Multiple sequence alignment - TraesCS2D01G453900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G453900 chr2D 100.000 2490 0 0 1 2490 562683912 562686401 0.000000e+00 4599.0
1 TraesCS2D01G453900 chr2D 86.329 907 61 24 827 1719 562753829 562754686 0.000000e+00 929.0
2 TraesCS2D01G453900 chr2D 82.476 953 106 33 779 1684 562845035 562845973 0.000000e+00 778.0
3 TraesCS2D01G453900 chr2D 83.752 757 79 31 957 1684 562839519 562840260 0.000000e+00 676.0
4 TraesCS2D01G453900 chr2D 89.562 479 44 6 1057 1532 562735069 562735544 9.850000e-169 603.0
5 TraesCS2D01G453900 chr2D 82.865 712 76 23 932 1620 562807724 562808412 4.580000e-167 597.0
6 TraesCS2D01G453900 chr2D 90.343 321 28 2 304 622 562734521 562734840 3.830000e-113 418.0
7 TraesCS2D01G453900 chr2D 92.701 274 20 0 324 597 562784991 562785264 1.790000e-106 396.0
8 TraesCS2D01G453900 chr2D 80.503 477 61 13 950 1396 563008797 563009271 1.100000e-88 337.0
9 TraesCS2D01G453900 chr2D 93.627 204 10 3 1843 2043 562754690 562754893 4.020000e-78 302.0
10 TraesCS2D01G453900 chr2D 82.443 262 36 8 406 662 562585106 562585362 1.160000e-53 220.0
11 TraesCS2D01G453900 chr2D 83.491 212 22 8 1841 2043 562735751 562735958 4.230000e-43 185.0
12 TraesCS2D01G453900 chr2D 85.417 144 9 2 774 916 562839387 562839519 3.340000e-29 139.0
13 TraesCS2D01G453900 chr2D 88.596 114 7 3 1 108 562784664 562784777 1.550000e-27 134.0
14 TraesCS2D01G453900 chr2D 84.672 137 12 2 1 137 562838841 562838968 7.230000e-26 128.0
15 TraesCS2D01G453900 chr2D 86.842 114 9 3 1 108 562734181 562734294 3.360000e-24 122.0
16 TraesCS2D01G453900 chr2D 86.325 117 8 4 779 887 562807608 562807724 1.210000e-23 121.0
17 TraesCS2D01G453900 chr2D 91.667 72 5 1 827 897 562734925 562734996 5.670000e-17 99.0
18 TraesCS2D01G453900 chr2D 100.000 28 0 0 110 137 562784793 562784820 4.000000e-03 52.8
19 TraesCS2D01G453900 chr2A 95.547 786 32 3 575 1360 703207107 703207889 0.000000e+00 1254.0
20 TraesCS2D01G453900 chr2A 85.601 632 64 15 961 1577 703291103 703291722 2.700000e-179 638.0
21 TraesCS2D01G453900 chr2A 82.216 776 87 31 937 1684 703345824 703346576 2.720000e-174 621.0
22 TraesCS2D01G453900 chr2A 91.988 337 15 9 1431 1763 703283058 703283386 1.740000e-126 462.0
23 TraesCS2D01G453900 chr2A 84.444 450 24 14 142 582 703206424 703206836 3.860000e-108 401.0
24 TraesCS2D01G453900 chr2A 89.247 279 14 2 1480 1758 703208582 703208844 3.970000e-88 335.0
25 TraesCS2D01G453900 chr2A 95.098 204 7 3 1843 2043 703208840 703209043 4.000000e-83 318.0
26 TraesCS2D01G453900 chr2A 89.873 158 13 3 866 1023 703337391 703337545 1.510000e-47 200.0
27 TraesCS2D01G453900 chr2A 92.701 137 10 0 1 137 703205983 703206119 5.430000e-47 198.0
28 TraesCS2D01G453900 chr2A 83.962 212 21 10 1841 2043 703291908 703292115 9.090000e-45 191.0
29 TraesCS2D01G453900 chr2A 88.732 142 8 4 1482 1623 703337929 703338062 1.530000e-37 167.0
30 TraesCS2D01G453900 chr2A 87.500 136 17 0 462 597 703290804 703290939 9.220000e-35 158.0
31 TraesCS2D01G453900 chr2A 79.668 241 28 13 1 231 703345293 703345522 1.190000e-33 154.0
32 TraesCS2D01G453900 chr2A 86.842 114 9 3 1 108 703288872 703288985 3.360000e-24 122.0
33 TraesCS2D01G453900 chr2A 80.916 131 19 2 2294 2418 384989817 384989687 5.670000e-17 99.0
34 TraesCS2D01G453900 chr2A 94.828 58 3 0 389 446 703281964 703282021 9.480000e-15 91.6
35 TraesCS2D01G453900 chr2B 81.641 1645 131 60 146 1684 672645577 672647156 0.000000e+00 1206.0
36 TraesCS2D01G453900 chr2B 84.173 1112 91 37 362 1399 672797724 672796624 0.000000e+00 1000.0
37 TraesCS2D01G453900 chr2B 85.563 942 71 25 831 1737 673050657 673051568 0.000000e+00 926.0
38 TraesCS2D01G453900 chr2B 89.831 472 37 6 930 1399 672776308 672775846 1.650000e-166 595.0
39 TraesCS2D01G453900 chr2B 87.273 495 50 8 954 1445 672668536 672669020 1.010000e-153 553.0
40 TraesCS2D01G453900 chr2B 85.493 517 53 15 895 1396 673170461 673170970 1.020000e-143 520.0
41 TraesCS2D01G453900 chr2B 84.635 384 31 14 143 508 673002013 673002386 8.470000e-95 357.0
42 TraesCS2D01G453900 chr2B 94.944 178 7 2 1868 2043 673051573 673051750 6.780000e-71 278.0
43 TraesCS2D01G453900 chr2B 78.910 422 61 18 246 648 672828625 672828213 6.830000e-66 261.0
44 TraesCS2D01G453900 chr2B 92.958 142 4 3 1 137 673001839 673001979 4.200000e-48 202.0
45 TraesCS2D01G453900 chr2B 76.280 371 42 28 1 333 672798079 672797717 3.320000e-34 156.0
46 TraesCS2D01G453900 chr2B 85.256 156 16 5 1468 1623 672796590 672796442 1.190000e-33 154.0
47 TraesCS2D01G453900 chr2B 96.104 77 3 0 827 903 672666966 672667042 2.600000e-25 126.0
48 TraesCS2D01G453900 chr2B 81.884 138 15 5 1488 1624 672825432 672825304 9.420000e-20 108.0
49 TraesCS2D01G453900 chr2B 83.478 115 6 1 437 551 673092533 673092634 7.330000e-16 95.3
50 TraesCS2D01G453900 chr2B 82.759 116 9 4 779 893 673092740 673092845 2.640000e-15 93.5
51 TraesCS2D01G453900 chr2B 92.188 64 4 1 1781 1844 553847243 553847305 3.410000e-14 89.8
52 TraesCS2D01G453900 chr2B 91.667 60 4 1 1625 1684 673006575 673006633 5.710000e-12 82.4
53 TraesCS2D01G453900 chr2B 100.000 29 0 0 1749 1777 593010953 593010981 1.000000e-03 54.7
54 TraesCS2D01G453900 chr4D 85.219 433 53 7 2064 2490 77291713 77292140 3.800000e-118 435.0
55 TraesCS2D01G453900 chr7A 83.410 434 63 7 2064 2490 663361669 663361238 6.460000e-106 394.0
56 TraesCS2D01G453900 chr7D 82.963 135 17 1 2294 2422 375301927 375302061 1.560000e-22 117.0
57 TraesCS2D01G453900 chr7D 81.452 124 17 3 2305 2422 37109052 37108929 2.040000e-16 97.1
58 TraesCS2D01G453900 chr4B 91.139 79 4 3 1755 1833 74683904 74683979 1.220000e-18 104.0
59 TraesCS2D01G453900 chr4B 90.476 63 6 0 1777 1839 660419608 660419670 1.590000e-12 84.2
60 TraesCS2D01G453900 chr4B 90.476 63 6 0 1777 1839 660448916 660448978 1.590000e-12 84.2
61 TraesCS2D01G453900 chr6B 96.364 55 2 0 1781 1835 107822377 107822431 9.480000e-15 91.6
62 TraesCS2D01G453900 chr6B 89.189 74 4 3 1781 1851 283791417 283791489 3.410000e-14 89.8
63 TraesCS2D01G453900 chr7B 93.220 59 4 0 1781 1839 728810648 728810706 1.230000e-13 87.9
64 TraesCS2D01G453900 chr5D 79.845 129 19 2 2294 2416 386130725 386130852 1.230000e-13 87.9
65 TraesCS2D01G453900 chr3A 92.063 63 4 1 1780 1842 294509570 294509509 1.230000e-13 87.9
66 TraesCS2D01G453900 chr1B 89.855 69 4 1 1767 1835 472926008 472926073 4.410000e-13 86.1
67 TraesCS2D01G453900 chr1B 100.000 30 0 0 1748 1777 505613708 505613737 3.460000e-04 56.5
68 TraesCS2D01G453900 chr6D 78.788 132 22 1 2297 2422 45814327 45814458 1.590000e-12 84.2
69 TraesCS2D01G453900 chr6D 90.000 60 4 2 2364 2422 7252407 7252349 2.660000e-10 76.8
70 TraesCS2D01G453900 chr5B 76.974 152 20 10 2270 2420 712961967 712961830 3.440000e-09 73.1
71 TraesCS2D01G453900 chr5B 97.059 34 0 1 1745 1777 221907861 221907894 3.460000e-04 56.5
72 TraesCS2D01G453900 chr5B 100.000 28 0 0 1750 1777 616648665 616648638 4.000000e-03 52.8
73 TraesCS2D01G453900 chr4A 100.000 28 0 0 1752 1779 401729631 401729658 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G453900 chr2D 562683912 562686401 2489 False 4599.000000 4599 100.000000 1 2490 1 chr2D.!!$F2 2489
1 TraesCS2D01G453900 chr2D 562845035 562845973 938 False 778.000000 778 82.476000 779 1684 1 chr2D.!!$F3 905
2 TraesCS2D01G453900 chr2D 562753829 562754893 1064 False 615.500000 929 89.978000 827 2043 2 chr2D.!!$F6 1216
3 TraesCS2D01G453900 chr2D 562807608 562808412 804 False 359.000000 597 84.595000 779 1620 2 chr2D.!!$F8 841
4 TraesCS2D01G453900 chr2D 562838841 562840260 1419 False 314.333333 676 84.613667 1 1684 3 chr2D.!!$F9 1683
5 TraesCS2D01G453900 chr2D 562734181 562735958 1777 False 285.400000 603 88.381000 1 2043 5 chr2D.!!$F5 2042
6 TraesCS2D01G453900 chr2A 703205983 703209043 3060 False 501.200000 1254 91.407400 1 2043 5 chr2A.!!$F1 2042
7 TraesCS2D01G453900 chr2A 703345293 703346576 1283 False 387.500000 621 80.942000 1 1684 2 chr2A.!!$F5 1683
8 TraesCS2D01G453900 chr2A 703288872 703292115 3243 False 277.250000 638 85.976250 1 2043 4 chr2A.!!$F3 2042
9 TraesCS2D01G453900 chr2A 703281964 703283386 1422 False 276.800000 462 93.408000 389 1763 2 chr2A.!!$F2 1374
10 TraesCS2D01G453900 chr2B 672645577 672647156 1579 False 1206.000000 1206 81.641000 146 1684 1 chr2B.!!$F3 1538
11 TraesCS2D01G453900 chr2B 673050657 673051750 1093 False 602.000000 926 90.253500 831 2043 2 chr2B.!!$F8 1212
12 TraesCS2D01G453900 chr2B 673170461 673170970 509 False 520.000000 520 85.493000 895 1396 1 chr2B.!!$F5 501
13 TraesCS2D01G453900 chr2B 672796442 672798079 1637 True 436.666667 1000 81.903000 1 1623 3 chr2B.!!$R2 1622
14 TraesCS2D01G453900 chr2B 672666966 672669020 2054 False 339.500000 553 91.688500 827 1445 2 chr2B.!!$F6 618
15 TraesCS2D01G453900 chr2B 673001839 673002386 547 False 279.500000 357 88.796500 1 508 2 chr2B.!!$F7 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 184 0.165944 GAAACGTGCACGATCCCTTG 59.834 55.0 42.94 14.31 43.02 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 7077 0.180406 AGCGGTCAAGTTGGAACAGT 59.82 50.0 2.34 0.0 42.39 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 182 1.736645 CGAAACGTGCACGATCCCT 60.737 57.895 42.94 19.98 43.02 4.20
138 183 1.289109 CGAAACGTGCACGATCCCTT 61.289 55.000 42.94 24.64 43.02 3.95
139 184 0.165944 GAAACGTGCACGATCCCTTG 59.834 55.000 42.94 14.31 43.02 3.61
257 2253 2.180276 AGCTGGTCCGTAGACAAGATT 58.820 47.619 1.70 0.00 45.79 2.40
259 2255 3.008049 AGCTGGTCCGTAGACAAGATTTT 59.992 43.478 1.70 0.00 45.79 1.82
285 2281 3.767230 CGCGCGAGTCCACAGTTG 61.767 66.667 28.94 0.00 0.00 3.16
286 2282 4.077188 GCGCGAGTCCACAGTTGC 62.077 66.667 12.10 0.00 0.00 4.17
287 2283 2.356313 CGCGAGTCCACAGTTGCT 60.356 61.111 0.00 0.00 30.67 3.91
288 2284 2.661566 CGCGAGTCCACAGTTGCTG 61.662 63.158 0.00 0.00 37.52 4.41
289 2285 2.959357 GCGAGTCCACAGTTGCTGC 61.959 63.158 0.00 0.00 34.37 5.25
290 2286 2.320587 CGAGTCCACAGTTGCTGCC 61.321 63.158 0.00 0.00 34.37 4.85
291 2287 2.281070 AGTCCACAGTTGCTGCCG 60.281 61.111 0.00 0.00 34.37 5.69
292 2288 2.591715 GTCCACAGTTGCTGCCGT 60.592 61.111 0.00 0.00 34.37 5.68
293 2289 2.591429 TCCACAGTTGCTGCCGTG 60.591 61.111 0.00 0.00 34.37 4.94
294 2290 3.663176 CCACAGTTGCTGCCGTGG 61.663 66.667 11.52 11.52 42.72 4.94
295 2291 4.332637 CACAGTTGCTGCCGTGGC 62.333 66.667 3.30 3.30 42.35 5.01
310 2306 4.465512 GGCGAGCATGCACGGTTG 62.466 66.667 33.03 12.88 36.28 3.77
525 2568 1.242076 CCTGTCTCCTTTGTTGGCAG 58.758 55.000 0.00 0.00 0.00 4.85
526 2569 1.242076 CTGTCTCCTTTGTTGGCAGG 58.758 55.000 0.00 0.00 0.00 4.85
551 2595 1.227999 TGGCGCGCTAATTATCAGCC 61.228 55.000 32.29 9.96 43.05 4.85
574 2618 6.675026 CCCAAAACCTTAGCACTAGTTTAAC 58.325 40.000 0.00 0.00 32.38 2.01
652 2978 1.558294 TCTACGACTAGAGGAGGCACA 59.442 52.381 0.00 0.00 28.99 4.57
749 3088 4.106197 GGCTACATTTCTAGTCGTCACAG 58.894 47.826 0.00 0.00 0.00 3.66
777 3117 7.630242 ATCACAACTCTTTCTTTGAACTTGA 57.370 32.000 0.00 0.00 0.00 3.02
820 3169 0.898320 AGGGACGTTCCAGACAGATG 59.102 55.000 17.22 0.00 38.64 2.90
941 4641 1.888736 GGACCACAGTACTCCGACC 59.111 63.158 0.00 0.00 0.00 4.79
1068 4966 2.263852 CTCTGCTCTGCTCCGCAA 59.736 61.111 0.00 0.00 38.41 4.85
1092 4990 2.229062 TGCTCGAAAGTCACCTACTCAG 59.771 50.000 0.00 0.00 37.50 3.35
1372 5924 2.743928 CAGCGGCAGTCCAGGAAC 60.744 66.667 1.45 0.00 0.00 3.62
1459 6366 7.672983 TTCAGAAGAATACAACATCTGTTCC 57.327 36.000 0.00 0.00 39.64 3.62
1460 6367 7.009179 TCAGAAGAATACAACATCTGTTCCT 57.991 36.000 0.00 0.00 39.64 3.36
1461 6368 7.453393 TCAGAAGAATACAACATCTGTTCCTT 58.547 34.615 0.00 0.00 39.64 3.36
1462 6369 7.604164 TCAGAAGAATACAACATCTGTTCCTTC 59.396 37.037 0.00 0.00 39.64 3.46
1463 6370 7.388776 CAGAAGAATACAACATCTGTTCCTTCA 59.611 37.037 0.00 0.00 39.64 3.02
1464 6371 7.939039 AGAAGAATACAACATCTGTTCCTTCAA 59.061 33.333 0.00 0.00 39.64 2.69
1465 6372 8.463930 AAGAATACAACATCTGTTCCTTCAAA 57.536 30.769 0.00 0.00 39.64 2.69
1466 6373 8.463930 AGAATACAACATCTGTTCCTTCAAAA 57.536 30.769 0.00 0.00 39.64 2.44
1467 6374 8.912988 AGAATACAACATCTGTTCCTTCAAAAA 58.087 29.630 0.00 0.00 39.64 1.94
1537 6471 2.185350 CGGTGCTCTAGCCTGGTG 59.815 66.667 0.00 0.00 41.18 4.17
1741 6764 8.922058 AGAGCAATCAAACATGATTAACATTC 57.078 30.769 0.00 0.07 36.82 2.67
1760 6783 7.981102 ACATTCTGTTTTAACTTCTACTCCC 57.019 36.000 0.00 0.00 0.00 4.30
1761 6784 7.746703 ACATTCTGTTTTAACTTCTACTCCCT 58.253 34.615 0.00 0.00 0.00 4.20
1762 6785 7.878644 ACATTCTGTTTTAACTTCTACTCCCTC 59.121 37.037 0.00 0.00 0.00 4.30
1763 6786 6.356186 TCTGTTTTAACTTCTACTCCCTCC 57.644 41.667 0.00 0.00 0.00 4.30
1764 6787 5.047519 TCTGTTTTAACTTCTACTCCCTCCG 60.048 44.000 0.00 0.00 0.00 4.63
1765 6788 4.590222 TGTTTTAACTTCTACTCCCTCCGT 59.410 41.667 0.00 0.00 0.00 4.69
1766 6789 5.167121 GTTTTAACTTCTACTCCCTCCGTC 58.833 45.833 0.00 0.00 0.00 4.79
1767 6790 1.849977 AACTTCTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
1768 6791 0.394080 ACTTCTACTCCCTCCGTCCG 60.394 60.000 0.00 0.00 0.00 4.79
1769 6792 0.107312 CTTCTACTCCCTCCGTCCGA 60.107 60.000 0.00 0.00 0.00 4.55
1770 6793 0.329261 TTCTACTCCCTCCGTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
1771 6794 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
1772 6795 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1773 6796 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1774 6797 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1775 6798 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1776 6799 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1777 6800 2.954318 CTCCCTCCGTCCGAAAATACTA 59.046 50.000 0.00 0.00 0.00 1.82
1778 6801 3.569491 TCCCTCCGTCCGAAAATACTAT 58.431 45.455 0.00 0.00 0.00 2.12
1779 6802 4.728772 TCCCTCCGTCCGAAAATACTATA 58.271 43.478 0.00 0.00 0.00 1.31
1780 6803 5.327732 TCCCTCCGTCCGAAAATACTATAT 58.672 41.667 0.00 0.00 0.00 0.86
1781 6804 5.416952 TCCCTCCGTCCGAAAATACTATATC 59.583 44.000 0.00 0.00 0.00 1.63
1782 6805 5.418209 CCCTCCGTCCGAAAATACTATATCT 59.582 44.000 0.00 0.00 0.00 1.98
1783 6806 6.600822 CCCTCCGTCCGAAAATACTATATCTA 59.399 42.308 0.00 0.00 0.00 1.98
1784 6807 7.201714 CCCTCCGTCCGAAAATACTATATCTAG 60.202 44.444 0.00 0.00 0.00 2.43
1785 6808 7.551974 CCTCCGTCCGAAAATACTATATCTAGA 59.448 40.741 0.00 0.00 0.00 2.43
1786 6809 9.111613 CTCCGTCCGAAAATACTATATCTAGAT 57.888 37.037 10.73 10.73 0.00 1.98
1832 6855 8.648557 TGATGACAAATATTTCTAGACGAAGG 57.351 34.615 0.00 0.00 32.21 3.46
1833 6856 7.710907 TGATGACAAATATTTCTAGACGAAGGG 59.289 37.037 0.00 0.00 32.21 3.95
1834 6857 7.177832 TGACAAATATTTCTAGACGAAGGGA 57.822 36.000 0.00 0.00 32.21 4.20
1835 6858 7.617225 TGACAAATATTTCTAGACGAAGGGAA 58.383 34.615 0.00 0.00 32.21 3.97
1836 6859 8.265055 TGACAAATATTTCTAGACGAAGGGAAT 58.735 33.333 0.00 0.00 32.21 3.01
1837 6860 9.760077 GACAAATATTTCTAGACGAAGGGAATA 57.240 33.333 0.00 0.00 32.21 1.75
1838 6861 9.543783 ACAAATATTTCTAGACGAAGGGAATAC 57.456 33.333 0.00 0.00 32.21 1.89
1839 6862 8.700644 CAAATATTTCTAGACGAAGGGAATACG 58.299 37.037 0.00 0.00 32.21 3.06
1840 6863 5.848833 ATTTCTAGACGAAGGGAATACGT 57.151 39.130 0.00 0.00 42.84 3.57
1841 6864 6.949352 ATTTCTAGACGAAGGGAATACGTA 57.051 37.500 0.00 0.00 40.29 3.57
1842 6865 5.741388 TTCTAGACGAAGGGAATACGTAC 57.259 43.478 0.00 0.00 40.29 3.67
1843 6866 5.028549 TCTAGACGAAGGGAATACGTACT 57.971 43.478 0.00 0.00 40.29 2.73
1844 6867 6.161855 TCTAGACGAAGGGAATACGTACTA 57.838 41.667 0.00 0.00 40.29 1.82
1873 6896 3.780173 GCCCTTCTGCGCCTCTCT 61.780 66.667 4.18 0.00 0.00 3.10
1893 6920 8.731605 CCTCTCTTTTAGTTTCCCTTTAATGAC 58.268 37.037 0.00 0.00 0.00 3.06
1900 6927 6.139679 AGTTTCCCTTTAATGACTGGATCA 57.860 37.500 0.00 0.00 43.13 2.92
1981 7010 5.080337 TGGCAACCAACCTACAAATTATCA 58.920 37.500 0.00 0.00 0.00 2.15
2043 7072 9.920133 GCATCTCTAATGTTTCTAGTGATATGA 57.080 33.333 0.00 0.00 31.58 2.15
2050 7079 8.743085 AATGTTTCTAGTGATATGATTGCACT 57.257 30.769 0.00 0.00 44.38 4.40
2051 7080 7.543947 TGTTTCTAGTGATATGATTGCACTG 57.456 36.000 0.00 0.00 42.38 3.66
2052 7081 7.105588 TGTTTCTAGTGATATGATTGCACTGT 58.894 34.615 0.00 0.00 42.38 3.55
2053 7082 7.607607 TGTTTCTAGTGATATGATTGCACTGTT 59.392 33.333 0.00 0.00 42.38 3.16
2054 7083 7.776933 TTCTAGTGATATGATTGCACTGTTC 57.223 36.000 0.00 0.00 42.38 3.18
2055 7084 6.283694 TCTAGTGATATGATTGCACTGTTCC 58.716 40.000 0.00 0.00 42.38 3.62
2056 7085 4.847198 AGTGATATGATTGCACTGTTCCA 58.153 39.130 0.00 0.00 41.02 3.53
2057 7086 5.255687 AGTGATATGATTGCACTGTTCCAA 58.744 37.500 0.00 0.00 41.02 3.53
2058 7087 5.124457 AGTGATATGATTGCACTGTTCCAAC 59.876 40.000 0.00 0.00 41.02 3.77
2059 7088 5.124457 GTGATATGATTGCACTGTTCCAACT 59.876 40.000 0.00 0.00 0.00 3.16
2060 7089 5.711506 TGATATGATTGCACTGTTCCAACTT 59.288 36.000 0.00 0.00 0.00 2.66
2061 7090 3.713858 TGATTGCACTGTTCCAACTTG 57.286 42.857 0.00 0.00 0.00 3.16
2062 7091 3.286353 TGATTGCACTGTTCCAACTTGA 58.714 40.909 0.00 0.00 0.00 3.02
2063 7092 3.066621 TGATTGCACTGTTCCAACTTGAC 59.933 43.478 0.00 0.00 0.00 3.18
2064 7093 1.388547 TGCACTGTTCCAACTTGACC 58.611 50.000 0.00 0.00 0.00 4.02
2065 7094 0.307760 GCACTGTTCCAACTTGACCG 59.692 55.000 0.00 0.00 0.00 4.79
2066 7095 0.307760 CACTGTTCCAACTTGACCGC 59.692 55.000 0.00 0.00 0.00 5.68
2067 7096 0.180406 ACTGTTCCAACTTGACCGCT 59.820 50.000 0.00 0.00 0.00 5.52
2068 7097 0.868406 CTGTTCCAACTTGACCGCTC 59.132 55.000 0.00 0.00 0.00 5.03
2069 7098 0.878523 TGTTCCAACTTGACCGCTCG 60.879 55.000 0.00 0.00 0.00 5.03
2070 7099 1.301401 TTCCAACTTGACCGCTCGG 60.301 57.895 6.79 6.79 42.03 4.63
2071 7100 2.725203 TTCCAACTTGACCGCTCGGG 62.725 60.000 13.31 0.00 43.62 5.14
2101 7130 4.033894 CGATCCAATCTCGCCACC 57.966 61.111 0.00 0.00 0.00 4.61
2102 7131 1.951130 CGATCCAATCTCGCCACCG 60.951 63.158 0.00 0.00 0.00 4.94
2103 7132 2.203070 ATCCAATCTCGCCACCGC 60.203 61.111 0.00 0.00 0.00 5.68
2104 7133 2.923426 GATCCAATCTCGCCACCGCA 62.923 60.000 0.00 0.00 34.03 5.69
2105 7134 2.930385 ATCCAATCTCGCCACCGCAG 62.930 60.000 0.00 0.00 34.03 5.18
2119 7148 4.792804 GCAGGCAGCCCTCCAGAC 62.793 72.222 8.22 0.00 40.33 3.51
2120 7149 3.007920 CAGGCAGCCCTCCAGACT 61.008 66.667 8.22 0.00 40.33 3.24
2121 7150 2.686835 AGGCAGCCCTCCAGACTC 60.687 66.667 8.22 0.00 36.46 3.36
2122 7151 3.791586 GGCAGCCCTCCAGACTCC 61.792 72.222 0.00 0.00 0.00 3.85
2123 7152 2.686835 GCAGCCCTCCAGACTCCT 60.687 66.667 0.00 0.00 0.00 3.69
2124 7153 2.730524 GCAGCCCTCCAGACTCCTC 61.731 68.421 0.00 0.00 0.00 3.71
2125 7154 1.305633 CAGCCCTCCAGACTCCTCA 60.306 63.158 0.00 0.00 0.00 3.86
2126 7155 0.690411 CAGCCCTCCAGACTCCTCAT 60.690 60.000 0.00 0.00 0.00 2.90
2127 7156 0.398381 AGCCCTCCAGACTCCTCATC 60.398 60.000 0.00 0.00 0.00 2.92
2128 7157 0.398381 GCCCTCCAGACTCCTCATCT 60.398 60.000 0.00 0.00 0.00 2.90
2129 7158 1.703411 CCCTCCAGACTCCTCATCTC 58.297 60.000 0.00 0.00 0.00 2.75
2130 7159 1.317613 CCTCCAGACTCCTCATCTCG 58.682 60.000 0.00 0.00 0.00 4.04
2131 7160 0.667993 CTCCAGACTCCTCATCTCGC 59.332 60.000 0.00 0.00 0.00 5.03
2132 7161 0.753479 TCCAGACTCCTCATCTCGCC 60.753 60.000 0.00 0.00 0.00 5.54
2133 7162 1.358402 CAGACTCCTCATCTCGCCG 59.642 63.158 0.00 0.00 0.00 6.46
2134 7163 2.026879 GACTCCTCATCTCGCCGC 59.973 66.667 0.00 0.00 0.00 6.53
2135 7164 3.492311 GACTCCTCATCTCGCCGCC 62.492 68.421 0.00 0.00 0.00 6.13
2136 7165 4.292178 CTCCTCATCTCGCCGCCC 62.292 72.222 0.00 0.00 0.00 6.13
2138 7167 4.598894 CCTCATCTCGCCGCCCAG 62.599 72.222 0.00 0.00 0.00 4.45
2169 7198 4.445545 CGAAGCTTGCGCGGGTTC 62.446 66.667 24.93 24.93 42.32 3.62
2170 7199 4.445545 GAAGCTTGCGCGGGTTCG 62.446 66.667 22.29 2.13 42.32 3.95
2171 7200 4.980805 AAGCTTGCGCGGGTTCGA 62.981 61.111 8.83 0.00 42.32 3.71
2174 7203 4.735132 CTTGCGCGGGTTCGAGGA 62.735 66.667 8.83 0.00 39.00 3.71
2180 7209 4.796231 CGGGTTCGAGGACTGCGG 62.796 72.222 0.00 0.00 39.00 5.69
2182 7211 4.373116 GGTTCGAGGACTGCGGCA 62.373 66.667 1.29 1.29 0.00 5.69
2183 7212 2.125512 GTTCGAGGACTGCGGCAT 60.126 61.111 1.75 0.00 0.00 4.40
2184 7213 2.167861 GTTCGAGGACTGCGGCATC 61.168 63.158 1.75 3.51 0.00 3.91
2185 7214 2.645192 TTCGAGGACTGCGGCATCA 61.645 57.895 1.75 0.00 0.00 3.07
2186 7215 2.563050 TTCGAGGACTGCGGCATCAG 62.563 60.000 1.75 0.00 39.86 2.90
2187 7216 2.202987 GAGGACTGCGGCATCAGG 60.203 66.667 1.75 0.00 38.36 3.86
2188 7217 3.746949 GAGGACTGCGGCATCAGGG 62.747 68.421 1.75 0.00 38.36 4.45
2190 7219 4.783621 GACTGCGGCATCAGGGCA 62.784 66.667 1.75 0.00 43.60 5.36
2191 7220 4.119363 ACTGCGGCATCAGGGCAT 62.119 61.111 1.75 0.00 43.60 4.40
2192 7221 2.831742 CTGCGGCATCAGGGCATT 60.832 61.111 1.75 0.00 43.60 3.56
2193 7222 2.362760 TGCGGCATCAGGGCATTT 60.363 55.556 0.00 0.00 43.60 2.32
2194 7223 1.952102 CTGCGGCATCAGGGCATTTT 61.952 55.000 1.75 0.00 43.60 1.82
2195 7224 1.227060 GCGGCATCAGGGCATTTTC 60.227 57.895 0.00 0.00 43.60 2.29
2196 7225 1.669999 GCGGCATCAGGGCATTTTCT 61.670 55.000 0.00 0.00 43.60 2.52
2197 7226 0.819582 CGGCATCAGGGCATTTTCTT 59.180 50.000 0.00 0.00 43.60 2.52
2198 7227 1.205417 CGGCATCAGGGCATTTTCTTT 59.795 47.619 0.00 0.00 43.60 2.52
2199 7228 2.736400 CGGCATCAGGGCATTTTCTTTC 60.736 50.000 0.00 0.00 43.60 2.62
2200 7229 2.498885 GGCATCAGGGCATTTTCTTTCT 59.501 45.455 0.00 0.00 42.77 2.52
2201 7230 3.429960 GGCATCAGGGCATTTTCTTTCTC 60.430 47.826 0.00 0.00 42.77 2.87
2202 7231 3.446516 GCATCAGGGCATTTTCTTTCTCT 59.553 43.478 0.00 0.00 0.00 3.10
2203 7232 4.677250 GCATCAGGGCATTTTCTTTCTCTG 60.677 45.833 0.00 0.00 0.00 3.35
2204 7233 3.424703 TCAGGGCATTTTCTTTCTCTGG 58.575 45.455 0.00 0.00 0.00 3.86
2205 7234 2.094338 CAGGGCATTTTCTTTCTCTGGC 60.094 50.000 0.00 0.00 0.00 4.85
2206 7235 1.135286 GGGCATTTTCTTTCTCTGGCG 60.135 52.381 0.00 0.00 33.58 5.69
2207 7236 1.541588 GGCATTTTCTTTCTCTGGCGT 59.458 47.619 0.00 0.00 0.00 5.68
2208 7237 2.589014 GCATTTTCTTTCTCTGGCGTG 58.411 47.619 0.00 0.00 0.00 5.34
2209 7238 2.669391 GCATTTTCTTTCTCTGGCGTGG 60.669 50.000 0.00 0.00 0.00 4.94
2210 7239 2.631160 TTTTCTTTCTCTGGCGTGGA 57.369 45.000 0.00 0.00 0.00 4.02
2211 7240 2.859165 TTTCTTTCTCTGGCGTGGAT 57.141 45.000 0.00 0.00 0.00 3.41
2212 7241 2.386661 TTCTTTCTCTGGCGTGGATC 57.613 50.000 0.00 0.00 0.00 3.36
2213 7242 0.537188 TCTTTCTCTGGCGTGGATCC 59.463 55.000 4.20 4.20 0.00 3.36
2214 7243 0.462759 CTTTCTCTGGCGTGGATCCC 60.463 60.000 9.90 0.00 0.00 3.85
2215 7244 2.238847 TTTCTCTGGCGTGGATCCCG 62.239 60.000 9.90 13.48 0.00 5.14
2216 7245 3.461773 CTCTGGCGTGGATCCCGT 61.462 66.667 19.53 0.00 0.00 5.28
2217 7246 3.432051 CTCTGGCGTGGATCCCGTC 62.432 68.421 17.19 17.19 0.00 4.79
2218 7247 4.873129 CTGGCGTGGATCCCGTCG 62.873 72.222 18.29 16.20 31.27 5.12
2222 7251 4.508128 CGTGGATCCCGTCGGTGG 62.508 72.222 9.90 0.00 0.00 4.61
2223 7252 4.832608 GTGGATCCCGTCGGTGGC 62.833 72.222 9.90 0.00 0.00 5.01
2247 7276 3.691342 CTGAAGGCGTCGGGTGGA 61.691 66.667 0.86 0.00 0.00 4.02
2248 7277 3.000819 TGAAGGCGTCGGGTGGAT 61.001 61.111 0.00 0.00 0.00 3.41
2249 7278 2.202892 GAAGGCGTCGGGTGGATC 60.203 66.667 0.00 0.00 0.00 3.36
2250 7279 3.000819 AAGGCGTCGGGTGGATCA 61.001 61.111 0.00 0.00 0.00 2.92
2251 7280 2.907897 GAAGGCGTCGGGTGGATCAG 62.908 65.000 0.00 0.00 0.00 2.90
2254 7283 4.129737 CGTCGGGTGGATCAGCGT 62.130 66.667 0.00 0.00 32.08 5.07
2255 7284 2.509336 GTCGGGTGGATCAGCGTG 60.509 66.667 0.00 0.00 32.08 5.34
2256 7285 3.770040 TCGGGTGGATCAGCGTGG 61.770 66.667 0.00 0.00 32.08 4.94
2259 7288 4.451150 GGTGGATCAGCGTGGCGA 62.451 66.667 0.00 0.00 0.00 5.54
2260 7289 3.188786 GTGGATCAGCGTGGCGAC 61.189 66.667 0.00 0.00 0.00 5.19
2261 7290 3.381983 TGGATCAGCGTGGCGACT 61.382 61.111 0.00 0.00 0.00 4.18
2262 7291 2.049767 TGGATCAGCGTGGCGACTA 61.050 57.895 0.00 0.00 0.00 2.59
2263 7292 1.589196 GGATCAGCGTGGCGACTAC 60.589 63.158 0.00 0.00 0.00 2.73
2264 7293 1.138883 GATCAGCGTGGCGACTACA 59.861 57.895 0.00 0.00 0.00 2.74
2265 7294 0.867753 GATCAGCGTGGCGACTACAG 60.868 60.000 0.00 0.00 0.00 2.74
2266 7295 2.890847 ATCAGCGTGGCGACTACAGC 62.891 60.000 0.00 0.00 0.00 4.40
2267 7296 3.680786 AGCGTGGCGACTACAGCA 61.681 61.111 0.00 0.00 36.08 4.41
2268 7297 3.181967 GCGTGGCGACTACAGCAG 61.182 66.667 0.00 0.00 36.08 4.24
2269 7298 2.507102 CGTGGCGACTACAGCAGG 60.507 66.667 0.00 0.00 36.08 4.85
2270 7299 2.125512 GTGGCGACTACAGCAGGG 60.126 66.667 0.00 0.00 36.08 4.45
2271 7300 4.082523 TGGCGACTACAGCAGGGC 62.083 66.667 0.00 0.00 36.08 5.19
2272 7301 3.775654 GGCGACTACAGCAGGGCT 61.776 66.667 0.00 0.00 40.77 5.19
2294 7323 4.263572 CACCCTCAACCGGCACCA 62.264 66.667 0.00 0.00 0.00 4.17
2295 7324 3.953775 ACCCTCAACCGGCACCAG 61.954 66.667 0.00 0.00 0.00 4.00
2296 7325 3.636231 CCCTCAACCGGCACCAGA 61.636 66.667 0.00 0.00 0.00 3.86
2297 7326 2.671070 CCTCAACCGGCACCAGAT 59.329 61.111 0.00 0.00 0.00 2.90
2298 7327 1.450312 CCTCAACCGGCACCAGATC 60.450 63.158 0.00 0.00 0.00 2.75
2299 7328 1.450312 CTCAACCGGCACCAGATCC 60.450 63.158 0.00 0.00 0.00 3.36
2300 7329 2.184020 CTCAACCGGCACCAGATCCA 62.184 60.000 0.00 0.00 0.00 3.41
2301 7330 1.746615 CAACCGGCACCAGATCCAG 60.747 63.158 0.00 0.00 0.00 3.86
2302 7331 1.918293 AACCGGCACCAGATCCAGA 60.918 57.895 0.00 0.00 0.00 3.86
2303 7332 1.903877 AACCGGCACCAGATCCAGAG 61.904 60.000 0.00 0.00 0.00 3.35
2304 7333 2.202987 CGGCACCAGATCCAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
2305 7334 2.202987 GGCACCAGATCCAGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
2306 7335 2.202987 GCACCAGATCCAGAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
2307 7336 2.503061 CACCAGATCCAGAGCGGG 59.497 66.667 0.31 0.31 38.05 6.13
2308 7337 2.039624 ACCAGATCCAGAGCGGGT 59.960 61.111 1.69 1.69 40.33 5.28
2309 7338 2.362369 ACCAGATCCAGAGCGGGTG 61.362 63.158 6.94 0.00 43.33 4.61
2310 7339 2.503061 CAGATCCAGAGCGGGTGG 59.497 66.667 0.00 0.00 36.28 4.61
2311 7340 2.039624 AGATCCAGAGCGGGTGGT 59.960 61.111 2.47 0.00 36.37 4.16
2312 7341 2.060980 AGATCCAGAGCGGGTGGTC 61.061 63.158 2.47 1.01 42.99 4.02
2313 7342 2.284625 ATCCAGAGCGGGTGGTCA 60.285 61.111 2.47 0.00 45.10 4.02
2314 7343 2.579684 GATCCAGAGCGGGTGGTCAC 62.580 65.000 2.47 0.00 45.10 3.67
2323 7352 3.209318 GGTGGTCACCGCGGTATA 58.791 61.111 33.70 20.00 42.29 1.47
2324 7353 1.227060 GGTGGTCACCGCGGTATAC 60.227 63.158 33.70 29.44 42.29 1.47
2325 7354 1.227060 GTGGTCACCGCGGTATACC 60.227 63.158 37.25 37.25 35.28 2.73
2326 7355 2.418777 GGTCACCGCGGTATACCC 59.581 66.667 35.51 26.43 31.15 3.69
2327 7356 2.129785 GGTCACCGCGGTATACCCT 61.130 63.158 35.51 12.88 31.15 4.34
2328 7357 1.066918 GTCACCGCGGTATACCCTG 59.933 63.158 33.70 17.36 0.00 4.45
2329 7358 1.380246 TCACCGCGGTATACCCTGT 60.380 57.895 33.70 0.61 0.00 4.00
2330 7359 1.227147 CACCGCGGTATACCCTGTG 60.227 63.158 33.70 11.77 0.00 3.66
2331 7360 1.380246 ACCGCGGTATACCCTGTGA 60.380 57.895 33.34 0.00 0.00 3.58
2332 7361 1.362717 CCGCGGTATACCCTGTGAG 59.637 63.158 19.50 3.98 0.00 3.51
2333 7362 1.362717 CGCGGTATACCCTGTGAGG 59.637 63.158 16.47 1.42 34.30 3.86
2334 7363 1.069258 GCGGTATACCCTGTGAGGC 59.931 63.158 16.47 8.04 32.73 4.70
2335 7364 1.362717 CGGTATACCCTGTGAGGCG 59.637 63.158 16.47 0.00 32.73 5.52
2336 7365 1.746517 GGTATACCCTGTGAGGCGG 59.253 63.158 11.17 0.00 32.73 6.13
2337 7366 0.757935 GGTATACCCTGTGAGGCGGA 60.758 60.000 11.17 0.00 32.73 5.54
2338 7367 0.674534 GTATACCCTGTGAGGCGGAG 59.325 60.000 0.00 0.00 32.73 4.63
2339 7368 0.260816 TATACCCTGTGAGGCGGAGT 59.739 55.000 0.00 0.00 32.73 3.85
2340 7369 0.617820 ATACCCTGTGAGGCGGAGTT 60.618 55.000 0.00 0.00 32.73 3.01
2341 7370 0.834687 TACCCTGTGAGGCGGAGTTT 60.835 55.000 0.00 0.00 32.73 2.66
2342 7371 1.376037 CCCTGTGAGGCGGAGTTTC 60.376 63.158 0.00 0.00 32.73 2.78
2343 7372 1.371183 CCTGTGAGGCGGAGTTTCA 59.629 57.895 0.00 0.00 0.00 2.69
2344 7373 0.036010 CCTGTGAGGCGGAGTTTCAT 60.036 55.000 0.00 0.00 0.00 2.57
2345 7374 1.081892 CTGTGAGGCGGAGTTTCATG 58.918 55.000 0.00 0.00 0.00 3.07
2346 7375 0.955428 TGTGAGGCGGAGTTTCATGC 60.955 55.000 0.00 0.00 0.00 4.06
2347 7376 1.741401 TGAGGCGGAGTTTCATGCG 60.741 57.895 0.00 0.00 37.05 4.73
2348 7377 2.436646 AGGCGGAGTTTCATGCGG 60.437 61.111 0.00 0.00 34.24 5.69
2349 7378 3.508840 GGCGGAGTTTCATGCGGG 61.509 66.667 0.00 0.00 34.24 6.13
2350 7379 3.508840 GCGGAGTTTCATGCGGGG 61.509 66.667 0.00 0.00 34.24 5.73
2351 7380 2.267642 CGGAGTTTCATGCGGGGA 59.732 61.111 0.00 0.00 0.00 4.81
2352 7381 1.376683 CGGAGTTTCATGCGGGGAA 60.377 57.895 0.00 0.00 0.00 3.97
2353 7382 1.369091 CGGAGTTTCATGCGGGGAAG 61.369 60.000 0.00 0.00 0.00 3.46
2354 7383 0.322546 GGAGTTTCATGCGGGGAAGT 60.323 55.000 0.00 0.00 0.00 3.01
2355 7384 1.087501 GAGTTTCATGCGGGGAAGTC 58.912 55.000 0.00 0.00 0.00 3.01
2356 7385 0.673644 AGTTTCATGCGGGGAAGTCG 60.674 55.000 0.00 0.00 0.00 4.18
2357 7386 0.672401 GTTTCATGCGGGGAAGTCGA 60.672 55.000 0.00 0.00 0.00 4.20
2358 7387 0.391130 TTTCATGCGGGGAAGTCGAG 60.391 55.000 0.00 0.00 0.00 4.04
2359 7388 1.254975 TTCATGCGGGGAAGTCGAGA 61.255 55.000 0.00 0.00 0.00 4.04
2360 7389 1.227089 CATGCGGGGAAGTCGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
2361 7390 3.082579 ATGCGGGGAAGTCGAGAGC 62.083 63.158 0.00 0.00 0.00 4.09
2362 7391 3.760035 GCGGGGAAGTCGAGAGCA 61.760 66.667 0.00 0.00 0.00 4.26
2363 7392 2.492090 CGGGGAAGTCGAGAGCAG 59.508 66.667 0.00 0.00 0.00 4.24
2364 7393 2.185608 GGGGAAGTCGAGAGCAGC 59.814 66.667 0.00 0.00 0.00 5.25
2365 7394 2.650116 GGGGAAGTCGAGAGCAGCA 61.650 63.158 0.00 0.00 0.00 4.41
2366 7395 1.153667 GGGAAGTCGAGAGCAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
2367 7396 1.809209 GGAAGTCGAGAGCAGCAGC 60.809 63.158 0.00 0.00 42.56 5.25
2368 7397 1.809209 GAAGTCGAGAGCAGCAGCC 60.809 63.158 0.00 0.00 43.56 4.85
2369 7398 2.498291 GAAGTCGAGAGCAGCAGCCA 62.498 60.000 0.00 0.00 43.56 4.75
2370 7399 2.504163 AAGTCGAGAGCAGCAGCCAG 62.504 60.000 0.00 0.00 43.56 4.85
2371 7400 3.767806 TCGAGAGCAGCAGCCAGG 61.768 66.667 0.00 0.00 43.56 4.45
2372 7401 4.834453 CGAGAGCAGCAGCCAGGG 62.834 72.222 0.00 0.00 43.56 4.45
2411 7440 3.017323 GCGATCGAAGCCACCATG 58.983 61.111 21.57 0.00 0.00 3.66
2412 7441 2.537560 GCGATCGAAGCCACCATGG 61.538 63.158 21.57 11.19 41.55 3.66
2435 7464 2.826702 GGTGACGTGAGGTTGGGT 59.173 61.111 0.00 0.00 0.00 4.51
2436 7465 1.597027 GGTGACGTGAGGTTGGGTG 60.597 63.158 0.00 0.00 0.00 4.61
2437 7466 1.597027 GTGACGTGAGGTTGGGTGG 60.597 63.158 0.00 0.00 0.00 4.61
2438 7467 2.067605 TGACGTGAGGTTGGGTGGT 61.068 57.895 0.00 0.00 0.00 4.16
2439 7468 1.597027 GACGTGAGGTTGGGTGGTG 60.597 63.158 0.00 0.00 0.00 4.17
2440 7469 2.281484 CGTGAGGTTGGGTGGTGG 60.281 66.667 0.00 0.00 0.00 4.61
2441 7470 2.923837 GTGAGGTTGGGTGGTGGT 59.076 61.111 0.00 0.00 0.00 4.16
2442 7471 1.528309 GTGAGGTTGGGTGGTGGTG 60.528 63.158 0.00 0.00 0.00 4.17
2443 7472 2.115266 GAGGTTGGGTGGTGGTGG 59.885 66.667 0.00 0.00 0.00 4.61
2444 7473 2.698406 AGGTTGGGTGGTGGTGGT 60.698 61.111 0.00 0.00 0.00 4.16
2445 7474 2.520741 GGTTGGGTGGTGGTGGTG 60.521 66.667 0.00 0.00 0.00 4.17
2446 7475 2.520741 GTTGGGTGGTGGTGGTGG 60.521 66.667 0.00 0.00 0.00 4.61
2447 7476 4.531426 TTGGGTGGTGGTGGTGGC 62.531 66.667 0.00 0.00 0.00 5.01
2461 7490 4.007644 TGGCGGCACTCCACTCAG 62.008 66.667 7.97 0.00 38.87 3.35
2464 7493 4.056125 CGGCACTCCACTCAGCGA 62.056 66.667 0.00 0.00 0.00 4.93
2465 7494 2.125753 GGCACTCCACTCAGCGAG 60.126 66.667 4.36 4.36 35.52 5.03
2466 7495 2.125753 GCACTCCACTCAGCGAGG 60.126 66.667 9.75 0.00 33.35 4.63
2467 7496 2.575993 CACTCCACTCAGCGAGGG 59.424 66.667 9.75 5.82 33.35 4.30
2468 7497 2.118513 ACTCCACTCAGCGAGGGT 59.881 61.111 9.75 0.00 29.80 4.34
2469 7498 2.279069 ACTCCACTCAGCGAGGGTG 61.279 63.158 5.35 5.35 29.80 4.61
2470 7499 2.203640 TCCACTCAGCGAGGGTGT 60.204 61.111 10.65 0.00 29.80 4.16
2471 7500 2.219325 CTCCACTCAGCGAGGGTGTC 62.219 65.000 10.65 0.00 29.80 3.67
2485 7514 4.377708 TGTCGGCTGCGTGCAGAT 62.378 61.111 25.09 0.00 46.60 2.90
2486 7515 3.857854 GTCGGCTGCGTGCAGATG 61.858 66.667 25.09 15.35 46.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 184 2.055100 GCGAGATTATTGAGCGGACTC 58.945 52.381 0.00 0.00 43.76 3.36
244 2217 5.679906 CACACTTGAAAATCTTGTCTACGG 58.320 41.667 0.00 0.00 0.00 4.02
257 2253 3.222126 CTCGCGCGCACACTTGAAA 62.222 57.895 32.61 1.98 0.00 2.69
259 2255 4.942481 ACTCGCGCGCACACTTGA 62.942 61.111 32.61 17.64 0.00 3.02
293 2289 4.465512 CAACCGTGCATGCTCGCC 62.466 66.667 30.99 11.10 0.00 5.54
526 2569 1.157870 TAATTAGCGCGCCAGGCTTC 61.158 55.000 30.33 0.00 41.80 3.86
551 2595 6.567132 CGGTTAAACTAGTGCTAAGGTTTTGG 60.567 42.308 0.00 0.00 34.40 3.28
574 2618 4.508124 CAGTATAAGTTTAGGCTGCTTCGG 59.492 45.833 0.00 0.00 0.00 4.30
705 3032 5.502869 GCCGTACTTGAAAACTCTCGAAAAA 60.503 40.000 0.00 0.00 0.00 1.94
777 3117 9.965824 CCTGTTGTTGTAAGTTGAGATATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
1068 4966 4.246458 GAGTAGGTGACTTTCGAGCAAAT 58.754 43.478 0.00 0.00 43.67 2.32
1092 4990 0.534877 TGATGGCGCCATGGTATGTC 60.535 55.000 44.96 29.28 36.70 3.06
1372 5924 1.731613 TTAGCTTGCGACCGACACG 60.732 57.895 0.00 0.00 0.00 4.49
1473 6380 5.078411 ATTCTTCAGAATACAGACGCTGT 57.922 39.130 15.13 15.13 42.48 4.40
1474 6381 4.205996 CGATTCTTCAGAATACAGACGCTG 59.794 45.833 1.90 5.47 44.14 5.18
1475 6382 4.142359 ACGATTCTTCAGAATACAGACGCT 60.142 41.667 1.90 0.00 44.14 5.07
1476 6383 4.106197 ACGATTCTTCAGAATACAGACGC 58.894 43.478 1.90 0.00 44.14 5.19
1477 6384 4.434909 CGACGATTCTTCAGAATACAGACG 59.565 45.833 1.90 4.45 44.14 4.18
1478 6385 5.333513 ACGACGATTCTTCAGAATACAGAC 58.666 41.667 0.00 0.00 44.14 3.51
1479 6386 5.562506 ACGACGATTCTTCAGAATACAGA 57.437 39.130 0.00 0.00 44.14 3.41
1480 6387 4.434909 CGACGACGATTCTTCAGAATACAG 59.565 45.833 0.00 0.94 44.14 2.74
1481 6388 4.142752 ACGACGACGATTCTTCAGAATACA 60.143 41.667 15.32 0.00 44.14 2.29
1741 6764 5.169295 CGGAGGGAGTAGAAGTTAAAACAG 58.831 45.833 0.00 0.00 0.00 3.16
1758 6781 5.418209 AGATATAGTATTTTCGGACGGAGGG 59.582 44.000 0.00 0.00 0.00 4.30
1759 6782 6.512342 AGATATAGTATTTTCGGACGGAGG 57.488 41.667 0.00 0.00 0.00 4.30
1760 6783 8.489990 TCTAGATATAGTATTTTCGGACGGAG 57.510 38.462 0.00 0.00 0.00 4.63
1806 6829 9.098355 CCTTCGTCTAGAAATATTTGTCATCAA 57.902 33.333 5.17 0.00 38.57 2.57
1807 6830 7.710907 CCCTTCGTCTAGAAATATTTGTCATCA 59.289 37.037 5.17 0.00 38.57 3.07
1808 6831 7.926555 TCCCTTCGTCTAGAAATATTTGTCATC 59.073 37.037 5.17 0.00 38.57 2.92
1809 6832 7.792032 TCCCTTCGTCTAGAAATATTTGTCAT 58.208 34.615 5.17 0.00 38.57 3.06
1810 6833 7.177832 TCCCTTCGTCTAGAAATATTTGTCA 57.822 36.000 5.17 0.00 38.57 3.58
1811 6834 8.664211 ATTCCCTTCGTCTAGAAATATTTGTC 57.336 34.615 5.17 0.00 38.57 3.18
1812 6835 9.543783 GTATTCCCTTCGTCTAGAAATATTTGT 57.456 33.333 5.17 4.02 38.57 2.83
1813 6836 8.700644 CGTATTCCCTTCGTCTAGAAATATTTG 58.299 37.037 5.17 0.00 38.57 2.32
1814 6837 8.419442 ACGTATTCCCTTCGTCTAGAAATATTT 58.581 33.333 0.00 0.00 38.57 1.40
1815 6838 7.949434 ACGTATTCCCTTCGTCTAGAAATATT 58.051 34.615 0.00 0.00 38.57 1.28
1816 6839 7.521871 ACGTATTCCCTTCGTCTAGAAATAT 57.478 36.000 0.00 0.00 38.57 1.28
1817 6840 6.949352 ACGTATTCCCTTCGTCTAGAAATA 57.051 37.500 0.00 0.00 38.57 1.40
1818 6841 5.848833 ACGTATTCCCTTCGTCTAGAAAT 57.151 39.130 0.00 0.00 38.57 2.17
1819 6842 5.882557 AGTACGTATTCCCTTCGTCTAGAAA 59.117 40.000 0.00 0.00 38.57 2.52
1820 6843 5.431765 AGTACGTATTCCCTTCGTCTAGAA 58.568 41.667 0.00 0.00 38.69 2.10
1821 6844 5.028549 AGTACGTATTCCCTTCGTCTAGA 57.971 43.478 0.00 0.00 38.69 2.43
1822 6845 5.988561 ACTAGTACGTATTCCCTTCGTCTAG 59.011 44.000 0.00 3.49 38.92 2.43
1823 6846 5.918608 ACTAGTACGTATTCCCTTCGTCTA 58.081 41.667 0.00 0.00 38.69 2.59
1824 6847 4.775236 ACTAGTACGTATTCCCTTCGTCT 58.225 43.478 0.00 0.00 38.69 4.18
1825 6848 6.793492 ATACTAGTACGTATTCCCTTCGTC 57.207 41.667 4.31 0.00 38.69 4.20
1826 6849 7.420800 CAAATACTAGTACGTATTCCCTTCGT 58.579 38.462 4.31 0.00 38.71 3.85
1827 6850 6.860023 CCAAATACTAGTACGTATTCCCTTCG 59.140 42.308 4.31 0.00 38.71 3.79
1828 6851 7.150640 CCCAAATACTAGTACGTATTCCCTTC 58.849 42.308 4.31 0.00 38.71 3.46
1829 6852 6.612863 ACCCAAATACTAGTACGTATTCCCTT 59.387 38.462 4.31 0.00 38.71 3.95
1830 6853 6.138967 ACCCAAATACTAGTACGTATTCCCT 58.861 40.000 4.31 0.00 38.71 4.20
1831 6854 6.410942 ACCCAAATACTAGTACGTATTCCC 57.589 41.667 4.31 0.00 38.71 3.97
1832 6855 6.145535 CGACCCAAATACTAGTACGTATTCC 58.854 44.000 4.31 0.00 38.71 3.01
1833 6856 5.626955 GCGACCCAAATACTAGTACGTATTC 59.373 44.000 4.31 0.00 38.71 1.75
1834 6857 5.507985 GGCGACCCAAATACTAGTACGTATT 60.508 44.000 4.31 0.00 40.73 1.89
1835 6858 4.022849 GGCGACCCAAATACTAGTACGTAT 60.023 45.833 4.31 0.00 0.00 3.06
1836 6859 3.315191 GGCGACCCAAATACTAGTACGTA 59.685 47.826 4.31 0.00 0.00 3.57
1837 6860 2.099756 GGCGACCCAAATACTAGTACGT 59.900 50.000 4.31 0.00 0.00 3.57
1838 6861 2.735823 GGCGACCCAAATACTAGTACG 58.264 52.381 4.31 3.67 0.00 3.67
1871 6894 8.221944 TCCAGTCATTAAAGGGAAACTAAAAGA 58.778 33.333 0.00 0.00 0.00 2.52
1872 6895 8.404107 TCCAGTCATTAAAGGGAAACTAAAAG 57.596 34.615 0.00 0.00 0.00 2.27
1873 6896 8.950007 ATCCAGTCATTAAAGGGAAACTAAAA 57.050 30.769 0.00 0.00 0.00 1.52
1893 6920 3.324556 ACCCAAAACCAAACATGATCCAG 59.675 43.478 0.00 0.00 0.00 3.86
1981 7010 5.955961 AGCATAACAAAATTTAGGGGCAT 57.044 34.783 0.00 0.00 0.00 4.40
2043 7072 2.362077 GGTCAAGTTGGAACAGTGCAAT 59.638 45.455 2.34 0.00 42.39 3.56
2044 7073 1.748493 GGTCAAGTTGGAACAGTGCAA 59.252 47.619 2.34 0.00 42.39 4.08
2045 7074 1.388547 GGTCAAGTTGGAACAGTGCA 58.611 50.000 2.34 0.00 42.39 4.57
2046 7075 0.307760 CGGTCAAGTTGGAACAGTGC 59.692 55.000 2.34 0.00 42.39 4.40
2047 7076 0.307760 GCGGTCAAGTTGGAACAGTG 59.692 55.000 2.34 0.00 42.39 3.66
2048 7077 0.180406 AGCGGTCAAGTTGGAACAGT 59.820 50.000 2.34 0.00 42.39 3.55
2049 7078 0.868406 GAGCGGTCAAGTTGGAACAG 59.132 55.000 10.30 0.00 42.39 3.16
2050 7079 0.878523 CGAGCGGTCAAGTTGGAACA 60.879 55.000 15.89 0.00 0.00 3.18
2051 7080 1.566018 CCGAGCGGTCAAGTTGGAAC 61.566 60.000 15.89 0.00 0.00 3.62
2052 7081 1.301401 CCGAGCGGTCAAGTTGGAA 60.301 57.895 15.89 0.00 0.00 3.53
2053 7082 2.342279 CCGAGCGGTCAAGTTGGA 59.658 61.111 15.89 0.00 0.00 3.53
2054 7083 2.742372 CCCGAGCGGTCAAGTTGG 60.742 66.667 15.89 6.96 0.00 3.77
2055 7084 2.030562 ACCCGAGCGGTCAAGTTG 59.969 61.111 15.89 0.00 43.58 3.16
2056 7085 2.030562 CACCCGAGCGGTCAAGTT 59.969 61.111 15.89 0.00 43.58 2.66
2057 7086 2.915659 TCACCCGAGCGGTCAAGT 60.916 61.111 15.89 8.06 43.58 3.16
2058 7087 2.432628 GTCACCCGAGCGGTCAAG 60.433 66.667 15.89 7.37 43.58 3.02
2059 7088 3.998672 GGTCACCCGAGCGGTCAA 61.999 66.667 15.89 0.00 43.58 3.18
2079 7108 4.663444 CGAGATTGGATCGCCTCC 57.337 61.111 0.00 0.00 45.19 4.30
2084 7113 1.951130 CGGTGGCGAGATTGGATCG 60.951 63.158 0.00 0.00 43.00 3.69
2085 7114 2.247437 GCGGTGGCGAGATTGGATC 61.247 63.158 0.00 0.00 0.00 3.36
2086 7115 2.203070 GCGGTGGCGAGATTGGAT 60.203 61.111 0.00 0.00 0.00 3.41
2087 7116 3.664025 CTGCGGTGGCGAGATTGGA 62.664 63.158 0.00 0.00 44.10 3.53
2088 7117 3.197790 CTGCGGTGGCGAGATTGG 61.198 66.667 0.00 0.00 44.10 3.16
2089 7118 3.197790 CCTGCGGTGGCGAGATTG 61.198 66.667 0.00 0.00 44.10 2.67
2102 7131 4.792804 GTCTGGAGGGCTGCCTGC 62.793 72.222 19.68 10.57 41.94 4.85
2103 7132 3.007920 AGTCTGGAGGGCTGCCTG 61.008 66.667 19.68 4.43 0.00 4.85
2104 7133 2.686835 GAGTCTGGAGGGCTGCCT 60.687 66.667 19.68 4.34 0.00 4.75
2105 7134 3.791586 GGAGTCTGGAGGGCTGCC 61.792 72.222 11.05 11.05 0.00 4.85
2106 7135 2.686835 AGGAGTCTGGAGGGCTGC 60.687 66.667 0.00 0.00 0.00 5.25
2107 7136 0.690411 ATGAGGAGTCTGGAGGGCTG 60.690 60.000 0.00 0.00 0.00 4.85
2108 7137 0.398381 GATGAGGAGTCTGGAGGGCT 60.398 60.000 0.00 0.00 0.00 5.19
2109 7138 0.398381 AGATGAGGAGTCTGGAGGGC 60.398 60.000 0.00 0.00 0.00 5.19
2110 7139 1.703411 GAGATGAGGAGTCTGGAGGG 58.297 60.000 0.00 0.00 0.00 4.30
2111 7140 1.317613 CGAGATGAGGAGTCTGGAGG 58.682 60.000 0.00 0.00 0.00 4.30
2112 7141 0.667993 GCGAGATGAGGAGTCTGGAG 59.332 60.000 0.00 0.00 0.00 3.86
2113 7142 0.753479 GGCGAGATGAGGAGTCTGGA 60.753 60.000 0.00 0.00 0.00 3.86
2114 7143 1.739049 GGCGAGATGAGGAGTCTGG 59.261 63.158 0.00 0.00 0.00 3.86
2115 7144 1.358402 CGGCGAGATGAGGAGTCTG 59.642 63.158 0.00 0.00 0.00 3.51
2116 7145 2.485795 GCGGCGAGATGAGGAGTCT 61.486 63.158 12.98 0.00 0.00 3.24
2117 7146 2.026879 GCGGCGAGATGAGGAGTC 59.973 66.667 12.98 0.00 0.00 3.36
2118 7147 3.532155 GGCGGCGAGATGAGGAGT 61.532 66.667 12.98 0.00 0.00 3.85
2119 7148 4.292178 GGGCGGCGAGATGAGGAG 62.292 72.222 12.98 0.00 0.00 3.69
2121 7150 4.598894 CTGGGCGGCGAGATGAGG 62.599 72.222 16.21 0.00 0.00 3.86
2157 7186 4.735132 TCCTCGAACCCGCGCAAG 62.735 66.667 8.75 0.00 35.37 4.01
2163 7192 4.796231 CCGCAGTCCTCGAACCCG 62.796 72.222 0.00 0.00 37.07 5.28
2165 7194 3.665675 ATGCCGCAGTCCTCGAACC 62.666 63.158 0.00 0.00 0.00 3.62
2166 7195 2.125512 ATGCCGCAGTCCTCGAAC 60.126 61.111 0.00 0.00 0.00 3.95
2167 7196 2.184322 GATGCCGCAGTCCTCGAA 59.816 61.111 0.00 0.00 0.00 3.71
2168 7197 3.068064 TGATGCCGCAGTCCTCGA 61.068 61.111 0.00 0.00 0.00 4.04
2169 7198 2.584418 CTGATGCCGCAGTCCTCG 60.584 66.667 0.00 0.00 0.00 4.63
2170 7199 2.202987 CCTGATGCCGCAGTCCTC 60.203 66.667 0.00 0.00 34.06 3.71
2171 7200 3.790437 CCCTGATGCCGCAGTCCT 61.790 66.667 0.00 0.00 34.06 3.85
2173 7202 4.783621 TGCCCTGATGCCGCAGTC 62.784 66.667 0.00 0.00 34.06 3.51
2174 7203 3.650298 AATGCCCTGATGCCGCAGT 62.650 57.895 0.00 0.00 35.66 4.40
2175 7204 1.952102 AAAATGCCCTGATGCCGCAG 61.952 55.000 0.00 0.00 35.66 5.18
2176 7205 1.947597 GAAAATGCCCTGATGCCGCA 61.948 55.000 0.00 0.00 36.84 5.69
2177 7206 1.227060 GAAAATGCCCTGATGCCGC 60.227 57.895 0.00 0.00 0.00 6.53
2178 7207 0.819582 AAGAAAATGCCCTGATGCCG 59.180 50.000 0.00 0.00 0.00 5.69
2179 7208 2.498885 AGAAAGAAAATGCCCTGATGCC 59.501 45.455 0.00 0.00 0.00 4.40
2180 7209 3.446516 AGAGAAAGAAAATGCCCTGATGC 59.553 43.478 0.00 0.00 0.00 3.91
2181 7210 4.142227 CCAGAGAAAGAAAATGCCCTGATG 60.142 45.833 0.00 0.00 0.00 3.07
2182 7211 4.021916 CCAGAGAAAGAAAATGCCCTGAT 58.978 43.478 0.00 0.00 0.00 2.90
2183 7212 3.424703 CCAGAGAAAGAAAATGCCCTGA 58.575 45.455 0.00 0.00 0.00 3.86
2184 7213 2.094338 GCCAGAGAAAGAAAATGCCCTG 60.094 50.000 0.00 0.00 0.00 4.45
2185 7214 2.174360 GCCAGAGAAAGAAAATGCCCT 58.826 47.619 0.00 0.00 0.00 5.19
2186 7215 1.135286 CGCCAGAGAAAGAAAATGCCC 60.135 52.381 0.00 0.00 0.00 5.36
2187 7216 1.541588 ACGCCAGAGAAAGAAAATGCC 59.458 47.619 0.00 0.00 0.00 4.40
2188 7217 2.589014 CACGCCAGAGAAAGAAAATGC 58.411 47.619 0.00 0.00 0.00 3.56
2189 7218 2.813754 TCCACGCCAGAGAAAGAAAATG 59.186 45.455 0.00 0.00 0.00 2.32
2190 7219 3.140325 TCCACGCCAGAGAAAGAAAAT 57.860 42.857 0.00 0.00 0.00 1.82
2191 7220 2.631160 TCCACGCCAGAGAAAGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
2192 7221 2.615493 GGATCCACGCCAGAGAAAGAAA 60.615 50.000 6.95 0.00 0.00 2.52
2193 7222 1.066143 GGATCCACGCCAGAGAAAGAA 60.066 52.381 6.95 0.00 0.00 2.52
2194 7223 0.537188 GGATCCACGCCAGAGAAAGA 59.463 55.000 6.95 0.00 0.00 2.52
2195 7224 0.462759 GGGATCCACGCCAGAGAAAG 60.463 60.000 15.23 0.00 0.00 2.62
2196 7225 1.602237 GGGATCCACGCCAGAGAAA 59.398 57.895 15.23 0.00 0.00 2.52
2197 7226 2.721167 CGGGATCCACGCCAGAGAA 61.721 63.158 15.23 0.00 0.00 2.87
2198 7227 3.147595 CGGGATCCACGCCAGAGA 61.148 66.667 15.23 0.00 0.00 3.10
2199 7228 3.432051 GACGGGATCCACGCCAGAG 62.432 68.421 15.23 0.00 34.00 3.35
2200 7229 3.458163 GACGGGATCCACGCCAGA 61.458 66.667 15.23 0.00 34.00 3.86
2201 7230 4.873129 CGACGGGATCCACGCCAG 62.873 72.222 15.23 6.21 34.00 4.85
2205 7234 4.508128 CCACCGACGGGATCCACG 62.508 72.222 20.00 16.74 36.97 4.94
2206 7235 4.832608 GCCACCGACGGGATCCAC 62.833 72.222 20.00 1.85 36.97 4.02
2230 7259 2.907897 GATCCACCCGACGCCTTCAG 62.908 65.000 0.00 0.00 0.00 3.02
2231 7260 3.000819 ATCCACCCGACGCCTTCA 61.001 61.111 0.00 0.00 0.00 3.02
2232 7261 2.202892 GATCCACCCGACGCCTTC 60.203 66.667 0.00 0.00 0.00 3.46
2233 7262 3.000819 TGATCCACCCGACGCCTT 61.001 61.111 0.00 0.00 0.00 4.35
2234 7263 3.461773 CTGATCCACCCGACGCCT 61.462 66.667 0.00 0.00 0.00 5.52
2237 7266 4.129737 ACGCTGATCCACCCGACG 62.130 66.667 0.00 0.00 0.00 5.12
2238 7267 2.509336 CACGCTGATCCACCCGAC 60.509 66.667 0.00 0.00 0.00 4.79
2239 7268 3.770040 CCACGCTGATCCACCCGA 61.770 66.667 0.00 0.00 0.00 5.14
2242 7271 4.451150 TCGCCACGCTGATCCACC 62.451 66.667 0.00 0.00 0.00 4.61
2243 7272 2.279502 TAGTCGCCACGCTGATCCAC 62.280 60.000 0.00 0.00 0.00 4.02
2244 7273 2.049767 TAGTCGCCACGCTGATCCA 61.050 57.895 0.00 0.00 0.00 3.41
2245 7274 1.589196 GTAGTCGCCACGCTGATCC 60.589 63.158 0.00 0.00 0.00 3.36
2246 7275 0.867753 CTGTAGTCGCCACGCTGATC 60.868 60.000 0.00 0.00 0.00 2.92
2247 7276 1.139734 CTGTAGTCGCCACGCTGAT 59.860 57.895 0.00 0.00 0.00 2.90
2248 7277 2.566529 CTGTAGTCGCCACGCTGA 59.433 61.111 0.00 0.00 0.00 4.26
2249 7278 3.181967 GCTGTAGTCGCCACGCTG 61.182 66.667 0.00 0.00 0.00 5.18
2250 7279 3.633094 CTGCTGTAGTCGCCACGCT 62.633 63.158 0.00 0.00 0.00 5.07
2251 7280 3.181967 CTGCTGTAGTCGCCACGC 61.182 66.667 0.00 0.00 0.00 5.34
2252 7281 2.507102 CCTGCTGTAGTCGCCACG 60.507 66.667 0.00 0.00 0.00 4.94
2253 7282 2.125512 CCCTGCTGTAGTCGCCAC 60.126 66.667 0.00 0.00 0.00 5.01
2254 7283 4.082523 GCCCTGCTGTAGTCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
2255 7284 3.775654 AGCCCTGCTGTAGTCGCC 61.776 66.667 0.00 0.00 37.57 5.54
2277 7306 4.263572 TGGTGCCGGTTGAGGGTG 62.264 66.667 1.90 0.00 0.00 4.61
2278 7307 3.953775 CTGGTGCCGGTTGAGGGT 61.954 66.667 1.90 0.00 0.00 4.34
2279 7308 2.876368 GATCTGGTGCCGGTTGAGGG 62.876 65.000 1.90 0.00 0.00 4.30
2280 7309 1.450312 GATCTGGTGCCGGTTGAGG 60.450 63.158 1.90 0.00 0.00 3.86
2281 7310 1.450312 GGATCTGGTGCCGGTTGAG 60.450 63.158 1.90 0.00 0.00 3.02
2282 7311 2.184020 CTGGATCTGGTGCCGGTTGA 62.184 60.000 1.90 0.00 0.00 3.18
2283 7312 1.746615 CTGGATCTGGTGCCGGTTG 60.747 63.158 1.90 0.00 0.00 3.77
2284 7313 1.903877 CTCTGGATCTGGTGCCGGTT 61.904 60.000 1.90 0.00 32.28 4.44
2285 7314 2.284625 TCTGGATCTGGTGCCGGT 60.285 61.111 1.90 0.00 32.28 5.28
2286 7315 2.503061 CTCTGGATCTGGTGCCGG 59.497 66.667 0.00 0.00 0.00 6.13
2287 7316 2.202987 GCTCTGGATCTGGTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
2288 7317 2.202987 CGCTCTGGATCTGGTGCC 60.203 66.667 0.00 0.00 0.00 5.01
2289 7318 2.202987 CCGCTCTGGATCTGGTGC 60.203 66.667 0.00 0.00 42.00 5.01
2290 7319 2.362369 ACCCGCTCTGGATCTGGTG 61.362 63.158 0.00 0.00 42.00 4.17
2291 7320 2.039624 ACCCGCTCTGGATCTGGT 59.960 61.111 0.00 0.00 42.00 4.00
2292 7321 2.503061 CACCCGCTCTGGATCTGG 59.497 66.667 0.00 0.00 42.00 3.86
2293 7322 2.303549 GACCACCCGCTCTGGATCTG 62.304 65.000 0.00 0.00 42.00 2.90
2294 7323 2.039624 ACCACCCGCTCTGGATCT 59.960 61.111 0.00 0.00 42.00 2.75
2295 7324 2.359169 TGACCACCCGCTCTGGATC 61.359 63.158 0.00 0.00 42.00 3.36
2296 7325 2.284625 TGACCACCCGCTCTGGAT 60.285 61.111 0.00 0.00 42.00 3.41
2297 7326 3.311110 GTGACCACCCGCTCTGGA 61.311 66.667 0.00 0.00 42.00 3.86
2298 7327 4.394712 GGTGACCACCCGCTCTGG 62.395 72.222 7.95 0.00 45.68 3.86
2307 7336 1.227060 GGTATACCGCGGTGACCAC 60.227 63.158 38.97 29.59 36.25 4.16
2308 7337 2.425569 GGGTATACCGCGGTGACCA 61.426 63.158 41.42 27.53 37.25 4.02
2309 7338 2.129785 AGGGTATACCGCGGTGACC 61.130 63.158 37.62 37.62 46.96 4.02
2310 7339 1.066918 CAGGGTATACCGCGGTGAC 59.933 63.158 40.02 33.04 46.96 3.67
2311 7340 1.380246 ACAGGGTATACCGCGGTGA 60.380 57.895 40.02 24.99 46.96 4.02
2312 7341 1.227147 CACAGGGTATACCGCGGTG 60.227 63.158 40.02 23.60 46.96 4.94
2313 7342 1.380246 TCACAGGGTATACCGCGGT 60.380 57.895 36.01 36.01 46.96 5.68
2314 7343 1.362717 CTCACAGGGTATACCGCGG 59.637 63.158 26.86 26.86 46.96 6.46
2315 7344 1.362717 CCTCACAGGGTATACCGCG 59.637 63.158 15.80 11.26 46.96 6.46
2316 7345 1.069258 GCCTCACAGGGTATACCGC 59.931 63.158 15.80 7.80 46.96 5.68
2317 7346 1.362717 CGCCTCACAGGGTATACCG 59.637 63.158 15.80 5.57 46.96 4.02
2318 7347 0.757935 TCCGCCTCACAGGGTATACC 60.758 60.000 13.99 13.99 35.37 2.73
2319 7348 0.674534 CTCCGCCTCACAGGGTATAC 59.325 60.000 0.00 0.00 35.37 1.47
2320 7349 0.260816 ACTCCGCCTCACAGGGTATA 59.739 55.000 0.00 0.00 35.37 1.47
2321 7350 0.617820 AACTCCGCCTCACAGGGTAT 60.618 55.000 0.00 0.00 35.37 2.73
2322 7351 0.834687 AAACTCCGCCTCACAGGGTA 60.835 55.000 0.00 0.00 35.37 3.69
2323 7352 2.113243 GAAACTCCGCCTCACAGGGT 62.113 60.000 0.00 0.00 35.37 4.34
2324 7353 1.376037 GAAACTCCGCCTCACAGGG 60.376 63.158 0.00 0.00 35.37 4.45
2325 7354 0.036010 ATGAAACTCCGCCTCACAGG 60.036 55.000 0.00 0.00 38.80 4.00
2326 7355 1.081892 CATGAAACTCCGCCTCACAG 58.918 55.000 0.00 0.00 0.00 3.66
2327 7356 0.955428 GCATGAAACTCCGCCTCACA 60.955 55.000 0.00 0.00 0.00 3.58
2328 7357 1.796796 GCATGAAACTCCGCCTCAC 59.203 57.895 0.00 0.00 0.00 3.51
2329 7358 1.741401 CGCATGAAACTCCGCCTCA 60.741 57.895 0.00 0.00 0.00 3.86
2330 7359 2.464459 CCGCATGAAACTCCGCCTC 61.464 63.158 0.00 0.00 0.00 4.70
2331 7360 2.436646 CCGCATGAAACTCCGCCT 60.437 61.111 0.00 0.00 0.00 5.52
2332 7361 3.508840 CCCGCATGAAACTCCGCC 61.509 66.667 0.00 0.00 0.00 6.13
2333 7362 3.508840 CCCCGCATGAAACTCCGC 61.509 66.667 0.00 0.00 0.00 5.54
2334 7363 1.369091 CTTCCCCGCATGAAACTCCG 61.369 60.000 0.00 0.00 0.00 4.63
2335 7364 0.322546 ACTTCCCCGCATGAAACTCC 60.323 55.000 0.00 0.00 0.00 3.85
2336 7365 1.087501 GACTTCCCCGCATGAAACTC 58.912 55.000 0.00 0.00 0.00 3.01
2337 7366 0.673644 CGACTTCCCCGCATGAAACT 60.674 55.000 0.00 0.00 0.00 2.66
2338 7367 0.672401 TCGACTTCCCCGCATGAAAC 60.672 55.000 0.00 0.00 0.00 2.78
2339 7368 0.391130 CTCGACTTCCCCGCATGAAA 60.391 55.000 0.00 0.00 0.00 2.69
2340 7369 1.218047 CTCGACTTCCCCGCATGAA 59.782 57.895 0.00 0.00 0.00 2.57
2341 7370 1.667154 CTCTCGACTTCCCCGCATGA 61.667 60.000 0.00 0.00 0.00 3.07
2342 7371 1.227089 CTCTCGACTTCCCCGCATG 60.227 63.158 0.00 0.00 0.00 4.06
2343 7372 3.082579 GCTCTCGACTTCCCCGCAT 62.083 63.158 0.00 0.00 0.00 4.73
2344 7373 3.760035 GCTCTCGACTTCCCCGCA 61.760 66.667 0.00 0.00 0.00 5.69
2345 7374 3.708220 CTGCTCTCGACTTCCCCGC 62.708 68.421 0.00 0.00 0.00 6.13
2346 7375 2.492090 CTGCTCTCGACTTCCCCG 59.508 66.667 0.00 0.00 0.00 5.73
2347 7376 2.185608 GCTGCTCTCGACTTCCCC 59.814 66.667 0.00 0.00 0.00 4.81
2348 7377 1.153667 CTGCTGCTCTCGACTTCCC 60.154 63.158 0.00 0.00 0.00 3.97
2349 7378 1.809209 GCTGCTGCTCTCGACTTCC 60.809 63.158 8.53 0.00 36.03 3.46
2350 7379 1.809209 GGCTGCTGCTCTCGACTTC 60.809 63.158 15.64 0.00 39.59 3.01
2351 7380 2.264166 GGCTGCTGCTCTCGACTT 59.736 61.111 15.64 0.00 39.59 3.01
2352 7381 2.993840 TGGCTGCTGCTCTCGACT 60.994 61.111 15.64 0.00 39.59 4.18
2353 7382 2.508887 CTGGCTGCTGCTCTCGAC 60.509 66.667 15.64 0.00 39.59 4.20
2354 7383 3.767806 CCTGGCTGCTGCTCTCGA 61.768 66.667 15.64 0.00 39.59 4.04
2355 7384 4.834453 CCCTGGCTGCTGCTCTCG 62.834 72.222 15.64 1.09 39.59 4.04
2394 7423 2.537560 CCATGGTGGCTTCGATCGC 61.538 63.158 11.09 0.00 0.00 4.58
2395 7424 3.723172 CCATGGTGGCTTCGATCG 58.277 61.111 9.36 9.36 0.00 3.69
2414 7443 4.657824 AACCTCACGTCACCGCCG 62.658 66.667 0.00 0.00 37.70 6.46
2415 7444 3.041940 CAACCTCACGTCACCGCC 61.042 66.667 0.00 0.00 37.70 6.13
2416 7445 3.041940 CCAACCTCACGTCACCGC 61.042 66.667 0.00 0.00 37.70 5.68
2417 7446 2.357034 CCCAACCTCACGTCACCG 60.357 66.667 0.00 0.00 40.83 4.94
2418 7447 1.597027 CACCCAACCTCACGTCACC 60.597 63.158 0.00 0.00 0.00 4.02
2419 7448 1.597027 CCACCCAACCTCACGTCAC 60.597 63.158 0.00 0.00 0.00 3.67
2420 7449 2.067605 ACCACCCAACCTCACGTCA 61.068 57.895 0.00 0.00 0.00 4.35
2421 7450 1.597027 CACCACCCAACCTCACGTC 60.597 63.158 0.00 0.00 0.00 4.34
2422 7451 2.508928 CACCACCCAACCTCACGT 59.491 61.111 0.00 0.00 0.00 4.49
2423 7452 2.281484 CCACCACCCAACCTCACG 60.281 66.667 0.00 0.00 0.00 4.35
2424 7453 1.528309 CACCACCACCCAACCTCAC 60.528 63.158 0.00 0.00 0.00 3.51
2425 7454 2.762554 CCACCACCACCCAACCTCA 61.763 63.158 0.00 0.00 0.00 3.86
2426 7455 2.115266 CCACCACCACCCAACCTC 59.885 66.667 0.00 0.00 0.00 3.85
2427 7456 2.698406 ACCACCACCACCCAACCT 60.698 61.111 0.00 0.00 0.00 3.50
2428 7457 2.520741 CACCACCACCACCCAACC 60.521 66.667 0.00 0.00 0.00 3.77
2429 7458 2.520741 CCACCACCACCACCCAAC 60.521 66.667 0.00 0.00 0.00 3.77
2430 7459 4.531426 GCCACCACCACCACCCAA 62.531 66.667 0.00 0.00 0.00 4.12
2444 7473 4.007644 CTGAGTGGAGTGCCGCCA 62.008 66.667 0.00 0.00 46.09 5.69
2447 7476 3.978723 CTCGCTGAGTGGAGTGCCG 62.979 68.421 0.00 0.00 36.79 5.69
2448 7477 2.125753 CTCGCTGAGTGGAGTGCC 60.126 66.667 0.00 0.00 0.00 5.01
2449 7478 2.125753 CCTCGCTGAGTGGAGTGC 60.126 66.667 0.00 0.00 35.58 4.40
2450 7479 2.279069 ACCCTCGCTGAGTGGAGTG 61.279 63.158 14.82 0.00 35.58 3.51
2451 7480 2.118513 ACCCTCGCTGAGTGGAGT 59.881 61.111 14.82 0.00 35.58 3.85
2452 7481 2.219325 GACACCCTCGCTGAGTGGAG 62.219 65.000 14.82 11.30 35.79 3.86
2453 7482 2.203640 ACACCCTCGCTGAGTGGA 60.204 61.111 14.82 0.00 35.79 4.02
2454 7483 2.262915 GACACCCTCGCTGAGTGG 59.737 66.667 0.00 7.72 35.79 4.00
2455 7484 2.126307 CGACACCCTCGCTGAGTG 60.126 66.667 5.15 0.00 35.06 3.51
2456 7485 3.374402 CCGACACCCTCGCTGAGT 61.374 66.667 5.15 0.00 41.46 3.41
2457 7486 4.803426 GCCGACACCCTCGCTGAG 62.803 72.222 0.00 0.00 41.46 3.35
2468 7497 4.377708 ATCTGCACGCAGCCGACA 62.378 61.111 14.25 0.00 44.83 4.35
2469 7498 3.857854 CATCTGCACGCAGCCGAC 61.858 66.667 14.25 0.00 44.83 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.