Multiple sequence alignment - TraesCS2D01G452200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G452200 chr2D 100.000 2914 0 0 638 3551 561851142 561854055 0.000000e+00 5382
1 TraesCS2D01G452200 chr2D 85.543 1667 144 54 768 2391 561909501 561907889 0.000000e+00 1653
2 TraesCS2D01G452200 chr2D 100.000 452 0 0 1 452 561850505 561850956 0.000000e+00 835
3 TraesCS2D01G452200 chr2D 94.373 391 20 2 3161 3551 292665496 292665108 1.820000e-167 599
4 TraesCS2D01G452200 chr2D 90.933 375 11 2 3177 3551 375628984 375629335 1.920000e-132 483
5 TraesCS2D01G452200 chr2B 94.043 2535 87 23 659 3162 670852805 670855306 0.000000e+00 3786
6 TraesCS2D01G452200 chr2B 85.783 1674 136 51 768 2377 671040429 671038794 0.000000e+00 1679
7 TraesCS2D01G452200 chr2B 85.088 456 54 6 1 452 670852340 670852785 1.500000e-123 453
8 TraesCS2D01G452200 chr2B 86.398 397 43 6 2471 2863 4912963 4912574 1.180000e-114 424
9 TraesCS2D01G452200 chr2A 96.033 1840 62 4 638 2470 701496648 701498483 0.000000e+00 2983
10 TraesCS2D01G452200 chr2A 85.156 1664 159 44 768 2380 701868717 701867091 0.000000e+00 1624
11 TraesCS2D01G452200 chr2A 94.359 390 21 1 3162 3551 772876363 772875975 6.560000e-167 597
12 TraesCS2D01G452200 chr2A 88.722 399 33 7 2473 2864 688582481 688582088 8.920000e-131 477
13 TraesCS2D01G452200 chr2A 88.586 403 33 8 2470 2864 774444500 774444103 8.920000e-131 477
14 TraesCS2D01G452200 chr2A 93.993 283 17 0 170 452 701496271 701496553 2.530000e-116 429
15 TraesCS2D01G452200 chr2A 84.960 379 43 10 1269 1634 628063372 628062995 4.330000e-99 372
16 TraesCS2D01G452200 chr2A 92.090 177 14 0 1 177 701494402 701494578 2.120000e-62 250
17 TraesCS2D01G452200 chr4A 93.295 701 32 9 2470 3162 564696056 564695363 0.000000e+00 1020
18 TraesCS2D01G452200 chr4A 93.404 470 17 8 2467 2925 635361154 635360688 0.000000e+00 684
19 TraesCS2D01G452200 chr3A 92.450 702 32 11 2470 3162 713317771 713318460 0.000000e+00 983
20 TraesCS2D01G452200 chr3A 87.218 399 40 7 2474 2864 552533508 552533113 9.050000e-121 444
21 TraesCS2D01G452200 chr5D 96.667 390 13 0 3162 3551 423461869 423461480 0.000000e+00 649
22 TraesCS2D01G452200 chr1D 96.667 390 12 1 3163 3551 458775575 458775964 0.000000e+00 647
23 TraesCS2D01G452200 chr6D 96.649 388 10 2 3166 3551 28026746 28026360 2.990000e-180 641
24 TraesCS2D01G452200 chr6D 90.278 288 24 3 2879 3162 60508534 60508821 1.200000e-99 374
25 TraesCS2D01G452200 chr1A 94.643 392 21 0 3160 3551 540392681 540393072 3.030000e-170 608
26 TraesCS2D01G452200 chr1A 89.583 288 26 3 2879 3162 551302539 551302826 2.610000e-96 363
27 TraesCS2D01G452200 chr7D 93.112 392 26 1 3160 3551 406901699 406901309 1.110000e-159 573
28 TraesCS2D01G452200 chr7D 97.500 200 5 0 3163 3362 88150579 88150778 3.390000e-90 342
29 TraesCS2D01G452200 chr7D 97.541 122 3 0 3427 3548 88150802 88150923 3.590000e-50 209
30 TraesCS2D01G452200 chr3B 88.337 403 34 7 2470 2864 541218738 541219135 4.150000e-129 472
31 TraesCS2D01G452200 chr3B 89.895 287 26 2 2879 3162 242889112 242888826 2.010000e-97 366
32 TraesCS2D01G452200 chr7B 87.313 402 42 5 2471 2864 702853045 702852645 5.410000e-123 451
33 TraesCS2D01G452200 chr7B 95.455 132 6 0 1657 1788 506596659 506596790 9.990000e-51 211
34 TraesCS2D01G452200 chr7A 90.278 288 24 3 2879 3162 63572895 63573182 1.200000e-99 374
35 TraesCS2D01G452200 chr4D 89.965 289 23 4 2879 3162 54384059 54383772 5.600000e-98 368
36 TraesCS2D01G452200 chr5B 89.347 291 26 4 2879 3165 476171861 476172150 9.370000e-96 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G452200 chr2D 561850505 561854055 3550 False 3108.500000 5382 100.000000 1 3551 2 chr2D.!!$F2 3550
1 TraesCS2D01G452200 chr2D 561907889 561909501 1612 True 1653.000000 1653 85.543000 768 2391 1 chr2D.!!$R2 1623
2 TraesCS2D01G452200 chr2B 670852340 670855306 2966 False 2119.500000 3786 89.565500 1 3162 2 chr2B.!!$F1 3161
3 TraesCS2D01G452200 chr2B 671038794 671040429 1635 True 1679.000000 1679 85.783000 768 2377 1 chr2B.!!$R2 1609
4 TraesCS2D01G452200 chr2A 701867091 701868717 1626 True 1624.000000 1624 85.156000 768 2380 1 chr2A.!!$R3 1612
5 TraesCS2D01G452200 chr2A 701494402 701498483 4081 False 1220.666667 2983 94.038667 1 2470 3 chr2A.!!$F1 2469
6 TraesCS2D01G452200 chr4A 564695363 564696056 693 True 1020.000000 1020 93.295000 2470 3162 1 chr4A.!!$R1 692
7 TraesCS2D01G452200 chr3A 713317771 713318460 689 False 983.000000 983 92.450000 2470 3162 1 chr3A.!!$F1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 2751 0.027979 CGCATCCGTGTGCAAATAGG 59.972 55.0 9.51 0.0 45.3 2.57 F
1228 2991 0.609957 CCAAGTTGCTGGCTGGATCA 60.610 55.0 0.00 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 3677 0.835941 AGGTTAGCTGCATCAGGGAG 59.164 55.0 1.02 0.0 38.13 4.30 R
3203 5026 0.027586 GACTTGTGTGACCAACGTGC 59.972 55.0 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 1.210155 GATGTTGGACCACGCTTGC 59.790 57.895 0.00 0.00 0.00 4.01
107 108 3.250323 CCGATGCTGCGACTGACG 61.250 66.667 0.00 0.00 45.66 4.35
110 111 1.446099 GATGCTGCGACTGACGGAA 60.446 57.895 1.32 0.00 42.47 4.30
150 151 2.017049 ACACCAAAAGCTATGATCGGC 58.983 47.619 1.14 0.00 0.00 5.54
181 1882 2.280797 TGCAACCGGTGAGAGCAC 60.281 61.111 8.52 0.00 44.39 4.40
182 1883 2.280797 GCAACCGGTGAGAGCACA 60.281 61.111 8.52 0.00 46.96 4.57
202 1903 2.030562 CTGGAAACCGTGACGCCT 59.969 61.111 0.00 0.00 0.00 5.52
311 2012 1.154035 CCGCCGATTTGCTGAAACC 60.154 57.895 0.00 0.00 0.00 3.27
421 2126 2.249557 GACGACGAGGAACGCTAGCA 62.250 60.000 16.45 0.00 46.94 3.49
997 2750 3.514510 CGCATCCGTGTGCAAATAG 57.485 52.632 9.51 0.00 45.30 1.73
998 2751 0.027979 CGCATCCGTGTGCAAATAGG 59.972 55.000 9.51 0.00 45.30 2.57
1113 2872 1.136891 TGCATATCCTCGTGACACAGG 59.863 52.381 14.48 14.48 0.00 4.00
1172 2935 1.378778 AGGTCCCTCTCGTTCTCCG 60.379 63.158 0.00 0.00 38.13 4.63
1203 2966 6.500684 TTCTTGATACTGGAATCTTGTTGC 57.499 37.500 0.00 0.00 0.00 4.17
1213 2976 0.877071 ATCTTGTTGCGCTGACCAAG 59.123 50.000 9.73 14.65 36.49 3.61
1218 2981 1.823470 TTGCGCTGACCAAGTTGCT 60.823 52.632 9.73 0.00 32.53 3.91
1228 2991 0.609957 CCAAGTTGCTGGCTGGATCA 60.610 55.000 0.00 0.00 0.00 2.92
1239 3002 4.641396 CTGGCTGGATCAATTATAACCGA 58.359 43.478 0.00 0.00 0.00 4.69
1586 3392 4.787280 CTGGGGGTCCTCCTCGCT 62.787 72.222 9.90 0.00 39.51 4.93
1871 3677 0.673437 CGCTCTTCTCCCTGATCCTC 59.327 60.000 0.00 0.00 0.00 3.71
1886 3692 0.262876 TCCTCTCCCTGATGCAGCTA 59.737 55.000 2.53 0.00 0.00 3.32
1919 3725 2.157421 GCTCAAGAGCGACACCTTG 58.843 57.895 6.28 0.00 45.29 3.61
2517 4329 0.393077 GTACCGGCATAGCATCCACT 59.607 55.000 0.00 0.00 0.00 4.00
2654 4474 3.694043 TGCAGTACTATTTGCAGTGGA 57.306 42.857 3.57 0.00 44.72 4.02
2658 4478 4.731773 GCAGTACTATTTGCAGTGGAATGC 60.732 45.833 0.00 0.00 46.68 3.56
2659 4479 3.947834 AGTACTATTTGCAGTGGAATGCC 59.052 43.478 0.00 0.00 45.91 4.40
2692 4514 2.508526 GGCATCTCTCCTCTCTCTCTC 58.491 57.143 0.00 0.00 0.00 3.20
2693 4515 2.107204 GGCATCTCTCCTCTCTCTCTCT 59.893 54.545 0.00 0.00 0.00 3.10
2743 4565 8.655651 TTTTGTTTACATTTTTAGAAGGCCAG 57.344 30.769 5.01 0.00 0.00 4.85
3063 4885 8.402472 CAAAGGAGTGACTGTAATGTGTTTTTA 58.598 33.333 0.00 0.00 0.00 1.52
3156 4979 8.577296 TCAATTTCCCGATTGTAATGTGTTTTA 58.423 29.630 0.00 0.00 38.04 1.52
3162 4985 8.240682 TCCCGATTGTAATGTGTTTTATGAAAG 58.759 33.333 0.00 0.00 0.00 2.62
3163 4986 8.240682 CCCGATTGTAATGTGTTTTATGAAAGA 58.759 33.333 0.00 0.00 0.00 2.52
3164 4987 9.061610 CCGATTGTAATGTGTTTTATGAAAGAC 57.938 33.333 3.56 3.56 38.96 3.01
3176 4999 3.740044 ATGAAAGACATAAACGCACCG 57.260 42.857 0.00 0.00 37.46 4.94
3177 5000 2.485903 TGAAAGACATAAACGCACCGT 58.514 42.857 0.00 0.00 43.97 4.83
3178 5001 4.691685 TATGAAAGACATAAACGCACCGTT 59.308 37.500 0.00 0.00 44.48 4.44
3186 5009 3.405464 ACGCACCGTTTGTCACTG 58.595 55.556 0.00 0.00 36.35 3.66
3187 5010 1.153529 ACGCACCGTTTGTCACTGA 60.154 52.632 0.00 0.00 36.35 3.41
3188 5011 0.741574 ACGCACCGTTTGTCACTGAA 60.742 50.000 0.00 0.00 36.35 3.02
3189 5012 0.315869 CGCACCGTTTGTCACTGAAC 60.316 55.000 0.00 0.00 0.00 3.18
3190 5013 1.014352 GCACCGTTTGTCACTGAACT 58.986 50.000 0.00 0.00 0.00 3.01
3191 5014 1.003866 GCACCGTTTGTCACTGAACTC 60.004 52.381 0.00 0.00 0.00 3.01
3192 5015 2.550978 CACCGTTTGTCACTGAACTCT 58.449 47.619 0.00 0.00 0.00 3.24
3193 5016 2.540101 CACCGTTTGTCACTGAACTCTC 59.460 50.000 0.00 0.00 0.00 3.20
3194 5017 1.787155 CCGTTTGTCACTGAACTCTCG 59.213 52.381 0.00 0.00 0.00 4.04
3195 5018 1.190323 CGTTTGTCACTGAACTCTCGC 59.810 52.381 0.00 0.00 0.00 5.03
3196 5019 2.201732 GTTTGTCACTGAACTCTCGCA 58.798 47.619 0.00 0.00 0.00 5.10
3197 5020 2.595124 TTGTCACTGAACTCTCGCAA 57.405 45.000 0.00 0.00 0.00 4.85
3198 5021 2.140065 TGTCACTGAACTCTCGCAAG 57.860 50.000 0.00 0.00 0.00 4.01
3209 5032 4.673403 TCGCAAGATGAGCACGTT 57.327 50.000 0.00 0.00 45.01 3.99
3210 5033 2.153039 TCGCAAGATGAGCACGTTG 58.847 52.632 0.00 0.00 45.01 4.10
3211 5034 1.133253 CGCAAGATGAGCACGTTGG 59.867 57.895 0.00 0.00 43.02 3.77
3212 5035 1.568612 CGCAAGATGAGCACGTTGGT 61.569 55.000 0.00 0.00 43.02 3.67
3213 5036 0.166814 GCAAGATGAGCACGTTGGTC 59.833 55.000 9.35 9.35 44.54 4.02
3218 5041 4.118480 GAGCACGTTGGTCACACA 57.882 55.556 10.83 0.00 43.79 3.72
3219 5042 2.389386 GAGCACGTTGGTCACACAA 58.611 52.632 10.83 0.00 43.79 3.33
3220 5043 0.304705 GAGCACGTTGGTCACACAAG 59.695 55.000 10.83 0.00 43.79 3.16
3221 5044 0.392461 AGCACGTTGGTCACACAAGT 60.392 50.000 0.00 0.00 0.00 3.16
3222 5045 0.027586 GCACGTTGGTCACACAAGTC 59.972 55.000 0.00 0.00 0.00 3.01
3223 5046 1.651987 CACGTTGGTCACACAAGTCT 58.348 50.000 0.00 0.00 0.00 3.24
3224 5047 1.593006 CACGTTGGTCACACAAGTCTC 59.407 52.381 0.00 0.00 0.00 3.36
3225 5048 1.206132 ACGTTGGTCACACAAGTCTCA 59.794 47.619 0.00 0.00 0.00 3.27
3226 5049 2.276201 CGTTGGTCACACAAGTCTCAA 58.724 47.619 0.00 0.00 0.00 3.02
3227 5050 2.675844 CGTTGGTCACACAAGTCTCAAA 59.324 45.455 0.00 0.00 0.00 2.69
3228 5051 3.126171 CGTTGGTCACACAAGTCTCAAAA 59.874 43.478 0.00 0.00 0.00 2.44
3229 5052 4.201910 CGTTGGTCACACAAGTCTCAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
3230 5053 4.898829 TGGTCACACAAGTCTCAAAATG 57.101 40.909 0.00 0.00 0.00 2.32
3231 5054 4.269183 TGGTCACACAAGTCTCAAAATGT 58.731 39.130 0.00 0.00 0.00 2.71
3232 5055 4.096231 TGGTCACACAAGTCTCAAAATGTG 59.904 41.667 3.41 3.41 46.52 3.21
3233 5056 4.498009 GGTCACACAAGTCTCAAAATGTGG 60.498 45.833 9.28 0.00 45.65 4.17
3234 5057 4.335315 GTCACACAAGTCTCAAAATGTGGA 59.665 41.667 9.28 1.93 45.65 4.02
3235 5058 4.576053 TCACACAAGTCTCAAAATGTGGAG 59.424 41.667 9.28 2.38 45.65 3.86
3236 5059 4.576053 CACACAAGTCTCAAAATGTGGAGA 59.424 41.667 9.28 0.00 45.65 3.71
3237 5060 5.066375 CACACAAGTCTCAAAATGTGGAGAA 59.934 40.000 9.28 0.00 45.65 2.87
3238 5061 5.829924 ACACAAGTCTCAAAATGTGGAGAAT 59.170 36.000 9.28 0.00 45.65 2.40
3239 5062 6.322201 ACACAAGTCTCAAAATGTGGAGAATT 59.678 34.615 0.00 0.00 45.93 2.17
3241 5064 5.972107 AGTCTCAAAATGTGGAGAATTGG 57.028 39.130 0.00 0.00 41.48 3.16
3242 5065 5.388654 AGTCTCAAAATGTGGAGAATTGGT 58.611 37.500 0.00 0.00 41.48 3.67
3243 5066 5.474876 AGTCTCAAAATGTGGAGAATTGGTC 59.525 40.000 0.00 0.00 41.48 4.02
3244 5067 5.241506 GTCTCAAAATGTGGAGAATTGGTCA 59.758 40.000 0.00 0.00 41.48 4.02
3245 5068 5.832595 TCTCAAAATGTGGAGAATTGGTCAA 59.167 36.000 0.00 0.00 37.23 3.18
3246 5069 6.494491 TCTCAAAATGTGGAGAATTGGTCAAT 59.506 34.615 0.00 0.00 37.23 2.57
3247 5070 7.015487 TCTCAAAATGTGGAGAATTGGTCAATT 59.985 33.333 8.48 8.48 43.14 2.32
3248 5071 7.507829 TCAAAATGTGGAGAATTGGTCAATTT 58.492 30.769 9.88 1.88 40.77 1.82
3249 5072 7.441760 TCAAAATGTGGAGAATTGGTCAATTTG 59.558 33.333 9.88 0.00 40.77 2.32
3250 5073 4.870123 TGTGGAGAATTGGTCAATTTGG 57.130 40.909 9.88 0.00 40.77 3.28
3251 5074 4.222336 TGTGGAGAATTGGTCAATTTGGT 58.778 39.130 9.88 0.00 40.77 3.67
3252 5075 4.653341 TGTGGAGAATTGGTCAATTTGGTT 59.347 37.500 9.88 0.00 40.77 3.67
3253 5076 5.130145 TGTGGAGAATTGGTCAATTTGGTTT 59.870 36.000 9.88 0.00 40.77 3.27
3254 5077 5.466393 GTGGAGAATTGGTCAATTTGGTTTG 59.534 40.000 9.88 0.00 40.77 2.93
3255 5078 4.452114 GGAGAATTGGTCAATTTGGTTTGC 59.548 41.667 9.88 0.00 40.77 3.68
3256 5079 5.294734 AGAATTGGTCAATTTGGTTTGCT 57.705 34.783 9.88 0.00 40.77 3.91
3257 5080 5.683681 AGAATTGGTCAATTTGGTTTGCTT 58.316 33.333 9.88 0.00 40.77 3.91
3258 5081 6.121590 AGAATTGGTCAATTTGGTTTGCTTT 58.878 32.000 9.88 0.00 40.77 3.51
3259 5082 7.278875 AGAATTGGTCAATTTGGTTTGCTTTA 58.721 30.769 9.88 0.00 40.77 1.85
3260 5083 7.938490 AGAATTGGTCAATTTGGTTTGCTTTAT 59.062 29.630 9.88 0.00 40.77 1.40
3261 5084 6.857777 TTGGTCAATTTGGTTTGCTTTATG 57.142 33.333 0.00 0.00 0.00 1.90
3262 5085 6.166984 TGGTCAATTTGGTTTGCTTTATGA 57.833 33.333 0.00 0.00 0.00 2.15
3263 5086 6.222389 TGGTCAATTTGGTTTGCTTTATGAG 58.778 36.000 0.00 0.00 0.00 2.90
3275 5098 3.674423 GCTTTATGAGCGAATGTGTCAC 58.326 45.455 0.00 0.00 42.46 3.67
3276 5099 3.372206 GCTTTATGAGCGAATGTGTCACT 59.628 43.478 4.27 0.00 42.46 3.41
3277 5100 4.142816 GCTTTATGAGCGAATGTGTCACTT 60.143 41.667 4.27 0.00 42.46 3.16
3278 5101 5.530519 TTTATGAGCGAATGTGTCACTTC 57.469 39.130 4.27 5.06 0.00 3.01
3279 5102 1.795768 TGAGCGAATGTGTCACTTCC 58.204 50.000 4.27 1.52 0.00 3.46
3280 5103 1.079503 GAGCGAATGTGTCACTTCCC 58.920 55.000 4.27 0.00 0.00 3.97
3281 5104 0.687354 AGCGAATGTGTCACTTCCCT 59.313 50.000 4.27 1.39 0.00 4.20
3282 5105 0.798776 GCGAATGTGTCACTTCCCTG 59.201 55.000 4.27 0.00 0.00 4.45
3283 5106 1.878102 GCGAATGTGTCACTTCCCTGT 60.878 52.381 4.27 0.00 0.00 4.00
3284 5107 2.494059 CGAATGTGTCACTTCCCTGTT 58.506 47.619 4.27 0.00 0.00 3.16
3285 5108 2.224079 CGAATGTGTCACTTCCCTGTTG 59.776 50.000 4.27 0.00 0.00 3.33
3286 5109 1.609208 ATGTGTCACTTCCCTGTTGC 58.391 50.000 4.27 0.00 0.00 4.17
3287 5110 0.813610 TGTGTCACTTCCCTGTTGCG 60.814 55.000 4.27 0.00 0.00 4.85
3288 5111 0.531974 GTGTCACTTCCCTGTTGCGA 60.532 55.000 0.00 0.00 0.00 5.10
3289 5112 0.249868 TGTCACTTCCCTGTTGCGAG 60.250 55.000 0.00 0.00 0.00 5.03
3290 5113 1.301716 TCACTTCCCTGTTGCGAGC 60.302 57.895 0.00 0.00 0.00 5.03
3291 5114 2.032681 ACTTCCCTGTTGCGAGCC 59.967 61.111 0.00 0.00 0.00 4.70
3292 5115 3.121030 CTTCCCTGTTGCGAGCCG 61.121 66.667 0.00 0.00 0.00 5.52
3293 5116 3.883744 CTTCCCTGTTGCGAGCCGT 62.884 63.158 0.00 0.00 0.00 5.68
3294 5117 3.469863 TTCCCTGTTGCGAGCCGTT 62.470 57.895 0.00 0.00 0.00 4.44
3295 5118 2.047655 CCCTGTTGCGAGCCGTTA 60.048 61.111 0.00 0.00 0.00 3.18
3296 5119 2.388232 CCCTGTTGCGAGCCGTTAC 61.388 63.158 0.00 0.00 0.00 2.50
3297 5120 2.726691 CCTGTTGCGAGCCGTTACG 61.727 63.158 0.00 0.00 0.00 3.18
3318 5141 3.414700 CCGACGTGGCTTGCTGAC 61.415 66.667 0.00 0.00 0.00 3.51
3319 5142 2.356313 CGACGTGGCTTGCTGACT 60.356 61.111 0.00 0.00 0.00 3.41
3320 5143 2.375766 CGACGTGGCTTGCTGACTC 61.376 63.158 0.00 0.00 0.00 3.36
3321 5144 1.300931 GACGTGGCTTGCTGACTCA 60.301 57.895 0.00 0.00 0.00 3.41
3322 5145 1.287730 GACGTGGCTTGCTGACTCAG 61.288 60.000 0.00 1.21 34.12 3.35
3331 5154 4.427394 CTGACTCAGCGTATGGCC 57.573 61.111 0.00 0.00 45.17 5.36
3332 5155 1.227380 CTGACTCAGCGTATGGCCC 60.227 63.158 0.00 0.00 45.17 5.80
3333 5156 1.960040 CTGACTCAGCGTATGGCCCA 61.960 60.000 0.00 0.00 45.17 5.36
3334 5157 1.521681 GACTCAGCGTATGGCCCAC 60.522 63.158 0.00 0.00 45.17 4.61
3335 5158 1.961180 GACTCAGCGTATGGCCCACT 61.961 60.000 0.00 0.00 45.17 4.00
3336 5159 1.522355 CTCAGCGTATGGCCCACTG 60.522 63.158 0.00 0.30 45.17 3.66
3337 5160 2.244117 CTCAGCGTATGGCCCACTGT 62.244 60.000 0.00 0.00 45.17 3.55
3338 5161 1.815421 CAGCGTATGGCCCACTGTC 60.815 63.158 0.00 0.00 45.17 3.51
3339 5162 2.267642 GCGTATGGCCCACTGTCA 59.732 61.111 0.00 0.00 34.80 3.58
3340 5163 1.815421 GCGTATGGCCCACTGTCAG 60.815 63.158 0.00 0.00 34.80 3.51
3341 5164 1.153369 CGTATGGCCCACTGTCAGG 60.153 63.158 0.00 0.00 0.00 3.86
3342 5165 1.613317 CGTATGGCCCACTGTCAGGA 61.613 60.000 0.00 0.00 0.00 3.86
3343 5166 0.839946 GTATGGCCCACTGTCAGGAT 59.160 55.000 0.00 0.00 0.00 3.24
3344 5167 2.047061 GTATGGCCCACTGTCAGGATA 58.953 52.381 0.00 0.00 0.00 2.59
3345 5168 1.595311 ATGGCCCACTGTCAGGATAA 58.405 50.000 0.00 0.00 0.00 1.75
3346 5169 1.595311 TGGCCCACTGTCAGGATAAT 58.405 50.000 0.00 0.00 0.00 1.28
3347 5170 1.922447 TGGCCCACTGTCAGGATAATT 59.078 47.619 0.00 0.00 0.00 1.40
3348 5171 2.301346 GGCCCACTGTCAGGATAATTG 58.699 52.381 4.53 0.00 0.00 2.32
3349 5172 2.357154 GGCCCACTGTCAGGATAATTGT 60.357 50.000 4.53 0.00 0.00 2.71
3350 5173 2.684881 GCCCACTGTCAGGATAATTGTG 59.315 50.000 4.53 0.00 0.00 3.33
3351 5174 3.622206 GCCCACTGTCAGGATAATTGTGA 60.622 47.826 4.53 0.00 0.00 3.58
3352 5175 4.588899 CCCACTGTCAGGATAATTGTGAA 58.411 43.478 4.53 0.00 0.00 3.18
3353 5176 4.637534 CCCACTGTCAGGATAATTGTGAAG 59.362 45.833 4.53 0.00 0.00 3.02
3354 5177 4.637534 CCACTGTCAGGATAATTGTGAAGG 59.362 45.833 4.53 0.00 0.00 3.46
3355 5178 5.248640 CACTGTCAGGATAATTGTGAAGGT 58.751 41.667 4.53 0.00 0.00 3.50
3356 5179 5.707298 CACTGTCAGGATAATTGTGAAGGTT 59.293 40.000 4.53 0.00 0.00 3.50
3357 5180 6.207417 CACTGTCAGGATAATTGTGAAGGTTT 59.793 38.462 4.53 0.00 0.00 3.27
3358 5181 6.777580 ACTGTCAGGATAATTGTGAAGGTTTT 59.222 34.615 4.53 0.00 0.00 2.43
3359 5182 7.287696 ACTGTCAGGATAATTGTGAAGGTTTTT 59.712 33.333 4.53 0.00 0.00 1.94
3384 5207 0.826062 CAAATTGTGCATCCCCTCCC 59.174 55.000 0.00 0.00 0.00 4.30
3385 5208 0.712380 AAATTGTGCATCCCCTCCCT 59.288 50.000 0.00 0.00 0.00 4.20
3386 5209 0.032813 AATTGTGCATCCCCTCCCTG 60.033 55.000 0.00 0.00 0.00 4.45
3387 5210 1.941403 ATTGTGCATCCCCTCCCTGG 61.941 60.000 0.00 0.00 0.00 4.45
3388 5211 3.017581 GTGCATCCCCTCCCTGGT 61.018 66.667 0.00 0.00 0.00 4.00
3389 5212 2.692368 TGCATCCCCTCCCTGGTC 60.692 66.667 0.00 0.00 0.00 4.02
3390 5213 2.692368 GCATCCCCTCCCTGGTCA 60.692 66.667 0.00 0.00 0.00 4.02
3391 5214 2.308722 GCATCCCCTCCCTGGTCAA 61.309 63.158 0.00 0.00 0.00 3.18
3392 5215 1.863155 GCATCCCCTCCCTGGTCAAA 61.863 60.000 0.00 0.00 0.00 2.69
3393 5216 0.704076 CATCCCCTCCCTGGTCAAAA 59.296 55.000 0.00 0.00 0.00 2.44
3394 5217 1.288932 CATCCCCTCCCTGGTCAAAAT 59.711 52.381 0.00 0.00 0.00 1.82
3395 5218 0.999712 TCCCCTCCCTGGTCAAAATC 59.000 55.000 0.00 0.00 0.00 2.17
3396 5219 0.033109 CCCCTCCCTGGTCAAAATCC 60.033 60.000 0.00 0.00 0.00 3.01
3397 5220 0.033109 CCCTCCCTGGTCAAAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
3398 5221 0.033109 CCTCCCTGGTCAAAATCCCC 60.033 60.000 0.00 0.00 0.00 4.81
3399 5222 0.704076 CTCCCTGGTCAAAATCCCCA 59.296 55.000 0.00 0.00 0.00 4.96
3400 5223 1.077005 CTCCCTGGTCAAAATCCCCAA 59.923 52.381 0.00 0.00 0.00 4.12
3401 5224 1.721691 TCCCTGGTCAAAATCCCCAAT 59.278 47.619 0.00 0.00 0.00 3.16
3402 5225 2.113414 TCCCTGGTCAAAATCCCCAATT 59.887 45.455 0.00 0.00 0.00 2.32
3403 5226 2.501316 CCCTGGTCAAAATCCCCAATTC 59.499 50.000 0.00 0.00 0.00 2.17
3404 5227 3.172339 CCTGGTCAAAATCCCCAATTCA 58.828 45.455 0.00 0.00 0.00 2.57
3405 5228 3.196254 CCTGGTCAAAATCCCCAATTCAG 59.804 47.826 0.00 0.00 0.00 3.02
3406 5229 2.566724 TGGTCAAAATCCCCAATTCAGC 59.433 45.455 0.00 0.00 0.00 4.26
3407 5230 2.093500 GGTCAAAATCCCCAATTCAGCC 60.093 50.000 0.00 0.00 0.00 4.85
3408 5231 2.093500 GTCAAAATCCCCAATTCAGCCC 60.093 50.000 0.00 0.00 0.00 5.19
3409 5232 1.134729 CAAAATCCCCAATTCAGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
3410 5233 0.334676 AAATCCCCAATTCAGCCCGA 59.665 50.000 0.00 0.00 0.00 5.14
3411 5234 0.557729 AATCCCCAATTCAGCCCGAT 59.442 50.000 0.00 0.00 0.00 4.18
3412 5235 0.557729 ATCCCCAATTCAGCCCGATT 59.442 50.000 0.00 0.00 0.00 3.34
3413 5236 0.106719 TCCCCAATTCAGCCCGATTC 60.107 55.000 0.00 0.00 0.00 2.52
3414 5237 1.447317 CCCCAATTCAGCCCGATTCG 61.447 60.000 0.00 0.00 0.00 3.34
3434 5257 2.992124 GGGAAAACCCTAGCTCTCTC 57.008 55.000 0.00 0.00 34.51 3.20
3435 5258 2.473070 GGGAAAACCCTAGCTCTCTCT 58.527 52.381 0.00 0.00 34.51 3.10
3436 5259 2.432874 GGGAAAACCCTAGCTCTCTCTC 59.567 54.545 0.00 0.00 34.51 3.20
3437 5260 2.100087 GGAAAACCCTAGCTCTCTCTCG 59.900 54.545 0.00 0.00 0.00 4.04
3438 5261 2.810870 AAACCCTAGCTCTCTCTCGA 57.189 50.000 0.00 0.00 0.00 4.04
3439 5262 3.306472 AAACCCTAGCTCTCTCTCGAT 57.694 47.619 0.00 0.00 0.00 3.59
3440 5263 2.561478 ACCCTAGCTCTCTCTCGATC 57.439 55.000 0.00 0.00 0.00 3.69
3441 5264 2.054799 ACCCTAGCTCTCTCTCGATCT 58.945 52.381 0.00 0.00 0.00 2.75
3442 5265 2.038557 ACCCTAGCTCTCTCTCGATCTC 59.961 54.545 0.00 0.00 0.00 2.75
3443 5266 2.038426 CCCTAGCTCTCTCTCGATCTCA 59.962 54.545 0.00 0.00 0.00 3.27
3444 5267 3.067106 CCTAGCTCTCTCTCGATCTCAC 58.933 54.545 0.00 0.00 0.00 3.51
3445 5268 1.967319 AGCTCTCTCTCGATCTCACC 58.033 55.000 0.00 0.00 0.00 4.02
3446 5269 1.490490 AGCTCTCTCTCGATCTCACCT 59.510 52.381 0.00 0.00 0.00 4.00
3447 5270 2.092429 AGCTCTCTCTCGATCTCACCTT 60.092 50.000 0.00 0.00 0.00 3.50
3448 5271 2.290641 GCTCTCTCTCGATCTCACCTTC 59.709 54.545 0.00 0.00 0.00 3.46
3449 5272 3.808728 CTCTCTCTCGATCTCACCTTCT 58.191 50.000 0.00 0.00 0.00 2.85
3450 5273 3.804036 TCTCTCTCGATCTCACCTTCTC 58.196 50.000 0.00 0.00 0.00 2.87
3451 5274 2.878406 CTCTCTCGATCTCACCTTCTCC 59.122 54.545 0.00 0.00 0.00 3.71
3452 5275 2.507886 TCTCTCGATCTCACCTTCTCCT 59.492 50.000 0.00 0.00 0.00 3.69
3453 5276 2.618241 CTCTCGATCTCACCTTCTCCTG 59.382 54.545 0.00 0.00 0.00 3.86
3454 5277 2.025793 TCTCGATCTCACCTTCTCCTGT 60.026 50.000 0.00 0.00 0.00 4.00
3455 5278 2.357637 CTCGATCTCACCTTCTCCTGTC 59.642 54.545 0.00 0.00 0.00 3.51
3456 5279 2.025793 TCGATCTCACCTTCTCCTGTCT 60.026 50.000 0.00 0.00 0.00 3.41
3457 5280 2.357637 CGATCTCACCTTCTCCTGTCTC 59.642 54.545 0.00 0.00 0.00 3.36
3458 5281 2.223803 TCTCACCTTCTCCTGTCTCC 57.776 55.000 0.00 0.00 0.00 3.71
3459 5282 1.429299 TCTCACCTTCTCCTGTCTCCA 59.571 52.381 0.00 0.00 0.00 3.86
3460 5283 1.824230 CTCACCTTCTCCTGTCTCCAG 59.176 57.143 0.00 0.00 38.50 3.86
3461 5284 1.429299 TCACCTTCTCCTGTCTCCAGA 59.571 52.381 0.00 0.00 41.50 3.86
3462 5285 2.043664 TCACCTTCTCCTGTCTCCAGAT 59.956 50.000 0.00 0.00 41.50 2.90
3463 5286 2.430332 CACCTTCTCCTGTCTCCAGATC 59.570 54.545 0.00 0.00 41.50 2.75
3464 5287 2.314549 ACCTTCTCCTGTCTCCAGATCT 59.685 50.000 0.00 0.00 41.50 2.75
3465 5288 2.694628 CCTTCTCCTGTCTCCAGATCTG 59.305 54.545 16.24 16.24 41.50 2.90
3466 5289 1.774110 TCTCCTGTCTCCAGATCTGC 58.226 55.000 17.76 4.16 41.50 4.26
3467 5290 0.752054 CTCCTGTCTCCAGATCTGCC 59.248 60.000 17.76 5.23 41.50 4.85
3468 5291 0.041684 TCCTGTCTCCAGATCTGCCA 59.958 55.000 17.76 9.36 41.50 4.92
3469 5292 1.129917 CCTGTCTCCAGATCTGCCAT 58.870 55.000 17.76 0.00 41.50 4.40
3470 5293 2.091111 TCCTGTCTCCAGATCTGCCATA 60.091 50.000 17.76 1.48 41.50 2.74
3471 5294 2.299582 CCTGTCTCCAGATCTGCCATAG 59.700 54.545 17.76 10.97 41.50 2.23
3472 5295 1.690893 TGTCTCCAGATCTGCCATAGC 59.309 52.381 17.76 5.42 40.48 2.97
3473 5296 1.001860 GTCTCCAGATCTGCCATAGCC 59.998 57.143 17.76 0.00 38.69 3.93
3474 5297 0.037512 CTCCAGATCTGCCATAGCCG 60.038 60.000 17.76 1.09 38.69 5.52
3475 5298 0.760567 TCCAGATCTGCCATAGCCGT 60.761 55.000 17.76 0.00 38.69 5.68
3476 5299 0.320247 CCAGATCTGCCATAGCCGTC 60.320 60.000 17.76 0.00 38.69 4.79
3477 5300 0.665670 CAGATCTGCCATAGCCGTCG 60.666 60.000 10.38 0.00 38.69 5.12
3478 5301 2.024319 GATCTGCCATAGCCGTCGC 61.024 63.158 0.00 0.00 38.69 5.19
3479 5302 3.521529 ATCTGCCATAGCCGTCGCC 62.522 63.158 0.00 0.00 38.69 5.54
3483 5306 3.261951 CCATAGCCGTCGCCGTTG 61.262 66.667 0.00 0.00 34.57 4.10
3484 5307 2.508439 CATAGCCGTCGCCGTTGT 60.508 61.111 0.00 0.00 34.57 3.32
3485 5308 2.202703 ATAGCCGTCGCCGTTGTC 60.203 61.111 0.00 0.00 34.57 3.18
3486 5309 4.764336 TAGCCGTCGCCGTTGTCG 62.764 66.667 0.00 0.00 34.57 4.35
3489 5312 4.986587 CCGTCGCCGTTGTCGTCA 62.987 66.667 0.00 0.00 35.01 4.35
3490 5313 3.749373 CGTCGCCGTTGTCGTCAC 61.749 66.667 0.00 0.00 35.01 3.67
3491 5314 3.400590 GTCGCCGTTGTCGTCACC 61.401 66.667 0.00 0.00 35.01 4.02
3492 5315 3.598715 TCGCCGTTGTCGTCACCT 61.599 61.111 0.00 0.00 35.01 4.00
3493 5316 3.103911 CGCCGTTGTCGTCACCTC 61.104 66.667 0.00 0.00 35.01 3.85
3494 5317 3.103911 GCCGTTGTCGTCACCTCG 61.104 66.667 0.00 0.00 35.01 4.63
3495 5318 3.103911 CCGTTGTCGTCACCTCGC 61.104 66.667 0.00 0.00 35.01 5.03
3496 5319 2.050351 CGTTGTCGTCACCTCGCT 60.050 61.111 0.00 0.00 0.00 4.93
3497 5320 2.081212 CGTTGTCGTCACCTCGCTC 61.081 63.158 0.00 0.00 0.00 5.03
3498 5321 2.081212 GTTGTCGTCACCTCGCTCG 61.081 63.158 0.00 0.00 0.00 5.03
3499 5322 2.255881 TTGTCGTCACCTCGCTCGA 61.256 57.895 0.00 0.00 0.00 4.04
3500 5323 2.098680 GTCGTCACCTCGCTCGAG 59.901 66.667 8.45 8.45 41.63 4.04
3501 5324 2.047560 TCGTCACCTCGCTCGAGA 60.048 61.111 18.75 0.00 44.53 4.04
3502 5325 1.449778 TCGTCACCTCGCTCGAGAT 60.450 57.895 18.75 0.00 44.53 2.75
3503 5326 1.297967 CGTCACCTCGCTCGAGATG 60.298 63.158 18.75 13.71 44.53 2.90
3504 5327 1.064946 GTCACCTCGCTCGAGATGG 59.935 63.158 18.75 16.09 44.53 3.51
3505 5328 1.077716 TCACCTCGCTCGAGATGGA 60.078 57.895 18.75 8.81 44.53 3.41
3506 5329 1.064946 CACCTCGCTCGAGATGGAC 59.935 63.158 18.75 0.00 44.53 4.02
3507 5330 2.122167 ACCTCGCTCGAGATGGACC 61.122 63.158 18.75 0.00 44.53 4.46
3508 5331 2.121538 CCTCGCTCGAGATGGACCA 61.122 63.158 18.75 0.00 44.53 4.02
3509 5332 1.358402 CTCGCTCGAGATGGACCAG 59.642 63.158 18.75 0.00 44.53 4.00
3510 5333 1.378646 TCGCTCGAGATGGACCAGT 60.379 57.895 18.75 0.00 0.00 4.00
3511 5334 0.107361 TCGCTCGAGATGGACCAGTA 60.107 55.000 18.75 0.00 0.00 2.74
3512 5335 0.955178 CGCTCGAGATGGACCAGTAT 59.045 55.000 18.75 0.00 0.00 2.12
3513 5336 1.335415 CGCTCGAGATGGACCAGTATG 60.335 57.143 18.75 0.00 0.00 2.39
3514 5337 1.957177 GCTCGAGATGGACCAGTATGA 59.043 52.381 18.75 0.00 39.69 2.15
3515 5338 2.030363 GCTCGAGATGGACCAGTATGAG 60.030 54.545 18.75 6.30 39.69 2.90
3516 5339 2.556189 CTCGAGATGGACCAGTATGAGG 59.444 54.545 6.58 0.00 39.69 3.86
3517 5340 1.615883 CGAGATGGACCAGTATGAGGG 59.384 57.143 0.00 0.00 39.69 4.30
3518 5341 2.753168 CGAGATGGACCAGTATGAGGGA 60.753 54.545 0.00 0.00 39.69 4.20
3519 5342 2.896685 GAGATGGACCAGTATGAGGGAG 59.103 54.545 0.00 0.00 39.69 4.30
3520 5343 2.520120 AGATGGACCAGTATGAGGGAGA 59.480 50.000 0.00 0.00 39.69 3.71
3521 5344 2.461300 TGGACCAGTATGAGGGAGAG 57.539 55.000 0.00 0.00 39.69 3.20
3522 5345 1.930204 TGGACCAGTATGAGGGAGAGA 59.070 52.381 0.00 0.00 39.69 3.10
3523 5346 2.091610 TGGACCAGTATGAGGGAGAGAG 60.092 54.545 0.00 0.00 39.69 3.20
3524 5347 1.960689 GACCAGTATGAGGGAGAGAGC 59.039 57.143 0.00 0.00 39.69 4.09
3525 5348 1.573376 ACCAGTATGAGGGAGAGAGCT 59.427 52.381 0.00 0.00 39.69 4.09
3526 5349 1.962807 CCAGTATGAGGGAGAGAGCTG 59.037 57.143 0.00 0.00 39.69 4.24
3527 5350 1.962807 CAGTATGAGGGAGAGAGCTGG 59.037 57.143 0.00 0.00 39.69 4.85
3528 5351 0.678950 GTATGAGGGAGAGAGCTGGC 59.321 60.000 0.00 0.00 0.00 4.85
3529 5352 0.262876 TATGAGGGAGAGAGCTGGCA 59.737 55.000 0.00 0.00 0.00 4.92
3530 5353 1.049855 ATGAGGGAGAGAGCTGGCAG 61.050 60.000 10.94 10.94 0.00 4.85
3531 5354 3.082701 AGGGAGAGAGCTGGCAGC 61.083 66.667 31.56 31.56 42.84 5.25
3532 5355 4.173924 GGGAGAGAGCTGGCAGCC 62.174 72.222 34.33 24.84 43.77 4.85
3533 5356 4.527583 GGAGAGAGCTGGCAGCCG 62.528 72.222 34.33 1.08 43.77 5.52
3534 5357 4.527583 GAGAGAGCTGGCAGCCGG 62.528 72.222 34.33 17.00 43.77 6.13
3536 5359 4.527583 GAGAGCTGGCAGCCGGAG 62.528 72.222 34.33 9.65 43.77 4.63
3538 5361 4.087892 GAGCTGGCAGCCGGAGAA 62.088 66.667 34.33 0.00 43.77 2.87
3539 5362 4.400961 AGCTGGCAGCCGGAGAAC 62.401 66.667 34.33 5.93 43.77 3.01
3540 5363 4.704833 GCTGGCAGCCGGAGAACA 62.705 66.667 28.87 0.00 34.48 3.18
3541 5364 2.435586 CTGGCAGCCGGAGAACAG 60.436 66.667 16.28 3.65 29.82 3.16
3542 5365 3.965539 CTGGCAGCCGGAGAACAGG 62.966 68.421 16.28 0.00 29.82 4.00
3543 5366 4.785453 GGCAGCCGGAGAACAGGG 62.785 72.222 5.05 0.00 32.13 4.45
3544 5367 3.706373 GCAGCCGGAGAACAGGGA 61.706 66.667 5.05 0.00 32.13 4.20
3545 5368 2.581354 CAGCCGGAGAACAGGGAG 59.419 66.667 5.05 0.00 32.13 4.30
3546 5369 2.685380 AGCCGGAGAACAGGGAGG 60.685 66.667 5.05 0.00 32.13 4.30
3547 5370 3.787001 GCCGGAGAACAGGGAGGG 61.787 72.222 5.05 0.00 32.13 4.30
3548 5371 2.284699 CCGGAGAACAGGGAGGGT 60.285 66.667 0.00 0.00 0.00 4.34
3549 5372 1.001248 CCGGAGAACAGGGAGGGTA 59.999 63.158 0.00 0.00 0.00 3.69
3550 5373 1.043673 CCGGAGAACAGGGAGGGTAG 61.044 65.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.283793 GTCGCAGTTGCAGCATTGT 59.716 52.632 2.55 0.00 42.21 2.71
6 7 0.318107 GTTGTCGCAGTTGCAGCATT 60.318 50.000 2.55 0.00 42.21 3.56
47 48 2.023414 TTGTCAGTCCCAGCGTCGTT 62.023 55.000 0.00 0.00 0.00 3.85
90 91 3.250323 CGTCAGTCGCAGCATCGG 61.250 66.667 0.00 0.00 0.00 4.18
107 108 1.467920 CACTTCCAGCATCCCTTTCC 58.532 55.000 0.00 0.00 0.00 3.13
110 111 1.000396 GCCACTTCCAGCATCCCTT 60.000 57.895 0.00 0.00 0.00 3.95
150 151 1.603678 GGTTGCAGCATTGTGGTTGAG 60.604 52.381 2.05 0.00 0.00 3.02
181 1882 1.497278 CGTCACGGTTTCCAGCATG 59.503 57.895 0.00 0.00 0.00 4.06
182 1883 2.325082 GCGTCACGGTTTCCAGCAT 61.325 57.895 0.00 0.00 0.00 3.79
202 1903 0.882484 TTTCAGCATTGACGGCGACA 60.882 50.000 16.62 12.05 36.08 4.35
653 2358 2.601504 CGCATGATGATCCTTTCGCTTG 60.602 50.000 0.00 0.00 0.00 4.01
712 2417 3.142393 CCAGATCGGTGGCCTAGG 58.858 66.667 3.67 3.67 0.00 3.02
997 2750 6.408206 CCGGGGAATACTATGATCCTATTTCC 60.408 46.154 0.00 0.00 33.61 3.13
998 2751 6.156429 ACCGGGGAATACTATGATCCTATTTC 59.844 42.308 6.32 0.00 33.61 2.17
1113 2872 2.202932 AGCATCGCCCATGTCGAC 60.203 61.111 9.11 9.11 38.88 4.20
1172 2935 8.729805 AGATTCCAGTATCAAGAATTCAAGAC 57.270 34.615 8.44 0.51 30.52 3.01
1203 2966 2.949106 CCAGCAACTTGGTCAGCG 59.051 61.111 0.00 0.00 33.38 5.18
1213 2976 5.507985 GGTTATAATTGATCCAGCCAGCAAC 60.508 44.000 0.00 0.00 0.00 4.17
1218 2981 4.698201 TCGGTTATAATTGATCCAGCCA 57.302 40.909 0.00 0.00 0.00 4.75
1428 3228 3.818787 GGCCATCCACAAGCTGCG 61.819 66.667 0.00 0.00 0.00 5.18
1479 3279 2.028876 GAAGTAGAGGAGCAGAGGGAC 58.971 57.143 0.00 0.00 0.00 4.46
1586 3392 0.973632 AGTACATCAGGTTGTCGGCA 59.026 50.000 0.00 0.00 0.00 5.69
1820 3626 4.373116 GTCAGCGCGAACCCCAGA 62.373 66.667 12.10 0.00 0.00 3.86
1871 3677 0.835941 AGGTTAGCTGCATCAGGGAG 59.164 55.000 1.02 0.00 38.13 4.30
1919 3725 1.202256 TGCATCTCCATCACGTCGTAC 60.202 52.381 0.00 0.00 0.00 3.67
2517 4329 4.393990 CACAGATCATAAAGCAGCTGAACA 59.606 41.667 20.43 0.00 0.00 3.18
2643 4463 1.892338 CGGGCATTCCACTGCAAAT 59.108 52.632 0.00 0.00 44.12 2.32
2670 4490 1.145738 GAGAGAGAGGAGAGATGCCCT 59.854 57.143 0.00 0.00 35.02 5.19
2692 4514 8.712285 ATAAAATGCATGGATTTGTTTGAGAG 57.288 30.769 23.72 0.00 0.00 3.20
2693 4515 9.504708 AAATAAAATGCATGGATTTGTTTGAGA 57.495 25.926 23.72 6.23 0.00 3.27
3136 4959 7.689446 TTCATAAAACACATTACAATCGGGA 57.311 32.000 0.00 0.00 0.00 5.14
3156 4979 3.071479 ACGGTGCGTTTATGTCTTTCAT 58.929 40.909 0.00 0.00 36.35 2.57
3169 4992 0.741574 TTCAGTGACAAACGGTGCGT 60.742 50.000 0.00 0.00 43.97 5.24
3170 4993 0.315869 GTTCAGTGACAAACGGTGCG 60.316 55.000 0.00 0.00 0.00 5.34
3171 4994 1.003866 GAGTTCAGTGACAAACGGTGC 60.004 52.381 0.00 0.00 0.00 5.01
3172 4995 2.540101 GAGAGTTCAGTGACAAACGGTG 59.460 50.000 0.00 0.00 0.00 4.94
3173 4996 2.798499 CGAGAGTTCAGTGACAAACGGT 60.798 50.000 0.00 0.00 0.00 4.83
3174 4997 1.787155 CGAGAGTTCAGTGACAAACGG 59.213 52.381 0.00 0.00 0.00 4.44
3175 4998 1.190323 GCGAGAGTTCAGTGACAAACG 59.810 52.381 0.00 0.00 0.00 3.60
3176 4999 2.201732 TGCGAGAGTTCAGTGACAAAC 58.798 47.619 0.00 0.00 0.00 2.93
3177 5000 2.595124 TGCGAGAGTTCAGTGACAAA 57.405 45.000 0.00 0.00 0.00 2.83
3178 5001 2.100749 TCTTGCGAGAGTTCAGTGACAA 59.899 45.455 0.00 0.00 0.00 3.18
3179 5002 1.681264 TCTTGCGAGAGTTCAGTGACA 59.319 47.619 0.00 0.00 0.00 3.58
3180 5003 2.423926 TCTTGCGAGAGTTCAGTGAC 57.576 50.000 0.00 0.00 0.00 3.67
3181 5004 2.558359 TCATCTTGCGAGAGTTCAGTGA 59.442 45.455 10.06 4.26 34.85 3.41
3182 5005 2.922387 CTCATCTTGCGAGAGTTCAGTG 59.078 50.000 10.06 1.76 34.85 3.66
3183 5006 2.673610 GCTCATCTTGCGAGAGTTCAGT 60.674 50.000 10.06 0.00 34.85 3.41
3184 5007 1.925847 GCTCATCTTGCGAGAGTTCAG 59.074 52.381 10.06 3.70 34.85 3.02
3185 5008 1.273327 TGCTCATCTTGCGAGAGTTCA 59.727 47.619 10.06 2.24 34.85 3.18
3186 5009 1.658095 GTGCTCATCTTGCGAGAGTTC 59.342 52.381 10.06 0.00 34.85 3.01
3187 5010 1.719600 GTGCTCATCTTGCGAGAGTT 58.280 50.000 10.06 0.00 34.85 3.01
3188 5011 0.457509 CGTGCTCATCTTGCGAGAGT 60.458 55.000 10.06 0.00 34.85 3.24
3189 5012 0.457509 ACGTGCTCATCTTGCGAGAG 60.458 55.000 10.06 2.21 34.85 3.20
3190 5013 0.038251 AACGTGCTCATCTTGCGAGA 60.038 50.000 6.01 6.01 36.09 4.04
3191 5014 0.094216 CAACGTGCTCATCTTGCGAG 59.906 55.000 0.00 0.00 0.00 5.03
3192 5015 1.291184 CCAACGTGCTCATCTTGCGA 61.291 55.000 0.00 0.00 0.00 5.10
3193 5016 1.133253 CCAACGTGCTCATCTTGCG 59.867 57.895 0.00 0.00 0.00 4.85
3194 5017 0.166814 GACCAACGTGCTCATCTTGC 59.833 55.000 0.00 0.00 0.00 4.01
3195 5018 1.195448 GTGACCAACGTGCTCATCTTG 59.805 52.381 0.00 0.00 0.00 3.02
3196 5019 1.202639 TGTGACCAACGTGCTCATCTT 60.203 47.619 0.00 0.00 0.00 2.40
3197 5020 0.392706 TGTGACCAACGTGCTCATCT 59.607 50.000 0.00 0.00 0.00 2.90
3198 5021 0.512952 GTGTGACCAACGTGCTCATC 59.487 55.000 0.00 0.00 0.00 2.92
3199 5022 0.179059 TGTGTGACCAACGTGCTCAT 60.179 50.000 0.00 0.00 0.00 2.90
3200 5023 0.391793 TTGTGTGACCAACGTGCTCA 60.392 50.000 0.00 0.00 0.00 4.26
3201 5024 0.304705 CTTGTGTGACCAACGTGCTC 59.695 55.000 0.00 0.00 0.00 4.26
3202 5025 0.392461 ACTTGTGTGACCAACGTGCT 60.392 50.000 0.00 0.00 0.00 4.40
3203 5026 0.027586 GACTTGTGTGACCAACGTGC 59.972 55.000 0.00 0.00 0.00 5.34
3204 5027 1.593006 GAGACTTGTGTGACCAACGTG 59.407 52.381 0.00 0.00 0.00 4.49
3205 5028 1.206132 TGAGACTTGTGTGACCAACGT 59.794 47.619 0.00 0.00 0.00 3.99
3206 5029 1.934589 TGAGACTTGTGTGACCAACG 58.065 50.000 0.00 0.00 0.00 4.10
3207 5030 4.695217 TTTTGAGACTTGTGTGACCAAC 57.305 40.909 0.00 0.00 0.00 3.77
3208 5031 4.704540 ACATTTTGAGACTTGTGTGACCAA 59.295 37.500 0.00 0.00 0.00 3.67
3209 5032 4.096231 CACATTTTGAGACTTGTGTGACCA 59.904 41.667 0.00 0.00 39.30 4.02
3210 5033 4.498009 CCACATTTTGAGACTTGTGTGACC 60.498 45.833 5.00 0.00 39.30 4.02
3211 5034 4.335315 TCCACATTTTGAGACTTGTGTGAC 59.665 41.667 5.00 0.00 39.30 3.67
3212 5035 4.522114 TCCACATTTTGAGACTTGTGTGA 58.478 39.130 5.00 0.00 39.30 3.58
3213 5036 4.576053 TCTCCACATTTTGAGACTTGTGTG 59.424 41.667 4.07 0.00 38.19 3.82
3214 5037 4.780815 TCTCCACATTTTGAGACTTGTGT 58.219 39.130 4.07 0.00 38.19 3.72
3215 5038 5.756195 TTCTCCACATTTTGAGACTTGTG 57.244 39.130 0.00 0.00 37.35 3.33
3216 5039 6.239120 CCAATTCTCCACATTTTGAGACTTGT 60.239 38.462 14.45 0.00 42.28 3.16
3217 5040 6.154445 CCAATTCTCCACATTTTGAGACTTG 58.846 40.000 10.76 10.76 42.90 3.16
3218 5041 5.835280 ACCAATTCTCCACATTTTGAGACTT 59.165 36.000 0.00 0.00 37.35 3.01
3219 5042 5.388654 ACCAATTCTCCACATTTTGAGACT 58.611 37.500 0.00 0.00 37.35 3.24
3220 5043 5.241506 TGACCAATTCTCCACATTTTGAGAC 59.758 40.000 0.00 0.00 37.35 3.36
3221 5044 5.384336 TGACCAATTCTCCACATTTTGAGA 58.616 37.500 0.00 0.00 35.89 3.27
3222 5045 5.710513 TGACCAATTCTCCACATTTTGAG 57.289 39.130 0.00 0.00 0.00 3.02
3223 5046 6.669125 ATTGACCAATTCTCCACATTTTGA 57.331 33.333 0.00 0.00 0.00 2.69
3224 5047 7.308109 CCAAATTGACCAATTCTCCACATTTTG 60.308 37.037 8.26 0.00 39.88 2.44
3225 5048 6.711645 CCAAATTGACCAATTCTCCACATTTT 59.288 34.615 8.26 0.00 39.88 1.82
3226 5049 6.183361 ACCAAATTGACCAATTCTCCACATTT 60.183 34.615 8.26 0.00 39.88 2.32
3227 5050 5.307716 ACCAAATTGACCAATTCTCCACATT 59.692 36.000 8.26 0.00 39.88 2.71
3228 5051 4.840115 ACCAAATTGACCAATTCTCCACAT 59.160 37.500 8.26 0.00 39.88 3.21
3229 5052 4.222336 ACCAAATTGACCAATTCTCCACA 58.778 39.130 8.26 0.00 39.88 4.17
3230 5053 4.871933 ACCAAATTGACCAATTCTCCAC 57.128 40.909 8.26 0.00 39.88 4.02
3231 5054 5.609423 CAAACCAAATTGACCAATTCTCCA 58.391 37.500 8.26 0.00 39.88 3.86
3232 5055 4.452114 GCAAACCAAATTGACCAATTCTCC 59.548 41.667 8.26 0.00 39.88 3.71
3233 5056 5.299949 AGCAAACCAAATTGACCAATTCTC 58.700 37.500 8.26 0.00 39.88 2.87
3234 5057 5.294734 AGCAAACCAAATTGACCAATTCT 57.705 34.783 8.26 0.00 39.88 2.40
3235 5058 6.375945 AAAGCAAACCAAATTGACCAATTC 57.624 33.333 8.26 0.00 39.88 2.17
3236 5059 7.718753 TCATAAAGCAAACCAAATTGACCAATT 59.281 29.630 2.38 2.38 42.35 2.32
3237 5060 7.222872 TCATAAAGCAAACCAAATTGACCAAT 58.777 30.769 0.00 0.00 31.84 3.16
3238 5061 6.586344 TCATAAAGCAAACCAAATTGACCAA 58.414 32.000 0.00 0.00 31.84 3.67
3239 5062 6.166984 TCATAAAGCAAACCAAATTGACCA 57.833 33.333 0.00 0.00 31.84 4.02
3240 5063 6.710692 CTCATAAAGCAAACCAAATTGACC 57.289 37.500 0.00 0.00 31.84 4.02
3254 5077 3.372206 AGTGACACATTCGCTCATAAAGC 59.628 43.478 8.59 0.00 41.56 3.51
3255 5078 5.446473 GGAAGTGACACATTCGCTCATAAAG 60.446 44.000 8.59 0.00 44.81 1.85
3256 5079 4.391830 GGAAGTGACACATTCGCTCATAAA 59.608 41.667 8.59 0.00 44.81 1.40
3257 5080 3.932710 GGAAGTGACACATTCGCTCATAA 59.067 43.478 8.59 0.00 44.81 1.90
3258 5081 3.521560 GGAAGTGACACATTCGCTCATA 58.478 45.455 8.59 0.00 44.81 2.15
3259 5082 2.350522 GGAAGTGACACATTCGCTCAT 58.649 47.619 8.59 0.00 44.81 2.90
3260 5083 1.608025 GGGAAGTGACACATTCGCTCA 60.608 52.381 18.71 0.00 44.81 4.26
3261 5084 1.079503 GGGAAGTGACACATTCGCTC 58.920 55.000 18.71 4.47 44.81 5.03
3263 5086 0.798776 CAGGGAAGTGACACATTCGC 59.201 55.000 18.51 18.51 38.32 4.70
3264 5087 2.169832 ACAGGGAAGTGACACATTCG 57.830 50.000 8.59 0.39 0.00 3.34
3265 5088 2.030805 GCAACAGGGAAGTGACACATTC 60.031 50.000 8.59 8.50 0.00 2.67
3266 5089 1.956477 GCAACAGGGAAGTGACACATT 59.044 47.619 8.59 0.00 0.00 2.71
3267 5090 1.609208 GCAACAGGGAAGTGACACAT 58.391 50.000 8.59 0.00 0.00 3.21
3268 5091 0.813610 CGCAACAGGGAAGTGACACA 60.814 55.000 8.59 0.00 0.00 3.72
3269 5092 0.531974 TCGCAACAGGGAAGTGACAC 60.532 55.000 0.00 0.00 0.00 3.67
3270 5093 0.249868 CTCGCAACAGGGAAGTGACA 60.250 55.000 0.00 0.00 0.00 3.58
3271 5094 1.569479 GCTCGCAACAGGGAAGTGAC 61.569 60.000 0.00 0.00 0.00 3.67
3272 5095 1.301716 GCTCGCAACAGGGAAGTGA 60.302 57.895 0.00 0.00 0.00 3.41
3273 5096 2.328099 GGCTCGCAACAGGGAAGTG 61.328 63.158 0.00 0.00 0.00 3.16
3274 5097 2.032681 GGCTCGCAACAGGGAAGT 59.967 61.111 0.00 0.00 0.00 3.01
3275 5098 3.121030 CGGCTCGCAACAGGGAAG 61.121 66.667 0.00 0.00 0.00 3.46
3276 5099 2.102109 TAACGGCTCGCAACAGGGAA 62.102 55.000 0.00 0.00 0.00 3.97
3277 5100 2.575893 TAACGGCTCGCAACAGGGA 61.576 57.895 0.00 0.00 0.00 4.20
3278 5101 2.047655 TAACGGCTCGCAACAGGG 60.048 61.111 0.00 0.00 0.00 4.45
3279 5102 2.726691 CGTAACGGCTCGCAACAGG 61.727 63.158 0.00 0.00 0.00 4.00
3280 5103 2.726691 CCGTAACGGCTCGCAACAG 61.727 63.158 0.00 0.00 41.17 3.16
3281 5104 2.735478 CCGTAACGGCTCGCAACA 60.735 61.111 0.00 0.00 41.17 3.33
3282 5105 3.484547 CCCGTAACGGCTCGCAAC 61.485 66.667 0.00 0.00 46.86 4.17
3283 5106 4.745751 CCCCGTAACGGCTCGCAA 62.746 66.667 0.00 0.00 46.86 4.85
3301 5124 3.414700 GTCAGCAAGCCACGTCGG 61.415 66.667 0.00 0.00 38.11 4.79
3302 5125 2.356313 AGTCAGCAAGCCACGTCG 60.356 61.111 0.00 0.00 0.00 5.12
3303 5126 1.287730 CTGAGTCAGCAAGCCACGTC 61.288 60.000 7.33 0.00 0.00 4.34
3304 5127 1.301244 CTGAGTCAGCAAGCCACGT 60.301 57.895 7.33 0.00 0.00 4.49
3305 5128 3.559024 CTGAGTCAGCAAGCCACG 58.441 61.111 7.33 0.00 0.00 4.94
3314 5137 1.227380 GGGCCATACGCTGAGTCAG 60.227 63.158 16.21 16.21 37.74 3.51
3315 5138 1.987306 TGGGCCATACGCTGAGTCA 60.987 57.895 0.00 0.00 37.74 3.41
3316 5139 1.521681 GTGGGCCATACGCTGAGTC 60.522 63.158 10.70 0.00 37.74 3.36
3317 5140 1.990060 AGTGGGCCATACGCTGAGT 60.990 57.895 10.70 0.00 37.74 3.41
3318 5141 1.522355 CAGTGGGCCATACGCTGAG 60.522 63.158 10.70 0.00 46.53 3.35
3319 5142 2.238847 GACAGTGGGCCATACGCTGA 62.239 60.000 24.00 0.00 46.53 4.26
3321 5144 2.244117 CTGACAGTGGGCCATACGCT 62.244 60.000 10.70 0.00 37.74 5.07
3322 5145 1.815421 CTGACAGTGGGCCATACGC 60.815 63.158 10.70 0.00 0.00 4.42
3323 5146 1.153369 CCTGACAGTGGGCCATACG 60.153 63.158 10.70 3.56 0.00 3.06
3324 5147 0.839946 ATCCTGACAGTGGGCCATAC 59.160 55.000 10.70 2.57 0.00 2.39
3325 5148 2.487746 TATCCTGACAGTGGGCCATA 57.512 50.000 10.70 0.00 0.00 2.74
3326 5149 1.595311 TTATCCTGACAGTGGGCCAT 58.405 50.000 10.70 0.00 0.00 4.40
3327 5150 1.595311 ATTATCCTGACAGTGGGCCA 58.405 50.000 0.00 0.00 0.00 5.36
3328 5151 2.301346 CAATTATCCTGACAGTGGGCC 58.699 52.381 0.00 0.00 0.00 5.80
3329 5152 2.684881 CACAATTATCCTGACAGTGGGC 59.315 50.000 0.93 0.00 0.00 5.36
3330 5153 4.220693 TCACAATTATCCTGACAGTGGG 57.779 45.455 0.93 0.00 0.00 4.61
3331 5154 4.637534 CCTTCACAATTATCCTGACAGTGG 59.362 45.833 0.93 0.00 0.00 4.00
3332 5155 5.248640 ACCTTCACAATTATCCTGACAGTG 58.751 41.667 0.93 0.00 0.00 3.66
3333 5156 5.505181 ACCTTCACAATTATCCTGACAGT 57.495 39.130 0.93 0.00 0.00 3.55
3334 5157 6.824305 AAACCTTCACAATTATCCTGACAG 57.176 37.500 0.00 0.00 0.00 3.51
3335 5158 7.595819 AAAAACCTTCACAATTATCCTGACA 57.404 32.000 0.00 0.00 0.00 3.58
3365 5188 0.826062 GGGAGGGGATGCACAATTTG 59.174 55.000 0.00 0.00 0.00 2.32
3366 5189 0.712380 AGGGAGGGGATGCACAATTT 59.288 50.000 0.00 0.00 0.00 1.82
3367 5190 0.032813 CAGGGAGGGGATGCACAATT 60.033 55.000 0.00 0.00 0.00 2.32
3368 5191 1.616921 CAGGGAGGGGATGCACAAT 59.383 57.895 0.00 0.00 0.00 2.71
3369 5192 2.615465 CCAGGGAGGGGATGCACAA 61.615 63.158 0.00 0.00 0.00 3.33
3370 5193 3.016971 CCAGGGAGGGGATGCACA 61.017 66.667 0.00 0.00 0.00 4.57
3371 5194 3.017581 ACCAGGGAGGGGATGCAC 61.018 66.667 0.00 0.00 43.89 4.57
3372 5195 2.692368 GACCAGGGAGGGGATGCA 60.692 66.667 0.00 0.00 43.89 3.96
3373 5196 1.863155 TTTGACCAGGGAGGGGATGC 61.863 60.000 0.00 0.00 43.89 3.91
3374 5197 0.704076 TTTTGACCAGGGAGGGGATG 59.296 55.000 0.00 0.00 43.89 3.51
3375 5198 1.570979 GATTTTGACCAGGGAGGGGAT 59.429 52.381 0.00 0.00 43.89 3.85
3376 5199 0.999712 GATTTTGACCAGGGAGGGGA 59.000 55.000 0.00 0.00 43.89 4.81
3377 5200 0.033109 GGATTTTGACCAGGGAGGGG 60.033 60.000 0.00 0.00 43.89 4.79
3378 5201 0.033109 GGGATTTTGACCAGGGAGGG 60.033 60.000 0.00 0.00 43.89 4.30
3379 5202 0.033109 GGGGATTTTGACCAGGGAGG 60.033 60.000 0.00 0.00 45.67 4.30
3380 5203 0.704076 TGGGGATTTTGACCAGGGAG 59.296 55.000 0.00 0.00 0.00 4.30
3381 5204 1.162505 TTGGGGATTTTGACCAGGGA 58.837 50.000 0.00 0.00 35.37 4.20
3382 5205 2.252535 ATTGGGGATTTTGACCAGGG 57.747 50.000 0.00 0.00 35.37 4.45
3383 5206 3.172339 TGAATTGGGGATTTTGACCAGG 58.828 45.455 0.00 0.00 35.37 4.45
3384 5207 3.368739 GCTGAATTGGGGATTTTGACCAG 60.369 47.826 0.00 0.00 35.37 4.00
3385 5208 2.566724 GCTGAATTGGGGATTTTGACCA 59.433 45.455 0.00 0.00 0.00 4.02
3386 5209 2.093500 GGCTGAATTGGGGATTTTGACC 60.093 50.000 0.00 0.00 0.00 4.02
3387 5210 2.093500 GGGCTGAATTGGGGATTTTGAC 60.093 50.000 0.00 0.00 0.00 3.18
3388 5211 2.187100 GGGCTGAATTGGGGATTTTGA 58.813 47.619 0.00 0.00 0.00 2.69
3389 5212 1.134729 CGGGCTGAATTGGGGATTTTG 60.135 52.381 0.00 0.00 0.00 2.44
3390 5213 1.194218 CGGGCTGAATTGGGGATTTT 58.806 50.000 0.00 0.00 0.00 1.82
3391 5214 0.334676 TCGGGCTGAATTGGGGATTT 59.665 50.000 0.00 0.00 0.00 2.17
3392 5215 0.557729 ATCGGGCTGAATTGGGGATT 59.442 50.000 0.00 0.00 0.00 3.01
3393 5216 0.557729 AATCGGGCTGAATTGGGGAT 59.442 50.000 0.00 0.00 0.00 3.85
3394 5217 0.106719 GAATCGGGCTGAATTGGGGA 60.107 55.000 0.00 0.00 0.00 4.81
3395 5218 1.447317 CGAATCGGGCTGAATTGGGG 61.447 60.000 0.00 0.00 0.00 4.96
3396 5219 1.447317 CCGAATCGGGCTGAATTGGG 61.447 60.000 14.91 7.28 44.15 4.12
3397 5220 2.024918 CCGAATCGGGCTGAATTGG 58.975 57.895 14.91 0.74 44.15 3.16
3416 5239 2.100087 CGAGAGAGAGCTAGGGTTTTCC 59.900 54.545 0.00 0.00 39.75 3.13
3417 5240 3.018149 TCGAGAGAGAGCTAGGGTTTTC 58.982 50.000 0.00 0.00 34.84 2.29
3418 5241 3.088789 TCGAGAGAGAGCTAGGGTTTT 57.911 47.619 0.00 0.00 34.84 2.43
3419 5242 2.810870 TCGAGAGAGAGCTAGGGTTT 57.189 50.000 0.00 0.00 34.84 3.27
3432 5255 2.618241 CAGGAGAAGGTGAGATCGAGAG 59.382 54.545 0.00 0.00 0.00 3.20
3433 5256 2.025793 ACAGGAGAAGGTGAGATCGAGA 60.026 50.000 0.00 0.00 0.00 4.04
3434 5257 2.357637 GACAGGAGAAGGTGAGATCGAG 59.642 54.545 0.00 0.00 0.00 4.04
3435 5258 2.025793 AGACAGGAGAAGGTGAGATCGA 60.026 50.000 0.00 0.00 0.00 3.59
3436 5259 2.357637 GAGACAGGAGAAGGTGAGATCG 59.642 54.545 0.00 0.00 0.00 3.69
3437 5260 2.693074 GGAGACAGGAGAAGGTGAGATC 59.307 54.545 0.00 0.00 0.00 2.75
3438 5261 2.043664 TGGAGACAGGAGAAGGTGAGAT 59.956 50.000 0.00 0.00 35.01 2.75
3439 5262 1.429299 TGGAGACAGGAGAAGGTGAGA 59.571 52.381 0.00 0.00 35.01 3.27
3440 5263 1.930251 TGGAGACAGGAGAAGGTGAG 58.070 55.000 0.00 0.00 35.01 3.51
3452 5275 1.690893 GCTATGGCAGATCTGGAGACA 59.309 52.381 23.89 7.22 38.54 3.41
3453 5276 1.001860 GGCTATGGCAGATCTGGAGAC 59.998 57.143 23.89 7.16 40.87 3.36
3454 5277 1.346062 GGCTATGGCAGATCTGGAGA 58.654 55.000 23.89 0.00 40.87 3.71
3455 5278 0.037512 CGGCTATGGCAGATCTGGAG 60.038 60.000 23.89 0.00 40.87 3.86
3456 5279 0.760567 ACGGCTATGGCAGATCTGGA 60.761 55.000 23.89 0.00 40.87 3.86
3457 5280 0.320247 GACGGCTATGGCAGATCTGG 60.320 60.000 23.89 8.12 40.87 3.86
3458 5281 0.665670 CGACGGCTATGGCAGATCTG 60.666 60.000 18.84 18.84 40.87 2.90
3459 5282 1.662608 CGACGGCTATGGCAGATCT 59.337 57.895 8.42 0.00 40.87 2.75
3460 5283 2.024319 GCGACGGCTATGGCAGATC 61.024 63.158 8.42 1.44 40.87 2.75
3461 5284 2.029666 GCGACGGCTATGGCAGAT 59.970 61.111 8.42 0.00 40.87 2.90
3462 5285 4.221422 GGCGACGGCTATGGCAGA 62.221 66.667 15.00 0.00 40.87 4.26
3478 5301 3.103911 GCGAGGTGACGACAACGG 61.104 66.667 0.00 0.00 44.46 4.44
3479 5302 2.050351 AGCGAGGTGACGACAACG 60.050 61.111 0.00 2.11 45.75 4.10
3480 5303 2.081212 CGAGCGAGGTGACGACAAC 61.081 63.158 0.00 0.00 35.09 3.32
3481 5304 2.183858 CTCGAGCGAGGTGACGACAA 62.184 60.000 11.83 0.00 38.51 3.18
3482 5305 2.667199 TCGAGCGAGGTGACGACA 60.667 61.111 0.00 0.00 35.09 4.35
3483 5306 1.707239 ATCTCGAGCGAGGTGACGAC 61.707 60.000 18.57 0.00 42.20 4.34
3484 5307 1.449778 ATCTCGAGCGAGGTGACGA 60.450 57.895 18.57 0.27 42.20 4.20
3485 5308 3.102985 ATCTCGAGCGAGGTGACG 58.897 61.111 18.57 0.00 42.20 4.35
3489 5312 2.122167 GGTCCATCTCGAGCGAGGT 61.122 63.158 18.57 9.96 42.20 3.85
3490 5313 2.069465 CTGGTCCATCTCGAGCGAGG 62.069 65.000 18.57 9.35 42.20 4.63
3491 5314 1.358402 CTGGTCCATCTCGAGCGAG 59.642 63.158 13.36 13.36 43.21 5.03
3492 5315 0.107361 TACTGGTCCATCTCGAGCGA 60.107 55.000 7.81 0.00 32.83 4.93
3493 5316 0.955178 ATACTGGTCCATCTCGAGCG 59.045 55.000 7.81 0.63 32.83 5.03
3494 5317 1.957177 TCATACTGGTCCATCTCGAGC 59.043 52.381 7.81 0.00 0.00 5.03
3495 5318 2.556189 CCTCATACTGGTCCATCTCGAG 59.444 54.545 5.93 5.93 0.00 4.04
3496 5319 2.587522 CCTCATACTGGTCCATCTCGA 58.412 52.381 0.00 0.00 0.00 4.04
3497 5320 1.615883 CCCTCATACTGGTCCATCTCG 59.384 57.143 0.00 0.00 0.00 4.04
3498 5321 2.896685 CTCCCTCATACTGGTCCATCTC 59.103 54.545 0.00 0.00 0.00 2.75
3499 5322 2.520120 TCTCCCTCATACTGGTCCATCT 59.480 50.000 0.00 0.00 0.00 2.90
3500 5323 2.896685 CTCTCCCTCATACTGGTCCATC 59.103 54.545 0.00 0.00 0.00 3.51
3501 5324 2.520120 TCTCTCCCTCATACTGGTCCAT 59.480 50.000 0.00 0.00 0.00 3.41
3502 5325 1.930204 TCTCTCCCTCATACTGGTCCA 59.070 52.381 0.00 0.00 0.00 4.02
3503 5326 2.593026 CTCTCTCCCTCATACTGGTCC 58.407 57.143 0.00 0.00 0.00 4.46
3504 5327 1.960689 GCTCTCTCCCTCATACTGGTC 59.039 57.143 0.00 0.00 0.00 4.02
3505 5328 1.573376 AGCTCTCTCCCTCATACTGGT 59.427 52.381 0.00 0.00 0.00 4.00
3506 5329 1.962807 CAGCTCTCTCCCTCATACTGG 59.037 57.143 0.00 0.00 0.00 4.00
3507 5330 1.962807 CCAGCTCTCTCCCTCATACTG 59.037 57.143 0.00 0.00 0.00 2.74
3508 5331 1.757405 GCCAGCTCTCTCCCTCATACT 60.757 57.143 0.00 0.00 0.00 2.12
3509 5332 0.678950 GCCAGCTCTCTCCCTCATAC 59.321 60.000 0.00 0.00 0.00 2.39
3510 5333 0.262876 TGCCAGCTCTCTCCCTCATA 59.737 55.000 0.00 0.00 0.00 2.15
3511 5334 1.002662 TGCCAGCTCTCTCCCTCAT 59.997 57.895 0.00 0.00 0.00 2.90
3512 5335 1.685077 CTGCCAGCTCTCTCCCTCA 60.685 63.158 0.00 0.00 0.00 3.86
3513 5336 3.092780 GCTGCCAGCTCTCTCCCTC 62.093 68.421 10.04 0.00 38.45 4.30
3514 5337 3.082701 GCTGCCAGCTCTCTCCCT 61.083 66.667 10.04 0.00 38.45 4.20
3515 5338 4.173924 GGCTGCCAGCTCTCTCCC 62.174 72.222 17.55 0.00 41.99 4.30
3516 5339 4.527583 CGGCTGCCAGCTCTCTCC 62.528 72.222 20.29 0.00 41.99 3.71
3517 5340 4.527583 CCGGCTGCCAGCTCTCTC 62.528 72.222 20.29 0.00 41.99 3.20
3519 5342 4.527583 CTCCGGCTGCCAGCTCTC 62.528 72.222 20.29 0.00 41.99 3.20
3521 5344 4.087892 TTCTCCGGCTGCCAGCTC 62.088 66.667 20.29 5.88 41.99 4.09
3522 5345 4.400961 GTTCTCCGGCTGCCAGCT 62.401 66.667 20.29 0.00 41.99 4.24
3523 5346 4.704833 TGTTCTCCGGCTGCCAGC 62.705 66.667 20.29 8.55 41.46 4.85
3524 5347 2.435586 CTGTTCTCCGGCTGCCAG 60.436 66.667 20.29 7.68 0.00 4.85
3525 5348 4.020617 CCTGTTCTCCGGCTGCCA 62.021 66.667 20.29 0.00 0.00 4.92
3526 5349 4.785453 CCCTGTTCTCCGGCTGCC 62.785 72.222 9.11 9.11 0.00 4.85
3527 5350 3.672295 CTCCCTGTTCTCCGGCTGC 62.672 68.421 0.00 0.00 0.00 5.25
3528 5351 2.581354 CTCCCTGTTCTCCGGCTG 59.419 66.667 0.00 0.00 0.00 4.85
3529 5352 2.685380 CCTCCCTGTTCTCCGGCT 60.685 66.667 0.00 0.00 0.00 5.52
3530 5353 3.787001 CCCTCCCTGTTCTCCGGC 61.787 72.222 0.00 0.00 0.00 6.13
3531 5354 1.001248 TACCCTCCCTGTTCTCCGG 59.999 63.158 0.00 0.00 0.00 5.14
3532 5355 2.506065 CTACCCTCCCTGTTCTCCG 58.494 63.158 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.