Multiple sequence alignment - TraesCS2D01G450200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G450200 chr2D 100.000 3675 0 0 1 3675 559830121 559833795 0.000000e+00 6787.0
1 TraesCS2D01G450200 chr2D 94.917 846 34 6 2836 3675 70390870 70391712 0.000000e+00 1315.0
2 TraesCS2D01G450200 chr2D 86.247 429 39 3 291 705 542136816 542136394 7.240000e-122 448.0
3 TraesCS2D01G450200 chr2B 94.717 2158 90 14 706 2848 668682060 668684208 0.000000e+00 3332.0
4 TraesCS2D01G450200 chr2B 88.599 421 39 8 292 709 188457231 188456817 1.520000e-138 503.0
5 TraesCS2D01G450200 chr2A 94.622 2157 70 20 707 2840 699980082 699982215 0.000000e+00 3299.0
6 TraesCS2D01G450200 chr2A 93.038 158 11 0 134 291 699979933 699980090 7.940000e-57 231.0
7 TraesCS2D01G450200 chr2A 91.111 135 10 2 291 424 758518663 758518530 8.110000e-42 182.0
8 TraesCS2D01G450200 chr2A 93.750 48 2 1 82 129 699979860 699979906 1.830000e-08 71.3
9 TraesCS2D01G450200 chr7D 95.329 835 33 5 2846 3675 351642258 351641425 0.000000e+00 1321.0
10 TraesCS2D01G450200 chr7D 95.000 840 34 7 2842 3675 603599346 603598509 0.000000e+00 1312.0
11 TraesCS2D01G450200 chr7D 95.198 833 31 7 2849 3675 114467276 114468105 0.000000e+00 1308.0
12 TraesCS2D01G450200 chr7D 79.663 1067 189 19 1576 2637 629310879 629311922 0.000000e+00 743.0
13 TraesCS2D01G450200 chr3D 94.976 836 32 8 2846 3675 214958664 214959495 0.000000e+00 1303.0
14 TraesCS2D01G450200 chr3D 94.982 837 31 7 2846 3675 460502835 460502003 0.000000e+00 1303.0
15 TraesCS2D01G450200 chr5D 94.952 832 36 5 2849 3675 448250480 448251310 0.000000e+00 1299.0
16 TraesCS2D01G450200 chr5D 86.543 431 41 3 292 705 244012109 244011679 3.340000e-125 459.0
17 TraesCS2D01G450200 chr5D 86.875 320 37 4 387 705 493521514 493521829 1.620000e-93 353.0
18 TraesCS2D01G450200 chr5D 85.780 218 17 2 292 496 505457734 505457518 6.180000e-53 219.0
19 TraesCS2D01G450200 chr1D 94.832 832 34 7 2849 3675 84729902 84729075 0.000000e+00 1290.0
20 TraesCS2D01G450200 chr1D 94.718 833 37 6 2849 3675 426586358 426585527 0.000000e+00 1288.0
21 TraesCS2D01G450200 chr1D 86.343 432 42 8 292 706 476796069 476796500 4.330000e-124 455.0
22 TraesCS2D01G450200 chr6D 87.411 421 45 7 291 705 102989677 102989259 9.230000e-131 477.0
23 TraesCS2D01G450200 chr6D 86.512 430 39 8 293 705 426933598 426933171 4.330000e-124 455.0
24 TraesCS2D01G450200 chr3B 87.239 431 39 5 292 706 12420958 12420528 9.230000e-131 477.0
25 TraesCS2D01G450200 chr4A 87.007 431 40 6 291 705 552509832 552509402 4.300000e-129 472.0
26 TraesCS2D01G450200 chr4D 86.437 435 42 9 290 708 85826658 85827091 9.300000e-126 460.0
27 TraesCS2D01G450200 chr4D 85.349 430 39 8 292 706 54805100 54804680 1.220000e-114 424.0
28 TraesCS2D01G450200 chr6B 86.480 429 44 7 291 705 538947300 538946872 3.340000e-125 459.0
29 TraesCS2D01G450200 chr6B 85.786 401 37 6 321 704 642460486 642460089 1.230000e-109 407.0
30 TraesCS2D01G450200 chr1A 86.279 430 43 6 292 706 543768908 543768480 1.560000e-123 453.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G450200 chr2D 559830121 559833795 3674 False 6787.000000 6787 100.000000 1 3675 1 chr2D.!!$F2 3674
1 TraesCS2D01G450200 chr2D 70390870 70391712 842 False 1315.000000 1315 94.917000 2836 3675 1 chr2D.!!$F1 839
2 TraesCS2D01G450200 chr2B 668682060 668684208 2148 False 3332.000000 3332 94.717000 706 2848 1 chr2B.!!$F1 2142
3 TraesCS2D01G450200 chr2A 699979860 699982215 2355 False 1200.433333 3299 93.803333 82 2840 3 chr2A.!!$F1 2758
4 TraesCS2D01G450200 chr7D 351641425 351642258 833 True 1321.000000 1321 95.329000 2846 3675 1 chr7D.!!$R1 829
5 TraesCS2D01G450200 chr7D 603598509 603599346 837 True 1312.000000 1312 95.000000 2842 3675 1 chr7D.!!$R2 833
6 TraesCS2D01G450200 chr7D 114467276 114468105 829 False 1308.000000 1308 95.198000 2849 3675 1 chr7D.!!$F1 826
7 TraesCS2D01G450200 chr7D 629310879 629311922 1043 False 743.000000 743 79.663000 1576 2637 1 chr7D.!!$F2 1061
8 TraesCS2D01G450200 chr3D 214958664 214959495 831 False 1303.000000 1303 94.976000 2846 3675 1 chr3D.!!$F1 829
9 TraesCS2D01G450200 chr3D 460502003 460502835 832 True 1303.000000 1303 94.982000 2846 3675 1 chr3D.!!$R1 829
10 TraesCS2D01G450200 chr5D 448250480 448251310 830 False 1299.000000 1299 94.952000 2849 3675 1 chr5D.!!$F1 826
11 TraesCS2D01G450200 chr1D 84729075 84729902 827 True 1290.000000 1290 94.832000 2849 3675 1 chr1D.!!$R1 826
12 TraesCS2D01G450200 chr1D 426585527 426586358 831 True 1288.000000 1288 94.718000 2849 3675 1 chr1D.!!$R2 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 368 0.031994 CCCGGTGCTTCAAAACTTGG 59.968 55.0 0.00 0.00 0.00 3.61 F
402 425 0.178995 TCCAGCACATTGAGGCAACA 60.179 50.0 7.57 0.00 41.41 3.33 F
1455 1496 0.105039 ACAGCGGATGGTAAGCTAGC 59.895 55.0 6.62 6.62 39.48 3.42 F
1548 1596 0.378610 GCCAAGGCGTCTAAGAATGC 59.621 55.0 0.00 0.00 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 1477 0.389391 TCAGCTAGCTTACCATCCGC 59.611 55.0 16.46 0.00 0.0 5.54 R
1493 1541 0.683973 ACCATGAATGCCGGCAAAAA 59.316 45.0 36.33 21.82 0.0 1.94 R
2422 2470 0.107654 CGATGTCCACCTTCCCTTCC 60.108 60.0 0.00 0.00 0.0 3.46 R
2977 3033 0.318441 CGACCTCTCACACACCACAT 59.682 55.0 0.00 0.00 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.588439 AGCGCAGGTGCAGATGAT 59.412 55.556 11.47 0.00 42.21 2.45
50 51 1.523258 AGCGCAGGTGCAGATGATC 60.523 57.895 11.47 0.00 42.21 2.92
51 52 2.541120 GCGCAGGTGCAGATGATCC 61.541 63.158 0.30 0.00 42.21 3.36
52 53 1.145598 CGCAGGTGCAGATGATCCT 59.854 57.895 2.33 0.00 42.21 3.24
53 54 1.158484 CGCAGGTGCAGATGATCCTG 61.158 60.000 13.13 13.13 46.96 3.86
56 57 1.876849 AGGTGCAGATGATCCTGAGT 58.123 50.000 3.41 0.00 36.29 3.41
57 58 1.485480 AGGTGCAGATGATCCTGAGTG 59.515 52.381 3.41 0.00 36.29 3.51
58 59 1.297664 GTGCAGATGATCCTGAGTGC 58.702 55.000 3.41 0.00 36.29 4.40
59 60 0.179702 TGCAGATGATCCTGAGTGCC 59.820 55.000 3.41 0.00 36.29 5.01
60 61 0.179702 GCAGATGATCCTGAGTGCCA 59.820 55.000 3.41 0.00 36.29 4.92
61 62 1.407851 GCAGATGATCCTGAGTGCCAA 60.408 52.381 3.41 0.00 36.29 4.52
62 63 2.942752 GCAGATGATCCTGAGTGCCAAA 60.943 50.000 3.41 0.00 36.29 3.28
63 64 3.349927 CAGATGATCCTGAGTGCCAAAA 58.650 45.455 0.00 0.00 36.29 2.44
64 65 3.128242 CAGATGATCCTGAGTGCCAAAAC 59.872 47.826 0.00 0.00 36.29 2.43
65 66 1.522668 TGATCCTGAGTGCCAAAACG 58.477 50.000 0.00 0.00 0.00 3.60
66 67 0.169009 GATCCTGAGTGCCAAAACGC 59.831 55.000 0.00 0.00 0.00 4.84
67 68 1.244019 ATCCTGAGTGCCAAAACGCC 61.244 55.000 0.00 0.00 0.00 5.68
68 69 1.898574 CCTGAGTGCCAAAACGCCT 60.899 57.895 0.00 0.00 0.00 5.52
69 70 1.576421 CTGAGTGCCAAAACGCCTC 59.424 57.895 0.00 0.00 0.00 4.70
70 71 1.153066 TGAGTGCCAAAACGCCTCA 60.153 52.632 0.00 0.00 35.23 3.86
71 72 1.282875 GAGTGCCAAAACGCCTCAC 59.717 57.895 0.00 0.00 0.00 3.51
72 73 1.152963 AGTGCCAAAACGCCTCACT 60.153 52.632 0.00 0.00 33.61 3.41
73 74 1.166531 AGTGCCAAAACGCCTCACTC 61.167 55.000 0.00 0.00 33.16 3.51
74 75 1.148273 TGCCAAAACGCCTCACTCT 59.852 52.632 0.00 0.00 0.00 3.24
75 76 1.165907 TGCCAAAACGCCTCACTCTG 61.166 55.000 0.00 0.00 0.00 3.35
76 77 1.166531 GCCAAAACGCCTCACTCTGT 61.167 55.000 0.00 0.00 0.00 3.41
77 78 1.876416 GCCAAAACGCCTCACTCTGTA 60.876 52.381 0.00 0.00 0.00 2.74
78 79 2.699954 CCAAAACGCCTCACTCTGTAT 58.300 47.619 0.00 0.00 0.00 2.29
79 80 3.857052 CCAAAACGCCTCACTCTGTATA 58.143 45.455 0.00 0.00 0.00 1.47
80 81 4.442706 CCAAAACGCCTCACTCTGTATAT 58.557 43.478 0.00 0.00 0.00 0.86
111 112 5.713792 TGCCATCGACCAATTTTCTTAAA 57.286 34.783 0.00 0.00 0.00 1.52
112 113 6.090483 TGCCATCGACCAATTTTCTTAAAA 57.910 33.333 0.00 0.00 34.41 1.52
123 124 7.494298 ACCAATTTTCTTAAAATGACAAGCGTT 59.506 29.630 0.00 0.00 40.05 4.84
129 130 6.730175 TCTTAAAATGACAAGCGTTTTAGCA 58.270 32.000 0.00 0.00 44.43 3.49
132 133 2.248280 TGACAAGCGTTTTAGCAGGA 57.752 45.000 0.00 0.00 40.15 3.86
133 134 2.566913 TGACAAGCGTTTTAGCAGGAA 58.433 42.857 0.00 0.00 40.15 3.36
168 191 5.171339 CCTGGCTAGGCTGATTACAATAT 57.829 43.478 22.52 0.00 37.25 1.28
175 198 7.607991 GGCTAGGCTGATTACAATATAATGTGT 59.392 37.037 9.46 0.00 34.75 3.72
213 236 4.904251 AGCAGGAACTACATATGAGGACAT 59.096 41.667 10.38 0.00 36.02 3.06
215 238 6.015010 AGCAGGAACTACATATGAGGACATAC 60.015 42.308 10.38 0.00 38.28 2.39
281 304 4.521639 TCAAGACAGTCCAAGTACACGTAT 59.478 41.667 0.00 0.00 0.00 3.06
282 305 4.436242 AGACAGTCCAAGTACACGTATG 57.564 45.455 0.00 0.00 0.00 2.39
283 306 3.192844 AGACAGTCCAAGTACACGTATGG 59.807 47.826 0.00 0.00 0.00 2.74
284 307 2.232941 ACAGTCCAAGTACACGTATGGG 59.767 50.000 0.00 0.00 33.66 4.00
285 308 2.232941 CAGTCCAAGTACACGTATGGGT 59.767 50.000 0.00 0.00 33.66 4.51
286 309 2.232941 AGTCCAAGTACACGTATGGGTG 59.767 50.000 0.00 0.00 43.54 4.61
287 310 1.066716 TCCAAGTACACGTATGGGTGC 60.067 52.381 0.00 0.00 41.65 5.01
288 311 1.066430 CCAAGTACACGTATGGGTGCT 60.066 52.381 1.55 1.55 41.65 4.40
289 312 1.999735 CAAGTACACGTATGGGTGCTG 59.000 52.381 8.84 0.20 41.65 4.41
290 313 0.108329 AGTACACGTATGGGTGCTGC 60.108 55.000 7.18 0.00 41.65 5.25
291 314 1.153726 TACACGTATGGGTGCTGCG 60.154 57.895 0.00 0.00 41.65 5.18
292 315 2.566057 TACACGTATGGGTGCTGCGG 62.566 60.000 0.00 0.00 41.65 5.69
293 316 4.467084 ACGTATGGGTGCTGCGGG 62.467 66.667 0.00 0.00 0.00 6.13
295 318 3.792736 GTATGGGTGCTGCGGGGA 61.793 66.667 0.00 0.00 0.00 4.81
296 319 3.012119 TATGGGTGCTGCGGGGAA 61.012 61.111 0.00 0.00 0.00 3.97
297 320 2.607568 TATGGGTGCTGCGGGGAAA 61.608 57.895 0.00 0.00 0.00 3.13
298 321 1.932156 TATGGGTGCTGCGGGGAAAT 61.932 55.000 0.00 0.00 0.00 2.17
299 322 1.932156 ATGGGTGCTGCGGGGAAATA 61.932 55.000 0.00 0.00 0.00 1.40
300 323 1.152756 GGGTGCTGCGGGGAAATAT 60.153 57.895 0.00 0.00 0.00 1.28
301 324 1.172812 GGGTGCTGCGGGGAAATATC 61.173 60.000 0.00 0.00 0.00 1.63
302 325 1.172812 GGTGCTGCGGGGAAATATCC 61.173 60.000 0.00 0.00 45.77 2.59
313 336 3.397849 GGAAATATCCGGTACTCCCAC 57.602 52.381 0.00 0.00 35.59 4.61
314 337 2.970640 GGAAATATCCGGTACTCCCACT 59.029 50.000 0.00 0.00 35.59 4.00
315 338 3.006644 GGAAATATCCGGTACTCCCACTC 59.993 52.174 0.00 0.00 35.59 3.51
316 339 3.614568 AATATCCGGTACTCCCACTCT 57.385 47.619 0.00 0.00 0.00 3.24
317 340 3.614568 ATATCCGGTACTCCCACTCTT 57.385 47.619 0.00 0.00 0.00 2.85
318 341 4.736611 ATATCCGGTACTCCCACTCTTA 57.263 45.455 0.00 0.00 0.00 2.10
319 342 2.431954 TCCGGTACTCCCACTCTTAG 57.568 55.000 0.00 0.00 0.00 2.18
320 343 1.064166 TCCGGTACTCCCACTCTTAGG 60.064 57.143 0.00 0.00 0.00 2.69
322 345 1.341778 CGGTACTCCCACTCTTAGGGT 60.342 57.143 0.00 0.00 46.82 4.34
323 346 2.092212 CGGTACTCCCACTCTTAGGGTA 60.092 54.545 0.00 0.00 46.82 3.69
324 347 3.295093 GGTACTCCCACTCTTAGGGTAC 58.705 54.545 0.00 0.00 46.82 3.34
325 348 3.053019 GGTACTCCCACTCTTAGGGTACT 60.053 52.174 0.00 0.00 46.82 2.73
326 349 3.385314 ACTCCCACTCTTAGGGTACTC 57.615 52.381 0.00 0.00 46.82 2.59
327 350 2.024177 ACTCCCACTCTTAGGGTACTCC 60.024 54.545 0.00 0.00 46.82 3.85
336 359 2.582978 GGGTACTCCCGGTGCTTC 59.417 66.667 0.00 0.00 44.74 3.86
337 360 2.288025 GGGTACTCCCGGTGCTTCA 61.288 63.158 0.00 0.00 44.74 3.02
338 361 1.675219 GGTACTCCCGGTGCTTCAA 59.325 57.895 0.00 0.00 0.00 2.69
339 362 0.035739 GGTACTCCCGGTGCTTCAAA 59.964 55.000 0.00 0.00 0.00 2.69
340 363 1.543871 GGTACTCCCGGTGCTTCAAAA 60.544 52.381 0.00 0.00 0.00 2.44
341 364 1.534163 GTACTCCCGGTGCTTCAAAAC 59.466 52.381 0.00 0.00 0.00 2.43
342 365 0.182775 ACTCCCGGTGCTTCAAAACT 59.817 50.000 0.00 0.00 0.00 2.66
343 366 1.318576 CTCCCGGTGCTTCAAAACTT 58.681 50.000 0.00 0.00 0.00 2.66
344 367 1.001378 CTCCCGGTGCTTCAAAACTTG 60.001 52.381 0.00 0.00 0.00 3.16
345 368 0.031994 CCCGGTGCTTCAAAACTTGG 59.968 55.000 0.00 0.00 0.00 3.61
346 369 1.028905 CCGGTGCTTCAAAACTTGGA 58.971 50.000 0.00 0.00 0.00 3.53
347 370 1.407258 CCGGTGCTTCAAAACTTGGAA 59.593 47.619 0.00 0.00 0.00 3.53
348 371 2.543653 CCGGTGCTTCAAAACTTGGAAG 60.544 50.000 0.00 2.65 42.62 3.46
356 379 6.667007 CTTCAAAACTTGGAAGCACATTTT 57.333 33.333 0.00 0.00 34.69 1.82
357 380 7.075674 CTTCAAAACTTGGAAGCACATTTTT 57.924 32.000 0.00 0.00 34.69 1.94
358 381 8.195617 CTTCAAAACTTGGAAGCACATTTTTA 57.804 30.769 0.00 0.00 34.69 1.52
359 382 8.553459 TTCAAAACTTGGAAGCACATTTTTAA 57.447 26.923 0.00 0.00 0.00 1.52
360 383 8.553459 TCAAAACTTGGAAGCACATTTTTAAA 57.447 26.923 0.00 0.00 0.00 1.52
361 384 9.171877 TCAAAACTTGGAAGCACATTTTTAAAT 57.828 25.926 0.00 0.00 0.00 1.40
398 421 3.323751 AAAAATCCAGCACATTGAGGC 57.676 42.857 0.00 0.00 0.00 4.70
399 422 1.927487 AAATCCAGCACATTGAGGCA 58.073 45.000 7.57 0.00 0.00 4.75
400 423 1.927487 AATCCAGCACATTGAGGCAA 58.073 45.000 7.57 0.00 0.00 4.52
401 424 1.180029 ATCCAGCACATTGAGGCAAC 58.820 50.000 7.57 0.00 0.00 4.17
402 425 0.178995 TCCAGCACATTGAGGCAACA 60.179 50.000 7.57 0.00 41.41 3.33
403 426 0.892755 CCAGCACATTGAGGCAACAT 59.107 50.000 7.57 0.00 41.41 2.71
404 427 1.135199 CCAGCACATTGAGGCAACATC 60.135 52.381 7.57 0.00 41.41 3.06
405 428 1.542472 CAGCACATTGAGGCAACATCA 59.458 47.619 7.57 0.00 41.41 3.07
406 429 2.029739 CAGCACATTGAGGCAACATCAA 60.030 45.455 0.00 0.00 40.72 2.57
407 430 2.629137 AGCACATTGAGGCAACATCAAA 59.371 40.909 0.00 0.00 39.92 2.69
408 431 2.991190 GCACATTGAGGCAACATCAAAG 59.009 45.455 0.00 0.00 39.92 2.77
409 432 3.553508 GCACATTGAGGCAACATCAAAGT 60.554 43.478 0.00 0.00 39.92 2.66
410 433 4.321156 GCACATTGAGGCAACATCAAAGTA 60.321 41.667 3.05 0.00 39.92 2.24
411 434 5.622914 GCACATTGAGGCAACATCAAAGTAT 60.623 40.000 3.05 0.00 39.92 2.12
412 435 5.803461 CACATTGAGGCAACATCAAAGTATG 59.197 40.000 3.05 0.00 39.92 2.39
413 436 5.477984 ACATTGAGGCAACATCAAAGTATGT 59.522 36.000 1.58 0.00 41.87 2.29
414 437 6.015180 ACATTGAGGCAACATCAAAGTATGTT 60.015 34.615 1.58 0.00 42.01 2.71
415 438 5.375417 TGAGGCAACATCAAAGTATGTTG 57.625 39.130 20.12 20.12 42.01 3.33
416 439 4.826733 TGAGGCAACATCAAAGTATGTTGT 59.173 37.500 23.28 10.57 42.01 3.32
417 440 5.048782 TGAGGCAACATCAAAGTATGTTGTC 60.049 40.000 20.86 20.86 42.01 3.18
418 441 4.826733 AGGCAACATCAAAGTATGTTGTCA 59.173 37.500 26.73 0.00 42.01 3.58
419 442 5.301551 AGGCAACATCAAAGTATGTTGTCAA 59.698 36.000 26.73 0.00 42.01 3.18
420 443 5.982516 GGCAACATCAAAGTATGTTGTCAAA 59.017 36.000 22.57 0.00 42.01 2.69
421 444 6.478344 GGCAACATCAAAGTATGTTGTCAAAA 59.522 34.615 22.57 0.00 42.01 2.44
422 445 7.010923 GGCAACATCAAAGTATGTTGTCAAAAA 59.989 33.333 22.57 0.00 42.01 1.94
446 469 9.906660 AAAATTCGAAACATAGCTTATGAAACA 57.093 25.926 0.00 0.00 39.45 2.83
464 487 7.774224 TGAAACATAAATGACAAATTCGACG 57.226 32.000 0.00 0.00 0.00 5.12
465 488 6.799441 TGAAACATAAATGACAAATTCGACGG 59.201 34.615 0.00 0.00 0.00 4.79
466 489 5.873179 ACATAAATGACAAATTCGACGGT 57.127 34.783 0.00 0.00 0.00 4.83
467 490 6.971527 ACATAAATGACAAATTCGACGGTA 57.028 33.333 0.00 0.00 0.00 4.02
468 491 7.367159 ACATAAATGACAAATTCGACGGTAA 57.633 32.000 0.00 0.00 0.00 2.85
469 492 7.808672 ACATAAATGACAAATTCGACGGTAAA 58.191 30.769 0.00 0.00 0.00 2.01
470 493 8.455682 ACATAAATGACAAATTCGACGGTAAAT 58.544 29.630 0.00 0.00 0.00 1.40
471 494 9.923786 CATAAATGACAAATTCGACGGTAAATA 57.076 29.630 0.00 0.00 0.00 1.40
473 496 7.605410 AATGACAAATTCGACGGTAAATAGT 57.395 32.000 0.00 0.00 0.00 2.12
474 497 8.706492 AATGACAAATTCGACGGTAAATAGTA 57.294 30.769 0.00 0.00 0.00 1.82
475 498 7.510428 TGACAAATTCGACGGTAAATAGTAC 57.490 36.000 0.00 0.00 0.00 2.73
476 499 7.089538 TGACAAATTCGACGGTAAATAGTACA 58.910 34.615 0.00 0.00 0.00 2.90
477 500 7.062138 TGACAAATTCGACGGTAAATAGTACAC 59.938 37.037 0.00 0.00 0.00 2.90
478 501 6.867816 ACAAATTCGACGGTAAATAGTACACA 59.132 34.615 0.00 0.00 0.00 3.72
479 502 7.384660 ACAAATTCGACGGTAAATAGTACACAA 59.615 33.333 0.00 0.00 0.00 3.33
480 503 6.875926 ATTCGACGGTAAATAGTACACAAC 57.124 37.500 0.00 0.00 0.00 3.32
481 504 5.369685 TCGACGGTAAATAGTACACAACA 57.630 39.130 0.00 0.00 0.00 3.33
482 505 5.953183 TCGACGGTAAATAGTACACAACAT 58.047 37.500 0.00 0.00 0.00 2.71
483 506 7.082700 TCGACGGTAAATAGTACACAACATA 57.917 36.000 0.00 0.00 0.00 2.29
484 507 7.534282 TCGACGGTAAATAGTACACAACATAA 58.466 34.615 0.00 0.00 0.00 1.90
485 508 7.697710 TCGACGGTAAATAGTACACAACATAAG 59.302 37.037 0.00 0.00 0.00 1.73
486 509 7.485913 CGACGGTAAATAGTACACAACATAAGT 59.514 37.037 0.00 0.00 0.00 2.24
487 510 9.143631 GACGGTAAATAGTACACAACATAAGTT 57.856 33.333 0.00 0.00 38.88 2.66
503 526 7.625828 ACATAAGTTGGACTTTACATTAGGC 57.374 36.000 0.00 0.00 39.51 3.93
504 527 6.602009 ACATAAGTTGGACTTTACATTAGGCC 59.398 38.462 0.00 0.00 41.52 5.19
505 528 3.964411 AGTTGGACTTTACATTAGGCCC 58.036 45.455 0.00 0.00 40.33 5.80
506 529 3.332485 AGTTGGACTTTACATTAGGCCCA 59.668 43.478 0.00 0.00 40.33 5.36
507 530 4.017499 AGTTGGACTTTACATTAGGCCCAT 60.017 41.667 0.00 0.00 40.33 4.00
508 531 4.601406 TGGACTTTACATTAGGCCCATT 57.399 40.909 0.00 0.00 40.33 3.16
509 532 5.718801 TGGACTTTACATTAGGCCCATTA 57.281 39.130 0.00 0.00 40.33 1.90
510 533 6.274322 TGGACTTTACATTAGGCCCATTAT 57.726 37.500 0.00 0.00 40.33 1.28
511 534 6.303839 TGGACTTTACATTAGGCCCATTATC 58.696 40.000 0.00 0.00 40.33 1.75
512 535 6.126332 TGGACTTTACATTAGGCCCATTATCA 60.126 38.462 0.00 0.00 40.33 2.15
513 536 6.206829 GGACTTTACATTAGGCCCATTATCAC 59.793 42.308 0.00 0.00 34.49 3.06
514 537 6.668645 ACTTTACATTAGGCCCATTATCACA 58.331 36.000 0.00 0.00 0.00 3.58
515 538 7.297614 ACTTTACATTAGGCCCATTATCACAT 58.702 34.615 0.00 0.00 0.00 3.21
516 539 7.784550 ACTTTACATTAGGCCCATTATCACATT 59.215 33.333 0.00 0.00 0.00 2.71
517 540 7.523293 TTACATTAGGCCCATTATCACATTG 57.477 36.000 0.00 0.00 0.00 2.82
518 541 5.704354 ACATTAGGCCCATTATCACATTGA 58.296 37.500 0.00 0.00 0.00 2.57
519 542 6.317312 ACATTAGGCCCATTATCACATTGAT 58.683 36.000 0.00 0.00 40.72 2.57
520 543 6.209986 ACATTAGGCCCATTATCACATTGATG 59.790 38.462 0.00 0.00 37.70 3.07
521 544 4.188937 AGGCCCATTATCACATTGATGT 57.811 40.909 0.00 0.00 42.84 3.06
522 545 4.147321 AGGCCCATTATCACATTGATGTC 58.853 43.478 0.00 0.00 39.39 3.06
523 546 4.141088 AGGCCCATTATCACATTGATGTCT 60.141 41.667 0.00 0.00 39.39 3.41
524 547 5.073554 AGGCCCATTATCACATTGATGTCTA 59.926 40.000 0.00 0.00 39.39 2.59
525 548 5.948162 GGCCCATTATCACATTGATGTCTAT 59.052 40.000 0.00 0.00 39.39 1.98
526 549 6.435277 GGCCCATTATCACATTGATGTCTATT 59.565 38.462 0.00 0.00 39.39 1.73
527 550 7.039504 GGCCCATTATCACATTGATGTCTATTT 60.040 37.037 0.00 0.00 39.39 1.40
528 551 8.362639 GCCCATTATCACATTGATGTCTATTTT 58.637 33.333 0.00 0.00 39.39 1.82
529 552 9.687210 CCCATTATCACATTGATGTCTATTTTG 57.313 33.333 0.00 0.00 39.39 2.44
548 571 9.214953 CTATTTTGTCATTTTTGTATCTCGAGC 57.785 33.333 7.81 0.00 0.00 5.03
549 572 6.552859 TTTGTCATTTTTGTATCTCGAGCA 57.447 33.333 7.81 0.00 0.00 4.26
550 573 6.552859 TTGTCATTTTTGTATCTCGAGCAA 57.447 33.333 7.81 3.53 0.00 3.91
551 574 6.741992 TGTCATTTTTGTATCTCGAGCAAT 57.258 33.333 7.81 0.00 0.00 3.56
552 575 7.144722 TGTCATTTTTGTATCTCGAGCAATT 57.855 32.000 7.81 0.00 0.00 2.32
553 576 7.592938 TGTCATTTTTGTATCTCGAGCAATTT 58.407 30.769 7.81 0.00 0.00 1.82
554 577 8.081633 TGTCATTTTTGTATCTCGAGCAATTTT 58.918 29.630 7.81 0.00 0.00 1.82
555 578 8.915654 GTCATTTTTGTATCTCGAGCAATTTTT 58.084 29.630 7.81 0.00 0.00 1.94
610 633 4.859304 ATTGATGTTGTGTCAATGTGCT 57.141 36.364 0.95 0.00 42.87 4.40
611 634 3.629438 TGATGTTGTGTCAATGTGCTG 57.371 42.857 0.00 0.00 0.00 4.41
612 635 2.293955 TGATGTTGTGTCAATGTGCTGG 59.706 45.455 0.00 0.00 0.00 4.85
613 636 2.049888 TGTTGTGTCAATGTGCTGGA 57.950 45.000 0.00 0.00 0.00 3.86
614 637 2.585330 TGTTGTGTCAATGTGCTGGAT 58.415 42.857 0.00 0.00 0.00 3.41
615 638 2.957680 TGTTGTGTCAATGTGCTGGATT 59.042 40.909 0.00 0.00 0.00 3.01
616 639 3.384146 TGTTGTGTCAATGTGCTGGATTT 59.616 39.130 0.00 0.00 0.00 2.17
617 640 4.141981 TGTTGTGTCAATGTGCTGGATTTT 60.142 37.500 0.00 0.00 0.00 1.82
618 641 4.669206 TGTGTCAATGTGCTGGATTTTT 57.331 36.364 0.00 0.00 0.00 1.94
666 689 7.448748 AATGTGTTATCAAGTTTGGAGTACC 57.551 36.000 0.00 0.00 0.00 3.34
667 690 4.992319 TGTGTTATCAAGTTTGGAGTACCG 59.008 41.667 0.00 0.00 39.42 4.02
668 691 4.390909 GTGTTATCAAGTTTGGAGTACCGG 59.609 45.833 0.00 0.00 39.42 5.28
669 692 2.781681 ATCAAGTTTGGAGTACCGGG 57.218 50.000 6.32 0.00 39.42 5.73
670 693 1.719529 TCAAGTTTGGAGTACCGGGA 58.280 50.000 6.32 0.00 39.42 5.14
671 694 1.621814 TCAAGTTTGGAGTACCGGGAG 59.378 52.381 6.32 0.00 39.42 4.30
672 695 0.323957 AAGTTTGGAGTACCGGGAGC 59.676 55.000 6.32 0.00 39.42 4.70
673 696 0.834687 AGTTTGGAGTACCGGGAGCA 60.835 55.000 6.32 0.00 39.42 4.26
674 697 0.672711 GTTTGGAGTACCGGGAGCAC 60.673 60.000 6.32 0.00 39.42 4.40
675 698 1.833787 TTTGGAGTACCGGGAGCACC 61.834 60.000 6.32 0.95 39.42 5.01
685 708 2.832498 GGAGCACCCTAGGGATGC 59.168 66.667 35.38 33.27 40.24 3.91
686 709 2.423446 GAGCACCCTAGGGATGCG 59.577 66.667 35.38 19.11 42.68 4.73
687 710 2.041922 AGCACCCTAGGGATGCGA 60.042 61.111 35.38 0.00 42.68 5.10
688 711 2.093537 GAGCACCCTAGGGATGCGAG 62.094 65.000 35.38 16.11 42.68 5.03
689 712 2.435693 GCACCCTAGGGATGCGAGT 61.436 63.158 35.38 6.95 38.96 4.18
690 713 1.113517 GCACCCTAGGGATGCGAGTA 61.114 60.000 35.38 0.00 38.96 2.59
691 714 0.674534 CACCCTAGGGATGCGAGTAC 59.325 60.000 35.38 0.00 38.96 2.73
692 715 0.469518 ACCCTAGGGATGCGAGTACC 60.470 60.000 35.38 0.00 38.96 3.34
693 716 0.469331 CCCTAGGGATGCGAGTACCA 60.469 60.000 24.99 0.00 37.50 3.25
694 717 0.962489 CCTAGGGATGCGAGTACCAG 59.038 60.000 0.00 0.00 0.00 4.00
695 718 1.478837 CCTAGGGATGCGAGTACCAGA 60.479 57.143 0.00 0.00 0.00 3.86
696 719 2.520069 CTAGGGATGCGAGTACCAGAT 58.480 52.381 0.00 0.00 0.00 2.90
697 720 2.677542 AGGGATGCGAGTACCAGATA 57.322 50.000 0.00 0.00 0.00 1.98
698 721 3.176924 AGGGATGCGAGTACCAGATAT 57.823 47.619 0.00 0.00 0.00 1.63
699 722 3.511477 AGGGATGCGAGTACCAGATATT 58.489 45.455 0.00 0.00 0.00 1.28
700 723 3.904339 AGGGATGCGAGTACCAGATATTT 59.096 43.478 0.00 0.00 0.00 1.40
701 724 4.021016 AGGGATGCGAGTACCAGATATTTC 60.021 45.833 0.00 0.00 0.00 2.17
702 725 4.246458 GGATGCGAGTACCAGATATTTCC 58.754 47.826 0.00 0.00 0.00 3.13
703 726 3.746045 TGCGAGTACCAGATATTTCCC 57.254 47.619 0.00 0.00 0.00 3.97
704 727 2.367567 TGCGAGTACCAGATATTTCCCC 59.632 50.000 0.00 0.00 0.00 4.81
859 892 8.088981 CCTAATAACAGTAGGATTCGCTAACAT 58.911 37.037 0.00 0.00 40.67 2.71
938 971 1.209261 TCGAACTTGGCCAGATGCATA 59.791 47.619 5.11 0.00 43.89 3.14
939 972 2.158769 TCGAACTTGGCCAGATGCATAT 60.159 45.455 5.11 0.00 43.89 1.78
959 994 0.538516 GCTCTCCGCCTCCTCATCTA 60.539 60.000 0.00 0.00 0.00 1.98
1035 1070 2.454538 CCCAAGTACCTTCTCTACGGT 58.545 52.381 0.00 0.00 37.31 4.83
1117 1152 1.476007 CCTCTTCTCCTATGGGCCCG 61.476 65.000 19.37 1.86 0.00 6.13
1302 1340 0.179215 CGCGGTTCAATGTTCTCAGC 60.179 55.000 0.00 0.00 0.00 4.26
1368 1406 0.685458 GCTCCCTCATGGCCAATGTT 60.685 55.000 10.96 0.00 37.56 2.71
1439 1477 1.377202 CCGGTGTCATCCCCAACAG 60.377 63.158 0.00 0.00 0.00 3.16
1453 1494 1.134521 CCAACAGCGGATGGTAAGCTA 60.135 52.381 4.95 0.00 39.48 3.32
1455 1496 0.105039 ACAGCGGATGGTAAGCTAGC 59.895 55.000 6.62 6.62 39.48 3.42
1493 1541 3.001406 GAGTAGGCCGGTGTGGGT 61.001 66.667 1.90 0.00 38.63 4.51
1531 1579 4.703897 TGGTGCTTATACATGAGTTAGCC 58.296 43.478 0.00 0.00 0.00 3.93
1532 1580 4.163268 TGGTGCTTATACATGAGTTAGCCA 59.837 41.667 0.00 0.00 0.00 4.75
1533 1581 5.123227 GGTGCTTATACATGAGTTAGCCAA 58.877 41.667 0.00 0.00 0.00 4.52
1534 1582 5.237344 GGTGCTTATACATGAGTTAGCCAAG 59.763 44.000 0.00 0.00 0.00 3.61
1548 1596 0.378610 GCCAAGGCGTCTAAGAATGC 59.621 55.000 0.00 0.00 0.00 3.56
1843 1891 1.971695 GTTCCGGCACAAAGAGGGG 60.972 63.158 0.00 0.00 0.00 4.79
2422 2470 2.572284 GACCCCGACGAACTCCTG 59.428 66.667 0.00 0.00 0.00 3.86
2662 2710 1.170442 CTGCTGATGTGATGGTTGCA 58.830 50.000 0.00 0.00 0.00 4.08
2680 2728 1.677217 GCAAAGGGCTCCTGACACTAG 60.677 57.143 0.00 0.00 40.25 2.57
2681 2729 0.615850 AAAGGGCTCCTGACACTAGC 59.384 55.000 0.00 0.00 32.13 3.42
2682 2730 0.252467 AAGGGCTCCTGACACTAGCT 60.252 55.000 0.00 0.00 36.48 3.32
2683 2731 0.631753 AGGGCTCCTGACACTAGCTA 59.368 55.000 0.00 0.00 36.48 3.32
2684 2732 1.007238 AGGGCTCCTGACACTAGCTAA 59.993 52.381 0.00 0.00 36.48 3.09
2685 2733 2.043227 GGGCTCCTGACACTAGCTAAT 58.957 52.381 0.00 0.00 36.48 1.73
2686 2734 2.436173 GGGCTCCTGACACTAGCTAATT 59.564 50.000 0.00 0.00 36.48 1.40
2687 2735 3.641906 GGGCTCCTGACACTAGCTAATTA 59.358 47.826 0.00 0.00 36.48 1.40
2718 2766 1.323412 ACGTAGGTGGCATTTTTGCA 58.677 45.000 0.00 0.00 36.33 4.08
2796 2849 5.661056 TGATGTCCGTCTAATTCTCAGTT 57.339 39.130 0.00 0.00 0.00 3.16
2797 2850 5.410924 TGATGTCCGTCTAATTCTCAGTTG 58.589 41.667 0.00 0.00 0.00 3.16
2836 2889 3.548668 CACTTCGTACAGTCGTTGTTTCA 59.451 43.478 0.00 0.00 41.29 2.69
2840 2893 5.361135 TCGTACAGTCGTTGTTTCATCTA 57.639 39.130 0.00 0.00 41.29 1.98
2898 2953 2.203139 CCAACTCACCCACACGCA 60.203 61.111 0.00 0.00 0.00 5.24
2944 2999 5.233225 TGCACGAATTTTGGCATGAATTAA 58.767 33.333 0.00 0.00 0.00 1.40
2977 3033 0.166597 CACGTAGGACAACTCGCGTA 59.833 55.000 5.77 0.00 38.35 4.42
3028 3086 1.420532 TTTTACCACACGGAGGGGCT 61.421 55.000 0.00 0.00 35.59 5.19
3155 3213 2.620112 CCCAAGCTGTCAGTTGCCG 61.620 63.158 0.93 0.00 0.00 5.69
3158 3216 1.153168 AAGCTGTCAGTTGCCGTGT 60.153 52.632 0.93 0.00 0.00 4.49
3183 3241 1.238439 GCAGTGTACATGGCAACTGT 58.762 50.000 19.04 8.31 37.61 3.55
3185 3243 2.493035 CAGTGTACATGGCAACTGTCA 58.507 47.619 0.00 0.00 37.61 3.58
3543 3607 3.569701 TCTGGAACTTTGACCTGAAATGC 59.430 43.478 0.00 0.00 32.71 3.56
3642 3706 1.604604 AACGAACATGGACAAGGGTG 58.395 50.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.591170 GCACCTGCGCTGAGTAAAAA 59.409 50.000 16.65 0.00 0.00 1.94
24 25 0.533978 TGCACCTGCGCTGAGTAAAA 60.534 50.000 16.65 0.00 45.83 1.52
25 26 0.950555 CTGCACCTGCGCTGAGTAAA 60.951 55.000 16.65 3.39 45.83 2.01
26 27 1.374631 CTGCACCTGCGCTGAGTAA 60.375 57.895 16.65 3.70 45.83 2.24
27 28 1.607801 ATCTGCACCTGCGCTGAGTA 61.608 55.000 16.65 6.59 45.83 2.59
28 29 2.952293 ATCTGCACCTGCGCTGAGT 61.952 57.895 16.65 9.07 45.83 3.41
29 30 2.125229 ATCTGCACCTGCGCTGAG 60.125 61.111 16.65 8.95 45.83 3.35
30 31 2.248086 ATCATCTGCACCTGCGCTGA 62.248 55.000 16.65 4.11 45.83 4.26
31 32 1.773054 GATCATCTGCACCTGCGCTG 61.773 60.000 9.73 8.47 45.83 5.18
32 33 1.523258 GATCATCTGCACCTGCGCT 60.523 57.895 9.73 0.00 45.83 5.92
33 34 2.541120 GGATCATCTGCACCTGCGC 61.541 63.158 0.00 0.00 45.83 6.09
34 35 1.145598 AGGATCATCTGCACCTGCG 59.854 57.895 0.00 0.00 45.83 5.18
35 36 0.179702 TCAGGATCATCTGCACCTGC 59.820 55.000 12.72 0.00 46.36 4.85
37 38 1.485480 CACTCAGGATCATCTGCACCT 59.515 52.381 0.00 0.00 34.91 4.00
38 39 1.950828 CACTCAGGATCATCTGCACC 58.049 55.000 0.00 0.00 34.91 5.01
39 40 1.297664 GCACTCAGGATCATCTGCAC 58.702 55.000 0.00 0.00 34.91 4.57
40 41 0.179702 GGCACTCAGGATCATCTGCA 59.820 55.000 0.00 0.00 34.91 4.41
41 42 0.179702 TGGCACTCAGGATCATCTGC 59.820 55.000 0.00 0.00 34.91 4.26
42 43 2.704464 TTGGCACTCAGGATCATCTG 57.296 50.000 0.00 0.00 36.17 2.90
43 44 3.350833 GTTTTGGCACTCAGGATCATCT 58.649 45.455 0.00 0.00 0.00 2.90
44 45 2.096496 CGTTTTGGCACTCAGGATCATC 59.904 50.000 0.00 0.00 0.00 2.92
45 46 2.086869 CGTTTTGGCACTCAGGATCAT 58.913 47.619 0.00 0.00 0.00 2.45
46 47 1.522668 CGTTTTGGCACTCAGGATCA 58.477 50.000 0.00 0.00 0.00 2.92
47 48 0.169009 GCGTTTTGGCACTCAGGATC 59.831 55.000 0.00 0.00 0.00 3.36
48 49 1.244019 GGCGTTTTGGCACTCAGGAT 61.244 55.000 0.00 0.00 44.08 3.24
49 50 1.896660 GGCGTTTTGGCACTCAGGA 60.897 57.895 0.00 0.00 44.08 3.86
50 51 2.644992 GGCGTTTTGGCACTCAGG 59.355 61.111 0.00 0.00 44.08 3.86
57 58 1.166531 ACAGAGTGAGGCGTTTTGGC 61.167 55.000 0.00 0.00 45.27 4.52
58 59 2.163818 TACAGAGTGAGGCGTTTTGG 57.836 50.000 0.00 0.00 0.00 3.28
59 60 7.224753 ACAATATATACAGAGTGAGGCGTTTTG 59.775 37.037 0.00 0.00 0.00 2.44
60 61 7.272978 ACAATATATACAGAGTGAGGCGTTTT 58.727 34.615 0.00 0.00 0.00 2.43
61 62 6.817184 ACAATATATACAGAGTGAGGCGTTT 58.183 36.000 0.00 0.00 0.00 3.60
62 63 6.406692 ACAATATATACAGAGTGAGGCGTT 57.593 37.500 0.00 0.00 0.00 4.84
63 64 5.047943 GGACAATATATACAGAGTGAGGCGT 60.048 44.000 0.00 0.00 0.00 5.68
64 65 5.048013 TGGACAATATATACAGAGTGAGGCG 60.048 44.000 0.00 0.00 0.00 5.52
65 66 6.346477 TGGACAATATATACAGAGTGAGGC 57.654 41.667 0.00 0.00 0.00 4.70
66 67 6.815641 GCATGGACAATATATACAGAGTGAGG 59.184 42.308 0.00 0.00 0.00 3.86
67 68 6.815641 GGCATGGACAATATATACAGAGTGAG 59.184 42.308 0.00 0.00 0.00 3.51
68 69 6.269769 TGGCATGGACAATATATACAGAGTGA 59.730 38.462 0.00 0.00 0.00 3.41
69 70 6.466812 TGGCATGGACAATATATACAGAGTG 58.533 40.000 0.00 0.00 0.00 3.51
70 71 6.686484 TGGCATGGACAATATATACAGAGT 57.314 37.500 0.00 0.00 0.00 3.24
71 72 6.478016 CGATGGCATGGACAATATATACAGAG 59.522 42.308 3.81 0.00 0.00 3.35
72 73 6.154363 TCGATGGCATGGACAATATATACAGA 59.846 38.462 3.81 0.00 0.00 3.41
73 74 6.256539 GTCGATGGCATGGACAATATATACAG 59.743 42.308 30.13 0.27 37.84 2.74
74 75 6.106003 GTCGATGGCATGGACAATATATACA 58.894 40.000 30.13 0.00 37.84 2.29
75 76 5.523916 GGTCGATGGCATGGACAATATATAC 59.476 44.000 33.68 16.65 39.43 1.47
76 77 5.188751 TGGTCGATGGCATGGACAATATATA 59.811 40.000 33.68 14.47 39.43 0.86
77 78 4.019411 TGGTCGATGGCATGGACAATATAT 60.019 41.667 33.68 0.00 39.43 0.86
78 79 3.326297 TGGTCGATGGCATGGACAATATA 59.674 43.478 33.68 17.20 39.43 0.86
79 80 2.106338 TGGTCGATGGCATGGACAATAT 59.894 45.455 33.68 0.00 39.43 1.28
80 81 1.488393 TGGTCGATGGCATGGACAATA 59.512 47.619 33.68 21.12 39.43 1.90
111 112 3.146066 TCCTGCTAAAACGCTTGTCATT 58.854 40.909 0.00 0.00 0.00 2.57
112 113 2.778299 TCCTGCTAAAACGCTTGTCAT 58.222 42.857 0.00 0.00 0.00 3.06
135 136 1.134560 CCTAGCCAGGTCACGTAACTC 59.865 57.143 0.00 0.00 37.15 3.01
175 198 9.499479 GTAGTTCCTGCTACAGTATATAGTGTA 57.501 37.037 23.11 23.11 40.61 2.90
177 200 8.392372 TGTAGTTCCTGCTACAGTATATAGTG 57.608 38.462 14.83 14.83 44.27 2.74
191 214 4.672587 TGTCCTCATATGTAGTTCCTGC 57.327 45.455 1.90 0.00 0.00 4.85
269 292 1.999735 CAGCACCCATACGTGTACTTG 59.000 52.381 0.00 0.00 36.08 3.16
270 293 1.674817 GCAGCACCCATACGTGTACTT 60.675 52.381 0.00 0.00 36.08 2.24
281 304 1.932156 ATATTTCCCCGCAGCACCCA 61.932 55.000 0.00 0.00 0.00 4.51
282 305 1.152756 ATATTTCCCCGCAGCACCC 60.153 57.895 0.00 0.00 0.00 4.61
283 306 1.172812 GGATATTTCCCCGCAGCACC 61.173 60.000 0.00 0.00 35.84 5.01
284 307 1.507141 CGGATATTTCCCCGCAGCAC 61.507 60.000 0.00 0.00 39.01 4.40
285 308 1.227823 CGGATATTTCCCCGCAGCA 60.228 57.895 0.00 0.00 39.01 4.41
286 309 1.966451 CCGGATATTTCCCCGCAGC 60.966 63.158 0.00 0.00 44.07 5.25
287 310 0.682852 TACCGGATATTTCCCCGCAG 59.317 55.000 9.46 0.00 44.07 5.18
288 311 0.393820 GTACCGGATATTTCCCCGCA 59.606 55.000 9.46 0.00 44.07 5.69
289 312 0.683412 AGTACCGGATATTTCCCCGC 59.317 55.000 9.46 0.00 44.07 6.13
290 313 1.274447 GGAGTACCGGATATTTCCCCG 59.726 57.143 9.46 0.00 44.94 5.73
291 314 1.627329 GGGAGTACCGGATATTTCCCC 59.373 57.143 9.46 5.31 39.01 4.81
292 315 2.038164 GTGGGAGTACCGGATATTTCCC 59.962 54.545 9.46 16.89 44.64 3.97
293 316 2.970640 AGTGGGAGTACCGGATATTTCC 59.029 50.000 9.46 7.58 44.64 3.13
294 317 3.896272 AGAGTGGGAGTACCGGATATTTC 59.104 47.826 9.46 0.00 44.64 2.17
295 318 3.924922 AGAGTGGGAGTACCGGATATTT 58.075 45.455 9.46 0.00 44.64 1.40
296 319 3.614568 AGAGTGGGAGTACCGGATATT 57.385 47.619 9.46 0.00 44.64 1.28
297 320 3.614568 AAGAGTGGGAGTACCGGATAT 57.385 47.619 9.46 0.00 44.64 1.63
298 321 3.181436 CCTAAGAGTGGGAGTACCGGATA 60.181 52.174 9.46 0.00 44.64 2.59
299 322 2.424523 CCTAAGAGTGGGAGTACCGGAT 60.425 54.545 9.46 0.00 44.64 4.18
300 323 1.064166 CCTAAGAGTGGGAGTACCGGA 60.064 57.143 9.46 0.00 44.64 5.14
301 324 1.400737 CCTAAGAGTGGGAGTACCGG 58.599 60.000 0.00 0.00 44.64 5.28
320 343 0.035739 TTTGAAGCACCGGGAGTACC 59.964 55.000 6.32 0.00 0.00 3.34
321 344 1.534163 GTTTTGAAGCACCGGGAGTAC 59.466 52.381 6.32 0.00 0.00 2.73
322 345 1.418637 AGTTTTGAAGCACCGGGAGTA 59.581 47.619 6.32 0.00 0.00 2.59
323 346 0.182775 AGTTTTGAAGCACCGGGAGT 59.817 50.000 6.32 0.00 0.00 3.85
324 347 1.001378 CAAGTTTTGAAGCACCGGGAG 60.001 52.381 6.32 0.00 0.00 4.30
325 348 1.028905 CAAGTTTTGAAGCACCGGGA 58.971 50.000 6.32 0.00 0.00 5.14
326 349 0.031994 CCAAGTTTTGAAGCACCGGG 59.968 55.000 6.32 0.00 0.00 5.73
327 350 1.028905 TCCAAGTTTTGAAGCACCGG 58.971 50.000 0.00 0.00 0.00 5.28
328 351 2.731217 CTTCCAAGTTTTGAAGCACCG 58.269 47.619 0.27 0.00 0.00 4.94
329 352 2.473816 GCTTCCAAGTTTTGAAGCACC 58.526 47.619 22.93 3.47 46.43 5.01
333 356 6.667007 AAAATGTGCTTCCAAGTTTTGAAG 57.333 33.333 7.31 7.31 0.00 3.02
334 357 8.553459 TTAAAAATGTGCTTCCAAGTTTTGAA 57.447 26.923 0.00 0.00 0.00 2.69
335 358 8.553459 TTTAAAAATGTGCTTCCAAGTTTTGA 57.447 26.923 0.00 0.00 0.00 2.69
336 359 9.224058 CATTTAAAAATGTGCTTCCAAGTTTTG 57.776 29.630 7.18 0.00 40.61 2.44
378 401 2.633967 TGCCTCAATGTGCTGGATTTTT 59.366 40.909 0.00 0.00 0.00 1.94
379 402 2.250031 TGCCTCAATGTGCTGGATTTT 58.750 42.857 0.00 0.00 0.00 1.82
380 403 1.927487 TGCCTCAATGTGCTGGATTT 58.073 45.000 0.00 0.00 0.00 2.17
381 404 1.547372 GTTGCCTCAATGTGCTGGATT 59.453 47.619 0.00 0.00 0.00 3.01
382 405 1.180029 GTTGCCTCAATGTGCTGGAT 58.820 50.000 0.00 0.00 0.00 3.41
383 406 0.178995 TGTTGCCTCAATGTGCTGGA 60.179 50.000 0.00 0.00 0.00 3.86
384 407 0.892755 ATGTTGCCTCAATGTGCTGG 59.107 50.000 0.00 0.00 0.00 4.85
385 408 1.542472 TGATGTTGCCTCAATGTGCTG 59.458 47.619 0.00 0.00 0.00 4.41
386 409 1.913778 TGATGTTGCCTCAATGTGCT 58.086 45.000 0.00 0.00 0.00 4.40
387 410 2.728690 TTGATGTTGCCTCAATGTGC 57.271 45.000 0.00 0.00 0.00 4.57
388 411 4.247267 ACTTTGATGTTGCCTCAATGTG 57.753 40.909 4.41 0.00 38.69 3.21
389 412 5.477984 ACATACTTTGATGTTGCCTCAATGT 59.522 36.000 8.85 8.85 41.28 2.71
390 413 5.957798 ACATACTTTGATGTTGCCTCAATG 58.042 37.500 0.00 0.00 36.64 2.82
391 414 6.594788 AACATACTTTGATGTTGCCTCAAT 57.405 33.333 1.14 0.00 46.00 2.57
420 443 9.906660 TGTTTCATAAGCTATGTTTCGAATTTT 57.093 25.926 0.00 0.00 37.45 1.82
438 461 9.484326 CGTCGAATTTGTCATTTATGTTTCATA 57.516 29.630 0.00 0.00 0.00 2.15
439 462 7.484641 CCGTCGAATTTGTCATTTATGTTTCAT 59.515 33.333 0.00 0.00 0.00 2.57
440 463 6.799441 CCGTCGAATTTGTCATTTATGTTTCA 59.201 34.615 0.00 0.00 0.00 2.69
441 464 6.799925 ACCGTCGAATTTGTCATTTATGTTTC 59.200 34.615 0.00 0.00 0.00 2.78
442 465 6.674066 ACCGTCGAATTTGTCATTTATGTTT 58.326 32.000 0.00 0.00 0.00 2.83
443 466 6.249035 ACCGTCGAATTTGTCATTTATGTT 57.751 33.333 0.00 0.00 0.00 2.71
444 467 5.873179 ACCGTCGAATTTGTCATTTATGT 57.127 34.783 0.00 0.00 0.00 2.29
445 468 8.835467 ATTTACCGTCGAATTTGTCATTTATG 57.165 30.769 0.00 0.00 0.00 1.90
447 470 9.153721 ACTATTTACCGTCGAATTTGTCATTTA 57.846 29.630 0.00 0.00 0.00 1.40
448 471 8.036273 ACTATTTACCGTCGAATTTGTCATTT 57.964 30.769 0.00 0.00 0.00 2.32
449 472 7.605410 ACTATTTACCGTCGAATTTGTCATT 57.395 32.000 0.00 0.00 0.00 2.57
450 473 7.760794 TGTACTATTTACCGTCGAATTTGTCAT 59.239 33.333 0.00 0.00 0.00 3.06
451 474 7.062138 GTGTACTATTTACCGTCGAATTTGTCA 59.938 37.037 0.00 0.00 0.00 3.58
452 475 7.062138 TGTGTACTATTTACCGTCGAATTTGTC 59.938 37.037 0.00 0.00 0.00 3.18
453 476 6.867816 TGTGTACTATTTACCGTCGAATTTGT 59.132 34.615 0.00 0.00 0.00 2.83
454 477 7.280730 TGTGTACTATTTACCGTCGAATTTG 57.719 36.000 0.00 0.00 0.00 2.32
455 478 7.384660 TGTTGTGTACTATTTACCGTCGAATTT 59.615 33.333 0.00 0.00 0.00 1.82
456 479 6.867816 TGTTGTGTACTATTTACCGTCGAATT 59.132 34.615 0.00 0.00 0.00 2.17
457 480 6.389091 TGTTGTGTACTATTTACCGTCGAAT 58.611 36.000 0.00 0.00 0.00 3.34
458 481 5.767269 TGTTGTGTACTATTTACCGTCGAA 58.233 37.500 0.00 0.00 0.00 3.71
459 482 5.369685 TGTTGTGTACTATTTACCGTCGA 57.630 39.130 0.00 0.00 0.00 4.20
460 483 7.485913 ACTTATGTTGTGTACTATTTACCGTCG 59.514 37.037 0.00 0.00 0.00 5.12
461 484 8.693542 ACTTATGTTGTGTACTATTTACCGTC 57.306 34.615 0.00 0.00 0.00 4.79
462 485 8.928733 CAACTTATGTTGTGTACTATTTACCGT 58.071 33.333 12.21 0.00 46.08 4.83
478 501 7.122204 GGCCTAATGTAAAGTCCAACTTATGTT 59.878 37.037 0.00 0.00 37.47 2.71
479 502 6.602009 GGCCTAATGTAAAGTCCAACTTATGT 59.398 38.462 0.00 0.00 37.47 2.29
480 503 6.039382 GGGCCTAATGTAAAGTCCAACTTATG 59.961 42.308 0.84 0.00 37.47 1.90
481 504 6.127101 GGGCCTAATGTAAAGTCCAACTTAT 58.873 40.000 0.84 0.00 37.47 1.73
482 505 5.014333 TGGGCCTAATGTAAAGTCCAACTTA 59.986 40.000 4.53 0.00 37.47 2.24
483 506 4.202631 TGGGCCTAATGTAAAGTCCAACTT 60.203 41.667 4.53 0.00 40.80 2.66
484 507 3.332485 TGGGCCTAATGTAAAGTCCAACT 59.668 43.478 4.53 0.00 0.00 3.16
485 508 3.692690 TGGGCCTAATGTAAAGTCCAAC 58.307 45.455 4.53 0.00 0.00 3.77
486 509 4.601406 ATGGGCCTAATGTAAAGTCCAA 57.399 40.909 4.53 0.00 0.00 3.53
487 510 4.601406 AATGGGCCTAATGTAAAGTCCA 57.399 40.909 4.53 0.00 0.00 4.02
488 511 6.206829 GTGATAATGGGCCTAATGTAAAGTCC 59.793 42.308 4.53 0.00 0.00 3.85
489 512 6.770785 TGTGATAATGGGCCTAATGTAAAGTC 59.229 38.462 4.53 0.00 0.00 3.01
490 513 6.668645 TGTGATAATGGGCCTAATGTAAAGT 58.331 36.000 4.53 0.00 0.00 2.66
491 514 7.765695 ATGTGATAATGGGCCTAATGTAAAG 57.234 36.000 4.53 0.00 0.00 1.85
492 515 7.782168 TCAATGTGATAATGGGCCTAATGTAAA 59.218 33.333 4.53 0.00 0.00 2.01
493 516 7.293828 TCAATGTGATAATGGGCCTAATGTAA 58.706 34.615 4.53 0.00 0.00 2.41
494 517 6.846988 TCAATGTGATAATGGGCCTAATGTA 58.153 36.000 4.53 0.00 0.00 2.29
495 518 5.704354 TCAATGTGATAATGGGCCTAATGT 58.296 37.500 4.53 0.00 0.00 2.71
496 519 6.209986 ACATCAATGTGATAATGGGCCTAATG 59.790 38.462 4.53 0.00 40.03 1.90
497 520 6.317312 ACATCAATGTGATAATGGGCCTAAT 58.683 36.000 4.53 0.00 40.03 1.73
498 521 5.704354 ACATCAATGTGATAATGGGCCTAA 58.296 37.500 4.53 0.00 40.03 2.69
499 522 5.073554 AGACATCAATGTGATAATGGGCCTA 59.926 40.000 4.53 0.00 41.95 3.93
500 523 4.141088 AGACATCAATGTGATAATGGGCCT 60.141 41.667 4.53 0.00 41.95 5.19
501 524 4.147321 AGACATCAATGTGATAATGGGCC 58.853 43.478 0.00 0.00 41.95 5.80
502 525 7.458409 AATAGACATCAATGTGATAATGGGC 57.542 36.000 0.00 0.00 41.95 5.36
503 526 9.687210 CAAAATAGACATCAATGTGATAATGGG 57.313 33.333 0.00 0.00 41.95 4.00
522 545 9.214953 GCTCGAGATACAAAAATGACAAAATAG 57.785 33.333 18.75 0.00 0.00 1.73
523 546 8.726068 TGCTCGAGATACAAAAATGACAAAATA 58.274 29.630 18.75 0.00 0.00 1.40
524 547 7.592938 TGCTCGAGATACAAAAATGACAAAAT 58.407 30.769 18.75 0.00 0.00 1.82
525 548 6.964908 TGCTCGAGATACAAAAATGACAAAA 58.035 32.000 18.75 0.00 0.00 2.44
526 549 6.552859 TGCTCGAGATACAAAAATGACAAA 57.447 33.333 18.75 0.00 0.00 2.83
527 550 6.552859 TTGCTCGAGATACAAAAATGACAA 57.447 33.333 18.75 2.82 0.00 3.18
528 551 6.741992 ATTGCTCGAGATACAAAAATGACA 57.258 33.333 18.75 0.00 0.00 3.58
529 552 8.452989 AAAATTGCTCGAGATACAAAAATGAC 57.547 30.769 18.75 0.00 0.00 3.06
589 612 4.552355 CAGCACATTGACACAACATCAAT 58.448 39.130 0.00 0.00 45.57 2.57
590 613 3.243468 CCAGCACATTGACACAACATCAA 60.243 43.478 0.00 0.00 40.25 2.57
591 614 2.293955 CCAGCACATTGACACAACATCA 59.706 45.455 0.00 0.00 0.00 3.07
592 615 2.553602 TCCAGCACATTGACACAACATC 59.446 45.455 0.00 0.00 0.00 3.06
593 616 2.585330 TCCAGCACATTGACACAACAT 58.415 42.857 0.00 0.00 0.00 2.71
594 617 2.049888 TCCAGCACATTGACACAACA 57.950 45.000 0.00 0.00 0.00 3.33
595 618 3.648339 AATCCAGCACATTGACACAAC 57.352 42.857 0.00 0.00 0.00 3.32
596 619 4.669206 AAAATCCAGCACATTGACACAA 57.331 36.364 0.00 0.00 0.00 3.33
597 620 4.669206 AAAAATCCAGCACATTGACACA 57.331 36.364 0.00 0.00 0.00 3.72
640 663 8.357402 GGTACTCCAAACTTGATAACACATTTT 58.643 33.333 0.00 0.00 0.00 1.82
641 664 7.308348 CGGTACTCCAAACTTGATAACACATTT 60.308 37.037 0.00 0.00 0.00 2.32
642 665 6.148811 CGGTACTCCAAACTTGATAACACATT 59.851 38.462 0.00 0.00 0.00 2.71
643 666 5.642063 CGGTACTCCAAACTTGATAACACAT 59.358 40.000 0.00 0.00 0.00 3.21
644 667 4.992319 CGGTACTCCAAACTTGATAACACA 59.008 41.667 0.00 0.00 0.00 3.72
645 668 4.390909 CCGGTACTCCAAACTTGATAACAC 59.609 45.833 0.00 0.00 0.00 3.32
646 669 4.563993 CCCGGTACTCCAAACTTGATAACA 60.564 45.833 0.00 0.00 0.00 2.41
647 670 3.937079 CCCGGTACTCCAAACTTGATAAC 59.063 47.826 0.00 0.00 0.00 1.89
648 671 3.839490 TCCCGGTACTCCAAACTTGATAA 59.161 43.478 0.00 0.00 0.00 1.75
649 672 3.443052 TCCCGGTACTCCAAACTTGATA 58.557 45.455 0.00 0.00 0.00 2.15
650 673 2.236395 CTCCCGGTACTCCAAACTTGAT 59.764 50.000 0.00 0.00 0.00 2.57
651 674 1.621814 CTCCCGGTACTCCAAACTTGA 59.378 52.381 0.00 0.00 0.00 3.02
652 675 1.944430 GCTCCCGGTACTCCAAACTTG 60.944 57.143 0.00 0.00 0.00 3.16
653 676 0.323957 GCTCCCGGTACTCCAAACTT 59.676 55.000 0.00 0.00 0.00 2.66
654 677 0.834687 TGCTCCCGGTACTCCAAACT 60.835 55.000 0.00 0.00 0.00 2.66
655 678 0.672711 GTGCTCCCGGTACTCCAAAC 60.673 60.000 0.00 0.00 0.00 2.93
656 679 1.675219 GTGCTCCCGGTACTCCAAA 59.325 57.895 0.00 0.00 0.00 3.28
657 680 2.288025 GGTGCTCCCGGTACTCCAA 61.288 63.158 0.00 0.00 0.00 3.53
658 681 2.682494 GGTGCTCCCGGTACTCCA 60.682 66.667 0.00 0.00 0.00 3.86
659 682 3.468140 GGGTGCTCCCGGTACTCC 61.468 72.222 8.37 0.00 44.74 3.85
668 691 2.832498 GCATCCCTAGGGTGCTCC 59.168 66.667 31.85 15.62 38.41 4.70
669 692 2.093537 CTCGCATCCCTAGGGTGCTC 62.094 65.000 33.65 20.44 38.90 4.26
670 693 2.041922 TCGCATCCCTAGGGTGCT 60.042 61.111 33.65 18.94 38.90 4.40
671 694 1.113517 TACTCGCATCCCTAGGGTGC 61.114 60.000 30.52 30.52 38.23 5.01
672 695 0.674534 GTACTCGCATCCCTAGGGTG 59.325 60.000 27.58 23.28 36.47 4.61
673 696 0.469518 GGTACTCGCATCCCTAGGGT 60.470 60.000 27.58 12.24 36.47 4.34
674 697 0.469331 TGGTACTCGCATCCCTAGGG 60.469 60.000 23.22 23.22 0.00 3.53
675 698 0.962489 CTGGTACTCGCATCCCTAGG 59.038 60.000 0.06 0.06 0.00 3.02
676 699 1.982660 TCTGGTACTCGCATCCCTAG 58.017 55.000 0.00 0.00 0.00 3.02
677 700 2.677542 ATCTGGTACTCGCATCCCTA 57.322 50.000 0.00 0.00 0.00 3.53
678 701 2.677542 TATCTGGTACTCGCATCCCT 57.322 50.000 0.00 0.00 0.00 4.20
679 702 3.963428 AATATCTGGTACTCGCATCCC 57.037 47.619 0.00 0.00 0.00 3.85
680 703 4.246458 GGAAATATCTGGTACTCGCATCC 58.754 47.826 0.00 0.00 0.00 3.51
681 704 4.246458 GGGAAATATCTGGTACTCGCATC 58.754 47.826 0.00 0.00 0.00 3.91
682 705 3.008049 GGGGAAATATCTGGTACTCGCAT 59.992 47.826 0.00 0.00 0.00 4.73
683 706 2.367567 GGGGAAATATCTGGTACTCGCA 59.632 50.000 0.00 0.00 0.00 5.10
684 707 2.633481 AGGGGAAATATCTGGTACTCGC 59.367 50.000 0.00 0.00 0.00 5.03
685 708 3.006967 CCAGGGGAAATATCTGGTACTCG 59.993 52.174 0.00 0.00 42.17 4.18
686 709 3.328050 CCCAGGGGAAATATCTGGTACTC 59.672 52.174 0.00 0.00 44.78 2.59
687 710 3.312155 ACCCAGGGGAAATATCTGGTACT 60.312 47.826 11.37 0.00 44.78 2.73
688 711 3.053826 ACCCAGGGGAAATATCTGGTAC 58.946 50.000 11.37 0.00 44.78 3.34
689 712 3.053077 CACCCAGGGGAAATATCTGGTA 58.947 50.000 11.37 0.00 44.78 3.25
690 713 1.852965 CACCCAGGGGAAATATCTGGT 59.147 52.381 11.37 0.00 44.78 4.00
691 714 1.479389 GCACCCAGGGGAAATATCTGG 60.479 57.143 11.37 0.00 45.57 3.86
692 715 1.496429 AGCACCCAGGGGAAATATCTG 59.504 52.381 11.37 0.00 38.96 2.90
693 716 1.496429 CAGCACCCAGGGGAAATATCT 59.504 52.381 11.37 0.00 38.96 1.98
694 717 1.986882 CAGCACCCAGGGGAAATATC 58.013 55.000 11.37 0.00 38.96 1.63
695 718 0.106015 GCAGCACCCAGGGGAAATAT 60.106 55.000 11.37 0.00 38.96 1.28
696 719 1.306296 GCAGCACCCAGGGGAAATA 59.694 57.895 11.37 0.00 38.96 1.40
697 720 2.037847 GCAGCACCCAGGGGAAAT 59.962 61.111 11.37 0.00 38.96 2.17
698 721 4.299796 GGCAGCACCCAGGGGAAA 62.300 66.667 11.37 0.00 38.96 3.13
703 726 4.275508 ACAGTGGCAGCACCCAGG 62.276 66.667 0.00 0.00 37.83 4.45
704 727 2.981909 CACAGTGGCAGCACCCAG 60.982 66.667 0.00 0.00 37.83 4.45
822 852 3.435671 ACTGTTATTAGGTCTTTGTGCGC 59.564 43.478 0.00 0.00 0.00 6.09
823 853 5.291128 CCTACTGTTATTAGGTCTTTGTGCG 59.709 44.000 0.00 0.00 32.67 5.34
1035 1070 2.174360 CATGAGCCGAGGATGAGGATA 58.826 52.381 0.00 0.00 0.00 2.59
1129 1164 2.882876 CGGGATGAGGACGAACGT 59.117 61.111 0.00 0.00 0.00 3.99
1240 1275 4.101448 CCTCCCCTGGCAAGACGG 62.101 72.222 0.00 0.00 0.00 4.79
1347 1385 1.076485 ATTGGCCATGAGGGAGCAC 60.076 57.895 6.09 0.00 40.01 4.40
1422 1460 2.040544 GCTGTTGGGGATGACACCG 61.041 63.158 0.00 0.00 43.75 4.94
1439 1477 0.389391 TCAGCTAGCTTACCATCCGC 59.611 55.000 16.46 0.00 0.00 5.54
1453 1494 3.370840 TTAATGGATGGCAAGTCAGCT 57.629 42.857 0.00 0.00 34.17 4.24
1477 1518 1.712000 AAAACCCACACCGGCCTACT 61.712 55.000 0.00 0.00 0.00 2.57
1480 1521 2.131067 CAAAAACCCACACCGGCCT 61.131 57.895 0.00 0.00 0.00 5.19
1493 1541 0.683973 ACCATGAATGCCGGCAAAAA 59.316 45.000 36.33 21.82 0.00 1.94
1531 1579 2.535984 CGTAGCATTCTTAGACGCCTTG 59.464 50.000 0.00 0.00 0.00 3.61
1532 1580 2.165845 ACGTAGCATTCTTAGACGCCTT 59.834 45.455 0.00 0.00 37.02 4.35
1533 1581 1.749634 ACGTAGCATTCTTAGACGCCT 59.250 47.619 0.00 0.00 37.02 5.52
1534 1582 1.852895 CACGTAGCATTCTTAGACGCC 59.147 52.381 0.00 0.00 37.02 5.68
1548 1596 1.804326 GTGGCGTACCTGCACGTAG 60.804 63.158 0.00 0.00 43.79 3.51
1561 1609 2.954868 GCGTACTGATCCGTGGCG 60.955 66.667 0.00 5.97 0.00 5.69
1843 1891 3.792053 CTGGGTGCCGCTATCGTCC 62.792 68.421 0.00 0.00 0.00 4.79
2422 2470 0.107654 CGATGTCCACCTTCCCTTCC 60.108 60.000 0.00 0.00 0.00 3.46
2533 2581 1.001248 CCCCTCGAACCTCACCCTA 59.999 63.158 0.00 0.00 0.00 3.53
2579 2627 1.341285 CCTGGCCATCACCTCATCAAA 60.341 52.381 5.51 0.00 0.00 2.69
2662 2710 0.615850 GCTAGTGTCAGGAGCCCTTT 59.384 55.000 0.00 0.00 0.00 3.11
2684 2732 9.246670 TGCCACCTACGTATACAGTAATATAAT 57.753 33.333 3.32 0.00 0.00 1.28
2685 2733 8.634335 TGCCACCTACGTATACAGTAATATAA 57.366 34.615 3.32 0.00 0.00 0.98
2686 2734 8.812513 ATGCCACCTACGTATACAGTAATATA 57.187 34.615 3.32 0.00 0.00 0.86
2687 2735 7.713734 ATGCCACCTACGTATACAGTAATAT 57.286 36.000 3.32 0.00 0.00 1.28
2718 2766 7.832769 ACAACAAAACTAGTACAAACACCAAT 58.167 30.769 0.00 0.00 0.00 3.16
2796 2849 6.430925 ACGAAGTGAGAATCCATTTTCAATCA 59.569 34.615 0.00 0.00 42.51 2.57
2797 2850 6.846350 ACGAAGTGAGAATCCATTTTCAATC 58.154 36.000 0.00 0.00 42.51 2.67
2836 2889 8.846607 GCGTTACATTTTTCGAAAAACATAGAT 58.153 29.630 32.14 16.52 40.33 1.98
2840 2893 5.176039 GGGCGTTACATTTTTCGAAAAACAT 59.824 36.000 32.14 25.10 40.33 2.71
2854 2908 1.070105 ACACGTGTGGGCGTTACAT 59.930 52.632 22.71 0.00 43.83 2.29
2898 2953 2.467880 AGTTACTGGACGGTGATGGAT 58.532 47.619 0.00 0.00 0.00 3.41
2944 2999 5.069914 TGTCCTACGTGGCATATAAATCAGT 59.930 40.000 0.00 0.00 35.26 3.41
2952 3007 2.223735 CGAGTTGTCCTACGTGGCATAT 60.224 50.000 0.00 0.00 35.26 1.78
2977 3033 0.318441 CGACCTCTCACACACCACAT 59.682 55.000 0.00 0.00 0.00 3.21
3028 3086 1.894756 GCTAAACGCCCACACACCA 60.895 57.895 0.00 0.00 0.00 4.17
3155 3213 3.371168 CCATGTACACTGCAAAACACAC 58.629 45.455 0.00 0.00 0.00 3.82
3158 3216 2.027385 TGCCATGTACACTGCAAAACA 58.973 42.857 16.42 0.00 0.00 2.83
3183 3241 3.941573 TCTGCTTGCAATCACACTATGA 58.058 40.909 0.00 0.00 43.13 2.15
3185 3243 3.630769 CCATCTGCTTGCAATCACACTAT 59.369 43.478 0.00 0.00 0.00 2.12
3276 3336 1.153901 GCTTACGTGCACGCTAGGA 60.154 57.895 37.35 17.96 44.43 2.94
3492 3556 4.630894 TTTTTGGACAACTACAGCTGTG 57.369 40.909 29.57 20.07 0.00 3.66
3584 3648 1.276705 TGCTGAACTACGGTTGCCATA 59.723 47.619 0.00 0.00 35.58 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.