Multiple sequence alignment - TraesCS2D01G451300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G451300 chr2D 100.000 9000 0 0 1 9000 561025302 561034301 0.000000e+00 16620.0
1 TraesCS2D01G451300 chr2D 92.381 2638 182 12 1790 4417 560964713 560962085 0.000000e+00 3740.0
2 TraesCS2D01G451300 chr2D 89.914 2082 163 28 4454 6516 560962095 560960042 0.000000e+00 2638.0
3 TraesCS2D01G451300 chr2D 88.464 1777 161 27 6529 8295 560959483 560957741 0.000000e+00 2106.0
4 TraesCS2D01G451300 chr2D 78.354 328 49 15 8362 8677 560957716 560957399 9.220000e-45 193.0
5 TraesCS2D01G451300 chr2B 96.639 4880 144 11 1647 6516 669663850 669668719 0.000000e+00 8085.0
6 TraesCS2D01G451300 chr2B 93.331 2549 160 5 1872 4412 669443064 669440518 0.000000e+00 3757.0
7 TraesCS2D01G451300 chr2B 95.093 2323 78 22 6453 8758 669668967 669671270 0.000000e+00 3626.0
8 TraesCS2D01G451300 chr2B 88.889 1746 146 23 4458 6194 669440508 669438802 0.000000e+00 2106.0
9 TraesCS2D01G451300 chr2B 87.598 1790 166 36 6519 8295 669437743 669435997 0.000000e+00 2025.0
10 TraesCS2D01G451300 chr2B 95.195 333 15 1 6193 6524 669438708 669438376 8.000000e-145 525.0
11 TraesCS2D01G451300 chr2B 81.195 686 47 26 778 1430 669663226 669663862 2.270000e-130 477.0
12 TraesCS2D01G451300 chr2B 88.858 359 5 5 1 324 669662584 669662942 8.410000e-110 409.0
13 TraesCS2D01G451300 chr2B 89.753 283 18 4 445 721 669662943 669663220 1.440000e-92 351.0
14 TraesCS2D01G451300 chr2B 87.892 223 19 5 8780 9000 669672134 669672350 1.160000e-63 255.0
15 TraesCS2D01G451300 chr2B 95.139 144 6 1 308 451 579685594 579685452 9.090000e-55 226.0
16 TraesCS2D01G451300 chr2B 81.818 110 16 4 620 728 669443723 669443617 1.240000e-13 89.8
17 TraesCS2D01G451300 chr2A 95.276 4043 133 16 4702 8736 700986270 700990262 0.000000e+00 6355.0
18 TraesCS2D01G451300 chr2A 97.412 3014 66 8 1696 4703 700983010 700986017 0.000000e+00 5123.0
19 TraesCS2D01G451300 chr2A 93.454 2551 156 7 1872 4417 700961564 700959020 0.000000e+00 3775.0
20 TraesCS2D01G451300 chr2A 90.256 2073 162 25 4453 6516 700959019 700956978 0.000000e+00 2673.0
21 TraesCS2D01G451300 chr2A 89.026 1704 162 19 6529 8223 700956576 700954889 0.000000e+00 2087.0
22 TraesCS2D01G451300 chr2A 88.345 592 43 12 446 1020 700980243 700980825 0.000000e+00 688.0
23 TraesCS2D01G451300 chr2A 83.986 281 10 11 77 322 700979964 700980244 4.200000e-58 237.0
24 TraesCS2D01G451300 chr2A 85.782 211 17 10 1442 1648 706509822 706509621 2.550000e-50 211.0
25 TraesCS2D01G451300 chr2A 85.714 112 11 4 8752 8862 700990246 700990353 7.390000e-21 113.0
26 TraesCS2D01G451300 chr2A 95.556 45 1 1 12 55 700979870 700979914 4.510000e-08 71.3
27 TraesCS2D01G451300 chrUn 100.000 412 0 0 3559 3970 477536858 477536447 0.000000e+00 761.0
28 TraesCS2D01G451300 chr7B 91.667 492 38 3 2222 2710 553234179 553234670 0.000000e+00 678.0
29 TraesCS2D01G451300 chr7B 98.519 135 1 1 317 451 372834979 372835112 4.200000e-58 237.0
30 TraesCS2D01G451300 chr7B 83.333 210 17 13 1440 1647 103902619 103902812 2.580000e-40 178.0
31 TraesCS2D01G451300 chr4D 90.871 241 16 3 518 752 301292890 301292650 1.460000e-82 318.0
32 TraesCS2D01G451300 chr4D 99.242 132 1 0 320 451 15801150 15801019 1.170000e-58 239.0
33 TraesCS2D01G451300 chr4B 88.626 211 13 9 1440 1648 483504720 483504921 6.980000e-61 246.0
34 TraesCS2D01G451300 chr4B 85.714 70 4 3 518 581 508513830 508513899 1.620000e-07 69.4
35 TraesCS2D01G451300 chr5B 98.519 135 2 0 318 452 640272738 640272872 1.170000e-58 239.0
36 TraesCS2D01G451300 chr3D 99.237 131 1 0 318 448 283321122 283321252 4.200000e-58 237.0
37 TraesCS2D01G451300 chr3B 99.237 131 1 0 320 450 741865849 741865979 4.200000e-58 237.0
38 TraesCS2D01G451300 chr3B 96.364 110 4 0 647 756 169824433 169824542 2.000000e-41 182.0
39 TraesCS2D01G451300 chr3B 82.870 216 18 17 1440 1648 240535250 240535047 9.290000e-40 176.0
40 TraesCS2D01G451300 chr3B 97.222 36 1 0 690 725 46901858 46901823 2.710000e-05 62.1
41 TraesCS2D01G451300 chr1D 98.507 134 2 0 318 451 347476439 347476306 4.200000e-58 237.0
42 TraesCS2D01G451300 chr7D 98.496 133 2 0 320 452 266214381 266214249 1.510000e-57 235.0
43 TraesCS2D01G451300 chr7A 98.496 133 2 0 318 450 15084391 15084523 1.510000e-57 235.0
44 TraesCS2D01G451300 chr7A 86.603 209 16 8 1440 1648 290923935 290923739 4.230000e-53 220.0
45 TraesCS2D01G451300 chr6B 91.139 158 14 0 790 947 255099729 255099572 1.970000e-51 215.0
46 TraesCS2D01G451300 chr6B 87.143 70 3 3 518 581 716944471 716944540 3.490000e-09 75.0
47 TraesCS2D01G451300 chr6B 95.122 41 2 0 1231 1271 255099521 255099481 2.100000e-06 65.8
48 TraesCS2D01G451300 chr1A 85.577 208 17 8 1440 1647 224803684 224803490 1.180000e-48 206.0
49 TraesCS2D01G451300 chr1A 82.870 216 18 14 1438 1648 257572878 257572677 9.290000e-40 176.0
50 TraesCS2D01G451300 chr5A 84.834 211 15 11 1440 1648 432002761 432002956 7.130000e-46 196.0
51 TraesCS2D01G451300 chr5A 86.096 187 14 12 1467 1648 642536041 642536220 3.320000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G451300 chr2D 561025302 561034301 8999 False 16620.000000 16620 100.000000 1 9000 1 chr2D.!!$F1 8999
1 TraesCS2D01G451300 chr2D 560957399 560964713 7314 True 2169.250000 3740 87.278250 1790 8677 4 chr2D.!!$R1 6887
2 TraesCS2D01G451300 chr2B 669662584 669672350 9766 False 2200.500000 8085 89.905000 1 9000 6 chr2B.!!$F1 8999
3 TraesCS2D01G451300 chr2B 669435997 669443723 7726 True 1700.560000 3757 89.366200 620 8295 5 chr2B.!!$R2 7675
4 TraesCS2D01G451300 chr2A 700954889 700961564 6675 True 2845.000000 3775 90.912000 1872 8223 3 chr2A.!!$R2 6351
5 TraesCS2D01G451300 chr2A 700979870 700990353 10483 False 2097.883333 6355 91.048167 12 8862 6 chr2A.!!$F1 8850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 347 0.112412 AACCTTACCTGCCCAAGTGG 59.888 55.000 0.0 0.0 37.09 4.00 F
739 835 0.325860 TGTAGCCCAGGACCCGTAAT 60.326 55.000 0.0 0.0 0.00 1.89 F
1452 3572 0.040514 TTGCTATGTGTTGTGCGTGC 60.041 50.000 0.0 0.0 0.00 5.34 F
1456 3576 0.040514 TATGTGTTGTGCGTGCTTGC 60.041 50.000 0.0 0.0 0.00 4.01 F
1573 3693 0.109039 GGCGGTGTGTGTGTGTTTTT 60.109 50.000 0.0 0.0 0.00 1.94 F
1607 3727 0.179032 TTGACATTGTGCTCGGTGGT 60.179 50.000 0.0 0.0 0.00 4.16 F
1614 3734 0.179043 TGTGCTCGGTGGTTGCTTTA 60.179 50.000 0.0 0.0 0.00 1.85 F
1615 3735 1.165270 GTGCTCGGTGGTTGCTTTAT 58.835 50.000 0.0 0.0 0.00 1.40 F
1649 3769 1.198408 CGGAAGCCTTTTTCGGTAACC 59.802 52.381 0.0 0.0 0.00 2.85 F
4367 6520 1.137872 GTAGATGCTCACACTGGAGGG 59.862 57.143 0.0 0.0 35.41 4.30 F
4377 6530 0.593128 CACTGGAGGGCAACTTTTCG 59.407 55.000 0.0 0.0 0.00 3.46 F
5380 7804 0.816825 CATCCTCCGTGCTCCAATGG 60.817 60.000 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 3553 0.040514 GCACGCACAACACATAGCAA 60.041 50.000 0.00 0.00 0.00 3.91 R
1554 3674 0.109039 AAAAACACACACACACCGCC 60.109 50.000 0.00 0.00 0.00 6.13 R
3150 5303 3.820557 TGTGGGATATTAAAGCAGCTCC 58.179 45.455 0.00 0.00 0.00 4.70 R
3422 5575 3.822735 TCTCTGATTGCAACCTTTTCTGG 59.177 43.478 0.00 0.00 0.00 3.86 R
3970 6123 4.899352 ACTCCACAGATTGCTACTTTCT 57.101 40.909 0.00 0.00 0.00 2.52 R
4010 6163 7.678171 TCCCCAAGTATGCATGATAATAGACTA 59.322 37.037 10.16 0.00 0.00 2.59 R
4203 6356 5.070770 TCGCCATTTGCAAATAGTTCAAT 57.929 34.783 23.69 0.00 41.33 2.57 R
4367 6520 6.474102 TGAATAAACAAACCTCGAAAAGTTGC 59.526 34.615 0.00 0.00 0.00 4.17 R
4377 6530 6.575162 ATGGACACTGAATAAACAAACCTC 57.425 37.500 0.00 0.00 0.00 3.85 R
5775 8219 0.111001 CTGGAAAACAACGCGTACGG 60.111 55.000 14.46 8.20 46.04 4.02 R
5781 8225 0.318699 GGCTTCCTGGAAAACAACGC 60.319 55.000 10.86 8.88 0.00 4.84 R
8085 11785 0.613260 AGTCTGTGTGGTGTGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.067615 TGTGTAATCATTGAGGAGACTAGACTC 59.932 40.741 13.06 13.06 44.43 3.36
280 347 0.112412 AACCTTACCTGCCCAAGTGG 59.888 55.000 0.00 0.00 37.09 4.00
324 403 1.469308 CGCTCCACCTCCGATATACTC 59.531 57.143 0.00 0.00 0.00 2.59
325 404 1.819903 GCTCCACCTCCGATATACTCC 59.180 57.143 0.00 0.00 0.00 3.85
326 405 2.448453 CTCCACCTCCGATATACTCCC 58.552 57.143 0.00 0.00 0.00 4.30
327 406 2.041891 CTCCACCTCCGATATACTCCCT 59.958 54.545 0.00 0.00 0.00 4.20
328 407 2.041350 TCCACCTCCGATATACTCCCTC 59.959 54.545 0.00 0.00 0.00 4.30
329 408 2.448453 CACCTCCGATATACTCCCTCC 58.552 57.143 0.00 0.00 0.00 4.30
330 409 1.004511 ACCTCCGATATACTCCCTCCG 59.995 57.143 0.00 0.00 0.00 4.63
331 410 1.004511 CCTCCGATATACTCCCTCCGT 59.995 57.143 0.00 0.00 0.00 4.69
332 411 2.358015 CTCCGATATACTCCCTCCGTC 58.642 57.143 0.00 0.00 0.00 4.79
333 412 1.004044 TCCGATATACTCCCTCCGTCC 59.996 57.143 0.00 0.00 0.00 4.79
334 413 1.461559 CGATATACTCCCTCCGTCCC 58.538 60.000 0.00 0.00 0.00 4.46
335 414 1.271762 CGATATACTCCCTCCGTCCCA 60.272 57.143 0.00 0.00 0.00 4.37
336 415 2.816712 CGATATACTCCCTCCGTCCCAA 60.817 54.545 0.00 0.00 0.00 4.12
337 416 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
338 417 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
339 418 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
340 419 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
341 420 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
342 421 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
343 422 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
344 423 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
345 424 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
346 425 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
347 426 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
348 427 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
349 428 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
350 429 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
351 430 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
352 431 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
353 432 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
354 433 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
355 434 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
356 435 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
357 436 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
358 437 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
366 445 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
367 446 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
369 448 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
370 449 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
377 456 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
378 457 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
379 458 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
380 459 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
381 460 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
382 461 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
383 462 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
384 463 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
385 464 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
386 465 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
387 466 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
388 467 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
389 468 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
390 469 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
391 470 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
401 480 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
402 481 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
403 482 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
404 483 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
421 500 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
422 501 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
423 502 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
424 503 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
425 504 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
426 505 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
434 513 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
435 514 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
436 515 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
437 516 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
438 517 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
439 518 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
440 519 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
441 520 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
442 521 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
443 522 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
450 529 3.339713 TTGGGACGGAGGGAGTATATT 57.660 47.619 0.00 0.00 0.00 1.28
473 557 2.761195 CGTCGATCGCCACCTCTCA 61.761 63.158 11.09 0.00 0.00 3.27
474 558 1.511305 GTCGATCGCCACCTCTCAA 59.489 57.895 11.09 0.00 0.00 3.02
475 559 0.802607 GTCGATCGCCACCTCTCAAC 60.803 60.000 11.09 0.00 0.00 3.18
476 560 0.965866 TCGATCGCCACCTCTCAACT 60.966 55.000 11.09 0.00 0.00 3.16
477 561 0.526524 CGATCGCCACCTCTCAACTC 60.527 60.000 0.26 0.00 0.00 3.01
486 570 2.491693 CACCTCTCAACTCTGTCTCTCC 59.508 54.545 0.00 0.00 0.00 3.71
515 599 2.046023 CCTCACTGCGCCATGGAA 60.046 61.111 18.40 0.00 0.00 3.53
530 614 2.371259 GGAAGGAGGGAGGAGCCAC 61.371 68.421 0.00 0.00 38.95 5.01
614 710 2.128035 CATGATTCGCCGAGTAAGTCC 58.872 52.381 0.00 0.00 0.00 3.85
651 747 9.280174 CAAGTCCTGTTAATAAAGGTCTGTTTA 57.720 33.333 3.54 0.00 33.09 2.01
729 825 0.966875 TGGCAGCATTTGTAGCCCAG 60.967 55.000 11.20 0.00 46.45 4.45
734 830 1.037579 GCATTTGTAGCCCAGGACCC 61.038 60.000 0.00 0.00 0.00 4.46
739 835 0.325860 TGTAGCCCAGGACCCGTAAT 60.326 55.000 0.00 0.00 0.00 1.89
741 837 1.211212 GTAGCCCAGGACCCGTAATTT 59.789 52.381 0.00 0.00 0.00 1.82
742 838 0.702316 AGCCCAGGACCCGTAATTTT 59.298 50.000 0.00 0.00 0.00 1.82
743 839 1.917568 AGCCCAGGACCCGTAATTTTA 59.082 47.619 0.00 0.00 0.00 1.52
744 840 2.092592 AGCCCAGGACCCGTAATTTTAG 60.093 50.000 0.00 0.00 0.00 1.85
761 857 9.813446 GTAATTTTAGTTAGTTAGCTAGCCTCA 57.187 33.333 12.13 0.00 0.00 3.86
768 864 4.143986 AGTTAGCTAGCCTCAATGGTTC 57.856 45.455 12.13 0.00 38.35 3.62
773 875 2.355108 GCTAGCCTCAATGGTTCTGTCA 60.355 50.000 2.29 0.00 38.35 3.58
806 912 6.821665 TGACTAACTGAATTAATAGCCACCAC 59.178 38.462 0.00 0.00 0.00 4.16
810 916 5.007682 ACTGAATTAATAGCCACCACGTTT 58.992 37.500 0.00 0.00 0.00 3.60
814 920 8.057536 TGAATTAATAGCCACCACGTTTAAAT 57.942 30.769 0.00 0.00 0.00 1.40
815 921 8.524487 TGAATTAATAGCCACCACGTTTAAATT 58.476 29.630 0.00 0.00 0.00 1.82
816 922 9.361315 GAATTAATAGCCACCACGTTTAAATTT 57.639 29.630 0.00 0.00 0.00 1.82
900 1030 3.645687 AGAAAATTTAGCAAACTGGGCCA 59.354 39.130 5.85 5.85 0.00 5.36
997 1132 7.159322 TCATTCTGACTAGAAACACTCCTAC 57.841 40.000 0.00 0.00 45.47 3.18
1020 1155 4.614284 CGCATGCAACTGTCTAAAAGAAAG 59.386 41.667 19.57 0.00 35.65 2.62
1024 1178 7.306225 GCATGCAACTGTCTAAAAGAAAGAAAC 60.306 37.037 14.21 0.00 33.18 2.78
1031 1185 5.596772 TGTCTAAAAGAAAGAAACCAAGGGG 59.403 40.000 0.00 0.00 41.29 4.79
1063 1218 8.712228 ATCTTTTCTACACTTTTTCCCTTCAT 57.288 30.769 0.00 0.00 0.00 2.57
1212 1383 6.683715 AGAGGAAAGAGTCTAAAAGAACTCG 58.316 40.000 0.00 0.00 31.89 4.18
1256 1427 4.359706 GGCTGTTACAAAGAAACACCAAG 58.640 43.478 0.00 0.00 33.45 3.61
1270 1441 6.651225 AGAAACACCAAGAAAGATGTAGCTAC 59.349 38.462 17.30 17.30 0.00 3.58
1276 1447 5.168569 CAAGAAAGATGTAGCTACGGTCAA 58.831 41.667 23.18 7.42 0.00 3.18
1339 1534 2.439507 TGAGCCTCATCCCTAATGTTCC 59.560 50.000 0.00 0.00 36.68 3.62
1393 1588 7.312899 CCCCTCAAAAACACATCAATTACTAC 58.687 38.462 0.00 0.00 0.00 2.73
1394 1589 7.176690 CCCCTCAAAAACACATCAATTACTACT 59.823 37.037 0.00 0.00 0.00 2.57
1395 1590 9.226606 CCCTCAAAAACACATCAATTACTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1430 3550 3.553508 CCGAAGTCAAACCTTAGGACGAA 60.554 47.826 4.77 0.00 38.95 3.85
1433 3553 4.684484 AGTCAAACCTTAGGACGAAACT 57.316 40.909 4.77 0.00 36.68 2.66
1434 3554 5.032327 AGTCAAACCTTAGGACGAAACTT 57.968 39.130 4.77 0.00 36.68 2.66
1435 3555 4.814771 AGTCAAACCTTAGGACGAAACTTG 59.185 41.667 4.77 0.00 36.68 3.16
1436 3556 3.562557 TCAAACCTTAGGACGAAACTTGC 59.437 43.478 4.77 0.00 0.00 4.01
1437 3557 3.487120 AACCTTAGGACGAAACTTGCT 57.513 42.857 4.77 0.00 0.00 3.91
1438 3558 4.612264 AACCTTAGGACGAAACTTGCTA 57.388 40.909 4.77 0.00 0.00 3.49
1439 3559 4.820894 ACCTTAGGACGAAACTTGCTAT 57.179 40.909 4.77 0.00 0.00 2.97
1440 3560 4.504858 ACCTTAGGACGAAACTTGCTATG 58.495 43.478 4.77 0.00 0.00 2.23
1441 3561 4.020485 ACCTTAGGACGAAACTTGCTATGT 60.020 41.667 4.77 0.00 0.00 2.29
1442 3562 4.330074 CCTTAGGACGAAACTTGCTATGTG 59.670 45.833 0.00 0.00 0.00 3.21
1443 3563 3.402628 AGGACGAAACTTGCTATGTGT 57.597 42.857 0.00 0.00 0.00 3.72
1444 3564 3.740115 AGGACGAAACTTGCTATGTGTT 58.260 40.909 0.00 0.00 0.00 3.32
1445 3565 3.498397 AGGACGAAACTTGCTATGTGTTG 59.502 43.478 0.00 0.00 0.00 3.33
1446 3566 3.250040 GGACGAAACTTGCTATGTGTTGT 59.750 43.478 0.00 0.00 0.00 3.32
1447 3567 4.209452 ACGAAACTTGCTATGTGTTGTG 57.791 40.909 0.00 0.00 0.00 3.33
1448 3568 2.973224 CGAAACTTGCTATGTGTTGTGC 59.027 45.455 0.00 0.00 0.00 4.57
1449 3569 2.686558 AACTTGCTATGTGTTGTGCG 57.313 45.000 0.00 0.00 0.00 5.34
1450 3570 1.593196 ACTTGCTATGTGTTGTGCGT 58.407 45.000 0.00 0.00 0.00 5.24
1451 3571 1.264020 ACTTGCTATGTGTTGTGCGTG 59.736 47.619 0.00 0.00 0.00 5.34
1452 3572 0.040514 TTGCTATGTGTTGTGCGTGC 60.041 50.000 0.00 0.00 0.00 5.34
1453 3573 0.884259 TGCTATGTGTTGTGCGTGCT 60.884 50.000 0.00 0.00 0.00 4.40
1454 3574 0.238289 GCTATGTGTTGTGCGTGCTT 59.762 50.000 0.00 0.00 0.00 3.91
1455 3575 1.954437 CTATGTGTTGTGCGTGCTTG 58.046 50.000 0.00 0.00 0.00 4.01
1456 3576 0.040514 TATGTGTTGTGCGTGCTTGC 60.041 50.000 0.00 0.00 0.00 4.01
1457 3577 1.727511 ATGTGTTGTGCGTGCTTGCT 61.728 50.000 2.56 0.00 35.36 3.91
1458 3578 1.940758 GTGTTGTGCGTGCTTGCTG 60.941 57.895 2.56 0.00 35.36 4.41
1459 3579 2.405805 TGTTGTGCGTGCTTGCTGT 61.406 52.632 2.56 0.00 35.36 4.40
1460 3580 1.940758 GTTGTGCGTGCTTGCTGTG 60.941 57.895 2.56 0.00 35.36 3.66
1461 3581 2.405805 TTGTGCGTGCTTGCTGTGT 61.406 52.632 2.56 0.00 35.36 3.72
1462 3582 2.051882 GTGCGTGCTTGCTGTGTC 60.052 61.111 2.56 0.00 35.36 3.67
1463 3583 2.203056 TGCGTGCTTGCTGTGTCT 60.203 55.556 2.56 0.00 35.36 3.41
1464 3584 2.250485 GCGTGCTTGCTGTGTCTG 59.750 61.111 0.00 0.00 0.00 3.51
1465 3585 2.250485 CGTGCTTGCTGTGTCTGC 59.750 61.111 0.00 0.00 0.00 4.26
1466 3586 2.250485 GTGCTTGCTGTGTCTGCG 59.750 61.111 0.00 0.00 0.00 5.18
1467 3587 2.203056 TGCTTGCTGTGTCTGCGT 60.203 55.556 0.00 0.00 0.00 5.24
1468 3588 2.250485 GCTTGCTGTGTCTGCGTG 59.750 61.111 0.00 0.00 0.00 5.34
1469 3589 2.537560 GCTTGCTGTGTCTGCGTGT 61.538 57.895 0.00 0.00 0.00 4.49
1470 3590 2.016961 CTTGCTGTGTCTGCGTGTT 58.983 52.632 0.00 0.00 0.00 3.32
1471 3591 0.316442 CTTGCTGTGTCTGCGTGTTG 60.316 55.000 0.00 0.00 0.00 3.33
1472 3592 1.713937 TTGCTGTGTCTGCGTGTTGG 61.714 55.000 0.00 0.00 0.00 3.77
1473 3593 2.896801 GCTGTGTCTGCGTGTTGGG 61.897 63.158 0.00 0.00 0.00 4.12
1474 3594 2.896801 CTGTGTCTGCGTGTTGGGC 61.897 63.158 0.00 0.00 0.00 5.36
1475 3595 2.591715 GTGTCTGCGTGTTGGGCT 60.592 61.111 0.00 0.00 0.00 5.19
1476 3596 2.186826 GTGTCTGCGTGTTGGGCTT 61.187 57.895 0.00 0.00 0.00 4.35
1477 3597 2.186160 TGTCTGCGTGTTGGGCTTG 61.186 57.895 0.00 0.00 0.00 4.01
1478 3598 2.186826 GTCTGCGTGTTGGGCTTGT 61.187 57.895 0.00 0.00 0.00 3.16
1479 3599 1.453015 TCTGCGTGTTGGGCTTGTT 60.453 52.632 0.00 0.00 0.00 2.83
1480 3600 1.299316 CTGCGTGTTGGGCTTGTTG 60.299 57.895 0.00 0.00 0.00 3.33
1481 3601 2.003658 CTGCGTGTTGGGCTTGTTGT 62.004 55.000 0.00 0.00 0.00 3.32
1482 3602 1.588667 GCGTGTTGGGCTTGTTGTG 60.589 57.895 0.00 0.00 0.00 3.33
1483 3603 1.588667 CGTGTTGGGCTTGTTGTGC 60.589 57.895 0.00 0.00 0.00 4.57
1484 3604 1.815866 GTGTTGGGCTTGTTGTGCT 59.184 52.632 0.00 0.00 0.00 4.40
1485 3605 0.528249 GTGTTGGGCTTGTTGTGCTG 60.528 55.000 0.00 0.00 0.00 4.41
1486 3606 0.969917 TGTTGGGCTTGTTGTGCTGT 60.970 50.000 0.00 0.00 0.00 4.40
1487 3607 0.528249 GTTGGGCTTGTTGTGCTGTG 60.528 55.000 0.00 0.00 0.00 3.66
1488 3608 2.028043 GGGCTTGTTGTGCTGTGC 59.972 61.111 0.00 0.00 0.00 4.57
1489 3609 2.028043 GGCTTGTTGTGCTGTGCC 59.972 61.111 0.00 0.00 0.00 5.01
1490 3610 2.028043 GCTTGTTGTGCTGTGCCC 59.972 61.111 0.00 0.00 0.00 5.36
1491 3611 2.784356 GCTTGTTGTGCTGTGCCCA 61.784 57.895 0.00 0.00 0.00 5.36
1492 3612 1.066257 CTTGTTGTGCTGTGCCCAC 59.934 57.895 0.00 0.00 0.00 4.61
1493 3613 1.665264 CTTGTTGTGCTGTGCCCACA 61.665 55.000 0.71 0.71 41.11 4.17
1501 3621 2.203337 TGTGCCCACAGCTGAACC 60.203 61.111 23.35 6.11 44.23 3.62
1502 3622 2.113986 GTGCCCACAGCTGAACCT 59.886 61.111 23.35 0.00 44.23 3.50
1503 3623 1.968540 GTGCCCACAGCTGAACCTC 60.969 63.158 23.35 5.79 44.23 3.85
1504 3624 2.743928 GCCCACAGCTGAACCTCG 60.744 66.667 23.35 2.22 38.99 4.63
1505 3625 2.743718 CCCACAGCTGAACCTCGT 59.256 61.111 23.35 0.00 0.00 4.18
1506 3626 1.071471 CCCACAGCTGAACCTCGTT 59.929 57.895 23.35 0.00 0.00 3.85
1507 3627 0.535102 CCCACAGCTGAACCTCGTTT 60.535 55.000 23.35 0.00 0.00 3.60
1508 3628 0.588252 CCACAGCTGAACCTCGTTTG 59.412 55.000 23.35 4.31 0.00 2.93
1509 3629 1.581934 CACAGCTGAACCTCGTTTGA 58.418 50.000 23.35 0.00 0.00 2.69
1510 3630 2.146342 CACAGCTGAACCTCGTTTGAT 58.854 47.619 23.35 0.00 0.00 2.57
1511 3631 2.096069 CACAGCTGAACCTCGTTTGATG 60.096 50.000 23.35 0.00 0.00 3.07
1512 3632 2.146342 CAGCTGAACCTCGTTTGATGT 58.854 47.619 8.42 0.00 0.00 3.06
1513 3633 2.549754 CAGCTGAACCTCGTTTGATGTT 59.450 45.455 8.42 0.00 35.92 2.71
1514 3634 3.003689 CAGCTGAACCTCGTTTGATGTTT 59.996 43.478 8.42 0.00 33.76 2.83
1515 3635 3.003689 AGCTGAACCTCGTTTGATGTTTG 59.996 43.478 0.00 0.00 33.76 2.93
1516 3636 3.243068 GCTGAACCTCGTTTGATGTTTGT 60.243 43.478 0.00 0.00 33.76 2.83
1517 3637 4.282068 CTGAACCTCGTTTGATGTTTGTG 58.718 43.478 0.00 0.00 33.76 3.33
1518 3638 3.692101 TGAACCTCGTTTGATGTTTGTGT 59.308 39.130 0.00 0.00 33.76 3.72
1519 3639 3.691049 ACCTCGTTTGATGTTTGTGTG 57.309 42.857 0.00 0.00 0.00 3.82
1520 3640 3.013921 ACCTCGTTTGATGTTTGTGTGT 58.986 40.909 0.00 0.00 0.00 3.72
1521 3641 3.181501 ACCTCGTTTGATGTTTGTGTGTG 60.182 43.478 0.00 0.00 0.00 3.82
1522 3642 3.181501 CCTCGTTTGATGTTTGTGTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
1523 3643 3.752731 TCGTTTGATGTTTGTGTGTGTG 58.247 40.909 0.00 0.00 0.00 3.82
1524 3644 3.189495 TCGTTTGATGTTTGTGTGTGTGT 59.811 39.130 0.00 0.00 0.00 3.72
1525 3645 4.392138 TCGTTTGATGTTTGTGTGTGTGTA 59.608 37.500 0.00 0.00 0.00 2.90
1526 3646 5.065346 TCGTTTGATGTTTGTGTGTGTGTAT 59.935 36.000 0.00 0.00 0.00 2.29
1527 3647 5.171159 CGTTTGATGTTTGTGTGTGTGTATG 59.829 40.000 0.00 0.00 0.00 2.39
1528 3648 4.827304 TGATGTTTGTGTGTGTGTATGG 57.173 40.909 0.00 0.00 0.00 2.74
1529 3649 4.203226 TGATGTTTGTGTGTGTGTATGGT 58.797 39.130 0.00 0.00 0.00 3.55
1530 3650 4.642437 TGATGTTTGTGTGTGTGTATGGTT 59.358 37.500 0.00 0.00 0.00 3.67
1531 3651 4.362932 TGTTTGTGTGTGTGTATGGTTG 57.637 40.909 0.00 0.00 0.00 3.77
1532 3652 3.759086 TGTTTGTGTGTGTGTATGGTTGT 59.241 39.130 0.00 0.00 0.00 3.32
1533 3653 4.142578 TGTTTGTGTGTGTGTATGGTTGTC 60.143 41.667 0.00 0.00 0.00 3.18
1534 3654 3.552132 TGTGTGTGTGTATGGTTGTCT 57.448 42.857 0.00 0.00 0.00 3.41
1535 3655 3.202097 TGTGTGTGTGTATGGTTGTCTG 58.798 45.455 0.00 0.00 0.00 3.51
1536 3656 3.202906 GTGTGTGTGTATGGTTGTCTGT 58.797 45.455 0.00 0.00 0.00 3.41
1537 3657 3.002246 GTGTGTGTGTATGGTTGTCTGTG 59.998 47.826 0.00 0.00 0.00 3.66
1538 3658 3.118592 TGTGTGTGTATGGTTGTCTGTGA 60.119 43.478 0.00 0.00 0.00 3.58
1539 3659 3.494626 GTGTGTGTATGGTTGTCTGTGAG 59.505 47.826 0.00 0.00 0.00 3.51
1540 3660 3.386402 TGTGTGTATGGTTGTCTGTGAGA 59.614 43.478 0.00 0.00 0.00 3.27
1541 3661 3.741344 GTGTGTATGGTTGTCTGTGAGAC 59.259 47.826 0.00 0.00 45.26 3.36
1542 3662 3.244078 TGTGTATGGTTGTCTGTGAGACC 60.244 47.826 1.36 0.00 44.44 3.85
1543 3663 3.006967 GTGTATGGTTGTCTGTGAGACCT 59.993 47.826 1.36 0.00 44.44 3.85
1544 3664 3.646162 TGTATGGTTGTCTGTGAGACCTT 59.354 43.478 1.36 0.00 44.44 3.50
1545 3665 2.620251 TGGTTGTCTGTGAGACCTTG 57.380 50.000 1.36 0.00 44.44 3.61
1546 3666 1.230324 GGTTGTCTGTGAGACCTTGC 58.770 55.000 1.36 0.00 44.44 4.01
1547 3667 1.230324 GTTGTCTGTGAGACCTTGCC 58.770 55.000 1.36 0.00 44.44 4.52
1548 3668 1.131638 TTGTCTGTGAGACCTTGCCT 58.868 50.000 1.36 0.00 44.44 4.75
1549 3669 0.394192 TGTCTGTGAGACCTTGCCTG 59.606 55.000 1.36 0.00 44.44 4.85
1550 3670 0.952984 GTCTGTGAGACCTTGCCTGC 60.953 60.000 0.00 0.00 39.28 4.85
1551 3671 2.031012 TGTGAGACCTTGCCTGCG 59.969 61.111 0.00 0.00 0.00 5.18
1552 3672 2.743928 GTGAGACCTTGCCTGCGG 60.744 66.667 0.00 0.00 0.00 5.69
1553 3673 3.241530 TGAGACCTTGCCTGCGGT 61.242 61.111 0.00 0.00 35.90 5.68
1554 3674 2.743928 GAGACCTTGCCTGCGGTG 60.744 66.667 0.00 0.00 32.62 4.94
1555 3675 4.335647 AGACCTTGCCTGCGGTGG 62.336 66.667 0.00 0.00 32.62 4.61
1568 3688 3.582120 GGTGGCGGTGTGTGTGTG 61.582 66.667 0.00 0.00 0.00 3.82
1569 3689 2.822255 GTGGCGGTGTGTGTGTGT 60.822 61.111 0.00 0.00 0.00 3.72
1570 3690 2.045829 TGGCGGTGTGTGTGTGTT 60.046 55.556 0.00 0.00 0.00 3.32
1571 3691 1.675972 TGGCGGTGTGTGTGTGTTT 60.676 52.632 0.00 0.00 0.00 2.83
1572 3692 1.244697 TGGCGGTGTGTGTGTGTTTT 61.245 50.000 0.00 0.00 0.00 2.43
1573 3693 0.109039 GGCGGTGTGTGTGTGTTTTT 60.109 50.000 0.00 0.00 0.00 1.94
1574 3694 1.264672 GCGGTGTGTGTGTGTTTTTC 58.735 50.000 0.00 0.00 0.00 2.29
1575 3695 1.135517 GCGGTGTGTGTGTGTTTTTCT 60.136 47.619 0.00 0.00 0.00 2.52
1576 3696 2.514902 CGGTGTGTGTGTGTTTTTCTG 58.485 47.619 0.00 0.00 0.00 3.02
1577 3697 2.095466 CGGTGTGTGTGTGTTTTTCTGT 60.095 45.455 0.00 0.00 0.00 3.41
1578 3698 3.610585 CGGTGTGTGTGTGTTTTTCTGTT 60.611 43.478 0.00 0.00 0.00 3.16
1579 3699 3.672867 GGTGTGTGTGTGTTTTTCTGTTG 59.327 43.478 0.00 0.00 0.00 3.33
1580 3700 3.672867 GTGTGTGTGTGTTTTTCTGTTGG 59.327 43.478 0.00 0.00 0.00 3.77
1581 3701 3.319405 TGTGTGTGTGTTTTTCTGTTGGT 59.681 39.130 0.00 0.00 0.00 3.67
1582 3702 4.519350 TGTGTGTGTGTTTTTCTGTTGGTA 59.481 37.500 0.00 0.00 0.00 3.25
1583 3703 4.854839 GTGTGTGTGTTTTTCTGTTGGTAC 59.145 41.667 0.00 0.00 0.00 3.34
1584 3704 4.762765 TGTGTGTGTTTTTCTGTTGGTACT 59.237 37.500 0.00 0.00 0.00 2.73
1585 3705 5.106475 TGTGTGTGTTTTTCTGTTGGTACTC 60.106 40.000 0.00 0.00 0.00 2.59
1586 3706 5.123344 GTGTGTGTTTTTCTGTTGGTACTCT 59.877 40.000 0.00 0.00 0.00 3.24
1587 3707 5.123186 TGTGTGTTTTTCTGTTGGTACTCTG 59.877 40.000 0.00 0.00 0.00 3.35
1588 3708 5.123344 GTGTGTTTTTCTGTTGGTACTCTGT 59.877 40.000 0.00 0.00 0.00 3.41
1589 3709 5.708230 TGTGTTTTTCTGTTGGTACTCTGTT 59.292 36.000 0.00 0.00 0.00 3.16
1590 3710 6.027749 GTGTTTTTCTGTTGGTACTCTGTTG 58.972 40.000 0.00 0.00 0.00 3.33
1591 3711 5.941058 TGTTTTTCTGTTGGTACTCTGTTGA 59.059 36.000 0.00 0.00 0.00 3.18
1592 3712 6.128117 TGTTTTTCTGTTGGTACTCTGTTGAC 60.128 38.462 0.00 0.00 0.00 3.18
1593 3713 4.746535 TTCTGTTGGTACTCTGTTGACA 57.253 40.909 0.00 0.00 0.00 3.58
1594 3714 4.955811 TCTGTTGGTACTCTGTTGACAT 57.044 40.909 0.00 0.00 0.00 3.06
1595 3715 5.290493 TCTGTTGGTACTCTGTTGACATT 57.710 39.130 0.00 0.00 0.00 2.71
1596 3716 5.056480 TCTGTTGGTACTCTGTTGACATTG 58.944 41.667 0.00 0.00 0.00 2.82
1597 3717 4.776349 TGTTGGTACTCTGTTGACATTGT 58.224 39.130 0.00 0.00 0.00 2.71
1598 3718 4.574421 TGTTGGTACTCTGTTGACATTGTG 59.426 41.667 0.00 0.00 0.00 3.33
1599 3719 3.138304 TGGTACTCTGTTGACATTGTGC 58.862 45.455 0.00 0.00 0.00 4.57
1600 3720 3.181455 TGGTACTCTGTTGACATTGTGCT 60.181 43.478 0.00 0.00 0.00 4.40
1601 3721 3.433615 GGTACTCTGTTGACATTGTGCTC 59.566 47.826 0.00 0.00 0.00 4.26
1602 3722 2.138320 ACTCTGTTGACATTGTGCTCG 58.862 47.619 0.00 0.00 0.00 5.03
1603 3723 1.462283 CTCTGTTGACATTGTGCTCGG 59.538 52.381 0.00 0.00 0.00 4.63
1604 3724 1.202639 TCTGTTGACATTGTGCTCGGT 60.203 47.619 0.00 0.00 0.00 4.69
1605 3725 0.943673 TGTTGACATTGTGCTCGGTG 59.056 50.000 0.00 0.00 0.00 4.94
1606 3726 0.238289 GTTGACATTGTGCTCGGTGG 59.762 55.000 0.00 0.00 0.00 4.61
1607 3727 0.179032 TTGACATTGTGCTCGGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
1608 3728 0.179032 TGACATTGTGCTCGGTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
1609 3729 0.238289 GACATTGTGCTCGGTGGTTG 59.762 55.000 0.00 0.00 0.00 3.77
1610 3730 1.081242 CATTGTGCTCGGTGGTTGC 60.081 57.895 0.00 0.00 0.00 4.17
1611 3731 1.228245 ATTGTGCTCGGTGGTTGCT 60.228 52.632 0.00 0.00 0.00 3.91
1612 3732 0.823356 ATTGTGCTCGGTGGTTGCTT 60.823 50.000 0.00 0.00 0.00 3.91
1613 3733 1.034838 TTGTGCTCGGTGGTTGCTTT 61.035 50.000 0.00 0.00 0.00 3.51
1614 3734 0.179043 TGTGCTCGGTGGTTGCTTTA 60.179 50.000 0.00 0.00 0.00 1.85
1615 3735 1.165270 GTGCTCGGTGGTTGCTTTAT 58.835 50.000 0.00 0.00 0.00 1.40
1616 3736 1.539827 GTGCTCGGTGGTTGCTTTATT 59.460 47.619 0.00 0.00 0.00 1.40
1617 3737 2.030274 GTGCTCGGTGGTTGCTTTATTT 60.030 45.455 0.00 0.00 0.00 1.40
1618 3738 3.189702 GTGCTCGGTGGTTGCTTTATTTA 59.810 43.478 0.00 0.00 0.00 1.40
1619 3739 4.013728 TGCTCGGTGGTTGCTTTATTTAT 58.986 39.130 0.00 0.00 0.00 1.40
1620 3740 5.065474 GTGCTCGGTGGTTGCTTTATTTATA 59.935 40.000 0.00 0.00 0.00 0.98
1621 3741 5.648526 TGCTCGGTGGTTGCTTTATTTATAA 59.351 36.000 0.00 0.00 0.00 0.98
1622 3742 6.151312 TGCTCGGTGGTTGCTTTATTTATAAA 59.849 34.615 0.00 0.00 0.00 1.40
1631 3751 4.155310 CTTTATTTATAAAGCGGGGCGG 57.845 45.455 8.78 0.00 41.69 6.13
1632 3752 3.488778 TTATTTATAAAGCGGGGCGGA 57.511 42.857 3.94 0.00 0.00 5.54
1633 3753 2.351706 ATTTATAAAGCGGGGCGGAA 57.648 45.000 3.94 0.00 0.00 4.30
1634 3754 1.670791 TTTATAAAGCGGGGCGGAAG 58.329 50.000 0.00 0.00 0.00 3.46
1648 3768 2.606717 CGGAAGCCTTTTTCGGTAAC 57.393 50.000 0.00 0.00 0.00 2.50
1649 3769 1.198408 CGGAAGCCTTTTTCGGTAACC 59.802 52.381 0.00 0.00 0.00 2.85
1650 3770 2.511659 GGAAGCCTTTTTCGGTAACCT 58.488 47.619 0.00 0.00 0.00 3.50
1651 3771 2.889045 GGAAGCCTTTTTCGGTAACCTT 59.111 45.455 0.00 0.00 0.00 3.50
1652 3772 4.074259 GGAAGCCTTTTTCGGTAACCTTA 58.926 43.478 0.00 0.00 0.00 2.69
1653 3773 4.155462 GGAAGCCTTTTTCGGTAACCTTAG 59.845 45.833 0.00 0.00 0.00 2.18
1654 3774 3.682696 AGCCTTTTTCGGTAACCTTAGG 58.317 45.455 0.00 0.00 0.00 2.69
1655 3775 3.328637 AGCCTTTTTCGGTAACCTTAGGA 59.671 43.478 4.77 0.00 0.00 2.94
1656 3776 3.438087 GCCTTTTTCGGTAACCTTAGGAC 59.562 47.826 4.77 0.00 0.00 3.85
1657 3777 3.681417 CCTTTTTCGGTAACCTTAGGACG 59.319 47.826 4.77 4.22 0.00 4.79
1658 3778 4.559153 CTTTTTCGGTAACCTTAGGACGA 58.441 43.478 4.77 6.65 0.00 4.20
1659 3779 4.806640 TTTTCGGTAACCTTAGGACGAT 57.193 40.909 4.77 0.00 0.00 3.73
1660 3780 5.913137 TTTTCGGTAACCTTAGGACGATA 57.087 39.130 4.77 2.28 0.00 2.92
1661 3781 6.469782 TTTTCGGTAACCTTAGGACGATAT 57.530 37.500 4.77 0.00 0.00 1.63
1691 3811 5.765182 ACATTCTGTCAGACAAAACTTAGGG 59.235 40.000 4.41 0.00 0.00 3.53
1693 3813 4.957296 TCTGTCAGACAAAACTTAGGGAC 58.043 43.478 4.41 0.00 0.00 4.46
1694 3814 3.724374 TGTCAGACAAAACTTAGGGACG 58.276 45.455 0.00 0.00 0.00 4.79
1697 3817 4.812626 GTCAGACAAAACTTAGGGACGAAA 59.187 41.667 0.00 0.00 0.00 3.46
1698 3818 4.812626 TCAGACAAAACTTAGGGACGAAAC 59.187 41.667 0.00 0.00 0.00 2.78
1700 3820 5.296035 CAGACAAAACTTAGGGACGAAACTT 59.704 40.000 0.00 0.00 0.00 2.66
1701 3821 6.480981 CAGACAAAACTTAGGGACGAAACTTA 59.519 38.462 0.00 0.00 0.00 2.24
1741 3861 2.041755 TCTTAGGTGGAGAGACAGAGCA 59.958 50.000 0.00 0.00 0.00 4.26
1787 3907 1.547901 GCTTTTAGCCTCTGGGGTTGT 60.548 52.381 0.00 0.00 43.77 3.32
1855 3975 5.582665 CCAATTTTTCCAAAAGTCGACCAAA 59.417 36.000 13.01 0.00 0.00 3.28
1939 4085 4.876125 AGCATTGATGACGTAGATGTAGG 58.124 43.478 0.00 0.00 0.00 3.18
1944 4097 6.373186 TTGATGACGTAGATGTAGGTACTG 57.627 41.667 0.00 0.00 41.52 2.74
2086 4239 1.865865 TGTTTCTGGACGAGCACTTC 58.134 50.000 0.00 0.00 0.00 3.01
2147 4300 4.555511 GCTCAGTTTCTGTTCAAGCGAATT 60.556 41.667 0.00 0.00 32.61 2.17
2195 4348 4.584325 ACTGCAACTCCTGAAAGCAATAAA 59.416 37.500 0.00 0.00 34.45 1.40
2416 4569 5.064834 TGTCACTAGCAGTATTCAGTCTACG 59.935 44.000 0.00 0.00 0.00 3.51
2493 4646 7.166691 AGCTTTCTGCAATCAATAATCAGTT 57.833 32.000 0.00 0.00 45.94 3.16
3150 5303 2.592861 GGCTTGGGATGCGGCTAG 60.593 66.667 0.00 0.00 0.00 3.42
3200 5353 2.070650 GGGGCTCCGGTTATCCTGT 61.071 63.158 0.00 0.00 0.00 4.00
3422 5575 5.423015 TGCAATATTCCTCTGACAAGACTC 58.577 41.667 0.00 0.00 0.00 3.36
4010 6163 3.185455 AGTAGTTGGCTCTGGGAAATCT 58.815 45.455 0.00 0.00 0.00 2.40
4203 6356 5.710513 AGCTTGTGCATTGACAAAAGATA 57.289 34.783 12.40 0.00 37.09 1.98
4367 6520 1.137872 GTAGATGCTCACACTGGAGGG 59.862 57.143 0.00 0.00 35.41 4.30
4377 6530 0.593128 CACTGGAGGGCAACTTTTCG 59.407 55.000 0.00 0.00 0.00 3.46
4417 6570 6.951198 AGTGTCCATAAACCCATAAAATGTGA 59.049 34.615 0.00 0.00 0.00 3.58
4829 7253 7.391554 CCTTCAACAGAACATAGGATTTGAAGA 59.608 37.037 18.26 0.00 45.87 2.87
4830 7254 8.868522 TTCAACAGAACATAGGATTTGAAGAT 57.131 30.769 0.00 0.00 30.21 2.40
4840 7264 9.090103 ACATAGGATTTGAAGATATAGTCGGAA 57.910 33.333 0.00 0.00 0.00 4.30
4857 7281 1.000359 AACCCATAGCCAGGCAACC 60.000 57.895 15.80 0.00 37.17 3.77
4866 7290 1.972198 CCAGGCAACCGAGTCTGTA 59.028 57.895 0.00 0.00 37.17 2.74
4969 7393 7.729116 AGAAAACCACACTGATGATCAAATTT 58.271 30.769 0.00 0.00 0.00 1.82
4998 7422 2.556144 TGAAGCAAGAGTCTGCACAT 57.444 45.000 14.37 3.50 45.18 3.21
5034 7458 7.163001 AGTTATCAATGAAAAAGGAAGGCTC 57.837 36.000 0.00 0.00 0.00 4.70
5050 7474 2.575279 AGGCTCACACAAGATGAGGAAT 59.425 45.455 4.31 0.00 43.26 3.01
5239 7663 3.662759 CAAGGGTTGGATTAGGCCTTA 57.337 47.619 12.58 0.11 0.00 2.69
5380 7804 0.816825 CATCCTCCGTGCTCCAATGG 60.817 60.000 0.00 0.00 0.00 3.16
5772 8216 8.623903 CCAAGTACAATGTATGCATCAAGTTAT 58.376 33.333 0.19 0.00 33.50 1.89
5776 8220 9.450807 GTACAATGTATGCATCAAGTTATTTCC 57.549 33.333 0.19 0.00 33.50 3.13
5777 8221 7.195646 ACAATGTATGCATCAAGTTATTTCCG 58.804 34.615 0.19 0.00 33.50 4.30
5778 8222 6.942532 ATGTATGCATCAAGTTATTTCCGT 57.057 33.333 0.19 0.00 0.00 4.69
5779 8223 8.341903 CAATGTATGCATCAAGTTATTTCCGTA 58.658 33.333 0.19 0.00 33.50 4.02
5780 8224 7.241663 TGTATGCATCAAGTTATTTCCGTAC 57.758 36.000 0.19 0.00 0.00 3.67
5781 8225 4.850859 TGCATCAAGTTATTTCCGTACG 57.149 40.909 8.69 8.69 0.00 3.67
5782 8226 3.062909 TGCATCAAGTTATTTCCGTACGC 59.937 43.478 10.49 0.00 0.00 4.42
5783 8227 3.839954 GCATCAAGTTATTTCCGTACGCG 60.840 47.826 10.49 3.53 37.95 6.01
5784 8228 2.945278 TCAAGTTATTTCCGTACGCGT 58.055 42.857 19.17 19.17 36.15 6.01
5785 8229 3.316283 TCAAGTTATTTCCGTACGCGTT 58.684 40.909 20.78 0.00 36.15 4.84
5786 8230 3.121611 TCAAGTTATTTCCGTACGCGTTG 59.878 43.478 20.78 11.05 36.15 4.10
5787 8231 2.676076 AGTTATTTCCGTACGCGTTGT 58.324 42.857 20.78 0.00 36.15 3.32
5907 8370 3.194308 GCAAGAGAGCTGGCTCGC 61.194 66.667 16.38 16.38 46.90 5.03
6021 8484 2.427232 TCAGCAAAGCAAACATCAGC 57.573 45.000 0.00 0.00 0.00 4.26
6051 8514 2.943036 ACCACTTACGACCATGGTTT 57.057 45.000 20.85 12.00 42.98 3.27
6057 8520 5.588648 CCACTTACGACCATGGTTTCATAAT 59.411 40.000 20.85 0.00 31.33 1.28
6431 8990 6.014669 GGCTCCTCTAATAGTTGATGATCACT 60.015 42.308 0.00 0.00 0.00 3.41
6516 9386 5.576774 TGATGTTACTGCGAGTTATCACTTG 59.423 40.000 0.00 0.00 37.47 3.16
6749 10442 0.954452 CTGGCAGTGGAAAGTCAACC 59.046 55.000 6.28 0.00 0.00 3.77
7019 10713 1.870055 ATGTGCAGCAAAAGGGAGCG 61.870 55.000 0.00 0.00 35.48 5.03
7199 10893 3.830755 TGACAGAGTACCCTAGGAAACAC 59.169 47.826 11.48 6.57 0.00 3.32
7228 10922 7.901029 TGGATGGTCATTTTTACTATTGCAAA 58.099 30.769 1.71 0.00 0.00 3.68
7279 10974 4.158949 CAGATTGCAACCTGATCAAATCCA 59.841 41.667 16.42 0.00 32.37 3.41
7464 11160 2.306847 GAAACCCAAAGAAGCTGGACA 58.693 47.619 0.00 0.00 35.85 4.02
7515 11211 5.239306 GCACACATATGCTAGATTGGCTAAA 59.761 40.000 1.58 0.00 42.62 1.85
7524 11220 4.201861 GCTAGATTGGCTAAAAGAGTGTGC 60.202 45.833 0.00 0.00 0.00 4.57
7532 11228 5.104776 TGGCTAAAAGAGTGTGCATATCTCT 60.105 40.000 10.88 10.88 39.79 3.10
7819 11517 0.965363 AAGGTAAGCCGCACCATTGG 60.965 55.000 0.00 0.00 38.62 3.16
8024 11724 1.001815 ACCAGAAACAATTGAACGGCG 60.002 47.619 13.59 4.80 0.00 6.46
8084 11784 5.179555 CAGAACTTTAGTAGAAAGGCCACAC 59.820 44.000 5.01 0.00 0.00 3.82
8085 11785 4.699925 ACTTTAGTAGAAAGGCCACACA 57.300 40.909 5.01 0.00 0.00 3.72
8100 11807 0.250510 ACACACACACACACCACACA 60.251 50.000 0.00 0.00 0.00 3.72
8174 11884 4.955450 TGGAATTTACAATGGATGGGACTG 59.045 41.667 0.00 0.00 0.00 3.51
8199 11909 3.919216 AGATTATTCAGGCGATTCGGAG 58.081 45.455 8.34 0.00 0.00 4.63
8225 11941 8.876275 AAATTATTAAGCCATGCAATGTACTG 57.124 30.769 0.00 0.00 44.81 2.74
8262 11978 3.068873 AGCAGTCTAGCACTATGTAAGCC 59.931 47.826 0.00 0.00 36.85 4.35
8396 12112 5.734855 TTGTCAGTCAAAGAAGTAACTGC 57.265 39.130 0.00 0.00 39.15 4.40
8494 12210 0.251297 CACAAGGAGTTGGGCATGGA 60.251 55.000 0.00 0.00 38.07 3.41
8495 12211 0.251341 ACAAGGAGTTGGGCATGGAC 60.251 55.000 0.00 0.00 38.07 4.02
8496 12212 1.002134 AAGGAGTTGGGCATGGACG 60.002 57.895 0.00 0.00 0.00 4.79
8557 12291 1.312371 GCACCCAAGCCGCTGATTTA 61.312 55.000 0.00 0.00 0.00 1.40
8559 12293 0.328258 ACCCAAGCCGCTGATTTAGT 59.672 50.000 0.00 0.00 0.00 2.24
8561 12295 1.133025 CCCAAGCCGCTGATTTAGTTG 59.867 52.381 0.00 0.00 0.00 3.16
8562 12296 2.083774 CCAAGCCGCTGATTTAGTTGA 58.916 47.619 0.00 0.00 0.00 3.18
8563 12297 2.096496 CCAAGCCGCTGATTTAGTTGAG 59.904 50.000 0.00 0.00 0.00 3.02
8564 12298 3.002791 CAAGCCGCTGATTTAGTTGAGA 58.997 45.455 0.00 0.00 0.00 3.27
8566 12300 1.324736 GCCGCTGATTTAGTTGAGACG 59.675 52.381 0.00 0.00 0.00 4.18
8568 12302 3.448686 CCGCTGATTTAGTTGAGACGAT 58.551 45.455 0.00 0.00 0.00 3.73
8569 12303 3.865745 CCGCTGATTTAGTTGAGACGATT 59.134 43.478 0.00 0.00 0.00 3.34
8570 12304 4.330074 CCGCTGATTTAGTTGAGACGATTT 59.670 41.667 0.00 0.00 0.00 2.17
8572 12306 6.201044 CCGCTGATTTAGTTGAGACGATTTAT 59.799 38.462 0.00 0.00 0.00 1.40
8574 12308 8.116753 CGCTGATTTAGTTGAGACGATTTATTT 58.883 33.333 0.00 0.00 0.00 1.40
8683 12417 0.031585 CTCGTTCAGTCCACGGTTCA 59.968 55.000 0.00 0.00 38.23 3.18
8698 12433 2.286772 CGGTTCAGCAAAGCTAACGTTT 60.287 45.455 5.91 0.00 36.40 3.60
8726 12461 0.949105 CCGGTCGGTATGCAATAGCC 60.949 60.000 0.55 0.00 44.14 3.93
8853 13433 9.787532 TTTGTTTTTCAGTGTTTCTCTCTATTG 57.212 29.630 0.00 0.00 0.00 1.90
8854 13434 8.506168 TGTTTTTCAGTGTTTCTCTCTATTGT 57.494 30.769 0.00 0.00 0.00 2.71
8855 13435 8.956426 TGTTTTTCAGTGTTTCTCTCTATTGTT 58.044 29.630 0.00 0.00 0.00 2.83
8856 13436 9.788960 GTTTTTCAGTGTTTCTCTCTATTGTTT 57.211 29.630 0.00 0.00 0.00 2.83
8881 13461 4.857509 TTGGGTTTATTGGTTTCTTCCG 57.142 40.909 0.00 0.00 0.00 4.30
8882 13462 3.158676 TGGGTTTATTGGTTTCTTCCGG 58.841 45.455 0.00 0.00 0.00 5.14
8891 13471 3.893521 TGGTTTCTTCCGGTTTTCTTCT 58.106 40.909 0.00 0.00 0.00 2.85
8892 13472 5.038651 TGGTTTCTTCCGGTTTTCTTCTA 57.961 39.130 0.00 0.00 0.00 2.10
8893 13473 5.438833 TGGTTTCTTCCGGTTTTCTTCTAA 58.561 37.500 0.00 0.00 0.00 2.10
8894 13474 5.887035 TGGTTTCTTCCGGTTTTCTTCTAAA 59.113 36.000 0.00 0.00 0.00 1.85
8895 13475 6.377712 TGGTTTCTTCCGGTTTTCTTCTAAAA 59.622 34.615 0.00 0.00 0.00 1.52
8896 13476 7.093858 TGGTTTCTTCCGGTTTTCTTCTAAAAA 60.094 33.333 0.00 0.00 0.00 1.94
8949 13530 7.976734 TCCATTTTTCAAACACATAACGACTTT 59.023 29.630 0.00 0.00 0.00 2.66
8952 13533 9.965748 ATTTTTCAAACACATAACGACTTTTTG 57.034 25.926 0.00 0.00 0.00 2.44
8968 13549 6.197364 ACTTTTTGAAATACACGTTGACCA 57.803 33.333 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.407832 TCAATGATTACACAATAATGCTTCCTG 58.592 33.333 0.00 0.00 0.00 3.86
324 403 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
325 404 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
326 405 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
327 406 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
328 407 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
329 408 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
330 409 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
331 410 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
332 411 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
340 419 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
341 420 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
343 422 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
344 423 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
351 430 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
352 431 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
353 432 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
354 433 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
355 434 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
356 435 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
357 436 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
358 437 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
359 438 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
360 439 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
361 440 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
362 441 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
363 442 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
364 443 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
365 444 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
375 454 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
376 455 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
377 456 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
378 457 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
395 474 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
396 475 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
397 476 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
398 477 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
399 478 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
400 479 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
408 487 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
409 488 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
410 489 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
411 490 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
412 491 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
413 492 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
414 493 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
415 494 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
416 495 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
417 496 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
418 497 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
419 498 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
420 499 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
421 500 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
422 501 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
423 502 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
424 503 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
425 504 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
426 505 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
427 506 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
428 507 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
429 508 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
430 509 3.339713 AATATACTCCCTCCGTCCCAA 57.660 47.619 0.00 0.00 0.00 4.12
431 510 3.236896 GAAATATACTCCCTCCGTCCCA 58.763 50.000 0.00 0.00 0.00 4.37
432 511 3.006644 GTGAAATATACTCCCTCCGTCCC 59.993 52.174 0.00 0.00 0.00 4.46
433 512 3.006644 GGTGAAATATACTCCCTCCGTCC 59.993 52.174 0.00 0.00 0.00 4.79
434 513 3.305199 CGGTGAAATATACTCCCTCCGTC 60.305 52.174 0.00 0.00 0.00 4.79
435 514 2.626743 CGGTGAAATATACTCCCTCCGT 59.373 50.000 0.00 0.00 0.00 4.69
436 515 2.626743 ACGGTGAAATATACTCCCTCCG 59.373 50.000 0.00 0.00 40.94 4.63
437 516 3.305199 CGACGGTGAAATATACTCCCTCC 60.305 52.174 0.00 0.00 0.00 4.30
438 517 3.567164 TCGACGGTGAAATATACTCCCTC 59.433 47.826 0.00 0.00 0.00 4.30
439 518 3.559069 TCGACGGTGAAATATACTCCCT 58.441 45.455 0.00 0.00 0.00 4.20
440 519 3.996150 TCGACGGTGAAATATACTCCC 57.004 47.619 0.00 0.00 0.00 4.30
441 520 4.156915 CGATCGACGGTGAAATATACTCC 58.843 47.826 10.26 0.00 38.46 3.85
442 521 3.602915 GCGATCGACGGTGAAATATACTC 59.397 47.826 21.57 0.00 42.83 2.59
443 522 3.562505 GCGATCGACGGTGAAATATACT 58.437 45.455 21.57 0.00 42.83 2.12
450 529 2.126228 GTGGCGATCGACGGTGAA 60.126 61.111 21.57 0.00 42.83 3.18
473 557 0.251386 TGCGAGGGAGAGACAGAGTT 60.251 55.000 0.00 0.00 0.00 3.01
474 558 0.033601 ATGCGAGGGAGAGACAGAGT 60.034 55.000 0.00 0.00 0.00 3.24
475 559 1.110442 AATGCGAGGGAGAGACAGAG 58.890 55.000 0.00 0.00 0.00 3.35
476 560 1.205655 CAAATGCGAGGGAGAGACAGA 59.794 52.381 0.00 0.00 0.00 3.41
477 561 1.649664 CAAATGCGAGGGAGAGACAG 58.350 55.000 0.00 0.00 0.00 3.51
486 570 1.377725 AGTGAGGCCAAATGCGAGG 60.378 57.895 5.01 0.00 42.61 4.63
515 599 3.288381 AGGTGGCTCCTCCCTCCT 61.288 66.667 1.37 0.00 44.42 3.69
530 614 1.379642 GGGGAAGAAGCGAATGCAGG 61.380 60.000 0.00 0.00 46.23 4.85
536 620 2.656069 CCTCCGGGGAAGAAGCGAA 61.656 63.158 0.37 0.00 37.23 4.70
641 737 8.762481 ATACAAAAAGGAAACTAAACAGACCT 57.238 30.769 0.00 0.00 42.68 3.85
651 747 6.294508 CCATGTCGGAATACAAAAAGGAAACT 60.295 38.462 0.00 0.00 39.39 2.66
729 825 7.044181 AGCTAACTAACTAAAATTACGGGTCC 58.956 38.462 0.00 0.00 0.00 4.46
734 830 8.868635 AGGCTAGCTAACTAACTAAAATTACG 57.131 34.615 15.72 0.00 0.00 3.18
739 835 7.769044 CCATTGAGGCTAGCTAACTAACTAAAA 59.231 37.037 15.72 0.53 0.00 1.52
741 837 6.383147 ACCATTGAGGCTAGCTAACTAACTAA 59.617 38.462 15.72 0.00 43.14 2.24
742 838 5.897824 ACCATTGAGGCTAGCTAACTAACTA 59.102 40.000 15.72 0.00 43.14 2.24
743 839 4.717280 ACCATTGAGGCTAGCTAACTAACT 59.283 41.667 15.72 0.25 43.14 2.24
744 840 5.024785 ACCATTGAGGCTAGCTAACTAAC 57.975 43.478 15.72 0.00 43.14 2.34
814 920 9.638239 GCTATTCATTGGTCACTGAAAATTAAA 57.362 29.630 7.62 0.00 34.42 1.52
815 921 8.250332 GGCTATTCATTGGTCACTGAAAATTAA 58.750 33.333 7.62 0.00 34.42 1.40
816 922 7.415095 CGGCTATTCATTGGTCACTGAAAATTA 60.415 37.037 7.62 0.00 34.42 1.40
819 925 4.155826 CGGCTATTCATTGGTCACTGAAAA 59.844 41.667 7.62 0.00 34.42 2.29
917 1047 1.741706 ACGGAAAGCTGATCATTGCAG 59.258 47.619 9.38 0.00 36.47 4.41
976 1110 4.082895 GCGTAGGAGTGTTTCTAGTCAGAA 60.083 45.833 0.00 0.00 39.06 3.02
985 1119 1.438651 TGCATGCGTAGGAGTGTTTC 58.561 50.000 14.09 0.00 0.00 2.78
997 1132 3.811722 TCTTTTAGACAGTTGCATGCG 57.188 42.857 14.09 0.35 0.00 4.73
1020 1155 9.642343 AGAAAAGATATATTACCCCTTGGTTTC 57.358 33.333 0.00 0.00 44.75 2.78
1024 1178 9.503399 GTGTAGAAAAGATATATTACCCCTTGG 57.497 37.037 0.00 0.00 37.80 3.61
1127 1294 4.712337 ACATTCTCCTAGTGTTCCCTGTAG 59.288 45.833 0.00 0.00 0.00 2.74
1200 1371 4.312443 TGGGCTTGTACGAGTTCTTTTAG 58.688 43.478 11.83 0.00 0.00 1.85
1256 1427 6.476243 TTTTTGACCGTAGCTACATCTTTC 57.524 37.500 23.21 11.35 0.00 2.62
1270 1441 1.271926 ACTCCAGGGGATTTTTGACCG 60.272 52.381 0.00 0.00 0.00 4.79
1276 1447 2.225369 CCAAAGGACTCCAGGGGATTTT 60.225 50.000 0.00 0.00 0.00 1.82
1325 1520 4.283467 TGATCCTACGGAACATTAGGGATG 59.717 45.833 0.00 0.00 35.18 3.51
1393 1588 2.093973 ACTTCGGTGACTGGAAGCATAG 60.094 50.000 13.91 0.00 42.62 2.23
1394 1589 1.899814 ACTTCGGTGACTGGAAGCATA 59.100 47.619 13.91 0.00 42.62 3.14
1395 1590 0.687354 ACTTCGGTGACTGGAAGCAT 59.313 50.000 13.91 0.00 42.62 3.79
1430 3550 1.946768 ACGCACAACACATAGCAAGTT 59.053 42.857 0.00 0.00 0.00 2.66
1433 3553 0.040514 GCACGCACAACACATAGCAA 60.041 50.000 0.00 0.00 0.00 3.91
1434 3554 0.884259 AGCACGCACAACACATAGCA 60.884 50.000 0.00 0.00 0.00 3.49
1435 3555 0.238289 AAGCACGCACAACACATAGC 59.762 50.000 0.00 0.00 0.00 2.97
1436 3556 1.954437 CAAGCACGCACAACACATAG 58.046 50.000 0.00 0.00 0.00 2.23
1437 3557 0.040514 GCAAGCACGCACAACACATA 60.041 50.000 0.00 0.00 0.00 2.29
1438 3558 1.299316 GCAAGCACGCACAACACAT 60.299 52.632 0.00 0.00 0.00 3.21
1439 3559 2.101965 GCAAGCACGCACAACACA 59.898 55.556 0.00 0.00 0.00 3.72
1440 3560 1.940758 CAGCAAGCACGCACAACAC 60.941 57.895 0.00 0.00 0.00 3.32
1441 3561 2.405805 ACAGCAAGCACGCACAACA 61.406 52.632 0.00 0.00 0.00 3.33
1442 3562 1.940758 CACAGCAAGCACGCACAAC 60.941 57.895 0.00 0.00 0.00 3.32
1443 3563 2.321668 GACACAGCAAGCACGCACAA 62.322 55.000 0.00 0.00 0.00 3.33
1444 3564 2.822758 GACACAGCAAGCACGCACA 61.823 57.895 0.00 0.00 0.00 4.57
1445 3565 2.051882 GACACAGCAAGCACGCAC 60.052 61.111 0.00 0.00 0.00 5.34
1446 3566 2.203056 AGACACAGCAAGCACGCA 60.203 55.556 0.00 0.00 0.00 5.24
1447 3567 2.250485 CAGACACAGCAAGCACGC 59.750 61.111 0.00 0.00 0.00 5.34
1448 3568 2.250485 GCAGACACAGCAAGCACG 59.750 61.111 0.00 0.00 0.00 5.34
1449 3569 2.250485 CGCAGACACAGCAAGCAC 59.750 61.111 0.00 0.00 0.00 4.40
1450 3570 2.203056 ACGCAGACACAGCAAGCA 60.203 55.556 0.00 0.00 0.00 3.91
1451 3571 2.051804 AACACGCAGACACAGCAAGC 62.052 55.000 0.00 0.00 0.00 4.01
1452 3572 0.316442 CAACACGCAGACACAGCAAG 60.316 55.000 0.00 0.00 0.00 4.01
1453 3573 1.713937 CCAACACGCAGACACAGCAA 61.714 55.000 0.00 0.00 0.00 3.91
1454 3574 2.179547 CCAACACGCAGACACAGCA 61.180 57.895 0.00 0.00 0.00 4.41
1455 3575 2.633657 CCAACACGCAGACACAGC 59.366 61.111 0.00 0.00 0.00 4.40
1456 3576 2.896801 GCCCAACACGCAGACACAG 61.897 63.158 0.00 0.00 0.00 3.66
1457 3577 2.884997 AAGCCCAACACGCAGACACA 62.885 55.000 0.00 0.00 0.00 3.72
1458 3578 2.186826 AAGCCCAACACGCAGACAC 61.187 57.895 0.00 0.00 0.00 3.67
1459 3579 2.186160 CAAGCCCAACACGCAGACA 61.186 57.895 0.00 0.00 0.00 3.41
1460 3580 1.724582 AACAAGCCCAACACGCAGAC 61.725 55.000 0.00 0.00 0.00 3.51
1461 3581 1.453015 AACAAGCCCAACACGCAGA 60.453 52.632 0.00 0.00 0.00 4.26
1462 3582 1.299316 CAACAAGCCCAACACGCAG 60.299 57.895 0.00 0.00 0.00 5.18
1463 3583 2.049185 ACAACAAGCCCAACACGCA 61.049 52.632 0.00 0.00 0.00 5.24
1464 3584 1.588667 CACAACAAGCCCAACACGC 60.589 57.895 0.00 0.00 0.00 5.34
1465 3585 1.588667 GCACAACAAGCCCAACACG 60.589 57.895 0.00 0.00 0.00 4.49
1466 3586 0.528249 CAGCACAACAAGCCCAACAC 60.528 55.000 0.00 0.00 0.00 3.32
1467 3587 0.969917 ACAGCACAACAAGCCCAACA 60.970 50.000 0.00 0.00 0.00 3.33
1468 3588 0.528249 CACAGCACAACAAGCCCAAC 60.528 55.000 0.00 0.00 0.00 3.77
1469 3589 1.815196 CACAGCACAACAAGCCCAA 59.185 52.632 0.00 0.00 0.00 4.12
1470 3590 2.784356 GCACAGCACAACAAGCCCA 61.784 57.895 0.00 0.00 0.00 5.36
1471 3591 2.028043 GCACAGCACAACAAGCCC 59.972 61.111 0.00 0.00 0.00 5.19
1472 3592 2.028043 GGCACAGCACAACAAGCC 59.972 61.111 0.00 0.00 34.71 4.35
1473 3593 2.028043 GGGCACAGCACAACAAGC 59.972 61.111 0.00 0.00 0.00 4.01
1474 3594 1.066257 GTGGGCACAGCACAACAAG 59.934 57.895 0.00 0.00 46.28 3.16
1475 3595 1.665264 CTGTGGGCACAGCACAACAA 61.665 55.000 0.00 0.00 46.28 2.83
1476 3596 2.044551 TGTGGGCACAGCACAACA 60.045 55.556 0.00 0.00 46.28 3.33
1477 3597 2.723746 CTGTGGGCACAGCACAAC 59.276 61.111 0.00 0.00 46.28 3.32
1484 3604 2.203337 GGTTCAGCTGTGGGCACA 60.203 61.111 14.67 0.00 44.79 4.57
1485 3605 1.968540 GAGGTTCAGCTGTGGGCAC 60.969 63.158 14.67 4.12 44.79 5.01
1486 3606 2.431683 GAGGTTCAGCTGTGGGCA 59.568 61.111 14.67 0.00 44.79 5.36
1487 3607 2.743928 CGAGGTTCAGCTGTGGGC 60.744 66.667 14.67 2.49 42.19 5.36
1488 3608 0.535102 AAACGAGGTTCAGCTGTGGG 60.535 55.000 14.67 1.28 0.00 4.61
1489 3609 0.588252 CAAACGAGGTTCAGCTGTGG 59.412 55.000 14.67 0.00 0.00 4.17
1490 3610 1.581934 TCAAACGAGGTTCAGCTGTG 58.418 50.000 14.67 0.89 0.00 3.66
1491 3611 2.146342 CATCAAACGAGGTTCAGCTGT 58.854 47.619 14.67 0.00 0.00 4.40
1492 3612 2.146342 ACATCAAACGAGGTTCAGCTG 58.854 47.619 7.63 7.63 0.00 4.24
1493 3613 2.550830 ACATCAAACGAGGTTCAGCT 57.449 45.000 0.00 0.00 0.00 4.24
1494 3614 3.243068 ACAAACATCAAACGAGGTTCAGC 60.243 43.478 0.00 0.00 36.45 4.26
1495 3615 4.201910 ACACAAACATCAAACGAGGTTCAG 60.202 41.667 0.00 0.00 36.45 3.02
1496 3616 3.692101 ACACAAACATCAAACGAGGTTCA 59.308 39.130 0.00 0.00 36.45 3.18
1497 3617 4.035017 CACACAAACATCAAACGAGGTTC 58.965 43.478 0.00 0.00 36.45 3.62
1498 3618 3.442273 ACACACAAACATCAAACGAGGTT 59.558 39.130 0.00 0.00 38.98 3.50
1499 3619 3.013921 ACACACAAACATCAAACGAGGT 58.986 40.909 0.00 0.00 0.00 3.85
1500 3620 3.181501 ACACACACAAACATCAAACGAGG 60.182 43.478 0.00 0.00 0.00 4.63
1501 3621 3.785521 CACACACACAAACATCAAACGAG 59.214 43.478 0.00 0.00 0.00 4.18
1502 3622 3.189495 ACACACACACAAACATCAAACGA 59.811 39.130 0.00 0.00 0.00 3.85
1503 3623 3.497118 ACACACACACAAACATCAAACG 58.503 40.909 0.00 0.00 0.00 3.60
1504 3624 5.458452 CCATACACACACACAAACATCAAAC 59.542 40.000 0.00 0.00 0.00 2.93
1505 3625 5.126222 ACCATACACACACACAAACATCAAA 59.874 36.000 0.00 0.00 0.00 2.69
1506 3626 4.642437 ACCATACACACACACAAACATCAA 59.358 37.500 0.00 0.00 0.00 2.57
1507 3627 4.203226 ACCATACACACACACAAACATCA 58.797 39.130 0.00 0.00 0.00 3.07
1508 3628 4.829064 ACCATACACACACACAAACATC 57.171 40.909 0.00 0.00 0.00 3.06
1509 3629 4.400884 ACAACCATACACACACACAAACAT 59.599 37.500 0.00 0.00 0.00 2.71
1510 3630 3.759086 ACAACCATACACACACACAAACA 59.241 39.130 0.00 0.00 0.00 2.83
1511 3631 4.095782 AGACAACCATACACACACACAAAC 59.904 41.667 0.00 0.00 0.00 2.93
1512 3632 4.095632 CAGACAACCATACACACACACAAA 59.904 41.667 0.00 0.00 0.00 2.83
1513 3633 3.625313 CAGACAACCATACACACACACAA 59.375 43.478 0.00 0.00 0.00 3.33
1514 3634 3.202097 CAGACAACCATACACACACACA 58.798 45.455 0.00 0.00 0.00 3.72
1515 3635 3.002246 CACAGACAACCATACACACACAC 59.998 47.826 0.00 0.00 0.00 3.82
1516 3636 3.118592 TCACAGACAACCATACACACACA 60.119 43.478 0.00 0.00 0.00 3.72
1517 3637 3.462982 TCACAGACAACCATACACACAC 58.537 45.455 0.00 0.00 0.00 3.82
1518 3638 3.386402 TCTCACAGACAACCATACACACA 59.614 43.478 0.00 0.00 0.00 3.72
1519 3639 3.741344 GTCTCACAGACAACCATACACAC 59.259 47.826 0.00 0.00 44.45 3.82
1520 3640 3.244078 GGTCTCACAGACAACCATACACA 60.244 47.826 6.03 0.00 46.79 3.72
1521 3641 3.006967 AGGTCTCACAGACAACCATACAC 59.993 47.826 6.03 0.00 46.79 2.90
1522 3642 3.239449 AGGTCTCACAGACAACCATACA 58.761 45.455 6.03 0.00 46.79 2.29
1523 3643 3.963428 AGGTCTCACAGACAACCATAC 57.037 47.619 6.03 0.00 46.79 2.39
1524 3644 3.557054 GCAAGGTCTCACAGACAACCATA 60.557 47.826 6.03 0.00 46.79 2.74
1525 3645 2.811873 GCAAGGTCTCACAGACAACCAT 60.812 50.000 6.03 0.00 46.79 3.55
1526 3646 1.475034 GCAAGGTCTCACAGACAACCA 60.475 52.381 6.03 0.00 46.79 3.67
1527 3647 1.230324 GCAAGGTCTCACAGACAACC 58.770 55.000 6.03 0.00 46.79 3.77
1528 3648 1.202698 AGGCAAGGTCTCACAGACAAC 60.203 52.381 6.03 0.00 46.79 3.32
1529 3649 1.131638 AGGCAAGGTCTCACAGACAA 58.868 50.000 6.03 0.00 46.79 3.18
1530 3650 0.394192 CAGGCAAGGTCTCACAGACA 59.606 55.000 6.03 0.00 46.79 3.41
1531 3651 0.952984 GCAGGCAAGGTCTCACAGAC 60.953 60.000 0.00 0.00 44.32 3.51
1532 3652 1.372683 GCAGGCAAGGTCTCACAGA 59.627 57.895 0.00 0.00 0.00 3.41
1533 3653 2.031516 CGCAGGCAAGGTCTCACAG 61.032 63.158 0.00 0.00 0.00 3.66
1534 3654 2.031012 CGCAGGCAAGGTCTCACA 59.969 61.111 0.00 0.00 0.00 3.58
1535 3655 2.743928 CCGCAGGCAAGGTCTCAC 60.744 66.667 0.00 0.00 46.14 3.51
1551 3671 3.582120 CACACACACACCGCCACC 61.582 66.667 0.00 0.00 0.00 4.61
1552 3672 1.928706 AAACACACACACACCGCCAC 61.929 55.000 0.00 0.00 0.00 5.01
1553 3673 1.244697 AAAACACACACACACCGCCA 61.245 50.000 0.00 0.00 0.00 5.69
1554 3674 0.109039 AAAAACACACACACACCGCC 60.109 50.000 0.00 0.00 0.00 6.13
1555 3675 1.135517 AGAAAAACACACACACACCGC 60.136 47.619 0.00 0.00 0.00 5.68
1556 3676 2.095466 ACAGAAAAACACACACACACCG 60.095 45.455 0.00 0.00 0.00 4.94
1557 3677 3.569250 ACAGAAAAACACACACACACC 57.431 42.857 0.00 0.00 0.00 4.16
1558 3678 3.672867 CCAACAGAAAAACACACACACAC 59.327 43.478 0.00 0.00 0.00 3.82
1559 3679 3.319405 ACCAACAGAAAAACACACACACA 59.681 39.130 0.00 0.00 0.00 3.72
1560 3680 3.908213 ACCAACAGAAAAACACACACAC 58.092 40.909 0.00 0.00 0.00 3.82
1561 3681 4.762765 AGTACCAACAGAAAAACACACACA 59.237 37.500 0.00 0.00 0.00 3.72
1562 3682 5.123344 AGAGTACCAACAGAAAAACACACAC 59.877 40.000 0.00 0.00 0.00 3.82
1563 3683 5.123186 CAGAGTACCAACAGAAAAACACACA 59.877 40.000 0.00 0.00 0.00 3.72
1564 3684 5.123344 ACAGAGTACCAACAGAAAAACACAC 59.877 40.000 0.00 0.00 0.00 3.82
1565 3685 5.250200 ACAGAGTACCAACAGAAAAACACA 58.750 37.500 0.00 0.00 0.00 3.72
1566 3686 5.813080 ACAGAGTACCAACAGAAAAACAC 57.187 39.130 0.00 0.00 0.00 3.32
1567 3687 5.941058 TCAACAGAGTACCAACAGAAAAACA 59.059 36.000 0.00 0.00 0.00 2.83
1568 3688 6.128117 TGTCAACAGAGTACCAACAGAAAAAC 60.128 38.462 0.00 0.00 0.00 2.43
1569 3689 5.941058 TGTCAACAGAGTACCAACAGAAAAA 59.059 36.000 0.00 0.00 0.00 1.94
1570 3690 5.492895 TGTCAACAGAGTACCAACAGAAAA 58.507 37.500 0.00 0.00 0.00 2.29
1571 3691 5.092554 TGTCAACAGAGTACCAACAGAAA 57.907 39.130 0.00 0.00 0.00 2.52
1572 3692 4.746535 TGTCAACAGAGTACCAACAGAA 57.253 40.909 0.00 0.00 0.00 3.02
1573 3693 4.955811 ATGTCAACAGAGTACCAACAGA 57.044 40.909 0.00 0.00 0.00 3.41
1574 3694 4.816385 ACAATGTCAACAGAGTACCAACAG 59.184 41.667 0.00 0.00 0.00 3.16
1575 3695 4.574421 CACAATGTCAACAGAGTACCAACA 59.426 41.667 0.00 0.00 0.00 3.33
1576 3696 4.554723 GCACAATGTCAACAGAGTACCAAC 60.555 45.833 0.00 0.00 0.00 3.77
1577 3697 3.563808 GCACAATGTCAACAGAGTACCAA 59.436 43.478 0.00 0.00 0.00 3.67
1578 3698 3.138304 GCACAATGTCAACAGAGTACCA 58.862 45.455 0.00 0.00 0.00 3.25
1579 3699 3.403038 AGCACAATGTCAACAGAGTACC 58.597 45.455 0.00 0.00 0.00 3.34
1580 3700 3.121944 CGAGCACAATGTCAACAGAGTAC 59.878 47.826 0.00 0.00 0.00 2.73
1581 3701 3.317150 CGAGCACAATGTCAACAGAGTA 58.683 45.455 0.00 0.00 0.00 2.59
1582 3702 2.138320 CGAGCACAATGTCAACAGAGT 58.862 47.619 0.00 0.00 0.00 3.24
1583 3703 1.462283 CCGAGCACAATGTCAACAGAG 59.538 52.381 0.00 0.00 0.00 3.35
1584 3704 1.202639 ACCGAGCACAATGTCAACAGA 60.203 47.619 0.00 0.00 0.00 3.41
1585 3705 1.069703 CACCGAGCACAATGTCAACAG 60.070 52.381 0.00 0.00 0.00 3.16
1586 3706 0.943673 CACCGAGCACAATGTCAACA 59.056 50.000 0.00 0.00 0.00 3.33
1587 3707 0.238289 CCACCGAGCACAATGTCAAC 59.762 55.000 0.00 0.00 0.00 3.18
1588 3708 0.179032 ACCACCGAGCACAATGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
1589 3709 0.179032 AACCACCGAGCACAATGTCA 60.179 50.000 0.00 0.00 0.00 3.58
1590 3710 0.238289 CAACCACCGAGCACAATGTC 59.762 55.000 0.00 0.00 0.00 3.06
1591 3711 1.795170 GCAACCACCGAGCACAATGT 61.795 55.000 0.00 0.00 0.00 2.71
1592 3712 1.081242 GCAACCACCGAGCACAATG 60.081 57.895 0.00 0.00 0.00 2.82
1593 3713 0.823356 AAGCAACCACCGAGCACAAT 60.823 50.000 0.00 0.00 0.00 2.71
1594 3714 1.034838 AAAGCAACCACCGAGCACAA 61.035 50.000 0.00 0.00 0.00 3.33
1595 3715 0.179043 TAAAGCAACCACCGAGCACA 60.179 50.000 0.00 0.00 0.00 4.57
1596 3716 1.165270 ATAAAGCAACCACCGAGCAC 58.835 50.000 0.00 0.00 0.00 4.40
1597 3717 1.904287 AATAAAGCAACCACCGAGCA 58.096 45.000 0.00 0.00 0.00 4.26
1598 3718 4.632538 ATAAATAAAGCAACCACCGAGC 57.367 40.909 0.00 0.00 0.00 5.03
1611 3731 3.818180 TCCGCCCCGCTTTATAAATAAA 58.182 40.909 0.00 0.00 0.00 1.40
1612 3732 3.488778 TCCGCCCCGCTTTATAAATAA 57.511 42.857 0.00 0.00 0.00 1.40
1613 3733 3.404899 CTTCCGCCCCGCTTTATAAATA 58.595 45.455 0.00 0.00 0.00 1.40
1614 3734 2.227194 CTTCCGCCCCGCTTTATAAAT 58.773 47.619 0.00 0.00 0.00 1.40
1615 3735 1.670791 CTTCCGCCCCGCTTTATAAA 58.329 50.000 0.00 0.00 0.00 1.40
1616 3736 0.816421 GCTTCCGCCCCGCTTTATAA 60.816 55.000 0.00 0.00 0.00 0.98
1617 3737 1.227734 GCTTCCGCCCCGCTTTATA 60.228 57.895 0.00 0.00 0.00 0.98
1618 3738 2.516225 GCTTCCGCCCCGCTTTAT 60.516 61.111 0.00 0.00 0.00 1.40
1628 3748 0.876399 TTACCGAAAAAGGCTTCCGC 59.124 50.000 0.00 0.00 33.69 5.54
1629 3749 1.198408 GGTTACCGAAAAAGGCTTCCG 59.802 52.381 0.00 4.96 33.69 4.30
1630 3750 2.511659 AGGTTACCGAAAAAGGCTTCC 58.488 47.619 0.00 0.00 33.69 3.46
1631 3751 4.155462 CCTAAGGTTACCGAAAAAGGCTTC 59.845 45.833 0.00 0.00 33.69 3.86
1632 3752 4.077108 CCTAAGGTTACCGAAAAAGGCTT 58.923 43.478 0.00 0.00 33.69 4.35
1633 3753 3.328637 TCCTAAGGTTACCGAAAAAGGCT 59.671 43.478 0.00 0.00 33.69 4.58
1634 3754 3.438087 GTCCTAAGGTTACCGAAAAAGGC 59.562 47.826 0.00 0.00 33.69 4.35
1635 3755 3.681417 CGTCCTAAGGTTACCGAAAAAGG 59.319 47.826 0.00 0.26 37.30 3.11
1636 3756 4.559153 TCGTCCTAAGGTTACCGAAAAAG 58.441 43.478 0.00 0.00 0.00 2.27
1637 3757 4.599047 TCGTCCTAAGGTTACCGAAAAA 57.401 40.909 0.00 0.00 0.00 1.94
1638 3758 4.806640 ATCGTCCTAAGGTTACCGAAAA 57.193 40.909 0.00 0.00 0.00 2.29
1639 3759 5.221303 CCATATCGTCCTAAGGTTACCGAAA 60.221 44.000 0.00 0.00 0.00 3.46
1640 3760 4.279169 CCATATCGTCCTAAGGTTACCGAA 59.721 45.833 0.00 0.00 0.00 4.30
1641 3761 3.822735 CCATATCGTCCTAAGGTTACCGA 59.177 47.826 0.00 0.00 0.00 4.69
1642 3762 3.822735 TCCATATCGTCCTAAGGTTACCG 59.177 47.826 0.00 0.00 0.00 4.02
1643 3763 5.796424 TTCCATATCGTCCTAAGGTTACC 57.204 43.478 0.00 0.00 0.00 2.85
1644 3764 7.889469 TGTATTCCATATCGTCCTAAGGTTAC 58.111 38.462 0.00 0.00 0.00 2.50
1645 3765 8.660295 ATGTATTCCATATCGTCCTAAGGTTA 57.340 34.615 0.00 0.00 29.82 2.85
1646 3766 6.989155 TGTATTCCATATCGTCCTAAGGTT 57.011 37.500 0.00 0.00 0.00 3.50
1647 3767 7.455008 AGAATGTATTCCATATCGTCCTAAGGT 59.545 37.037 1.16 0.00 37.51 3.50
1648 3768 7.761704 CAGAATGTATTCCATATCGTCCTAAGG 59.238 40.741 1.16 0.00 37.51 2.69
1649 3769 8.694975 CAGAATGTATTCCATATCGTCCTAAG 57.305 38.462 1.16 0.00 37.51 2.18
1723 3843 2.604912 TTGCTCTGTCTCTCCACCTA 57.395 50.000 0.00 0.00 0.00 3.08
1741 3861 7.174946 CACAAGTCATGTTGGTAGGAACTTATT 59.825 37.037 0.00 0.00 41.46 1.40
1787 3907 2.168496 AGCTAGTTCTACCAGCAACGA 58.832 47.619 0.00 0.00 37.78 3.85
1899 4045 4.536364 TGCTCGAGAAAACAGAAAACAG 57.464 40.909 18.75 0.00 0.00 3.16
2147 4300 1.798626 ATCTCTGCCTGCACCATCTA 58.201 50.000 0.00 0.00 0.00 1.98
2195 4348 8.031277 GCATTCTTTTGTTCCTGATTAGAATGT 58.969 33.333 17.91 0.00 44.47 2.71
2416 4569 3.981211 TGCTTTGCAGATTTTGTCTTCC 58.019 40.909 0.00 0.00 34.00 3.46
2493 4646 6.962182 AGGTGAACCTGAGATCAAATATCAA 58.038 36.000 0.00 0.00 46.55 2.57
3150 5303 3.820557 TGTGGGATATTAAAGCAGCTCC 58.179 45.455 0.00 0.00 0.00 4.70
3161 5314 6.555711 CCCCTTTTGATAGATGTGGGATATT 58.444 40.000 0.00 0.00 35.40 1.28
3200 5353 4.953010 TGCTTCTGCCTTGCGCCA 62.953 61.111 4.18 0.00 38.71 5.69
3422 5575 3.822735 TCTCTGATTGCAACCTTTTCTGG 59.177 43.478 0.00 0.00 0.00 3.86
3970 6123 4.899352 ACTCCACAGATTGCTACTTTCT 57.101 40.909 0.00 0.00 0.00 2.52
4010 6163 7.678171 TCCCCAAGTATGCATGATAATAGACTA 59.322 37.037 10.16 0.00 0.00 2.59
4203 6356 5.070770 TCGCCATTTGCAAATAGTTCAAT 57.929 34.783 23.69 0.00 41.33 2.57
4367 6520 6.474102 TGAATAAACAAACCTCGAAAAGTTGC 59.526 34.615 0.00 0.00 0.00 4.17
4377 6530 6.575162 ATGGACACTGAATAAACAAACCTC 57.425 37.500 0.00 0.00 0.00 3.85
4417 6570 9.840427 GTCAAGTTAACAGCATACAAACATTAT 57.160 29.630 8.61 0.00 0.00 1.28
4829 7253 3.769844 CTGGCTATGGGTTCCGACTATAT 59.230 47.826 0.00 0.00 0.00 0.86
4830 7254 3.162666 CTGGCTATGGGTTCCGACTATA 58.837 50.000 0.00 0.00 0.00 1.31
4840 7264 2.683475 GGTTGCCTGGCTATGGGT 59.317 61.111 21.03 0.00 0.00 4.51
4857 7281 4.607955 TCTCGGCATTTATTACAGACTCG 58.392 43.478 0.00 0.00 0.00 4.18
4866 7290 2.945668 GCTGGAACTCTCGGCATTTATT 59.054 45.455 0.00 0.00 0.00 1.40
4969 7393 4.410228 AGACTCTTGCTTCAATATGCCCTA 59.590 41.667 0.00 0.00 0.00 3.53
4998 7422 8.620116 TTTCATTGATAACTTGTGAGACATCA 57.380 30.769 0.00 0.00 0.00 3.07
5034 7458 6.349115 CCTTTTCTCATTCCTCATCTTGTGTG 60.349 42.308 0.00 0.00 0.00 3.82
5050 7474 1.005924 GCCAATCCCTCCCTTTTCTCA 59.994 52.381 0.00 0.00 0.00 3.27
5380 7804 1.546029 GGGTGTGGAATCAAAGAAGGC 59.454 52.381 0.00 0.00 0.00 4.35
5772 8216 1.004079 GGAAAACAACGCGTACGGAAA 60.004 47.619 14.46 0.00 46.04 3.13
5773 8217 0.581053 GGAAAACAACGCGTACGGAA 59.419 50.000 14.46 0.00 46.04 4.30
5774 8218 0.529337 TGGAAAACAACGCGTACGGA 60.529 50.000 14.46 0.00 46.04 4.69
5775 8219 0.111001 CTGGAAAACAACGCGTACGG 60.111 55.000 14.46 8.20 46.04 4.02
5777 8221 1.219646 TCCTGGAAAACAACGCGTAC 58.780 50.000 14.46 0.00 0.00 3.67
5778 8222 1.868498 CTTCCTGGAAAACAACGCGTA 59.132 47.619 14.46 0.00 0.00 4.42
5779 8223 0.661020 CTTCCTGGAAAACAACGCGT 59.339 50.000 5.58 5.58 0.00 6.01
5780 8224 0.660300 GCTTCCTGGAAAACAACGCG 60.660 55.000 10.86 3.53 0.00 6.01
5781 8225 0.318699 GGCTTCCTGGAAAACAACGC 60.319 55.000 10.86 8.88 0.00 4.84
5782 8226 1.028905 TGGCTTCCTGGAAAACAACG 58.971 50.000 10.86 0.00 0.00 4.10
5783 8227 3.751479 AATGGCTTCCTGGAAAACAAC 57.249 42.857 10.86 0.25 0.00 3.32
5784 8228 4.280677 CACTAATGGCTTCCTGGAAAACAA 59.719 41.667 10.86 0.00 0.00 2.83
5785 8229 3.826157 CACTAATGGCTTCCTGGAAAACA 59.174 43.478 10.86 12.18 0.00 2.83
5786 8230 3.367395 GCACTAATGGCTTCCTGGAAAAC 60.367 47.826 10.86 6.82 0.00 2.43
5787 8231 2.825532 GCACTAATGGCTTCCTGGAAAA 59.174 45.455 10.86 0.00 0.00 2.29
5907 8370 2.145536 GCCCTTTGAATTTGTTGCAGG 58.854 47.619 0.00 0.00 0.00 4.85
6021 8484 4.024641 GGTCGTAAGTGGTTGTTAACAAGG 60.025 45.833 21.12 4.59 35.90 3.61
6051 8514 2.101415 CTCCACAGCCGAGACATTATGA 59.899 50.000 0.00 0.00 0.00 2.15
6057 8520 2.574018 CCACTCCACAGCCGAGACA 61.574 63.158 0.00 0.00 0.00 3.41
6516 9386 6.862711 AGAGCTTTCCTTTTGTGTTACTAC 57.137 37.500 0.00 0.00 0.00 2.73
6749 10442 2.245096 CGGAAAAGCGCTTGAATCAAG 58.755 47.619 25.80 18.02 43.57 3.02
7199 10893 8.819974 GCAATAGTAAAAATGACCATCCAAATG 58.180 33.333 0.00 0.00 0.00 2.32
7228 10922 8.731275 TGAAACATTACATCATCTTCGGTATT 57.269 30.769 0.00 0.00 0.00 1.89
7464 11160 5.844004 TGTACACAAAAACAAACCTGTTGT 58.156 33.333 0.00 0.00 45.25 3.32
7515 11211 7.594351 TCTCAATAGAGATATGCACACTCTT 57.406 36.000 19.26 8.82 45.73 2.85
8032 11732 1.656652 CTAGTTGGCTTCATGTCGGG 58.343 55.000 0.00 0.00 0.00 5.14
8068 11768 2.701423 TGTGTGTGTGGCCTTTCTACTA 59.299 45.455 3.32 0.00 0.00 1.82
8084 11784 0.726827 GTCTGTGTGGTGTGTGTGTG 59.273 55.000 0.00 0.00 0.00 3.82
8085 11785 0.613260 AGTCTGTGTGGTGTGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72
8100 11807 4.754114 GTGCTTGTCATCTGAAGAAAGTCT 59.246 41.667 0.00 0.00 0.00 3.24
8131 11838 1.183549 TCGTCTCTTTCTAGGTGGGC 58.816 55.000 0.00 0.00 0.00 5.36
8174 11884 3.614616 CGAATCGCCTGAATAATCTAGCC 59.385 47.826 0.00 0.00 0.00 3.93
8199 11909 8.971321 CAGTACATTGCATGGCTTAATAATTTC 58.029 33.333 0.00 0.00 33.60 2.17
8225 11941 3.762823 AGACTGCTTGGTGTACTAGTACC 59.237 47.826 26.41 17.51 35.26 3.34
8238 11954 4.505922 GCTTACATAGTGCTAGACTGCTTG 59.494 45.833 0.00 0.00 35.96 4.01
8262 11978 6.533012 TCTTATTTTTCTCACATCAGAGAGCG 59.467 38.462 0.00 0.00 44.78 5.03
8301 12017 0.037326 AATTCAAGAGCTCACGCGGA 60.037 50.000 17.77 3.82 42.32 5.54
8316 12032 5.106555 TGACAATGCTTTCTCGAGGAAATTC 60.107 40.000 13.56 2.97 42.25 2.17
8332 12048 1.396301 GCTAGTCTGCTGTGACAATGC 59.604 52.381 7.56 0.00 39.27 3.56
8334 12050 2.564504 TCTGCTAGTCTGCTGTGACAAT 59.435 45.455 7.56 0.00 39.27 2.71
8490 12206 1.153568 CGTCAGACCATGCGTCCAT 60.154 57.895 9.80 0.00 43.08 3.41
8492 12208 1.517257 CTCGTCAGACCATGCGTCC 60.517 63.158 9.80 0.00 43.08 4.79
8494 12210 1.244697 ACTCTCGTCAGACCATGCGT 61.245 55.000 0.00 0.00 32.54 5.24
8495 12211 0.733150 TACTCTCGTCAGACCATGCG 59.267 55.000 0.00 0.00 0.00 4.73
8496 12212 3.304794 GGTATACTCTCGTCAGACCATGC 60.305 52.174 2.25 0.00 0.00 4.06
8520 12236 2.012237 CGATGCTTGCGCTCAGATT 58.988 52.632 9.73 0.00 36.97 2.40
8557 12291 3.181510 GCCGCAAATAAATCGTCTCAACT 60.182 43.478 0.00 0.00 0.00 3.16
8559 12293 2.744741 TGCCGCAAATAAATCGTCTCAA 59.255 40.909 0.00 0.00 0.00 3.02
8561 12295 2.351726 AGTGCCGCAAATAAATCGTCTC 59.648 45.455 0.00 0.00 0.00 3.36
8562 12296 2.351726 GAGTGCCGCAAATAAATCGTCT 59.648 45.455 0.00 0.00 0.00 4.18
8563 12297 2.705154 GAGTGCCGCAAATAAATCGTC 58.295 47.619 0.00 0.00 0.00 4.20
8564 12298 1.062002 CGAGTGCCGCAAATAAATCGT 59.938 47.619 0.00 0.00 0.00 3.73
8683 12417 2.034179 GGGTTCAAACGTTAGCTTTGCT 59.966 45.455 0.00 0.00 43.41 3.91
8746 12482 7.277396 GGCCGGCCTTTATATATATTGTCTTA 58.723 38.462 38.76 0.00 0.00 2.10
8747 12483 6.120220 GGCCGGCCTTTATATATATTGTCTT 58.880 40.000 38.76 0.00 0.00 3.01
8758 12494 0.331954 TTGTTGGGCCGGCCTTTATA 59.668 50.000 42.70 23.66 36.10 0.98
8759 12495 0.543174 TTTGTTGGGCCGGCCTTTAT 60.543 50.000 42.70 0.00 36.10 1.40
8761 12497 0.543174 TATTTGTTGGGCCGGCCTTT 60.543 50.000 42.70 21.69 36.10 3.11
8764 12500 1.254975 AACTATTTGTTGGGCCGGCC 61.255 55.000 38.57 38.57 37.52 6.13
8765 12501 0.606096 AAACTATTTGTTGGGCCGGC 59.394 50.000 21.18 21.18 39.13 6.13
8767 12503 2.297597 TCCAAAACTATTTGTTGGGCCG 59.702 45.455 0.00 0.00 43.59 6.13
8768 12504 4.202315 ACTTCCAAAACTATTTGTTGGGCC 60.202 41.667 0.00 0.00 43.59 5.80
8827 13407 9.787532 CAATAGAGAGAAACACTGAAAAACAAA 57.212 29.630 0.00 0.00 0.00 2.83
8921 13501 7.647715 AGTCGTTATGTGTTTGAAAAATGGAAG 59.352 33.333 0.00 0.00 0.00 3.46
8943 13524 5.394322 GGTCAACGTGTATTTCAAAAAGTCG 59.606 40.000 0.00 0.00 0.00 4.18
8949 13530 8.188799 TGTAAATTGGTCAACGTGTATTTCAAA 58.811 29.630 0.00 0.00 0.00 2.69
8952 13533 9.997482 ATATGTAAATTGGTCAACGTGTATTTC 57.003 29.630 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.