624604 GCCATGATCTTTGGGCAGAAATTT 60.625 41.667 14.63 0.00 45.70 1.82
1734 8433 3.118519 GCCATGATCTTTGGGCAGAAATT 60.119 43.478 14.63 0.00 45.70 1.82
1735 8434 2.433239 GCCATGATCTTTGGGCAGAAAT 59.567 45.455 14.63 0.00 45.70 2.17
1736 8435 1.826720 GCCATGATCTTTGGGCAGAAA 59.173 47.619 14.63 0.00 45.70 2.52
1737 8436 1.477553 GCCATGATCTTTGGGCAGAA 58.522 50.000 14.63 0.00 45.70 3.02
1738 8437 3.196040 GCCATGATCTTTGGGCAGA 57.804 52.632 14.63 0.00 45.70 4.26
1741 8440 1.135721 GACAAGCCATGATCTTTGGGC 59.864 52.381 14.63 11.74 46.77 5.36
1742 8441 2.426024 CAGACAAGCCATGATCTTTGGG 59.574 50.000 14.63 3.50 34.66 4.12
1743 8442 3.349927 TCAGACAAGCCATGATCTTTGG 58.650 45.455 10.04 10.04 37.31 3.28
1744 8443 3.181499 GCTCAGACAAGCCATGATCTTTG 60.181 47.826 0.00 0.00 36.22 2.77
1745 8444 3.015327 GCTCAGACAAGCCATGATCTTT 58.985 45.455 0.00 0.00 36.22 2.52
1746 8445 2.239150 AGCTCAGACAAGCCATGATCTT 59.761 45.455 0.00 0.00 43.56 2.40
1747 8446 1.838715 AGCTCAGACAAGCCATGATCT 59.161 47.619 0.00 0.00 43.56 2.75
1748 8447 2.328819 AGCTCAGACAAGCCATGATC 57.671 50.000 0.00 0.00 43.56 2.92
1749 8448 2.803030 AAGCTCAGACAAGCCATGAT 57.197 45.000 0.00 0.00 43.56 2.45
1750 8449 2.574006 AAAGCTCAGACAAGCCATGA 57.426 45.000 0.00 0.00 43.56 3.07
1751 8450 2.094894 CGTAAAGCTCAGACAAGCCATG 59.905 50.000 0.00 0.00 43.56 3.66
1763 8462 3.181523 GGTGATCGGAAAACGTAAAGCTC 60.182 47.826 0.00 0.00 44.69 4.09
1786 8485 7.911727 TGCATGAATGATCGACAAAAGATAAAG 59.088 33.333 0.00 0.00 0.00 1.85
1789 8488 6.923928 TGCATGAATGATCGACAAAAGATA 57.076 33.333 0.00 0.00 0.00 1.98
1795 8494 3.487879 GCACATGCATGAATGATCGACAA 60.488 43.478 32.75 0.00 41.59 3.18
1796 8495 2.032426 GCACATGCATGAATGATCGACA 59.968 45.455 32.75 0.00 41.59 4.35
1797 8496 2.603892 GGCACATGCATGAATGATCGAC 60.604 50.000 32.75 6.64 44.36 4.20
1805 8504 2.158559 ACGTTAAGGCACATGCATGAA 58.841 42.857 32.75 12.70 44.36 2.57
1809 8508 2.226912 GGTTAACGTTAAGGCACATGCA 59.773 45.455 20.66 0.00 44.36 3.96
1917 8892 6.670233 TCAACGACAACACAAAAGTAAAGTT 58.330 32.000 0.00 0.00 0.00 2.66
1922 8897 8.603983 GTTAAATCAACGACAACACAAAAGTA 57.396 30.769 0.00 0.00 0.00 2.24
1961 8936 5.420421 TCTTGATTCTTGACTACAGGAGGAG 59.580 44.000 0.00 0.00 33.85 3.69
1963 8938 5.667539 TCTTGATTCTTGACTACAGGAGG 57.332 43.478 0.00 0.00 33.85 4.30
1992 8967 2.039879 AGGCGAACATGGAGTTAAACCT 59.960 45.455 0.00 0.00 41.51 3.50
1994 8969 2.414161 GCAGGCGAACATGGAGTTAAAC 60.414 50.000 0.00 0.00 41.51 2.01
2039 9014 2.124109 TGTGGAACGGCAAAGGCA 60.124 55.556 0.00 0.00 42.39 4.75
2040 9015 2.644992 CTGTGGAACGGCAAAGGC 59.355 61.111 0.00 0.00 42.39 4.35
2041 9016 3.354678 CCTGTGGAACGGCAAAGG 58.645 61.111 0.00 0.00 43.57 3.11
2047 9022 2.819595 CATCGGCCTGTGGAACGG 60.820 66.667 0.00 0.00 44.86 4.44
2050 9025 2.668632 GGTCATCGGCCTGTGGAA 59.331 61.111 0.00 0.00 0.00 3.53
2060 9035 1.060553 CAAATCGTTCCACGGTCATCG 59.939 52.381 0.00 0.00 42.81 3.84
2077 9052 2.032965 TACCCCCTCTGCAGTACAAA 57.967 50.000 14.67 0.00 0.00 2.83
2079 9054 2.032965 TTTACCCCCTCTGCAGTACA 57.967 50.000 14.67 0.00 0.00 2.90
2088 9063 6.260271 CGTCTTCTATTTTCATTTACCCCCTC 59.740 42.308 0.00 0.00 0.00 4.30
2139 9114 5.699839 AGCGGATCAACAACAGAAAATAAC 58.300 37.500 0.00 0.00 0.00 1.89
2156 9131 7.415592 TCATCTCATTAATGATCTAGCGGAT 57.584 36.000 18.26 12.24 36.02 4.18
2157 9132 6.840780 TCATCTCATTAATGATCTAGCGGA 57.159 37.500 18.26 10.57 36.02 5.54
2158 9133 8.489990 AAATCATCTCATTAATGATCTAGCGG 57.510 34.615 18.26 5.55 41.79 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.