Multiple sequence alignment - TraesCS2D01G451900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G451900 chr2D 100.000 4354 0 0 1 4354 561833943 561838296 0.000000e+00 8041.0
1 TraesCS2D01G451900 chr2B 94.526 2941 106 23 328 3252 670750119 670753020 0.000000e+00 4488.0
2 TraesCS2D01G451900 chr2B 89.718 603 25 9 3248 3820 670753048 670753643 0.000000e+00 736.0
3 TraesCS2D01G451900 chr2B 93.421 152 4 2 8 159 670749387 670749532 2.040000e-53 220.0
4 TraesCS2D01G451900 chr2B 88.372 172 18 2 355 524 670749331 670749502 5.710000e-49 206.0
5 TraesCS2D01G451900 chr2B 94.444 126 7 0 3962 4087 670753640 670753765 1.240000e-45 195.0
6 TraesCS2D01G451900 chr2B 82.530 166 12 5 4173 4325 670833652 670833813 3.530000e-26 130.0
7 TraesCS2D01G451900 chr2A 92.514 2351 106 22 909 3244 701481159 701483454 0.000000e+00 3302.0
8 TraesCS2D01G451900 chr2A 89.672 610 33 12 313 916 701480542 701481127 0.000000e+00 750.0
9 TraesCS2D01G451900 chr2A 90.272 257 16 4 3248 3502 701483497 701483746 1.170000e-85 327.0
10 TraesCS2D01G451900 chr2A 89.147 258 7 9 4117 4354 701484274 701484530 7.080000e-78 302.0
11 TraesCS2D01G451900 chr2A 85.317 252 11 8 3493 3726 701483770 701484013 2.020000e-58 237.0
12 TraesCS2D01G451900 chr2A 100.000 40 0 0 4074 4113 701484141 701484180 1.680000e-09 75.0
13 TraesCS2D01G451900 chr2A 100.000 29 0 0 3744 3772 701484052 701484080 2.000000e-03 54.7
14 TraesCS2D01G451900 chr5D 92.063 126 10 0 3962 4087 356999444 356999319 1.240000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G451900 chr2D 561833943 561838296 4353 False 8041.0 8041 100.000000 1 4354 1 chr2D.!!$F1 4353
1 TraesCS2D01G451900 chr2B 670749331 670753765 4434 False 1169.0 4488 92.096200 8 4087 5 chr2B.!!$F2 4079
2 TraesCS2D01G451900 chr2A 701480542 701484530 3988 False 721.1 3302 92.417429 313 4354 7 chr2A.!!$F1 4041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 251 0.179215 CAGCCTTCGATTCGTTGTGC 60.179 55.000 5.89 5.41 0.00 4.57 F
290 340 0.263172 CCTCCTCCCCTCTTCTGCTA 59.737 60.000 0.00 0.00 0.00 3.49 F
1431 1946 0.179009 AACAAGGAGCTTGCAGCAGA 60.179 50.000 10.16 0.00 45.56 4.26 F
2024 2545 1.376683 GTGGCCCTGCGTGAACATA 60.377 57.895 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1864 0.469705 AGTGCTGCCAAAATGTCCCA 60.470 50.0 0.00 0.0 0.00 4.37 R
1994 2515 0.632835 AGGGCCACCATGTCATCATT 59.367 50.0 6.18 0.0 40.13 2.57 R
2358 2879 0.536006 AGCTTCCCACAACTGTCAGC 60.536 55.0 0.00 0.0 0.00 4.26 R
3832 4473 0.167251 CGCGCGTGTTAAGGGAAAAT 59.833 50.0 24.19 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 94 0.968405 TGATTTTGGGCTGCTTGTCC 59.032 50.000 0.00 0.00 41.87 4.02
133 183 8.962884 ATGTTTTCTTGCTTTTTATGGTTTCT 57.037 26.923 0.00 0.00 0.00 2.52
152 202 1.278985 CTTCTGGGTACATGCCAGTGA 59.721 52.381 15.08 6.98 33.75 3.41
159 209 3.558321 GGGTACATGCCAGTGAAAGTACA 60.558 47.826 13.33 0.00 34.93 2.90
160 210 3.684788 GGTACATGCCAGTGAAAGTACAG 59.315 47.826 13.33 0.00 34.93 2.74
161 211 3.492102 ACATGCCAGTGAAAGTACAGT 57.508 42.857 0.00 0.00 0.00 3.55
162 212 4.617253 ACATGCCAGTGAAAGTACAGTA 57.383 40.909 0.00 0.00 0.00 2.74
163 213 4.315803 ACATGCCAGTGAAAGTACAGTAC 58.684 43.478 2.05 2.05 0.00 2.73
164 214 4.202315 ACATGCCAGTGAAAGTACAGTACA 60.202 41.667 13.37 0.00 0.00 2.90
165 215 4.617253 TGCCAGTGAAAGTACAGTACAT 57.383 40.909 13.37 0.00 0.00 2.29
166 216 4.968259 TGCCAGTGAAAGTACAGTACATT 58.032 39.130 13.37 7.20 0.00 2.71
167 217 5.373222 TGCCAGTGAAAGTACAGTACATTT 58.627 37.500 13.37 9.93 0.00 2.32
168 218 5.468746 TGCCAGTGAAAGTACAGTACATTTC 59.531 40.000 13.37 16.95 33.31 2.17
169 219 5.468746 GCCAGTGAAAGTACAGTACATTTCA 59.531 40.000 21.91 21.91 38.85 2.69
170 220 6.347725 GCCAGTGAAAGTACAGTACATTTCAG 60.348 42.308 24.14 18.17 41.05 3.02
171 221 6.706270 CCAGTGAAAGTACAGTACATTTCAGT 59.294 38.462 24.14 23.87 42.92 3.41
172 222 7.226720 CCAGTGAAAGTACAGTACATTTCAGTT 59.773 37.037 25.08 18.36 41.20 3.16
173 223 8.612619 CAGTGAAAGTACAGTACATTTCAGTTT 58.387 33.333 25.08 13.43 41.20 2.66
174 224 8.612619 AGTGAAAGTACAGTACATTTCAGTTTG 58.387 33.333 24.14 0.00 40.60 2.93
175 225 8.609176 GTGAAAGTACAGTACATTTCAGTTTGA 58.391 33.333 24.14 6.53 41.05 2.69
176 226 8.609176 TGAAAGTACAGTACATTTCAGTTTGAC 58.391 33.333 21.91 4.04 36.89 3.18
177 227 7.492352 AAGTACAGTACATTTCAGTTTGACC 57.508 36.000 13.37 0.00 0.00 4.02
178 228 5.694910 AGTACAGTACATTTCAGTTTGACCG 59.305 40.000 13.37 0.00 0.00 4.79
179 229 4.448210 ACAGTACATTTCAGTTTGACCGT 58.552 39.130 0.00 0.00 0.00 4.83
180 230 4.510340 ACAGTACATTTCAGTTTGACCGTC 59.490 41.667 0.00 0.00 0.00 4.79
181 231 4.062991 AGTACATTTCAGTTTGACCGTCC 58.937 43.478 0.00 0.00 0.00 4.79
182 232 2.227194 ACATTTCAGTTTGACCGTCCC 58.773 47.619 0.00 0.00 0.00 4.46
183 233 2.226330 CATTTCAGTTTGACCGTCCCA 58.774 47.619 0.00 0.00 0.00 4.37
184 234 1.961793 TTTCAGTTTGACCGTCCCAG 58.038 50.000 0.00 0.00 0.00 4.45
185 235 0.534203 TTCAGTTTGACCGTCCCAGC 60.534 55.000 0.00 0.00 0.00 4.85
186 236 1.966451 CAGTTTGACCGTCCCAGCC 60.966 63.158 0.00 0.00 0.00 4.85
187 237 2.147387 AGTTTGACCGTCCCAGCCT 61.147 57.895 0.00 0.00 0.00 4.58
188 238 1.228154 GTTTGACCGTCCCAGCCTT 60.228 57.895 0.00 0.00 0.00 4.35
189 239 1.072505 TTTGACCGTCCCAGCCTTC 59.927 57.895 0.00 0.00 0.00 3.46
190 240 2.725203 TTTGACCGTCCCAGCCTTCG 62.725 60.000 0.00 0.00 0.00 3.79
191 241 3.379445 GACCGTCCCAGCCTTCGA 61.379 66.667 0.00 0.00 0.00 3.71
192 242 2.683933 ACCGTCCCAGCCTTCGAT 60.684 61.111 0.00 0.00 0.00 3.59
193 243 2.240162 GACCGTCCCAGCCTTCGATT 62.240 60.000 0.00 0.00 0.00 3.34
194 244 1.521681 CCGTCCCAGCCTTCGATTC 60.522 63.158 0.00 0.00 0.00 2.52
195 245 1.878522 CGTCCCAGCCTTCGATTCG 60.879 63.158 0.00 0.00 0.00 3.34
196 246 1.218316 GTCCCAGCCTTCGATTCGT 59.782 57.895 5.89 0.00 0.00 3.85
197 247 0.391263 GTCCCAGCCTTCGATTCGTT 60.391 55.000 5.89 0.00 0.00 3.85
198 248 0.391130 TCCCAGCCTTCGATTCGTTG 60.391 55.000 5.89 0.45 0.00 4.10
199 249 0.673644 CCCAGCCTTCGATTCGTTGT 60.674 55.000 5.89 0.00 0.00 3.32
200 250 0.443869 CCAGCCTTCGATTCGTTGTG 59.556 55.000 5.89 0.00 0.00 3.33
201 251 0.179215 CAGCCTTCGATTCGTTGTGC 60.179 55.000 5.89 5.41 0.00 4.57
202 252 1.225745 GCCTTCGATTCGTTGTGCG 60.226 57.895 5.89 0.00 43.01 5.34
211 261 3.597550 TCGTTGTGCGATTTCCAGA 57.402 47.368 0.00 0.00 45.68 3.86
212 262 2.093306 TCGTTGTGCGATTTCCAGAT 57.907 45.000 0.00 0.00 45.68 2.90
213 263 1.731709 TCGTTGTGCGATTTCCAGATG 59.268 47.619 0.00 0.00 45.68 2.90
214 264 1.731709 CGTTGTGCGATTTCCAGATGA 59.268 47.619 0.00 0.00 44.77 2.92
215 265 2.352651 CGTTGTGCGATTTCCAGATGAT 59.647 45.455 0.00 0.00 44.77 2.45
216 266 3.181507 CGTTGTGCGATTTCCAGATGATT 60.182 43.478 0.00 0.00 44.77 2.57
217 267 4.672542 CGTTGTGCGATTTCCAGATGATTT 60.673 41.667 0.00 0.00 44.77 2.17
218 268 5.163513 GTTGTGCGATTTCCAGATGATTTT 58.836 37.500 0.00 0.00 0.00 1.82
219 269 6.321717 GTTGTGCGATTTCCAGATGATTTTA 58.678 36.000 0.00 0.00 0.00 1.52
220 270 5.879237 TGTGCGATTTCCAGATGATTTTAC 58.121 37.500 0.00 0.00 0.00 2.01
221 271 5.647658 TGTGCGATTTCCAGATGATTTTACT 59.352 36.000 0.00 0.00 0.00 2.24
222 272 6.150976 TGTGCGATTTCCAGATGATTTTACTT 59.849 34.615 0.00 0.00 0.00 2.24
223 273 6.688813 GTGCGATTTCCAGATGATTTTACTTC 59.311 38.462 0.00 0.00 0.00 3.01
224 274 6.599244 TGCGATTTCCAGATGATTTTACTTCT 59.401 34.615 0.00 0.00 0.00 2.85
225 275 7.121168 TGCGATTTCCAGATGATTTTACTTCTT 59.879 33.333 0.00 0.00 0.00 2.52
226 276 7.970614 GCGATTTCCAGATGATTTTACTTCTTT 59.029 33.333 0.00 0.00 0.00 2.52
227 277 9.495754 CGATTTCCAGATGATTTTACTTCTTTC 57.504 33.333 0.00 0.00 0.00 2.62
228 278 9.495754 GATTTCCAGATGATTTTACTTCTTTCG 57.504 33.333 0.00 0.00 0.00 3.46
229 279 6.422776 TCCAGATGATTTTACTTCTTTCGC 57.577 37.500 0.00 0.00 0.00 4.70
230 280 5.354234 TCCAGATGATTTTACTTCTTTCGCC 59.646 40.000 0.00 0.00 0.00 5.54
231 281 5.123820 CCAGATGATTTTACTTCTTTCGCCA 59.876 40.000 0.00 0.00 0.00 5.69
232 282 6.349280 CCAGATGATTTTACTTCTTTCGCCAA 60.349 38.462 0.00 0.00 0.00 4.52
233 283 7.253422 CAGATGATTTTACTTCTTTCGCCAAT 58.747 34.615 0.00 0.00 0.00 3.16
234 284 7.219535 CAGATGATTTTACTTCTTTCGCCAATG 59.780 37.037 0.00 0.00 0.00 2.82
235 285 6.325919 TGATTTTACTTCTTTCGCCAATGT 57.674 33.333 0.00 0.00 0.00 2.71
236 286 6.744112 TGATTTTACTTCTTTCGCCAATGTT 58.256 32.000 0.00 0.00 0.00 2.71
237 287 6.640499 TGATTTTACTTCTTTCGCCAATGTTG 59.360 34.615 0.00 0.00 0.00 3.33
238 288 5.508200 TTTACTTCTTTCGCCAATGTTGT 57.492 34.783 0.00 0.00 0.00 3.32
239 289 3.354089 ACTTCTTTCGCCAATGTTGTG 57.646 42.857 0.00 0.00 0.00 3.33
240 290 2.034558 ACTTCTTTCGCCAATGTTGTGG 59.965 45.455 0.00 0.00 42.05 4.17
241 291 1.686355 TCTTTCGCCAATGTTGTGGT 58.314 45.000 0.00 0.00 41.12 4.16
242 292 2.852449 TCTTTCGCCAATGTTGTGGTA 58.148 42.857 0.00 0.00 41.12 3.25
243 293 3.215151 TCTTTCGCCAATGTTGTGGTAA 58.785 40.909 0.00 0.00 41.12 2.85
244 294 3.632604 TCTTTCGCCAATGTTGTGGTAAA 59.367 39.130 0.00 0.00 41.12 2.01
245 295 3.634568 TTCGCCAATGTTGTGGTAAAG 57.365 42.857 0.00 0.00 41.12 1.85
246 296 1.883275 TCGCCAATGTTGTGGTAAAGG 59.117 47.619 0.00 0.00 41.12 3.11
247 297 1.067915 CGCCAATGTTGTGGTAAAGGG 60.068 52.381 0.00 0.00 41.12 3.95
248 298 2.243810 GCCAATGTTGTGGTAAAGGGA 58.756 47.619 0.00 0.00 41.12 4.20
249 299 2.231235 GCCAATGTTGTGGTAAAGGGAG 59.769 50.000 0.00 0.00 41.12 4.30
250 300 2.231235 CCAATGTTGTGGTAAAGGGAGC 59.769 50.000 0.00 0.00 33.63 4.70
251 301 1.821216 ATGTTGTGGTAAAGGGAGCG 58.179 50.000 0.00 0.00 0.00 5.03
252 302 0.470766 TGTTGTGGTAAAGGGAGCGT 59.529 50.000 0.00 0.00 0.00 5.07
253 303 1.134037 TGTTGTGGTAAAGGGAGCGTT 60.134 47.619 0.00 0.00 0.00 4.84
254 304 1.951602 GTTGTGGTAAAGGGAGCGTTT 59.048 47.619 0.00 0.00 0.00 3.60
255 305 1.600023 TGTGGTAAAGGGAGCGTTTG 58.400 50.000 0.00 0.00 0.00 2.93
256 306 1.134037 TGTGGTAAAGGGAGCGTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
257 307 1.951602 GTGGTAAAGGGAGCGTTTGTT 59.048 47.619 0.00 0.00 0.00 2.83
258 308 2.031420 GTGGTAAAGGGAGCGTTTGTTC 60.031 50.000 0.00 0.00 0.00 3.18
259 309 1.196127 GGTAAAGGGAGCGTTTGTTCG 59.804 52.381 0.00 0.00 0.00 3.95
260 310 1.869132 GTAAAGGGAGCGTTTGTTCGT 59.131 47.619 0.00 0.00 0.00 3.85
261 311 0.661020 AAAGGGAGCGTTTGTTCGTG 59.339 50.000 0.00 0.00 0.00 4.35
262 312 0.463116 AAGGGAGCGTTTGTTCGTGT 60.463 50.000 0.00 0.00 0.00 4.49
263 313 0.878961 AGGGAGCGTTTGTTCGTGTC 60.879 55.000 0.00 0.00 0.00 3.67
264 314 1.568025 GGAGCGTTTGTTCGTGTCC 59.432 57.895 0.00 0.00 0.00 4.02
265 315 1.568025 GAGCGTTTGTTCGTGTCCC 59.432 57.895 0.00 0.00 0.00 4.46
266 316 1.838568 GAGCGTTTGTTCGTGTCCCC 61.839 60.000 0.00 0.00 0.00 4.81
267 317 2.900167 GCGTTTGTTCGTGTCCCCC 61.900 63.158 0.00 0.00 0.00 5.40
282 332 4.179599 CCCCTCCCTCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
283 333 3.039526 CCCTCCCTCCTCCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
284 334 2.652113 CCCTCCCTCCTCCCCTCTT 61.652 68.421 0.00 0.00 0.00 2.85
285 335 1.074850 CCTCCCTCCTCCCCTCTTC 60.075 68.421 0.00 0.00 0.00 2.87
286 336 1.598856 CCTCCCTCCTCCCCTCTTCT 61.599 65.000 0.00 0.00 0.00 2.85
287 337 0.398381 CTCCCTCCTCCCCTCTTCTG 60.398 65.000 0.00 0.00 0.00 3.02
288 338 2.069430 CCCTCCTCCCCTCTTCTGC 61.069 68.421 0.00 0.00 0.00 4.26
289 339 1.002792 CCTCCTCCCCTCTTCTGCT 59.997 63.158 0.00 0.00 0.00 4.24
290 340 0.263172 CCTCCTCCCCTCTTCTGCTA 59.737 60.000 0.00 0.00 0.00 3.49
291 341 1.132881 CCTCCTCCCCTCTTCTGCTAT 60.133 57.143 0.00 0.00 0.00 2.97
292 342 2.688477 CTCCTCCCCTCTTCTGCTATT 58.312 52.381 0.00 0.00 0.00 1.73
293 343 2.632512 CTCCTCCCCTCTTCTGCTATTC 59.367 54.545 0.00 0.00 0.00 1.75
294 344 2.248686 TCCTCCCCTCTTCTGCTATTCT 59.751 50.000 0.00 0.00 0.00 2.40
295 345 3.467483 TCCTCCCCTCTTCTGCTATTCTA 59.533 47.826 0.00 0.00 0.00 2.10
296 346 4.078571 TCCTCCCCTCTTCTGCTATTCTAA 60.079 45.833 0.00 0.00 0.00 2.10
297 347 4.283212 CCTCCCCTCTTCTGCTATTCTAAG 59.717 50.000 0.00 0.00 0.00 2.18
298 348 4.227197 TCCCCTCTTCTGCTATTCTAAGG 58.773 47.826 0.00 0.00 0.00 2.69
299 349 3.326297 CCCCTCTTCTGCTATTCTAAGGG 59.674 52.174 0.00 0.00 41.61 3.95
300 350 3.326297 CCCTCTTCTGCTATTCTAAGGGG 59.674 52.174 0.00 0.00 39.00 4.79
301 351 3.326297 CCTCTTCTGCTATTCTAAGGGGG 59.674 52.174 0.00 0.00 36.17 5.40
385 853 3.573967 TGGAGGTTTGGAAGAAAGCATTC 59.426 43.478 0.00 0.00 35.70 2.67
493 963 6.902417 CGACTCTCTTTGTTTTCTTCTTGTTC 59.098 38.462 0.00 0.00 0.00 3.18
509 979 4.944930 TCTTGTTCCGAAAGTTGGAGAAAA 59.055 37.500 0.00 0.00 36.72 2.29
537 1012 8.884726 GTTTTCTTGCTTTGTTTTATGGGTTTA 58.115 29.630 0.00 0.00 0.00 2.01
549 1024 7.394923 TGTTTTATGGGTTTATTCTGGGTAGTG 59.605 37.037 0.00 0.00 0.00 2.74
550 1025 6.645884 TTATGGGTTTATTCTGGGTAGTGT 57.354 37.500 0.00 0.00 0.00 3.55
551 1026 7.752518 TTATGGGTTTATTCTGGGTAGTGTA 57.247 36.000 0.00 0.00 0.00 2.90
553 1028 5.095809 TGGGTTTATTCTGGGTAGTGTACT 58.904 41.667 0.00 0.00 0.00 2.73
555 1030 6.155049 TGGGTTTATTCTGGGTAGTGTACTAC 59.845 42.308 12.61 12.61 46.09 2.73
556 1031 6.382282 GGGTTTATTCTGGGTAGTGTACTACT 59.618 42.308 18.57 0.00 46.06 2.57
580 1055 5.300752 ACATATCAGGGCAACTAGATTTCG 58.699 41.667 0.00 0.00 33.33 3.46
600 1075 2.820787 CGGTTTTGTGGGGTGCTAATTA 59.179 45.455 0.00 0.00 0.00 1.40
708 1184 2.040278 TGCTCCATTTGCTAAGGTGAGT 59.960 45.455 10.63 0.00 0.00 3.41
709 1185 2.421424 GCTCCATTTGCTAAGGTGAGTG 59.579 50.000 10.63 0.00 0.00 3.51
710 1186 3.869912 GCTCCATTTGCTAAGGTGAGTGA 60.870 47.826 10.63 0.00 0.00 3.41
711 1187 3.937706 CTCCATTTGCTAAGGTGAGTGAG 59.062 47.826 0.00 0.00 0.00 3.51
723 1199 0.884514 TGAGTGAGGTCTTCTCTGCG 59.115 55.000 0.00 0.00 42.86 5.18
747 1223 4.058817 GTTTCTTGGATCTCGTCAGTGTT 58.941 43.478 0.00 0.00 0.00 3.32
750 1226 5.462530 TCTTGGATCTCGTCAGTGTTTAA 57.537 39.130 0.00 0.00 0.00 1.52
752 1228 6.100004 TCTTGGATCTCGTCAGTGTTTAATC 58.900 40.000 0.00 0.00 0.00 1.75
753 1229 5.661056 TGGATCTCGTCAGTGTTTAATCT 57.339 39.130 0.00 0.00 0.00 2.40
755 1231 5.047306 TGGATCTCGTCAGTGTTTAATCTGT 60.047 40.000 0.00 0.00 33.89 3.41
756 1232 5.517054 GGATCTCGTCAGTGTTTAATCTGTC 59.483 44.000 0.00 0.00 33.89 3.51
757 1233 5.447624 TCTCGTCAGTGTTTAATCTGTCA 57.552 39.130 0.00 0.00 33.89 3.58
784 1260 8.834465 CATTACTCCCTGATTTTTACTCATGAG 58.166 37.037 21.37 21.37 32.17 2.90
787 1263 7.918076 ACTCCCTGATTTTTACTCATGAGTTA 58.082 34.615 32.14 21.55 42.54 2.24
851 1327 6.071728 CCTGAATTTTAACTCATGGAAGCACT 60.072 38.462 0.00 0.00 0.00 4.40
906 1382 1.675552 ACCACCACAACAACACTAGC 58.324 50.000 0.00 0.00 0.00 3.42
1019 1534 1.964552 ATGGCTGAGAGCATAGCAAC 58.035 50.000 0.00 0.00 44.75 4.17
1020 1535 0.614812 TGGCTGAGAGCATAGCAACA 59.385 50.000 0.00 0.00 44.75 3.33
1107 1622 2.614057 CGAGTACATGGAAATCAAGGCC 59.386 50.000 0.00 0.00 0.00 5.19
1119 1634 2.113139 AAGGCCGTGGTTGGTGAG 59.887 61.111 0.00 0.00 0.00 3.51
1131 1646 3.515502 TGGTTGGTGAGGTCATAGAAGAG 59.484 47.826 0.00 0.00 0.00 2.85
1349 1864 7.523293 TGATGTGAAAATGTCATGGTAACTT 57.477 32.000 0.00 0.00 38.90 2.66
1431 1946 0.179009 AACAAGGAGCTTGCAGCAGA 60.179 50.000 10.16 0.00 45.56 4.26
1435 1950 1.920610 AGGAGCTTGCAGCAGAAAAT 58.079 45.000 10.16 0.00 45.56 1.82
1463 1978 6.070481 GGAGACCTCTCTCAATAAAAAGGAGT 60.070 42.308 2.37 0.00 44.50 3.85
1476 1991 5.774498 AAAAAGGAGTTGGAGCTTGTAAG 57.226 39.130 0.00 0.00 0.00 2.34
1700 2221 4.460263 ACATGCAACTTAACACCTTCAGA 58.540 39.130 0.00 0.00 0.00 3.27
1982 2503 1.859302 TGGCCAAACCTCAGTTGTTT 58.141 45.000 0.61 0.00 40.22 2.83
1994 2515 2.822561 TCAGTTGTTTCACCAAGCACAA 59.177 40.909 0.00 0.00 0.00 3.33
2024 2545 1.376683 GTGGCCCTGCGTGAACATA 60.377 57.895 0.00 0.00 0.00 2.29
2358 2879 3.144506 GGGCAATCATCAGGTATGTCAG 58.855 50.000 0.00 0.00 36.89 3.51
2359 2880 2.551459 GGCAATCATCAGGTATGTCAGC 59.449 50.000 0.00 0.00 36.89 4.26
2372 2893 2.621763 GTCAGCTGACAGTTGTGGG 58.378 57.895 36.23 0.00 44.18 4.61
2475 2996 8.051535 AGGTTCTGAATGTCAATGATGATAAGT 58.948 33.333 0.00 0.00 38.01 2.24
2505 3026 3.657727 ACTGAAGAAGGAATGGGGAGAAA 59.342 43.478 0.00 0.00 0.00 2.52
2721 3242 8.082242 ACATACATGTAGCTGTTTTTCTTTTCC 58.918 33.333 11.91 0.00 39.68 3.13
2789 3310 7.225538 GCATACATTACTGTGCTTCTAGTTCAT 59.774 37.037 0.00 0.00 36.79 2.57
2794 3315 4.511527 ACTGTGCTTCTAGTTCATCCATG 58.488 43.478 0.00 0.00 0.00 3.66
2977 3503 4.430908 CCACCGTAGAAATCTCAAGGTAC 58.569 47.826 4.72 0.00 0.00 3.34
2978 3504 4.430908 CACCGTAGAAATCTCAAGGTACC 58.569 47.826 2.73 2.73 0.00 3.34
2979 3505 4.081862 CACCGTAGAAATCTCAAGGTACCA 60.082 45.833 15.94 0.00 0.00 3.25
2980 3506 4.081807 ACCGTAGAAATCTCAAGGTACCAC 60.082 45.833 15.94 0.00 0.00 4.16
2981 3507 4.430908 CGTAGAAATCTCAAGGTACCACC 58.569 47.826 15.94 0.00 38.99 4.61
2982 3508 3.611766 AGAAATCTCAAGGTACCACCG 57.388 47.619 15.94 1.42 44.90 4.94
2983 3509 2.904434 AGAAATCTCAAGGTACCACCGT 59.096 45.455 15.94 0.00 44.90 4.83
2984 3510 4.091549 AGAAATCTCAAGGTACCACCGTA 58.908 43.478 15.94 0.00 44.90 4.02
2985 3511 4.159879 AGAAATCTCAAGGTACCACCGTAG 59.840 45.833 15.94 4.14 44.90 3.51
2986 3512 2.885135 TCTCAAGGTACCACCGTAGA 57.115 50.000 15.94 6.52 44.90 2.59
2987 3513 3.159213 TCTCAAGGTACCACCGTAGAA 57.841 47.619 15.94 0.00 44.90 2.10
2988 3514 3.499338 TCTCAAGGTACCACCGTAGAAA 58.501 45.455 15.94 0.00 44.90 2.52
2989 3515 4.091549 TCTCAAGGTACCACCGTAGAAAT 58.908 43.478 15.94 0.00 44.90 2.17
2990 3516 4.159135 TCTCAAGGTACCACCGTAGAAATC 59.841 45.833 15.94 0.00 44.90 2.17
2991 3517 4.091549 TCAAGGTACCACCGTAGAAATCT 58.908 43.478 15.94 0.00 44.90 2.40
2992 3518 4.159135 TCAAGGTACCACCGTAGAAATCTC 59.841 45.833 15.94 0.00 44.90 2.75
2993 3519 3.705051 AGGTACCACCGTAGAAATCTCA 58.295 45.455 15.94 0.00 44.90 3.27
2994 3520 4.091549 AGGTACCACCGTAGAAATCTCAA 58.908 43.478 15.94 0.00 44.90 3.02
2995 3521 4.159879 AGGTACCACCGTAGAAATCTCAAG 59.840 45.833 15.94 0.00 44.90 3.02
2996 3522 3.611766 ACCACCGTAGAAATCTCAAGG 57.388 47.619 0.00 0.00 0.00 3.61
2997 3523 2.904434 ACCACCGTAGAAATCTCAAGGT 59.096 45.455 0.00 0.00 0.00 3.50
2998 3524 4.091549 ACCACCGTAGAAATCTCAAGGTA 58.908 43.478 4.72 0.00 0.00 3.08
3007 3533 7.481798 CGTAGAAATCTCAAGGTAAATGTTTGC 59.518 37.037 0.00 0.00 0.00 3.68
3013 3539 5.935206 TCTCAAGGTAAATGTTTGCGTGATA 59.065 36.000 0.00 0.00 0.00 2.15
3061 3587 4.264253 TGGTGATCCATGAAACATCAGAC 58.736 43.478 0.00 0.00 39.03 3.51
3076 3602 6.323203 ACATCAGACCATTGAAACAAAGAG 57.677 37.500 0.00 0.00 0.00 2.85
3117 3643 1.474077 GGTGTGCCCTGTCATGATTTC 59.526 52.381 0.00 0.00 0.00 2.17
3119 3645 1.355381 TGTGCCCTGTCATGATTTCCT 59.645 47.619 0.00 0.00 0.00 3.36
3194 3722 4.899502 TCAGATCCTTCCTGAAACAGTTC 58.100 43.478 0.00 0.00 37.68 3.01
3280 3848 6.922247 CATCTGTGCTACTGAAATCAGAAT 57.078 37.500 16.93 0.00 46.59 2.40
3281 3849 6.946165 CATCTGTGCTACTGAAATCAGAATC 58.054 40.000 16.93 5.73 46.59 2.52
3304 3872 3.181443 ACCAAAGCAGCTTACTTGTACCT 60.181 43.478 8.45 0.00 0.00 3.08
3346 3914 5.624159 TCCCTTTGTATTATCATGCAGGAG 58.376 41.667 7.33 0.00 0.00 3.69
3402 3970 2.936032 GAGGTTGCCAGACCCCCT 60.936 66.667 0.00 0.00 40.73 4.79
3415 3983 4.161754 CCAGACCCCCTTTAGTAGTAGTTG 59.838 50.000 0.00 0.00 0.00 3.16
3701 4319 8.366401 ACATGGTTGTCATTATCATGTTTCAAA 58.634 29.630 0.00 0.00 43.79 2.69
3808 4449 9.093458 TCCTTGAGATTGCATATATCTTACTCA 57.907 33.333 1.03 0.00 32.64 3.41
3816 4457 6.695429 TGCATATATCTTACTCAAGGAGCAG 58.305 40.000 0.00 0.00 32.04 4.24
3817 4458 6.268617 TGCATATATCTTACTCAAGGAGCAGT 59.731 38.462 0.00 0.00 32.04 4.40
3818 4459 7.451566 TGCATATATCTTACTCAAGGAGCAGTA 59.548 37.037 0.00 0.00 32.04 2.74
3819 4460 8.307483 GCATATATCTTACTCAAGGAGCAGTAA 58.693 37.037 0.00 0.00 34.59 2.24
3824 4465 7.672983 TCTTACTCAAGGAGCAGTAATTTTG 57.327 36.000 0.00 0.00 35.14 2.44
3825 4466 7.224297 TCTTACTCAAGGAGCAGTAATTTTGT 58.776 34.615 0.00 0.00 35.14 2.83
3826 4467 5.695851 ACTCAAGGAGCAGTAATTTTGTG 57.304 39.130 0.00 0.00 32.04 3.33
3827 4468 5.133221 ACTCAAGGAGCAGTAATTTTGTGT 58.867 37.500 0.00 0.00 32.04 3.72
3828 4469 5.594317 ACTCAAGGAGCAGTAATTTTGTGTT 59.406 36.000 0.00 0.00 32.04 3.32
3829 4470 6.072112 TCAAGGAGCAGTAATTTTGTGTTC 57.928 37.500 0.00 0.00 0.00 3.18
3830 4471 5.009610 TCAAGGAGCAGTAATTTTGTGTTCC 59.990 40.000 8.39 8.39 40.79 3.62
3831 4472 4.729868 AGGAGCAGTAATTTTGTGTTCCT 58.270 39.130 11.61 11.61 44.48 3.36
3832 4473 5.876357 AGGAGCAGTAATTTTGTGTTCCTA 58.124 37.500 14.32 0.00 46.59 2.94
3833 4474 6.485171 AGGAGCAGTAATTTTGTGTTCCTAT 58.515 36.000 14.32 0.00 46.59 2.57
3834 4475 6.948309 AGGAGCAGTAATTTTGTGTTCCTATT 59.052 34.615 14.32 0.00 46.59 1.73
3835 4476 7.451566 AGGAGCAGTAATTTTGTGTTCCTATTT 59.548 33.333 14.32 0.00 46.59 1.40
3836 4477 8.088365 GGAGCAGTAATTTTGTGTTCCTATTTT 58.912 33.333 8.92 0.00 38.27 1.82
3837 4478 9.129209 GAGCAGTAATTTTGTGTTCCTATTTTC 57.871 33.333 0.00 0.00 0.00 2.29
3838 4479 8.088365 AGCAGTAATTTTGTGTTCCTATTTTCC 58.912 33.333 0.00 0.00 0.00 3.13
3839 4480 7.330946 GCAGTAATTTTGTGTTCCTATTTTCCC 59.669 37.037 0.00 0.00 0.00 3.97
3840 4481 8.585018 CAGTAATTTTGTGTTCCTATTTTCCCT 58.415 33.333 0.00 0.00 0.00 4.20
3841 4482 9.154632 AGTAATTTTGTGTTCCTATTTTCCCTT 57.845 29.630 0.00 0.00 0.00 3.95
3844 4485 9.772973 AATTTTGTGTTCCTATTTTCCCTTAAC 57.227 29.630 0.00 0.00 0.00 2.01
3845 4486 7.899648 TTTGTGTTCCTATTTTCCCTTAACA 57.100 32.000 0.00 0.00 0.00 2.41
3846 4487 6.887626 TGTGTTCCTATTTTCCCTTAACAC 57.112 37.500 0.00 0.00 43.30 3.32
3847 4488 5.470777 TGTGTTCCTATTTTCCCTTAACACG 59.529 40.000 0.00 0.00 44.98 4.49
3848 4489 4.456566 TGTTCCTATTTTCCCTTAACACGC 59.543 41.667 0.00 0.00 0.00 5.34
3849 4490 3.264104 TCCTATTTTCCCTTAACACGCG 58.736 45.455 3.53 3.53 0.00 6.01
3850 4491 2.223180 CCTATTTTCCCTTAACACGCGC 60.223 50.000 5.73 0.00 0.00 6.86
3851 4492 0.167251 ATTTTCCCTTAACACGCGCG 59.833 50.000 30.96 30.96 0.00 6.86
3852 4493 1.843734 TTTTCCCTTAACACGCGCGG 61.844 55.000 35.22 24.36 0.00 6.46
3853 4494 2.712325 TTTCCCTTAACACGCGCGGA 62.712 55.000 35.22 16.01 0.00 5.54
3854 4495 3.186047 CCCTTAACACGCGCGGAG 61.186 66.667 35.22 27.20 0.00 4.63
3855 4496 2.126228 CCTTAACACGCGCGGAGA 60.126 61.111 35.22 13.49 0.00 3.71
3856 4497 2.158959 CCTTAACACGCGCGGAGAG 61.159 63.158 35.22 21.98 0.00 3.20
3857 4498 1.443872 CTTAACACGCGCGGAGAGT 60.444 57.895 35.22 22.66 0.00 3.24
3865 4506 2.878429 CGCGGAGAGTGCTACTGT 59.122 61.111 0.00 0.00 0.00 3.55
3866 4507 2.095750 CGCGGAGAGTGCTACTGTA 58.904 57.895 0.00 0.00 0.00 2.74
3867 4508 0.450583 CGCGGAGAGTGCTACTGTAA 59.549 55.000 0.00 0.00 0.00 2.41
3868 4509 1.065701 CGCGGAGAGTGCTACTGTAAT 59.934 52.381 0.00 0.00 0.00 1.89
3869 4510 2.479730 CGCGGAGAGTGCTACTGTAATT 60.480 50.000 0.00 0.00 0.00 1.40
3870 4511 3.522553 GCGGAGAGTGCTACTGTAATTT 58.477 45.455 0.00 0.00 0.00 1.82
3871 4512 3.933332 GCGGAGAGTGCTACTGTAATTTT 59.067 43.478 0.00 0.00 0.00 1.82
3872 4513 5.107133 GCGGAGAGTGCTACTGTAATTTTA 58.893 41.667 0.00 0.00 0.00 1.52
3873 4514 5.005490 GCGGAGAGTGCTACTGTAATTTTAC 59.995 44.000 0.00 0.00 0.00 2.01
3874 4515 6.097356 CGGAGAGTGCTACTGTAATTTTACA 58.903 40.000 3.34 3.34 41.06 2.41
3875 4516 6.757010 CGGAGAGTGCTACTGTAATTTTACAT 59.243 38.462 3.76 0.00 42.26 2.29
3876 4517 7.254117 CGGAGAGTGCTACTGTAATTTTACATG 60.254 40.741 3.76 0.00 42.26 3.21
3877 4518 7.011482 GGAGAGTGCTACTGTAATTTTACATGG 59.989 40.741 3.76 0.00 42.26 3.66
3878 4519 7.394816 AGAGTGCTACTGTAATTTTACATGGT 58.605 34.615 3.76 2.92 42.26 3.55
3879 4520 7.883311 AGAGTGCTACTGTAATTTTACATGGTT 59.117 33.333 3.76 0.00 42.26 3.67
3880 4521 8.404107 AGTGCTACTGTAATTTTACATGGTTT 57.596 30.769 3.76 0.00 42.26 3.27
3881 4522 8.512138 AGTGCTACTGTAATTTTACATGGTTTC 58.488 33.333 3.76 0.00 42.26 2.78
3882 4523 8.293867 GTGCTACTGTAATTTTACATGGTTTCA 58.706 33.333 3.76 0.47 42.26 2.69
3883 4524 8.511321 TGCTACTGTAATTTTACATGGTTTCAG 58.489 33.333 3.76 0.81 42.26 3.02
3884 4525 8.726988 GCTACTGTAATTTTACATGGTTTCAGA 58.273 33.333 3.76 0.00 42.26 3.27
3886 4527 7.593825 ACTGTAATTTTACATGGTTTCAGAGC 58.406 34.615 3.76 0.00 42.26 4.09
3887 4528 7.448469 ACTGTAATTTTACATGGTTTCAGAGCT 59.552 33.333 3.76 0.00 42.26 4.09
3888 4529 8.177119 TGTAATTTTACATGGTTTCAGAGCTT 57.823 30.769 0.00 0.00 38.64 3.74
3889 4530 8.637986 TGTAATTTTACATGGTTTCAGAGCTTT 58.362 29.630 0.00 0.00 38.64 3.51
3890 4531 9.129209 GTAATTTTACATGGTTTCAGAGCTTTC 57.871 33.333 0.00 0.00 33.88 2.62
3891 4532 6.959639 TTTTACATGGTTTCAGAGCTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
3892 4533 6.959639 TTTACATGGTTTCAGAGCTTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
3893 4534 4.843220 ACATGGTTTCAGAGCTTTCTTG 57.157 40.909 0.00 0.00 0.00 3.02
3894 4535 3.571401 ACATGGTTTCAGAGCTTTCTTGG 59.429 43.478 0.00 0.00 0.00 3.61
3895 4536 3.576078 TGGTTTCAGAGCTTTCTTGGA 57.424 42.857 0.00 0.00 0.00 3.53
3896 4537 3.480470 TGGTTTCAGAGCTTTCTTGGAG 58.520 45.455 0.00 0.00 0.00 3.86
3897 4538 2.227626 GGTTTCAGAGCTTTCTTGGAGC 59.772 50.000 0.00 0.00 40.43 4.70
3906 4547 4.873768 GCTTTCTTGGAGCTAAGATGTC 57.126 45.455 0.00 0.00 36.63 3.06
3907 4548 3.308323 GCTTTCTTGGAGCTAAGATGTCG 59.692 47.826 0.00 0.00 36.63 4.35
3908 4549 3.526931 TTCTTGGAGCTAAGATGTCGG 57.473 47.619 0.00 0.00 36.63 4.79
3909 4550 2.457598 TCTTGGAGCTAAGATGTCGGT 58.542 47.619 0.00 0.00 32.02 4.69
3910 4551 3.628008 TCTTGGAGCTAAGATGTCGGTA 58.372 45.455 0.00 0.00 32.02 4.02
3911 4552 4.215908 TCTTGGAGCTAAGATGTCGGTAT 58.784 43.478 0.00 0.00 32.02 2.73
3912 4553 4.038042 TCTTGGAGCTAAGATGTCGGTATG 59.962 45.833 0.00 0.00 32.02 2.39
3913 4554 3.562182 TGGAGCTAAGATGTCGGTATGA 58.438 45.455 0.00 0.00 0.00 2.15
3914 4555 3.958147 TGGAGCTAAGATGTCGGTATGAA 59.042 43.478 0.00 0.00 0.00 2.57
3915 4556 4.038042 TGGAGCTAAGATGTCGGTATGAAG 59.962 45.833 0.00 0.00 0.00 3.02
3916 4557 3.983741 AGCTAAGATGTCGGTATGAAGC 58.016 45.455 0.00 0.00 0.00 3.86
3917 4558 3.384789 AGCTAAGATGTCGGTATGAAGCA 59.615 43.478 0.00 0.00 0.00 3.91
3918 4559 4.039730 AGCTAAGATGTCGGTATGAAGCAT 59.960 41.667 0.00 0.00 0.00 3.79
3919 4560 4.752101 GCTAAGATGTCGGTATGAAGCATT 59.248 41.667 0.00 0.00 0.00 3.56
3935 4576 3.409851 GCATTCTGCATGAATTCGTGA 57.590 42.857 28.01 13.74 43.00 4.35
3936 4577 3.761657 GCATTCTGCATGAATTCGTGAA 58.238 40.909 28.01 18.74 43.00 3.18
3937 4578 3.545078 GCATTCTGCATGAATTCGTGAAC 59.455 43.478 28.01 13.65 43.00 3.18
3938 4579 4.725359 CATTCTGCATGAATTCGTGAACA 58.275 39.130 28.01 17.01 43.00 3.18
3939 4580 4.827304 TTCTGCATGAATTCGTGAACAA 57.173 36.364 28.01 11.56 34.90 2.83
3940 4581 4.827304 TCTGCATGAATTCGTGAACAAA 57.173 36.364 28.01 4.73 34.90 2.83
3941 4582 5.375417 TCTGCATGAATTCGTGAACAAAT 57.625 34.783 28.01 0.00 34.90 2.32
3942 4583 5.155643 TCTGCATGAATTCGTGAACAAATG 58.844 37.500 28.01 11.81 34.90 2.32
3943 4584 3.674281 TGCATGAATTCGTGAACAAATGC 59.326 39.130 28.01 20.03 39.61 3.56
3944 4585 3.674281 GCATGAATTCGTGAACAAATGCA 59.326 39.130 28.01 0.00 39.13 3.96
3945 4586 4.433283 GCATGAATTCGTGAACAAATGCAC 60.433 41.667 28.01 5.52 39.13 4.57
3946 4587 4.566545 TGAATTCGTGAACAAATGCACT 57.433 36.364 0.04 0.00 32.98 4.40
3947 4588 4.289342 TGAATTCGTGAACAAATGCACTG 58.711 39.130 0.04 0.00 32.98 3.66
3948 4589 3.988379 ATTCGTGAACAAATGCACTGT 57.012 38.095 0.00 0.00 32.98 3.55
3949 4590 2.753989 TCGTGAACAAATGCACTGTG 57.246 45.000 2.76 2.76 32.98 3.66
3950 4591 2.284190 TCGTGAACAAATGCACTGTGA 58.716 42.857 12.86 0.00 32.98 3.58
3951 4592 2.680339 TCGTGAACAAATGCACTGTGAA 59.320 40.909 12.86 0.00 32.98 3.18
3952 4593 3.314913 TCGTGAACAAATGCACTGTGAAT 59.685 39.130 12.86 3.07 32.98 2.57
3953 4594 4.043750 CGTGAACAAATGCACTGTGAATT 58.956 39.130 12.86 10.40 32.98 2.17
3954 4595 5.008118 TCGTGAACAAATGCACTGTGAATTA 59.992 36.000 14.23 0.00 32.98 1.40
3955 4596 5.115472 CGTGAACAAATGCACTGTGAATTAC 59.885 40.000 14.23 7.68 32.98 1.89
3956 4597 5.976534 GTGAACAAATGCACTGTGAATTACA 59.023 36.000 14.23 9.60 37.78 2.41
3995 4636 1.244019 AAGATGGACAGGCGTTTGGC 61.244 55.000 0.00 0.00 42.51 4.52
4036 4677 8.896744 AGATGTTTTGTAATCATGATCGACATT 58.103 29.630 18.95 3.75 37.07 2.71
4113 4767 7.317722 ACATGAGGACTAGGAGTTTACTTTT 57.682 36.000 0.00 0.00 0.00 2.27
4114 4768 7.746703 ACATGAGGACTAGGAGTTTACTTTTT 58.253 34.615 0.00 0.00 0.00 1.94
4194 4937 1.697284 GAGGAGCCCAATCCAAATCC 58.303 55.000 0.00 0.00 42.26 3.01
4197 4940 1.025041 GAGCCCAATCCAAATCCGAC 58.975 55.000 0.00 0.00 0.00 4.79
4255 5003 2.482142 GGCCCACAAACACGATGAAAAA 60.482 45.455 0.00 0.00 0.00 1.94
4258 5006 3.184178 CCCACAAACACGATGAAAAATGC 59.816 43.478 0.00 0.00 0.00 3.56
4259 5007 3.184178 CCACAAACACGATGAAAAATGCC 59.816 43.478 0.00 0.00 0.00 4.40
4260 5008 3.801050 CACAAACACGATGAAAAATGCCA 59.199 39.130 0.00 0.00 0.00 4.92
4261 5009 4.269603 CACAAACACGATGAAAAATGCCAA 59.730 37.500 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.386711 AGTTTAGGGTTTCCACGAAGAAG 58.613 43.478 0.00 0.00 34.83 2.85
1 2 4.426736 AGTTTAGGGTTTCCACGAAGAA 57.573 40.909 0.00 0.00 34.83 2.52
3 4 5.066764 TCAAAAGTTTAGGGTTTCCACGAAG 59.933 40.000 0.00 0.00 34.83 3.79
4 5 4.948621 TCAAAAGTTTAGGGTTTCCACGAA 59.051 37.500 0.00 0.00 34.83 3.85
6 7 4.904253 TCAAAAGTTTAGGGTTTCCACG 57.096 40.909 0.00 0.00 34.83 4.94
7 8 7.011950 CCAAAATCAAAAGTTTAGGGTTTCCAC 59.988 37.037 0.00 0.00 34.83 4.02
9 10 6.485313 CCCAAAATCAAAAGTTTAGGGTTTCC 59.515 38.462 0.00 0.00 31.67 3.13
11 12 5.825679 GCCCAAAATCAAAAGTTTAGGGTTT 59.174 36.000 0.00 0.00 35.27 3.27
44 94 3.244033 AGATCTGAACCTGCTCTTTCG 57.756 47.619 0.00 0.00 0.00 3.46
68 118 6.192044 AGACAAGAAGAAAACAAAAGGGGTA 58.808 36.000 0.00 0.00 0.00 3.69
126 176 2.554344 GGCATGTACCCAGAAGAAACCA 60.554 50.000 0.00 0.00 0.00 3.67
127 177 2.092323 GGCATGTACCCAGAAGAAACC 58.908 52.381 0.00 0.00 0.00 3.27
128 178 2.790433 TGGCATGTACCCAGAAGAAAC 58.210 47.619 0.00 0.00 0.00 2.78
152 202 7.254658 CGGTCAAACTGAAATGTACTGTACTTT 60.255 37.037 17.98 14.79 0.00 2.66
159 209 4.062991 GGACGGTCAAACTGAAATGTACT 58.937 43.478 10.76 0.00 0.00 2.73
160 210 3.187842 GGGACGGTCAAACTGAAATGTAC 59.812 47.826 10.76 0.00 0.00 2.90
161 211 3.181453 TGGGACGGTCAAACTGAAATGTA 60.181 43.478 10.76 0.00 0.00 2.29
162 212 2.227194 GGGACGGTCAAACTGAAATGT 58.773 47.619 10.76 0.00 0.00 2.71
163 213 2.226330 TGGGACGGTCAAACTGAAATG 58.774 47.619 10.76 0.00 0.00 2.32
164 214 2.504367 CTGGGACGGTCAAACTGAAAT 58.496 47.619 10.76 0.00 0.00 2.17
165 215 1.961793 CTGGGACGGTCAAACTGAAA 58.038 50.000 10.76 0.00 0.00 2.69
166 216 0.534203 GCTGGGACGGTCAAACTGAA 60.534 55.000 10.76 0.00 36.83 3.02
167 217 1.070786 GCTGGGACGGTCAAACTGA 59.929 57.895 10.76 0.00 36.83 3.41
168 218 1.966451 GGCTGGGACGGTCAAACTG 60.966 63.158 10.76 5.10 40.39 3.16
169 219 1.705997 AAGGCTGGGACGGTCAAACT 61.706 55.000 10.76 0.00 45.26 2.66
170 220 1.228154 AAGGCTGGGACGGTCAAAC 60.228 57.895 10.76 0.27 45.26 2.93
171 221 1.072505 GAAGGCTGGGACGGTCAAA 59.927 57.895 10.76 0.00 45.26 2.69
172 222 2.747686 GAAGGCTGGGACGGTCAA 59.252 61.111 10.76 0.00 45.26 3.18
173 223 3.691342 CGAAGGCTGGGACGGTCA 61.691 66.667 10.76 0.00 45.26 4.02
174 224 2.240162 AATCGAAGGCTGGGACGGTC 62.240 60.000 0.00 0.00 41.46 4.79
175 225 2.240162 GAATCGAAGGCTGGGACGGT 62.240 60.000 0.00 0.00 36.83 4.83
176 226 1.521681 GAATCGAAGGCTGGGACGG 60.522 63.158 0.00 0.00 38.10 4.79
177 227 1.878522 CGAATCGAAGGCTGGGACG 60.879 63.158 0.00 0.00 0.00 4.79
178 228 0.391263 AACGAATCGAAGGCTGGGAC 60.391 55.000 10.55 0.00 0.00 4.46
179 229 0.391130 CAACGAATCGAAGGCTGGGA 60.391 55.000 10.55 0.00 0.00 4.37
180 230 0.673644 ACAACGAATCGAAGGCTGGG 60.674 55.000 10.55 0.00 0.00 4.45
181 231 0.443869 CACAACGAATCGAAGGCTGG 59.556 55.000 10.55 0.00 0.00 4.85
182 232 0.179215 GCACAACGAATCGAAGGCTG 60.179 55.000 10.55 1.04 0.00 4.85
183 233 2.162716 GCACAACGAATCGAAGGCT 58.837 52.632 10.55 0.00 0.00 4.58
184 234 4.745549 GCACAACGAATCGAAGGC 57.254 55.556 10.55 3.61 0.00 4.35
194 244 1.731709 TCATCTGGAAATCGCACAACG 59.268 47.619 0.00 0.00 45.62 4.10
195 245 4.361451 AATCATCTGGAAATCGCACAAC 57.639 40.909 0.00 0.00 0.00 3.32
196 246 5.389859 AAAATCATCTGGAAATCGCACAA 57.610 34.783 0.00 0.00 0.00 3.33
197 247 5.647658 AGTAAAATCATCTGGAAATCGCACA 59.352 36.000 0.00 0.00 0.00 4.57
198 248 6.124088 AGTAAAATCATCTGGAAATCGCAC 57.876 37.500 0.00 0.00 0.00 5.34
199 249 6.599244 AGAAGTAAAATCATCTGGAAATCGCA 59.401 34.615 0.00 0.00 0.00 5.10
200 250 7.020914 AGAAGTAAAATCATCTGGAAATCGC 57.979 36.000 0.00 0.00 0.00 4.58
201 251 9.495754 GAAAGAAGTAAAATCATCTGGAAATCG 57.504 33.333 0.00 0.00 0.00 3.34
202 252 9.495754 CGAAAGAAGTAAAATCATCTGGAAATC 57.504 33.333 0.00 0.00 0.00 2.17
203 253 7.970614 GCGAAAGAAGTAAAATCATCTGGAAAT 59.029 33.333 0.00 0.00 0.00 2.17
204 254 7.305474 GCGAAAGAAGTAAAATCATCTGGAAA 58.695 34.615 0.00 0.00 0.00 3.13
205 255 6.128007 GGCGAAAGAAGTAAAATCATCTGGAA 60.128 38.462 0.00 0.00 0.00 3.53
206 256 5.354234 GGCGAAAGAAGTAAAATCATCTGGA 59.646 40.000 0.00 0.00 0.00 3.86
207 257 5.123820 TGGCGAAAGAAGTAAAATCATCTGG 59.876 40.000 0.00 0.00 0.00 3.86
208 258 6.182039 TGGCGAAAGAAGTAAAATCATCTG 57.818 37.500 0.00 0.00 0.00 2.90
209 259 6.817765 TTGGCGAAAGAAGTAAAATCATCT 57.182 33.333 0.00 0.00 0.00 2.90
210 260 7.029563 ACATTGGCGAAAGAAGTAAAATCATC 58.970 34.615 0.00 0.00 0.00 2.92
211 261 6.924111 ACATTGGCGAAAGAAGTAAAATCAT 58.076 32.000 0.00 0.00 0.00 2.45
212 262 6.325919 ACATTGGCGAAAGAAGTAAAATCA 57.674 33.333 0.00 0.00 0.00 2.57
213 263 6.640907 ACAACATTGGCGAAAGAAGTAAAATC 59.359 34.615 0.00 0.00 0.00 2.17
214 264 6.420604 CACAACATTGGCGAAAGAAGTAAAAT 59.579 34.615 0.00 0.00 0.00 1.82
215 265 5.746245 CACAACATTGGCGAAAGAAGTAAAA 59.254 36.000 0.00 0.00 0.00 1.52
216 266 5.277825 CACAACATTGGCGAAAGAAGTAAA 58.722 37.500 0.00 0.00 0.00 2.01
217 267 4.261405 CCACAACATTGGCGAAAGAAGTAA 60.261 41.667 0.00 0.00 0.00 2.24
218 268 3.252215 CCACAACATTGGCGAAAGAAGTA 59.748 43.478 0.00 0.00 0.00 2.24
219 269 2.034558 CCACAACATTGGCGAAAGAAGT 59.965 45.455 0.00 0.00 0.00 3.01
220 270 2.034558 ACCACAACATTGGCGAAAGAAG 59.965 45.455 0.00 0.00 40.77 2.85
221 271 2.028130 ACCACAACATTGGCGAAAGAA 58.972 42.857 0.00 0.00 40.77 2.52
222 272 1.686355 ACCACAACATTGGCGAAAGA 58.314 45.000 0.00 0.00 40.77 2.52
223 273 3.634568 TTACCACAACATTGGCGAAAG 57.365 42.857 0.00 0.00 40.77 2.62
224 274 3.243569 CCTTTACCACAACATTGGCGAAA 60.244 43.478 0.00 0.00 40.77 3.46
225 275 2.294791 CCTTTACCACAACATTGGCGAA 59.705 45.455 0.00 0.00 40.77 4.70
226 276 1.883275 CCTTTACCACAACATTGGCGA 59.117 47.619 0.00 0.00 40.77 5.54
227 277 1.067915 CCCTTTACCACAACATTGGCG 60.068 52.381 0.00 0.00 40.77 5.69
228 278 2.231235 CTCCCTTTACCACAACATTGGC 59.769 50.000 0.00 0.00 40.77 4.52
229 279 2.231235 GCTCCCTTTACCACAACATTGG 59.769 50.000 0.00 0.00 43.04 3.16
230 280 2.095263 CGCTCCCTTTACCACAACATTG 60.095 50.000 0.00 0.00 0.00 2.82
231 281 2.159382 CGCTCCCTTTACCACAACATT 58.841 47.619 0.00 0.00 0.00 2.71
232 282 1.073284 ACGCTCCCTTTACCACAACAT 59.927 47.619 0.00 0.00 0.00 2.71
233 283 0.470766 ACGCTCCCTTTACCACAACA 59.529 50.000 0.00 0.00 0.00 3.33
234 284 1.601166 AACGCTCCCTTTACCACAAC 58.399 50.000 0.00 0.00 0.00 3.32
235 285 1.950909 CAAACGCTCCCTTTACCACAA 59.049 47.619 0.00 0.00 0.00 3.33
236 286 1.134037 ACAAACGCTCCCTTTACCACA 60.134 47.619 0.00 0.00 0.00 4.17
237 287 1.601166 ACAAACGCTCCCTTTACCAC 58.399 50.000 0.00 0.00 0.00 4.16
238 288 2.223745 GAACAAACGCTCCCTTTACCA 58.776 47.619 0.00 0.00 0.00 3.25
239 289 1.196127 CGAACAAACGCTCCCTTTACC 59.804 52.381 0.00 0.00 0.00 2.85
240 290 1.869132 ACGAACAAACGCTCCCTTTAC 59.131 47.619 0.00 0.00 36.70 2.01
241 291 1.868498 CACGAACAAACGCTCCCTTTA 59.132 47.619 0.00 0.00 36.70 1.85
242 292 0.661020 CACGAACAAACGCTCCCTTT 59.339 50.000 0.00 0.00 36.70 3.11
243 293 0.463116 ACACGAACAAACGCTCCCTT 60.463 50.000 0.00 0.00 36.70 3.95
244 294 0.878961 GACACGAACAAACGCTCCCT 60.879 55.000 0.00 0.00 36.70 4.20
245 295 1.568025 GACACGAACAAACGCTCCC 59.432 57.895 0.00 0.00 36.70 4.30
246 296 1.568025 GGACACGAACAAACGCTCC 59.432 57.895 0.00 0.00 36.70 4.70
247 297 1.568025 GGGACACGAACAAACGCTC 59.432 57.895 0.00 0.00 36.70 5.03
248 298 1.890510 GGGGACACGAACAAACGCT 60.891 57.895 0.00 0.00 36.70 5.07
249 299 2.635338 GGGGACACGAACAAACGC 59.365 61.111 0.00 0.00 36.70 4.84
250 300 3.336566 GGGGGACACGAACAAACG 58.663 61.111 0.00 0.00 39.31 3.60
265 315 4.179599 GAGGGGAGGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
266 316 2.613576 GAAGAGGGGAGGAGGGAGGG 62.614 70.000 0.00 0.00 0.00 4.30
267 317 1.074850 GAAGAGGGGAGGAGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
268 318 0.398381 CAGAAGAGGGGAGGAGGGAG 60.398 65.000 0.00 0.00 0.00 4.30
269 319 1.706575 CAGAAGAGGGGAGGAGGGA 59.293 63.158 0.00 0.00 0.00 4.20
270 320 2.069430 GCAGAAGAGGGGAGGAGGG 61.069 68.421 0.00 0.00 0.00 4.30
271 321 0.263172 TAGCAGAAGAGGGGAGGAGG 59.737 60.000 0.00 0.00 0.00 4.30
272 322 2.397044 ATAGCAGAAGAGGGGAGGAG 57.603 55.000 0.00 0.00 0.00 3.69
273 323 2.248686 AGAATAGCAGAAGAGGGGAGGA 59.751 50.000 0.00 0.00 0.00 3.71
274 324 2.688477 AGAATAGCAGAAGAGGGGAGG 58.312 52.381 0.00 0.00 0.00 4.30
275 325 4.283212 CCTTAGAATAGCAGAAGAGGGGAG 59.717 50.000 0.00 0.00 0.00 4.30
276 326 4.227197 CCTTAGAATAGCAGAAGAGGGGA 58.773 47.826 0.00 0.00 0.00 4.81
277 327 3.326297 CCCTTAGAATAGCAGAAGAGGGG 59.674 52.174 0.00 0.00 39.11 4.79
278 328 3.326297 CCCCTTAGAATAGCAGAAGAGGG 59.674 52.174 0.00 0.00 41.79 4.30
279 329 3.326297 CCCCCTTAGAATAGCAGAAGAGG 59.674 52.174 0.00 0.00 0.00 3.69
280 330 4.615588 CCCCCTTAGAATAGCAGAAGAG 57.384 50.000 0.00 0.00 0.00 2.85
298 348 1.000843 GAATGCAGTGTGTTTTCCCCC 59.999 52.381 0.00 0.00 0.00 5.40
299 349 1.963515 AGAATGCAGTGTGTTTTCCCC 59.036 47.619 0.00 0.00 0.00 4.81
300 350 3.383761 CAAGAATGCAGTGTGTTTTCCC 58.616 45.455 0.00 0.00 0.00 3.97
322 372 2.741878 CGGGTGAAGTACTGCCTAATGG 60.742 54.545 0.00 0.00 0.00 3.16
385 853 7.383300 CCAAGAAAAAGCACTAAATTCAGGAAG 59.617 37.037 0.00 0.00 0.00 3.46
493 963 6.510746 GAAAACATTTTCTCCAACTTTCGG 57.489 37.500 9.39 0.00 42.42 4.30
509 979 7.053498 ACCCATAAAACAAAGCAAGAAAACAT 58.947 30.769 0.00 0.00 0.00 2.71
549 1024 6.651975 AGTTGCCCTGATATGTAGTAGTAC 57.348 41.667 0.37 0.37 0.00 2.73
550 1025 7.752638 TCTAGTTGCCCTGATATGTAGTAGTA 58.247 38.462 0.00 0.00 0.00 1.82
551 1026 6.611785 TCTAGTTGCCCTGATATGTAGTAGT 58.388 40.000 0.00 0.00 0.00 2.73
553 1028 8.492415 AAATCTAGTTGCCCTGATATGTAGTA 57.508 34.615 0.00 0.00 0.00 1.82
555 1030 6.587990 CGAAATCTAGTTGCCCTGATATGTAG 59.412 42.308 0.00 0.00 0.00 2.74
556 1031 6.455647 CGAAATCTAGTTGCCCTGATATGTA 58.544 40.000 0.00 0.00 0.00 2.29
558 1033 4.692625 CCGAAATCTAGTTGCCCTGATATG 59.307 45.833 0.00 0.00 0.00 1.78
560 1035 3.709653 ACCGAAATCTAGTTGCCCTGATA 59.290 43.478 0.00 0.00 0.00 2.15
561 1036 2.505819 ACCGAAATCTAGTTGCCCTGAT 59.494 45.455 0.00 0.00 0.00 2.90
562 1037 1.906574 ACCGAAATCTAGTTGCCCTGA 59.093 47.619 0.00 0.00 0.00 3.86
580 1055 3.574826 TGTAATTAGCACCCCACAAAACC 59.425 43.478 0.00 0.00 0.00 3.27
600 1075 4.536090 TCAGGTGAGTGAAGGGATTTATGT 59.464 41.667 0.00 0.00 0.00 2.29
708 1184 1.040646 AACACGCAGAGAAGACCTCA 58.959 50.000 0.00 0.00 44.40 3.86
709 1185 2.062519 GAAACACGCAGAGAAGACCTC 58.937 52.381 0.00 0.00 42.28 3.85
710 1186 1.689273 AGAAACACGCAGAGAAGACCT 59.311 47.619 0.00 0.00 0.00 3.85
711 1187 2.156343 AGAAACACGCAGAGAAGACC 57.844 50.000 0.00 0.00 0.00 3.85
723 1199 3.430218 CACTGACGAGATCCAAGAAACAC 59.570 47.826 0.00 0.00 0.00 3.32
747 1223 6.867519 TCAGGGAGTAATGTGACAGATTAA 57.132 37.500 6.61 0.00 0.00 1.40
750 1226 5.965033 AATCAGGGAGTAATGTGACAGAT 57.035 39.130 0.00 0.00 0.00 2.90
752 1228 6.824305 AAAAATCAGGGAGTAATGTGACAG 57.176 37.500 0.00 0.00 0.00 3.51
753 1229 7.458397 AGTAAAAATCAGGGAGTAATGTGACA 58.542 34.615 0.00 0.00 0.00 3.58
755 1231 7.685481 TGAGTAAAAATCAGGGAGTAATGTGA 58.315 34.615 0.00 0.00 0.00 3.58
756 1232 7.921786 TGAGTAAAAATCAGGGAGTAATGTG 57.078 36.000 0.00 0.00 0.00 3.21
757 1233 8.328758 TCATGAGTAAAAATCAGGGAGTAATGT 58.671 33.333 0.00 0.00 0.00 2.71
784 1260 8.843885 AGGAGTACTTACTGTGGATTTTTAAC 57.156 34.615 0.00 0.00 36.50 2.01
787 1263 8.762481 AAAAGGAGTACTTACTGTGGATTTTT 57.238 30.769 0.00 0.00 38.85 1.94
851 1327 1.416030 TCTGACAGTTTGTGCCTAGCA 59.584 47.619 1.59 0.00 35.60 3.49
1009 1524 2.825836 GCGGGCTGTTGCTATGCT 60.826 61.111 0.00 0.00 39.59 3.79
1107 1622 1.548719 TCTATGACCTCACCAACCACG 59.451 52.381 0.00 0.00 0.00 4.94
1119 1634 4.588528 AGCATCTCCTTCTCTTCTATGACC 59.411 45.833 0.00 0.00 0.00 4.02
1149 1664 9.770097 GAAAGAGATTACAGACCATGATAATCA 57.230 33.333 0.00 0.00 35.99 2.57
1212 1727 4.142609 TGATCACAAGAGTTATCAGGGC 57.857 45.455 0.00 0.00 34.37 5.19
1261 1776 1.724623 GCACGACAACGATGAAGCTTA 59.275 47.619 0.00 0.00 42.66 3.09
1349 1864 0.469705 AGTGCTGCCAAAATGTCCCA 60.470 50.000 0.00 0.00 0.00 4.37
1452 1967 6.434340 CCTTACAAGCTCCAACTCCTTTTTAT 59.566 38.462 0.00 0.00 0.00 1.40
1463 1978 3.412386 GCTTCTTCCTTACAAGCTCCAA 58.588 45.455 0.00 0.00 39.61 3.53
1476 1991 2.039084 TCCCAGTCTTGAAGCTTCTTCC 59.961 50.000 26.09 11.92 0.00 3.46
1659 2175 8.091385 TGCATGTCAATATGATGAACAGATAC 57.909 34.615 0.00 0.00 29.74 2.24
1678 2194 4.460263 TCTGAAGGTGTTAAGTTGCATGT 58.540 39.130 0.00 0.00 0.00 3.21
1982 2503 3.220940 TGTCATCATTTGTGCTTGGTGA 58.779 40.909 0.00 0.00 30.72 4.02
1994 2515 0.632835 AGGGCCACCATGTCATCATT 59.367 50.000 6.18 0.00 40.13 2.57
2358 2879 0.536006 AGCTTCCCACAACTGTCAGC 60.536 55.000 0.00 0.00 0.00 4.26
2359 2880 1.876156 GAAGCTTCCCACAACTGTCAG 59.124 52.381 15.97 0.00 0.00 3.51
2372 2893 2.709213 AGTCAGATGCCAAGAAGCTTC 58.291 47.619 19.11 19.11 37.23 3.86
2475 2996 4.279169 CCATTCCTTCTTCAGTTCTTGCAA 59.721 41.667 0.00 0.00 0.00 4.08
2505 3026 0.995024 ATGACAGCTTTGTAGGGGCT 59.005 50.000 0.00 0.00 36.70 5.19
2721 3242 5.342433 TGCTATCATCGCCAAAATGAAAAG 58.658 37.500 0.00 0.00 36.75 2.27
2789 3310 1.063792 ACACAAGCATATGGGCATGGA 60.064 47.619 4.56 0.00 36.84 3.41
2794 3315 5.043248 GTGATTAAACACAAGCATATGGGC 58.957 41.667 10.70 0.00 40.11 5.36
2977 3503 3.611766 ACCTTGAGATTTCTACGGTGG 57.388 47.619 0.00 0.00 0.00 4.61
2978 3504 6.594159 ACATTTACCTTGAGATTTCTACGGTG 59.406 38.462 0.00 0.00 0.00 4.94
2979 3505 6.708285 ACATTTACCTTGAGATTTCTACGGT 58.292 36.000 0.00 0.00 0.00 4.83
2980 3506 7.611213 AACATTTACCTTGAGATTTCTACGG 57.389 36.000 0.00 0.00 0.00 4.02
2981 3507 7.481798 GCAAACATTTACCTTGAGATTTCTACG 59.518 37.037 0.00 0.00 0.00 3.51
2982 3508 7.481798 CGCAAACATTTACCTTGAGATTTCTAC 59.518 37.037 0.00 0.00 0.00 2.59
2983 3509 7.174253 ACGCAAACATTTACCTTGAGATTTCTA 59.826 33.333 0.00 0.00 0.00 2.10
2984 3510 6.016276 ACGCAAACATTTACCTTGAGATTTCT 60.016 34.615 0.00 0.00 0.00 2.52
2985 3511 6.088085 CACGCAAACATTTACCTTGAGATTTC 59.912 38.462 0.00 0.00 0.00 2.17
2986 3512 5.920273 CACGCAAACATTTACCTTGAGATTT 59.080 36.000 0.00 0.00 0.00 2.17
2987 3513 5.240623 TCACGCAAACATTTACCTTGAGATT 59.759 36.000 0.00 0.00 0.00 2.40
2988 3514 4.759693 TCACGCAAACATTTACCTTGAGAT 59.240 37.500 0.00 0.00 0.00 2.75
2989 3515 4.130857 TCACGCAAACATTTACCTTGAGA 58.869 39.130 0.00 0.00 0.00 3.27
2990 3516 4.481930 TCACGCAAACATTTACCTTGAG 57.518 40.909 0.00 0.00 0.00 3.02
2991 3517 5.470437 TGTATCACGCAAACATTTACCTTGA 59.530 36.000 0.00 0.00 0.00 3.02
2992 3518 5.694816 TGTATCACGCAAACATTTACCTTG 58.305 37.500 0.00 0.00 0.00 3.61
2993 3519 5.703592 TCTGTATCACGCAAACATTTACCTT 59.296 36.000 0.00 0.00 0.00 3.50
2994 3520 5.121768 GTCTGTATCACGCAAACATTTACCT 59.878 40.000 0.00 0.00 0.00 3.08
2995 3521 5.106869 TGTCTGTATCACGCAAACATTTACC 60.107 40.000 0.00 0.00 0.00 2.85
2996 3522 5.922546 TGTCTGTATCACGCAAACATTTAC 58.077 37.500 0.00 0.00 0.00 2.01
2997 3523 5.121611 CCTGTCTGTATCACGCAAACATTTA 59.878 40.000 0.00 0.00 0.00 1.40
2998 3524 4.083324 CCTGTCTGTATCACGCAAACATTT 60.083 41.667 0.00 0.00 0.00 2.32
3007 3533 2.654749 TTCTGCCTGTCTGTATCACG 57.345 50.000 0.00 0.00 0.00 4.35
3013 3539 1.065126 GGCCTTATTCTGCCTGTCTGT 60.065 52.381 0.00 0.00 44.46 3.41
3061 3587 5.178067 GTGGAATTGCTCTTTGTTTCAATGG 59.822 40.000 0.00 0.00 30.47 3.16
3076 3602 3.304928 CCAAGAACTCAGTGTGGAATTGC 60.305 47.826 0.00 0.00 0.00 3.56
3117 3643 5.006941 CCTGCATCACACAAAAAGAAAAAGG 59.993 40.000 0.00 0.00 0.00 3.11
3119 3645 4.332268 GCCTGCATCACACAAAAAGAAAAA 59.668 37.500 0.00 0.00 0.00 1.94
3194 3722 5.152097 CAAGCTTTCATTGCTGTAACAGAG 58.848 41.667 0.00 0.00 41.03 3.35
3244 3772 3.996150 CACAGATGCAGGTTTCTTGTT 57.004 42.857 0.00 0.00 0.00 2.83
3254 3822 4.034163 CTGATTTCAGTAGCACAGATGCAG 59.966 45.833 1.61 0.00 45.45 4.41
3276 3844 4.026356 AGTAAGCTGCTTTGGTGATTCT 57.974 40.909 21.29 4.20 0.00 2.40
3277 3845 4.022849 ACAAGTAAGCTGCTTTGGTGATTC 60.023 41.667 21.29 2.13 0.00 2.52
3278 3846 3.891366 ACAAGTAAGCTGCTTTGGTGATT 59.109 39.130 21.29 4.22 0.00 2.57
3279 3847 3.490348 ACAAGTAAGCTGCTTTGGTGAT 58.510 40.909 21.29 0.00 0.00 3.06
3280 3848 2.930950 ACAAGTAAGCTGCTTTGGTGA 58.069 42.857 21.29 0.00 0.00 4.02
3281 3849 3.058224 GGTACAAGTAAGCTGCTTTGGTG 60.058 47.826 21.29 16.70 0.00 4.17
3346 3914 2.039480 TCTTGCAGGAGCCATCATATCC 59.961 50.000 0.00 0.00 41.13 2.59
3402 3970 9.472361 CAGTTTTACTGCTCAACTACTACTAAA 57.528 33.333 0.00 0.00 39.62 1.85
3461 4029 0.768221 TTCCCCTCTCTTGCCACAGT 60.768 55.000 0.00 0.00 0.00 3.55
3649 4267 3.070018 GCATGCACTTCACTACTTCAGT 58.930 45.455 14.21 0.00 38.32 3.41
3701 4319 3.827302 CTGCTACTAGATACCCAACGGAT 59.173 47.826 0.00 0.00 0.00 4.18
3808 4449 5.140454 AGGAACACAAAATTACTGCTCCTT 58.860 37.500 0.00 0.00 0.00 3.36
3818 4459 9.772973 GTTAAGGGAAAATAGGAACACAAAATT 57.227 29.630 0.00 0.00 0.00 1.82
3819 4460 8.929487 TGTTAAGGGAAAATAGGAACACAAAAT 58.071 29.630 0.00 0.00 0.00 1.82
3820 4461 8.198778 GTGTTAAGGGAAAATAGGAACACAAAA 58.801 33.333 9.46 0.00 42.85 2.44
3821 4462 7.468906 CGTGTTAAGGGAAAATAGGAACACAAA 60.469 37.037 13.52 0.00 43.27 2.83
3822 4463 6.016943 CGTGTTAAGGGAAAATAGGAACACAA 60.017 38.462 13.52 0.00 43.27 3.33
3823 4464 5.470777 CGTGTTAAGGGAAAATAGGAACACA 59.529 40.000 13.52 0.00 43.27 3.72
3824 4465 5.618418 GCGTGTTAAGGGAAAATAGGAACAC 60.618 44.000 0.00 0.00 40.96 3.32
3825 4466 4.456566 GCGTGTTAAGGGAAAATAGGAACA 59.543 41.667 0.00 0.00 0.00 3.18
3826 4467 4.436451 CGCGTGTTAAGGGAAAATAGGAAC 60.436 45.833 0.00 0.00 0.00 3.62
3827 4468 3.685756 CGCGTGTTAAGGGAAAATAGGAA 59.314 43.478 0.00 0.00 0.00 3.36
3828 4469 3.264104 CGCGTGTTAAGGGAAAATAGGA 58.736 45.455 0.00 0.00 0.00 2.94
3829 4470 2.223180 GCGCGTGTTAAGGGAAAATAGG 60.223 50.000 8.43 0.00 0.00 2.57
3830 4471 2.536130 CGCGCGTGTTAAGGGAAAATAG 60.536 50.000 24.19 0.00 0.00 1.73
3831 4472 1.394227 CGCGCGTGTTAAGGGAAAATA 59.606 47.619 24.19 0.00 0.00 1.40
3832 4473 0.167251 CGCGCGTGTTAAGGGAAAAT 59.833 50.000 24.19 0.00 0.00 1.82
3833 4474 1.570475 CGCGCGTGTTAAGGGAAAA 59.430 52.632 24.19 0.00 0.00 2.29
3834 4475 2.319096 CCGCGCGTGTTAAGGGAAA 61.319 57.895 29.95 0.00 0.00 3.13
3835 4476 2.739287 CCGCGCGTGTTAAGGGAA 60.739 61.111 29.95 0.00 0.00 3.97
3836 4477 3.636313 CTCCGCGCGTGTTAAGGGA 62.636 63.158 29.95 14.74 0.00 4.20
3837 4478 3.186047 CTCCGCGCGTGTTAAGGG 61.186 66.667 29.95 8.17 0.00 3.95
3838 4479 2.126228 TCTCCGCGCGTGTTAAGG 60.126 61.111 29.95 11.58 0.00 2.69
3839 4480 1.443872 ACTCTCCGCGCGTGTTAAG 60.444 57.895 29.95 19.24 0.00 1.85
3840 4481 1.731613 CACTCTCCGCGCGTGTTAA 60.732 57.895 29.95 8.21 0.00 2.01
3841 4482 2.126618 CACTCTCCGCGCGTGTTA 60.127 61.111 29.95 10.11 0.00 2.41
3844 4485 4.476410 TAGCACTCTCCGCGCGTG 62.476 66.667 29.95 20.60 0.00 5.34
3845 4486 4.477975 GTAGCACTCTCCGCGCGT 62.478 66.667 29.95 10.01 0.00 6.01
3846 4487 4.180946 AGTAGCACTCTCCGCGCG 62.181 66.667 25.67 25.67 0.00 6.86
3847 4488 1.989966 TACAGTAGCACTCTCCGCGC 61.990 60.000 0.00 0.00 0.00 6.86
3848 4489 0.450583 TTACAGTAGCACTCTCCGCG 59.549 55.000 0.00 0.00 0.00 6.46
3849 4490 2.873133 ATTACAGTAGCACTCTCCGC 57.127 50.000 0.00 0.00 0.00 5.54
3850 4491 6.097356 TGTAAAATTACAGTAGCACTCTCCG 58.903 40.000 1.96 0.00 38.64 4.63
3851 4492 7.011482 CCATGTAAAATTACAGTAGCACTCTCC 59.989 40.741 11.28 0.00 45.80 3.71
3852 4493 7.549488 ACCATGTAAAATTACAGTAGCACTCTC 59.451 37.037 11.28 0.00 45.80 3.20
3853 4494 7.394816 ACCATGTAAAATTACAGTAGCACTCT 58.605 34.615 11.28 0.00 45.80 3.24
3854 4495 7.611213 ACCATGTAAAATTACAGTAGCACTC 57.389 36.000 11.28 0.00 45.80 3.51
3855 4496 7.996098 AACCATGTAAAATTACAGTAGCACT 57.004 32.000 11.28 0.00 45.80 4.40
3856 4497 8.293867 TGAAACCATGTAAAATTACAGTAGCAC 58.706 33.333 11.28 3.81 45.80 4.40
3857 4498 8.397575 TGAAACCATGTAAAATTACAGTAGCA 57.602 30.769 11.28 4.95 45.80 3.49
3858 4499 8.726988 TCTGAAACCATGTAAAATTACAGTAGC 58.273 33.333 11.28 2.99 45.80 3.58
3860 4501 8.726988 GCTCTGAAACCATGTAAAATTACAGTA 58.273 33.333 11.28 0.00 45.80 2.74
3861 4502 7.448469 AGCTCTGAAACCATGTAAAATTACAGT 59.552 33.333 11.28 3.02 45.80 3.55
3862 4503 7.820648 AGCTCTGAAACCATGTAAAATTACAG 58.179 34.615 11.28 2.47 45.80 2.74
3863 4504 7.759489 AGCTCTGAAACCATGTAAAATTACA 57.241 32.000 8.34 8.34 46.55 2.41
3864 4505 9.129209 GAAAGCTCTGAAACCATGTAAAATTAC 57.871 33.333 0.00 0.00 0.00 1.89
3865 4506 9.077885 AGAAAGCTCTGAAACCATGTAAAATTA 57.922 29.630 0.00 0.00 0.00 1.40
3866 4507 7.955918 AGAAAGCTCTGAAACCATGTAAAATT 58.044 30.769 0.00 0.00 0.00 1.82
3867 4508 7.530426 AGAAAGCTCTGAAACCATGTAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
3868 4509 6.959639 AGAAAGCTCTGAAACCATGTAAAA 57.040 33.333 0.00 0.00 0.00 1.52
3869 4510 6.239008 CCAAGAAAGCTCTGAAACCATGTAAA 60.239 38.462 0.00 0.00 30.03 2.01
3870 4511 5.241506 CCAAGAAAGCTCTGAAACCATGTAA 59.758 40.000 0.00 0.00 30.03 2.41
3871 4512 4.761739 CCAAGAAAGCTCTGAAACCATGTA 59.238 41.667 0.00 0.00 30.03 2.29
3872 4513 3.571401 CCAAGAAAGCTCTGAAACCATGT 59.429 43.478 0.00 0.00 30.03 3.21
3873 4514 3.822735 TCCAAGAAAGCTCTGAAACCATG 59.177 43.478 0.00 0.00 30.03 3.66
3874 4515 4.077822 CTCCAAGAAAGCTCTGAAACCAT 58.922 43.478 0.00 0.00 30.03 3.55
3875 4516 3.480470 CTCCAAGAAAGCTCTGAAACCA 58.520 45.455 0.00 0.00 30.03 3.67
3876 4517 2.227626 GCTCCAAGAAAGCTCTGAAACC 59.772 50.000 0.00 0.00 36.80 3.27
3877 4518 3.550950 GCTCCAAGAAAGCTCTGAAAC 57.449 47.619 0.00 0.00 36.80 2.78
3885 4526 3.308323 CGACATCTTAGCTCCAAGAAAGC 59.692 47.826 3.10 0.00 38.03 3.51
3886 4527 3.868077 CCGACATCTTAGCTCCAAGAAAG 59.132 47.826 3.10 2.63 38.03 2.62
3887 4528 3.260884 ACCGACATCTTAGCTCCAAGAAA 59.739 43.478 3.10 0.00 38.03 2.52
3888 4529 2.832129 ACCGACATCTTAGCTCCAAGAA 59.168 45.455 3.10 0.00 38.03 2.52
3889 4530 2.457598 ACCGACATCTTAGCTCCAAGA 58.542 47.619 1.46 1.46 38.84 3.02
3890 4531 2.969628 ACCGACATCTTAGCTCCAAG 57.030 50.000 0.00 0.00 0.00 3.61
3891 4532 3.958147 TCATACCGACATCTTAGCTCCAA 59.042 43.478 0.00 0.00 0.00 3.53
3892 4533 3.562182 TCATACCGACATCTTAGCTCCA 58.438 45.455 0.00 0.00 0.00 3.86
3893 4534 4.551388 CTTCATACCGACATCTTAGCTCC 58.449 47.826 0.00 0.00 0.00 4.70
3894 4535 3.984633 GCTTCATACCGACATCTTAGCTC 59.015 47.826 0.00 0.00 0.00 4.09
3895 4536 3.384789 TGCTTCATACCGACATCTTAGCT 59.615 43.478 0.00 0.00 0.00 3.32
3896 4537 3.717707 TGCTTCATACCGACATCTTAGC 58.282 45.455 0.00 0.00 0.00 3.09
3897 4538 6.145209 CAGAATGCTTCATACCGACATCTTAG 59.855 42.308 0.00 0.00 0.00 2.18
3898 4539 5.985530 CAGAATGCTTCATACCGACATCTTA 59.014 40.000 0.00 0.00 0.00 2.10
3899 4540 4.813161 CAGAATGCTTCATACCGACATCTT 59.187 41.667 0.00 0.00 0.00 2.40
3900 4541 4.375272 CAGAATGCTTCATACCGACATCT 58.625 43.478 0.00 0.00 0.00 2.90
3901 4542 4.722203 CAGAATGCTTCATACCGACATC 57.278 45.455 0.00 0.00 0.00 3.06
3916 4557 4.725359 TGTTCACGAATTCATGCAGAATG 58.275 39.130 6.22 0.00 46.09 2.67
3918 4559 4.827304 TTGTTCACGAATTCATGCAGAA 57.173 36.364 6.22 0.00 41.28 3.02
3919 4560 4.827304 TTTGTTCACGAATTCATGCAGA 57.173 36.364 6.22 0.00 0.00 4.26
3920 4561 4.201551 GCATTTGTTCACGAATTCATGCAG 60.202 41.667 14.71 0.00 0.00 4.41
3921 4562 3.674281 GCATTTGTTCACGAATTCATGCA 59.326 39.130 14.71 0.00 0.00 3.96
3922 4563 3.674281 TGCATTTGTTCACGAATTCATGC 59.326 39.130 13.37 13.37 0.00 4.06
3923 4564 4.919168 AGTGCATTTGTTCACGAATTCATG 59.081 37.500 6.22 0.00 38.19 3.07
3924 4565 4.919168 CAGTGCATTTGTTCACGAATTCAT 59.081 37.500 6.22 0.00 38.19 2.57
3925 4566 4.202000 ACAGTGCATTTGTTCACGAATTCA 60.202 37.500 6.22 0.00 38.19 2.57
3926 4567 4.146961 CACAGTGCATTTGTTCACGAATTC 59.853 41.667 4.27 0.00 38.19 2.17
3927 4568 4.043750 CACAGTGCATTTGTTCACGAATT 58.956 39.130 4.27 0.00 38.19 2.17
3928 4569 3.314913 TCACAGTGCATTTGTTCACGAAT 59.685 39.130 4.27 0.00 38.19 3.34
3929 4570 2.680339 TCACAGTGCATTTGTTCACGAA 59.320 40.909 4.27 0.00 38.19 3.85
3930 4571 2.284190 TCACAGTGCATTTGTTCACGA 58.716 42.857 4.27 0.00 38.19 4.35
3931 4572 2.753989 TCACAGTGCATTTGTTCACG 57.246 45.000 4.27 0.00 38.19 4.35
3932 4573 5.976534 TGTAATTCACAGTGCATTTGTTCAC 59.023 36.000 3.62 0.00 31.89 3.18
3933 4574 6.141560 TGTAATTCACAGTGCATTTGTTCA 57.858 33.333 3.62 0.00 31.89 3.18
3946 4587 7.656412 TGGTTACTTACGTACTGTAATTCACA 58.344 34.615 17.72 13.36 42.02 3.58
3947 4588 8.693542 ATGGTTACTTACGTACTGTAATTCAC 57.306 34.615 17.72 9.61 42.02 3.18
3948 4589 9.787532 GTATGGTTACTTACGTACTGTAATTCA 57.212 33.333 17.72 17.71 42.02 2.57
3949 4590 8.947940 CGTATGGTTACTTACGTACTGTAATTC 58.052 37.037 17.72 14.51 42.02 2.17
3950 4591 8.673711 TCGTATGGTTACTTACGTACTGTAATT 58.326 33.333 17.72 11.41 45.51 1.40
3951 4592 8.208718 TCGTATGGTTACTTACGTACTGTAAT 57.791 34.615 17.72 9.14 45.51 1.89
3952 4593 7.603963 TCGTATGGTTACTTACGTACTGTAA 57.396 36.000 13.26 13.26 45.51 2.41
3953 4594 7.547722 TCTTCGTATGGTTACTTACGTACTGTA 59.452 37.037 14.28 0.00 45.51 2.74
3954 4595 6.371548 TCTTCGTATGGTTACTTACGTACTGT 59.628 38.462 14.28 0.00 45.51 3.55
3955 4596 6.775088 TCTTCGTATGGTTACTTACGTACTG 58.225 40.000 14.28 0.00 45.51 2.74
3956 4597 6.985188 TCTTCGTATGGTTACTTACGTACT 57.015 37.500 14.28 0.00 45.51 2.73
3957 4598 6.634436 CCATCTTCGTATGGTTACTTACGTAC 59.366 42.308 14.28 0.00 45.51 3.67
3958 4599 6.542005 TCCATCTTCGTATGGTTACTTACGTA 59.458 38.462 14.28 0.00 45.67 3.57
3959 4600 5.357878 TCCATCTTCGTATGGTTACTTACGT 59.642 40.000 14.28 0.00 45.67 3.57
3960 4601 5.684626 GTCCATCTTCGTATGGTTACTTACG 59.315 44.000 11.94 10.48 45.67 3.18
3969 4610 1.869754 CGCCTGTCCATCTTCGTATGG 60.870 57.143 7.58 7.58 46.69 2.74
3995 4636 7.851508 ACAAAACATCTATACGAATCCGATTG 58.148 34.615 0.00 0.00 39.50 2.67
4115 4769 5.557866 GGGCTCTGGAGTAGTAAAGAAAAA 58.442 41.667 0.00 0.00 0.00 1.94
4120 4863 1.409427 CCGGGCTCTGGAGTAGTAAAG 59.591 57.143 0.00 0.00 0.00 1.85
4135 4878 1.666872 CGATCCGAAATACCCGGGC 60.667 63.158 24.08 1.80 46.47 6.13
4194 4937 4.056125 TGAGTGCGAGCCCAGTCG 62.056 66.667 0.00 0.00 43.08 4.18
4197 4940 2.740055 GTGTGAGTGCGAGCCCAG 60.740 66.667 0.00 0.00 0.00 4.45
4241 4989 3.807071 GGTTGGCATTTTTCATCGTGTTT 59.193 39.130 0.00 0.00 0.00 2.83
4258 5006 0.179156 GCGATGTTGATGCTGGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
4259 5007 0.179156 GGCGATGTTGATGCTGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
4260 5008 1.315257 GGGCGATGTTGATGCTGGTT 61.315 55.000 0.00 0.00 0.00 3.67
4261 5009 1.750399 GGGCGATGTTGATGCTGGT 60.750 57.895 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.