Multiple sequence alignment - TraesCS2D01G450000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G450000 chr2D 100.000 4607 0 0 1 4607 559321225 559316619 0.000000e+00 8508.0
1 TraesCS2D01G450000 chr2A 92.065 2470 153 21 1901 4362 699875897 699873463 0.000000e+00 3435.0
2 TraesCS2D01G450000 chr2A 91.000 1000 70 9 910 1902 699876936 699875950 0.000000e+00 1330.0
3 TraesCS2D01G450000 chr2A 88.835 206 14 4 675 871 699877591 699877386 1.280000e-60 244.0
4 TraesCS2D01G450000 chr2A 79.412 306 43 10 302 600 699877928 699877636 1.010000e-46 198.0
5 TraesCS2D01G450000 chr2A 83.333 150 4 9 4458 4607 699871186 699871058 8.100000e-23 119.0
6 TraesCS2D01G450000 chr2B 94.101 2170 109 16 1900 4059 668383049 668380889 0.000000e+00 3280.0
7 TraesCS2D01G450000 chr2B 91.736 1077 55 15 260 1312 668384781 668383715 0.000000e+00 1465.0
8 TraesCS2D01G450000 chr2B 89.583 480 40 5 1314 1785 668383655 668383178 6.600000e-168 601.0
9 TraesCS2D01G450000 chr2B 88.934 497 25 14 4130 4607 668380868 668380383 1.850000e-163 586.0
10 TraesCS2D01G450000 chr2B 97.727 264 5 1 1 264 668565237 668564975 1.950000e-123 453.0
11 TraesCS2D01G450000 chr2B 90.789 76 4 2 597 672 375132094 375132022 1.050000e-16 99.0
12 TraesCS2D01G450000 chr4B 90.789 76 3 2 602 676 597668150 597668078 1.050000e-16 99.0
13 TraesCS2D01G450000 chr7B 89.744 78 4 3 596 672 745107314 745107388 3.790000e-16 97.1
14 TraesCS2D01G450000 chr6A 89.744 78 5 2 595 672 25688540 25688614 3.790000e-16 97.1
15 TraesCS2D01G450000 chr3A 89.744 78 5 3 596 672 729477940 729478015 3.790000e-16 97.1
16 TraesCS2D01G450000 chr6B 88.750 80 5 3 594 672 6785934 6786010 1.360000e-15 95.3
17 TraesCS2D01G450000 chr6B 89.333 75 4 3 596 669 555856889 555856960 1.770000e-14 91.6
18 TraesCS2D01G450000 chr3D 89.474 76 5 2 597 672 25199430 25199358 4.910000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G450000 chr2D 559316619 559321225 4606 True 8508.0 8508 100.0000 1 4607 1 chr2D.!!$R1 4606
1 TraesCS2D01G450000 chr2A 699871058 699877928 6870 True 1065.2 3435 86.9290 302 4607 5 chr2A.!!$R1 4305
2 TraesCS2D01G450000 chr2B 668380383 668384781 4398 True 1483.0 3280 91.0885 260 4607 4 chr2B.!!$R3 4347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 1384 0.104409 ACCCATCCCTCCCTACCATC 60.104 60.0 0.00 0.0 0.00 3.51 F
945 1390 0.563173 CCCTCCCTACCATCTCCTCA 59.437 60.0 0.00 0.0 0.00 3.86 F
2135 2737 0.469144 TTTGGTGGCCCTCCTTTGAC 60.469 55.0 13.97 0.0 0.00 3.18 F
2389 2991 0.824759 AGGAAGCCACGACTGGTATC 59.175 55.0 0.00 0.0 40.17 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 2704 0.320771 ACCAAAGTAGCACGCAGAGG 60.321 55.0 0.00 0.0 0.00 3.69 R
2389 2991 2.093973 ACAGTTCTAGATGCCCAAGACG 60.094 50.0 0.00 0.0 0.00 4.18 R
3396 4001 0.596600 TCGCTTCGTTCACCACTGTC 60.597 55.0 0.00 0.0 0.00 3.51 R
4242 4854 0.094730 GAACCGCGTTGACTATGCAC 59.905 55.0 4.92 0.0 38.77 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.114359 AGAAACAAACATGTATTTTTCACGTG 57.886 30.769 9.94 9.94 38.59 4.49
26 27 6.820470 AACAAACATGTATTTTTCACGTGG 57.180 33.333 17.00 0.00 37.25 4.94
27 28 4.742659 ACAAACATGTATTTTTCACGTGGC 59.257 37.500 17.00 0.00 37.25 5.01
28 29 3.196007 ACATGTATTTTTCACGTGGCG 57.804 42.857 17.00 0.00 37.25 5.69
29 30 2.809119 ACATGTATTTTTCACGTGGCGA 59.191 40.909 17.00 0.00 37.25 5.54
30 31 3.438781 ACATGTATTTTTCACGTGGCGAT 59.561 39.130 17.00 7.67 37.25 4.58
31 32 3.463533 TGTATTTTTCACGTGGCGATG 57.536 42.857 17.00 0.00 0.00 3.84
32 33 2.809119 TGTATTTTTCACGTGGCGATGT 59.191 40.909 17.00 0.73 0.00 3.06
33 34 2.611974 ATTTTTCACGTGGCGATGTC 57.388 45.000 17.00 0.00 0.00 3.06
34 35 1.300481 TTTTTCACGTGGCGATGTCA 58.700 45.000 17.00 0.00 0.00 3.58
35 36 1.518325 TTTTCACGTGGCGATGTCAT 58.482 45.000 17.00 0.00 0.00 3.06
36 37 2.371910 TTTCACGTGGCGATGTCATA 57.628 45.000 17.00 0.00 0.00 2.15
37 38 2.595124 TTCACGTGGCGATGTCATAT 57.405 45.000 17.00 0.00 0.00 1.78
38 39 2.134201 TCACGTGGCGATGTCATATC 57.866 50.000 17.00 0.00 0.00 1.63
39 40 0.778223 CACGTGGCGATGTCATATCG 59.222 55.000 7.95 0.00 43.72 2.92
40 41 0.666374 ACGTGGCGATGTCATATCGA 59.334 50.000 8.15 0.00 43.59 3.59
63 64 9.611284 TCGACAATAATTTCTTTCAACTTCATG 57.389 29.630 0.00 0.00 0.00 3.07
64 65 9.398170 CGACAATAATTTCTTTCAACTTCATGT 57.602 29.630 0.00 0.00 0.00 3.21
79 80 9.087424 TCAACTTCATGTTACTCAAATATCTCG 57.913 33.333 0.00 0.00 37.07 4.04
80 81 8.331022 CAACTTCATGTTACTCAAATATCTCGG 58.669 37.037 0.00 0.00 37.07 4.63
81 82 7.782049 ACTTCATGTTACTCAAATATCTCGGA 58.218 34.615 0.00 0.00 0.00 4.55
82 83 8.424918 ACTTCATGTTACTCAAATATCTCGGAT 58.575 33.333 0.00 0.00 0.00 4.18
83 84 9.914131 CTTCATGTTACTCAAATATCTCGGATA 57.086 33.333 0.00 0.00 0.00 2.59
84 85 9.914131 TTCATGTTACTCAAATATCTCGGATAG 57.086 33.333 0.00 0.00 0.00 2.08
85 86 9.297037 TCATGTTACTCAAATATCTCGGATAGA 57.703 33.333 0.00 0.00 39.02 1.98
86 87 9.914131 CATGTTACTCAAATATCTCGGATAGAA 57.086 33.333 0.00 0.00 37.89 2.10
122 123 7.896383 TTTTTATCAAGGAGGTTATGGGATG 57.104 36.000 0.00 0.00 0.00 3.51
123 124 6.590656 TTTATCAAGGAGGTTATGGGATGT 57.409 37.500 0.00 0.00 0.00 3.06
124 125 4.713792 ATCAAGGAGGTTATGGGATGTC 57.286 45.455 0.00 0.00 0.00 3.06
125 126 2.434336 TCAAGGAGGTTATGGGATGTCG 59.566 50.000 0.00 0.00 0.00 4.35
126 127 1.424638 AGGAGGTTATGGGATGTCGG 58.575 55.000 0.00 0.00 0.00 4.79
127 128 1.062428 AGGAGGTTATGGGATGTCGGA 60.062 52.381 0.00 0.00 0.00 4.55
128 129 1.978580 GGAGGTTATGGGATGTCGGAT 59.021 52.381 0.00 0.00 0.00 4.18
129 130 2.372172 GGAGGTTATGGGATGTCGGATT 59.628 50.000 0.00 0.00 0.00 3.01
130 131 3.181443 GGAGGTTATGGGATGTCGGATTT 60.181 47.826 0.00 0.00 0.00 2.17
131 132 4.461198 GAGGTTATGGGATGTCGGATTTT 58.539 43.478 0.00 0.00 0.00 1.82
132 133 5.455612 GGAGGTTATGGGATGTCGGATTTTA 60.456 44.000 0.00 0.00 0.00 1.52
133 134 5.621193 AGGTTATGGGATGTCGGATTTTAG 58.379 41.667 0.00 0.00 0.00 1.85
134 135 4.215613 GGTTATGGGATGTCGGATTTTAGC 59.784 45.833 0.00 0.00 0.00 3.09
135 136 3.864789 ATGGGATGTCGGATTTTAGCT 57.135 42.857 0.00 0.00 0.00 3.32
136 137 3.194005 TGGGATGTCGGATTTTAGCTC 57.806 47.619 0.00 0.00 0.00 4.09
137 138 2.158813 TGGGATGTCGGATTTTAGCTCC 60.159 50.000 0.00 0.00 0.00 4.70
138 139 2.104963 GGGATGTCGGATTTTAGCTCCT 59.895 50.000 0.00 0.00 0.00 3.69
139 140 3.394719 GGATGTCGGATTTTAGCTCCTC 58.605 50.000 0.00 0.00 0.00 3.71
140 141 3.181465 GGATGTCGGATTTTAGCTCCTCA 60.181 47.826 0.00 0.00 0.00 3.86
141 142 3.526931 TGTCGGATTTTAGCTCCTCAG 57.473 47.619 0.00 0.00 0.00 3.35
142 143 3.096852 TGTCGGATTTTAGCTCCTCAGA 58.903 45.455 0.00 0.00 0.00 3.27
143 144 3.131223 TGTCGGATTTTAGCTCCTCAGAG 59.869 47.826 0.00 0.00 43.57 3.35
155 156 3.360867 CTCCTCAGAGCTAGGAAGTTCA 58.639 50.000 5.01 0.00 42.56 3.18
156 157 3.766591 CTCCTCAGAGCTAGGAAGTTCAA 59.233 47.826 5.01 0.00 42.56 2.69
157 158 3.766591 TCCTCAGAGCTAGGAAGTTCAAG 59.233 47.826 5.01 2.78 40.23 3.02
158 159 3.513515 CCTCAGAGCTAGGAAGTTCAAGT 59.486 47.826 5.01 0.00 35.53 3.16
159 160 4.381505 CCTCAGAGCTAGGAAGTTCAAGTC 60.382 50.000 5.01 3.03 35.53 3.01
160 161 3.191581 TCAGAGCTAGGAAGTTCAAGTCG 59.808 47.826 5.01 0.00 35.53 4.18
161 162 3.191581 CAGAGCTAGGAAGTTCAAGTCGA 59.808 47.826 5.01 0.00 35.53 4.20
162 163 3.191791 AGAGCTAGGAAGTTCAAGTCGAC 59.808 47.826 7.70 7.70 35.53 4.20
163 164 3.158676 AGCTAGGAAGTTCAAGTCGACT 58.841 45.455 13.58 13.58 0.00 4.18
164 165 3.191791 AGCTAGGAAGTTCAAGTCGACTC 59.808 47.826 20.33 6.18 0.00 3.36
165 166 3.673866 GCTAGGAAGTTCAAGTCGACTCC 60.674 52.174 20.33 13.89 0.00 3.85
166 167 2.317040 AGGAAGTTCAAGTCGACTCCA 58.683 47.619 20.33 5.33 0.00 3.86
167 168 2.036089 AGGAAGTTCAAGTCGACTCCAC 59.964 50.000 20.33 15.18 0.00 4.02
168 169 2.052157 GAAGTTCAAGTCGACTCCACG 58.948 52.381 20.33 8.16 0.00 4.94
169 170 0.318784 AGTTCAAGTCGACTCCACGC 60.319 55.000 20.33 8.60 0.00 5.34
170 171 0.318784 GTTCAAGTCGACTCCACGCT 60.319 55.000 20.33 0.00 0.00 5.07
171 172 0.387929 TTCAAGTCGACTCCACGCTT 59.612 50.000 20.33 0.00 33.05 4.68
172 173 0.318699 TCAAGTCGACTCCACGCTTG 60.319 55.000 20.33 11.64 42.45 4.01
173 174 1.006102 AAGTCGACTCCACGCTTGG 60.006 57.895 20.33 1.99 45.56 3.61
182 183 4.604114 CACGCTTGGAGCTCATGA 57.396 55.556 17.19 0.00 39.60 3.07
183 184 2.381109 CACGCTTGGAGCTCATGAG 58.619 57.895 18.84 18.84 39.60 2.90
184 185 1.088340 CACGCTTGGAGCTCATGAGG 61.088 60.000 23.89 7.40 39.60 3.86
185 186 1.260538 ACGCTTGGAGCTCATGAGGA 61.261 55.000 23.89 0.00 39.60 3.71
186 187 0.530211 CGCTTGGAGCTCATGAGGAG 60.530 60.000 23.89 4.44 46.93 3.69
198 199 4.720649 TCATGAGGAGAGTTTCTAACGG 57.279 45.455 0.00 0.00 36.23 4.44
199 200 3.119101 TCATGAGGAGAGTTTCTAACGGC 60.119 47.826 0.00 0.00 36.23 5.68
200 201 1.549170 TGAGGAGAGTTTCTAACGGCC 59.451 52.381 0.00 0.00 36.23 6.13
201 202 1.549170 GAGGAGAGTTTCTAACGGCCA 59.451 52.381 2.24 0.00 36.23 5.36
202 203 1.975680 AGGAGAGTTTCTAACGGCCAA 59.024 47.619 2.24 0.00 36.23 4.52
203 204 2.074576 GGAGAGTTTCTAACGGCCAAC 58.925 52.381 2.24 0.00 36.23 3.77
204 205 2.074576 GAGAGTTTCTAACGGCCAACC 58.925 52.381 2.24 0.00 36.23 3.77
205 206 1.697982 AGAGTTTCTAACGGCCAACCT 59.302 47.619 2.24 0.00 36.23 3.50
206 207 2.901839 AGAGTTTCTAACGGCCAACCTA 59.098 45.455 2.24 0.00 36.23 3.08
207 208 3.518303 AGAGTTTCTAACGGCCAACCTAT 59.482 43.478 2.24 0.00 36.23 2.57
208 209 4.019591 AGAGTTTCTAACGGCCAACCTATT 60.020 41.667 2.24 0.00 36.23 1.73
209 210 4.259356 AGTTTCTAACGGCCAACCTATTC 58.741 43.478 2.24 0.00 36.23 1.75
210 211 4.019591 AGTTTCTAACGGCCAACCTATTCT 60.020 41.667 2.24 0.00 36.23 2.40
211 212 5.188359 AGTTTCTAACGGCCAACCTATTCTA 59.812 40.000 2.24 0.00 36.23 2.10
212 213 5.680594 TTCTAACGGCCAACCTATTCTAA 57.319 39.130 2.24 0.00 0.00 2.10
213 214 5.680594 TCTAACGGCCAACCTATTCTAAA 57.319 39.130 2.24 0.00 0.00 1.85
214 215 5.667466 TCTAACGGCCAACCTATTCTAAAG 58.333 41.667 2.24 0.00 0.00 1.85
215 216 3.994931 ACGGCCAACCTATTCTAAAGT 57.005 42.857 2.24 0.00 0.00 2.66
216 217 4.296621 ACGGCCAACCTATTCTAAAGTT 57.703 40.909 2.24 0.00 0.00 2.66
217 218 4.007659 ACGGCCAACCTATTCTAAAGTTG 58.992 43.478 2.24 0.00 39.41 3.16
222 223 4.930696 CAACCTATTCTAAAGTTGGGGGT 58.069 43.478 0.00 0.00 36.74 4.95
223 224 4.586306 ACCTATTCTAAAGTTGGGGGTG 57.414 45.455 0.00 0.00 0.00 4.61
224 225 3.268595 ACCTATTCTAAAGTTGGGGGTGG 59.731 47.826 0.00 0.00 0.00 4.61
225 226 2.919772 ATTCTAAAGTTGGGGGTGGG 57.080 50.000 0.00 0.00 0.00 4.61
226 227 0.781278 TTCTAAAGTTGGGGGTGGGG 59.219 55.000 0.00 0.00 0.00 4.96
227 228 1.304962 CTAAAGTTGGGGGTGGGGC 60.305 63.158 0.00 0.00 0.00 5.80
228 229 3.212796 TAAAGTTGGGGGTGGGGCG 62.213 63.158 0.00 0.00 0.00 6.13
252 253 6.635030 GGGGGAGTGATTAATTTGTGATAC 57.365 41.667 0.00 0.00 0.00 2.24
253 254 5.535030 GGGGGAGTGATTAATTTGTGATACC 59.465 44.000 0.00 0.00 0.00 2.73
254 255 6.365520 GGGGAGTGATTAATTTGTGATACCT 58.634 40.000 0.00 0.00 0.00 3.08
255 256 6.833933 GGGGAGTGATTAATTTGTGATACCTT 59.166 38.462 0.00 0.00 0.00 3.50
256 257 7.996644 GGGGAGTGATTAATTTGTGATACCTTA 59.003 37.037 0.00 0.00 0.00 2.69
257 258 9.574516 GGGAGTGATTAATTTGTGATACCTTAT 57.425 33.333 0.00 0.00 0.00 1.73
259 260 9.884465 GAGTGATTAATTTGTGATACCTTATGC 57.116 33.333 0.00 0.00 0.00 3.14
260 261 9.407380 AGTGATTAATTTGTGATACCTTATGCA 57.593 29.630 0.00 0.00 0.00 3.96
271 272 8.253810 TGTGATACCTTATGCATAGAGCTAATC 58.746 37.037 6.50 7.48 45.94 1.75
343 344 8.621532 AAGTAGCAAAATCAATGACTTGACTA 57.378 30.769 10.14 8.21 43.92 2.59
450 457 8.382030 TCAATATAATGTTGCTACAGACATGG 57.618 34.615 7.16 0.00 37.77 3.66
522 530 1.009829 GAGCAAACCAGATAGCACCG 58.990 55.000 0.00 0.00 0.00 4.94
530 538 3.793559 ACCAGATAGCACCGTTCAATAC 58.206 45.455 0.00 0.00 0.00 1.89
532 540 4.081087 ACCAGATAGCACCGTTCAATACTT 60.081 41.667 0.00 0.00 0.00 2.24
575 583 1.527034 CAACTGTCCTCCACACCATG 58.473 55.000 0.00 0.00 0.00 3.66
607 615 9.962783 AACATCAATATTTAGTACTACTCCGTC 57.037 33.333 0.91 0.00 0.00 4.79
841 874 2.034066 TCTTTCCTTGGCCCGCTG 59.966 61.111 0.00 0.00 0.00 5.18
900 933 3.083997 GATCGTCCCCAGCACCCT 61.084 66.667 0.00 0.00 0.00 4.34
901 934 1.760875 GATCGTCCCCAGCACCCTA 60.761 63.158 0.00 0.00 0.00 3.53
902 935 2.029307 GATCGTCCCCAGCACCCTAC 62.029 65.000 0.00 0.00 0.00 3.18
931 1376 2.444895 AGCTCGACCCATCCCTCC 60.445 66.667 0.00 0.00 0.00 4.30
939 1384 0.104409 ACCCATCCCTCCCTACCATC 60.104 60.000 0.00 0.00 0.00 3.51
945 1390 0.563173 CCCTCCCTACCATCTCCTCA 59.437 60.000 0.00 0.00 0.00 3.86
980 1425 3.382803 CTCTGCCTTCTCCTGCCGG 62.383 68.421 0.00 0.00 0.00 6.13
1060 1508 2.094649 ACGAAGACGAGGAAGCTTAAGG 60.095 50.000 0.00 0.00 42.66 2.69
1124 1572 0.975040 CCCTCCTCCTCTCACCACAG 60.975 65.000 0.00 0.00 0.00 3.66
1145 1593 1.000827 CCGATCGCTAGATGCAGTTCT 60.001 52.381 10.32 0.00 43.06 3.01
1216 1664 3.375699 TCTTAAACTCCCCCAGCTAGAG 58.624 50.000 0.00 0.00 0.00 2.43
1290 1738 0.809241 CTGAGCTTCTCCGCATGTCC 60.809 60.000 0.00 0.00 0.00 4.02
1347 1854 2.110213 TGGTCGTTCAGGTGTGGC 59.890 61.111 0.00 0.00 0.00 5.01
1384 1892 6.072673 GGAAGTGATGTTTCCTTTTCATACGT 60.073 38.462 0.00 0.00 40.75 3.57
1386 1894 7.596749 AGTGATGTTTCCTTTTCATACGTAG 57.403 36.000 0.08 0.00 0.00 3.51
1458 1966 5.163814 GGAGCAATTACATGACTTCAGTGTC 60.164 44.000 0.00 0.00 37.47 3.67
1460 1968 4.388773 GCAATTACATGACTTCAGTGTCGA 59.611 41.667 0.00 0.00 39.64 4.20
1467 1975 1.651138 GACTTCAGTGTCGAATCGCAG 59.349 52.381 0.00 0.00 0.00 5.18
1470 1978 3.242518 CTTCAGTGTCGAATCGCAGTTA 58.757 45.455 0.00 0.00 0.00 2.24
1480 1994 3.482786 GAATCGCAGTTAAGCACACTTG 58.517 45.455 0.00 0.00 36.57 3.16
1533 2047 3.801050 GCAGGCGTGATATAGCATATGAG 59.199 47.826 11.29 0.00 34.54 2.90
1537 2051 4.631377 GGCGTGATATAGCATATGAGCAAA 59.369 41.667 6.97 0.00 36.85 3.68
1542 2056 9.736023 CGTGATATAGCATATGAGCAAAGTATA 57.264 33.333 6.97 0.00 36.85 1.47
1553 2067 9.829507 ATATGAGCAAAGTATAATATCTCCTGC 57.170 33.333 0.00 0.00 0.00 4.85
1555 2069 7.157347 TGAGCAAAGTATAATATCTCCTGCAG 58.843 38.462 6.78 6.78 0.00 4.41
1572 2086 5.016051 CTGCAGTAGGATCTAAAGAGCAA 57.984 43.478 5.25 0.00 30.87 3.91
1636 2150 2.361992 CAGCTTGCTGCCCATGGA 60.362 61.111 15.22 0.00 44.23 3.41
1681 2195 2.426522 CACCATGACAGAAATCGGTGT 58.573 47.619 0.00 0.00 39.24 4.16
1794 2339 9.264653 TCCATATCTGAGTTGCATTATATCTCT 57.735 33.333 0.00 0.00 0.00 3.10
1795 2340 9.887629 CCATATCTGAGTTGCATTATATCTCTT 57.112 33.333 0.00 0.00 0.00 2.85
1854 2399 8.986991 AGACTTGATCTGGAGTAAATGTTCTAT 58.013 33.333 0.00 0.00 35.81 1.98
1855 2400 8.954950 ACTTGATCTGGAGTAAATGTTCTATG 57.045 34.615 0.00 0.00 0.00 2.23
1856 2401 8.762645 ACTTGATCTGGAGTAAATGTTCTATGA 58.237 33.333 0.00 0.00 0.00 2.15
1867 2412 9.903682 AGTAAATGTTCTATGATATTTGCATGC 57.096 29.630 11.82 11.82 30.70 4.06
1868 2413 9.903682 GTAAATGTTCTATGATATTTGCATGCT 57.096 29.630 20.33 0.40 0.00 3.79
1869 2414 8.812147 AAATGTTCTATGATATTTGCATGCTG 57.188 30.769 20.33 0.00 0.00 4.41
1870 2415 7.754851 ATGTTCTATGATATTTGCATGCTGA 57.245 32.000 20.33 7.67 0.00 4.26
1871 2416 7.754851 TGTTCTATGATATTTGCATGCTGAT 57.245 32.000 20.33 14.56 0.00 2.90
1896 2441 4.220382 CAGTTCCTGCAAAATGTCCCATAA 59.780 41.667 0.00 0.00 0.00 1.90
1902 2447 6.667414 TCCTGCAAAATGTCCCATAAATAGTT 59.333 34.615 0.00 0.00 0.00 2.24
1903 2448 7.180051 TCCTGCAAAATGTCCCATAAATAGTTT 59.820 33.333 0.00 0.00 0.00 2.66
1905 2450 9.218440 CTGCAAAATGTCCCATAAATAGTTTTT 57.782 29.630 0.00 0.00 0.00 1.94
1971 2573 6.471976 ACAATGCTTATGATGCGTGTATAG 57.528 37.500 0.00 0.00 32.18 1.31
2007 2609 5.552178 ACTTCTATGTCTGTTTTCCAGGTC 58.448 41.667 0.00 0.00 41.83 3.85
2102 2704 1.192980 CTTCGCTGCATTTTTGTTGCC 59.807 47.619 0.00 0.00 39.39 4.52
2135 2737 0.469144 TTTGGTGGCCCTCCTTTGAC 60.469 55.000 13.97 0.00 0.00 3.18
2168 2770 3.744660 AGACCAGGTTTCTGTTGTGATC 58.255 45.455 0.00 0.00 39.31 2.92
2222 2824 8.950208 AGGTACTTATCTCTTATTTGAAGTGC 57.050 34.615 0.00 0.00 27.25 4.40
2330 2932 3.077229 TGCTTGCACAACATACAACAC 57.923 42.857 0.00 0.00 0.00 3.32
2344 2946 2.561569 ACAACACTTCTTCGGAGGTTG 58.438 47.619 8.52 8.52 37.82 3.77
2389 2991 0.824759 AGGAAGCCACGACTGGTATC 59.175 55.000 0.00 0.00 40.17 2.24
2402 3004 1.414181 CTGGTATCGTCTTGGGCATCT 59.586 52.381 0.00 0.00 0.00 2.90
2403 3005 2.628178 CTGGTATCGTCTTGGGCATCTA 59.372 50.000 0.00 0.00 0.00 1.98
2467 3069 4.558226 TGTTGAGACATCTACTGGCATT 57.442 40.909 0.00 0.00 34.10 3.56
2482 3084 3.202906 TGGCATTCTAATTGTAGCGGTC 58.797 45.455 0.00 0.00 0.00 4.79
2543 3147 4.823442 TCTAGTCAACAGTAAGTTCACCGA 59.177 41.667 0.00 0.00 38.74 4.69
2607 3211 4.021016 GGAATCGAGCCTGGTGTTCTATAT 60.021 45.833 0.00 0.00 0.00 0.86
2694 3298 9.965902 ATATCTCTTTGTGACTCATTTAGGTTT 57.034 29.630 0.00 0.00 0.00 3.27
2695 3299 7.730364 TCTCTTTGTGACTCATTTAGGTTTC 57.270 36.000 0.00 0.00 0.00 2.78
2700 3304 7.815840 TTGTGACTCATTTAGGTTTCATTCA 57.184 32.000 0.00 0.00 0.00 2.57
2749 3353 4.810790 CTGTCTGTCGTATTTTGTCCTCT 58.189 43.478 0.00 0.00 0.00 3.69
2752 3356 5.694910 TGTCTGTCGTATTTTGTCCTCTTTC 59.305 40.000 0.00 0.00 0.00 2.62
2753 3357 5.694910 GTCTGTCGTATTTTGTCCTCTTTCA 59.305 40.000 0.00 0.00 0.00 2.69
2755 3359 5.607477 TGTCGTATTTTGTCCTCTTTCAGT 58.393 37.500 0.00 0.00 0.00 3.41
2765 3369 4.056050 GTCCTCTTTCAGTTGTAGCGAAA 58.944 43.478 0.00 0.00 0.00 3.46
2928 3532 2.778299 CAAGCTTAACAGTGGCAGGTA 58.222 47.619 0.00 0.00 0.00 3.08
3260 3865 8.023128 CCACCATTTGTGTAAGACTTTTATCAG 58.977 37.037 0.00 0.00 43.85 2.90
3308 3913 3.489180 ACATGTCTGACACTACTACGC 57.511 47.619 13.50 0.00 0.00 4.42
3387 3992 2.048877 GCATGCAACAGTGGTGGC 60.049 61.111 14.21 0.70 44.69 5.01
3396 4001 3.252284 AGTGGTGGCCCAGTGGAG 61.252 66.667 11.95 1.52 43.06 3.86
3555 4160 1.168407 TCTCGACCAAGACGTTCGGT 61.168 55.000 6.74 5.55 35.12 4.69
3669 4275 6.283694 TGAGTAGCACATTAACATCATCCTC 58.716 40.000 0.00 0.00 0.00 3.71
3729 4335 0.037975 CCACACATTTGGAGGCAAGC 60.038 55.000 0.00 0.00 39.24 4.01
3790 4397 2.424956 GCCCTGTGATGAACTGATTTCC 59.575 50.000 0.00 0.00 32.58 3.13
3791 4398 3.875369 GCCCTGTGATGAACTGATTTCCT 60.875 47.826 0.00 0.00 32.58 3.36
3801 4408 5.171476 TGAACTGATTTCCTTGTCGATCTC 58.829 41.667 0.00 0.00 32.58 2.75
3827 4434 1.546029 TCTCTCGGATATTCATGCGGG 59.454 52.381 0.00 0.00 46.93 6.13
3835 4442 1.159713 TATTCATGCGGGCAAGCTCG 61.160 55.000 10.45 10.45 43.79 5.03
3895 4502 1.202521 TCAGTTCTCACTTGCAAGCGA 60.203 47.619 26.27 20.86 0.00 4.93
3908 4515 1.864711 GCAAGCGACACTGTGTTAAGA 59.135 47.619 15.54 0.00 0.00 2.10
3968 4575 4.352009 TGTGCCAATTATTTCCTGATGGT 58.648 39.130 0.00 0.00 34.23 3.55
3986 4593 3.582164 TGGTGCCCCTTTTGTTAATTCT 58.418 40.909 0.00 0.00 0.00 2.40
3998 4605 8.143835 CCTTTTGTTAATTCTGTGAAGGATTGT 58.856 33.333 0.00 0.00 35.55 2.71
4016 4623 1.094785 GTGATTCATCCAACCACCGG 58.905 55.000 0.00 0.00 0.00 5.28
4032 4640 0.179108 CCGGATTTCTCCACGGTCTC 60.179 60.000 0.00 0.00 42.19 3.36
4033 4641 0.818296 CGGATTTCTCCACGGTCTCT 59.182 55.000 0.00 0.00 42.19 3.10
4034 4642 1.469940 CGGATTTCTCCACGGTCTCTG 60.470 57.143 0.00 0.00 42.19 3.35
4035 4643 1.550976 GGATTTCTCCACGGTCTCTGT 59.449 52.381 0.00 0.00 41.64 3.41
4036 4644 2.611518 GATTTCTCCACGGTCTCTGTG 58.388 52.381 2.15 2.15 37.09 3.66
4048 4657 3.251571 GGTCTCTGTGGTCATACGTTTC 58.748 50.000 0.00 0.00 0.00 2.78
4059 4668 4.630940 GGTCATACGTTTCGGGAAATGTTA 59.369 41.667 20.40 9.85 45.31 2.41
4060 4669 5.220529 GGTCATACGTTTCGGGAAATGTTAG 60.221 44.000 20.40 14.40 45.31 2.34
4061 4670 4.871557 TCATACGTTTCGGGAAATGTTAGG 59.128 41.667 20.40 12.27 45.31 2.69
4062 4671 3.405823 ACGTTTCGGGAAATGTTAGGA 57.594 42.857 12.08 0.00 45.31 2.94
4063 4672 3.946606 ACGTTTCGGGAAATGTTAGGAT 58.053 40.909 12.08 0.00 45.31 3.24
4064 4673 3.687698 ACGTTTCGGGAAATGTTAGGATG 59.312 43.478 12.08 0.00 45.31 3.51
4065 4674 3.687698 CGTTTCGGGAAATGTTAGGATGT 59.312 43.478 5.41 0.00 33.74 3.06
4066 4675 4.436852 CGTTTCGGGAAATGTTAGGATGTG 60.437 45.833 5.41 0.00 33.74 3.21
4067 4676 3.992943 TCGGGAAATGTTAGGATGTGT 57.007 42.857 0.00 0.00 0.00 3.72
4068 4677 3.605634 TCGGGAAATGTTAGGATGTGTG 58.394 45.455 0.00 0.00 0.00 3.82
4069 4678 3.008594 TCGGGAAATGTTAGGATGTGTGT 59.991 43.478 0.00 0.00 0.00 3.72
4070 4679 4.223255 TCGGGAAATGTTAGGATGTGTGTA 59.777 41.667 0.00 0.00 0.00 2.90
4071 4680 4.938832 CGGGAAATGTTAGGATGTGTGTAA 59.061 41.667 0.00 0.00 0.00 2.41
4072 4681 5.163794 CGGGAAATGTTAGGATGTGTGTAAC 60.164 44.000 0.00 0.00 37.35 2.50
4073 4682 5.944007 GGGAAATGTTAGGATGTGTGTAACT 59.056 40.000 0.00 0.00 38.04 2.24
4074 4683 6.128007 GGGAAATGTTAGGATGTGTGTAACTG 60.128 42.308 0.00 0.00 38.04 3.16
4075 4684 5.880054 AATGTTAGGATGTGTGTAACTGC 57.120 39.130 0.00 0.00 38.04 4.40
4076 4685 4.617253 TGTTAGGATGTGTGTAACTGCT 57.383 40.909 0.00 0.00 38.04 4.24
4077 4686 5.731957 TGTTAGGATGTGTGTAACTGCTA 57.268 39.130 0.00 0.00 38.04 3.49
4078 4687 5.475719 TGTTAGGATGTGTGTAACTGCTAC 58.524 41.667 0.00 0.00 38.04 3.58
4079 4688 5.245301 TGTTAGGATGTGTGTAACTGCTACT 59.755 40.000 0.00 0.00 38.04 2.57
4082 4691 3.589988 GATGTGTGTAACTGCTACTGCT 58.410 45.455 0.00 0.00 38.04 4.24
4085 4694 2.480419 GTGTGTAACTGCTACTGCTTGG 59.520 50.000 0.00 0.00 38.04 3.61
4089 4698 2.867109 AACTGCTACTGCTTGGATGT 57.133 45.000 0.00 0.00 40.48 3.06
4091 4700 1.339438 ACTGCTACTGCTTGGATGTGG 60.339 52.381 0.00 0.00 40.48 4.17
4104 4713 2.562298 TGGATGTGGAAACAAGCAATCC 59.438 45.455 0.00 0.00 46.06 3.01
4106 4715 1.974265 TGTGGAAACAAGCAATCCGA 58.026 45.000 0.00 0.00 46.06 4.55
4110 4719 3.438781 GTGGAAACAAGCAATCCGATACA 59.561 43.478 0.00 0.00 46.06 2.29
4128 4739 5.794945 CGATACAATGTCAAAATGGTGTGTC 59.205 40.000 0.00 0.00 0.00 3.67
4140 4751 1.156736 GGTGTGTCCAAACTGATCCG 58.843 55.000 0.00 0.00 35.97 4.18
4166 4777 0.311790 AAATGCTGTGTGCTGAACCG 59.688 50.000 0.00 0.00 43.37 4.44
4188 4800 4.435121 CGAAAGTTAAACTATGACGGGTGC 60.435 45.833 0.00 0.00 0.00 5.01
4234 4846 5.185056 AGTGTGAACAAGCAAAGTAAAACCT 59.815 36.000 0.00 0.00 0.00 3.50
4238 4850 5.650266 TGAACAAGCAAAGTAAAACCTCTCA 59.350 36.000 0.00 0.00 0.00 3.27
4242 4854 6.016777 ACAAGCAAAGTAAAACCTCTCAGATG 60.017 38.462 0.00 0.00 0.00 2.90
4247 4859 5.171339 AGTAAAACCTCTCAGATGTGCAT 57.829 39.130 0.00 0.00 0.00 3.96
4248 4861 6.299805 AGTAAAACCTCTCAGATGTGCATA 57.700 37.500 0.00 0.00 0.00 3.14
4260 4873 0.601576 TGTGCATAGTCAACGCGGTT 60.602 50.000 12.47 0.00 0.00 4.44
4261 4874 0.094730 GTGCATAGTCAACGCGGTTC 59.905 55.000 12.47 0.00 0.00 3.62
4262 4875 0.037697 TGCATAGTCAACGCGGTTCT 60.038 50.000 12.47 7.52 0.00 3.01
4263 4876 0.370273 GCATAGTCAACGCGGTTCTG 59.630 55.000 12.47 1.86 0.00 3.02
4312 4925 2.266055 GAGGGAACTGGGTCTGCG 59.734 66.667 0.00 0.00 44.43 5.18
4368 4982 7.923344 GTCTACGGCTCGGAGTATATATTACTA 59.077 40.741 6.90 0.00 39.12 1.82
4373 4988 6.600822 GGCTCGGAGTATATATTACTACCACA 59.399 42.308 6.90 0.00 0.00 4.17
4387 5002 3.758554 ACTACCACAATGTGAATTCCTGC 59.241 43.478 15.91 0.00 35.23 4.85
4396 5011 1.197721 GTGAATTCCTGCAACTCACCG 59.802 52.381 2.27 0.00 32.10 4.94
4397 5012 0.804989 GAATTCCTGCAACTCACCGG 59.195 55.000 0.00 0.00 0.00 5.28
4398 5013 1.244019 AATTCCTGCAACTCACCGGC 61.244 55.000 0.00 0.00 0.00 6.13
4399 5014 4.680237 TCCTGCAACTCACCGGCG 62.680 66.667 0.00 0.00 0.00 6.46
4410 5032 3.118454 ACCGGCGAGCGAACAATG 61.118 61.111 9.30 0.00 0.00 2.82
4418 5040 0.994263 GAGCGAACAATGCCAAATGC 59.006 50.000 0.00 0.00 41.77 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.221838 CCACGTGAAAAATACATGTTTGTTTCT 59.778 33.333 23.87 8.94 37.28 2.52
1 2 7.334009 CCACGTGAAAAATACATGTTTGTTTC 58.666 34.615 19.30 19.46 37.28 2.78
2 3 6.237969 GCCACGTGAAAAATACATGTTTGTTT 60.238 34.615 19.30 3.54 37.28 2.83
4 5 4.742659 GCCACGTGAAAAATACATGTTTGT 59.257 37.500 19.30 0.00 39.98 2.83
5 6 4.143639 CGCCACGTGAAAAATACATGTTTG 60.144 41.667 19.30 0.00 35.66 2.93
6 7 3.978217 CGCCACGTGAAAAATACATGTTT 59.022 39.130 19.30 0.00 35.66 2.83
7 8 3.251245 TCGCCACGTGAAAAATACATGTT 59.749 39.130 19.30 0.00 35.66 2.71
8 9 2.809119 TCGCCACGTGAAAAATACATGT 59.191 40.909 19.30 2.69 37.89 3.21
9 10 3.463533 TCGCCACGTGAAAAATACATG 57.536 42.857 19.30 0.00 0.00 3.21
10 11 3.438781 ACATCGCCACGTGAAAAATACAT 59.561 39.130 19.30 0.00 0.00 2.29
11 12 2.809119 ACATCGCCACGTGAAAAATACA 59.191 40.909 19.30 0.00 0.00 2.29
12 13 3.120477 TGACATCGCCACGTGAAAAATAC 60.120 43.478 19.30 4.28 0.00 1.89
13 14 3.067833 TGACATCGCCACGTGAAAAATA 58.932 40.909 19.30 0.00 0.00 1.40
14 15 1.876799 TGACATCGCCACGTGAAAAAT 59.123 42.857 19.30 1.88 0.00 1.82
15 16 1.300481 TGACATCGCCACGTGAAAAA 58.700 45.000 19.30 0.00 0.00 1.94
16 17 1.518325 ATGACATCGCCACGTGAAAA 58.482 45.000 19.30 1.18 0.00 2.29
17 18 2.371910 TATGACATCGCCACGTGAAA 57.628 45.000 19.30 1.59 0.00 2.69
18 19 2.469826 GATATGACATCGCCACGTGAA 58.530 47.619 19.30 2.00 0.00 3.18
19 20 1.599419 CGATATGACATCGCCACGTGA 60.599 52.381 19.30 0.00 34.66 4.35
20 21 0.778223 CGATATGACATCGCCACGTG 59.222 55.000 9.08 9.08 34.66 4.49
21 22 0.666374 TCGATATGACATCGCCACGT 59.334 50.000 1.87 0.00 40.95 4.49
22 23 3.472263 TCGATATGACATCGCCACG 57.528 52.632 1.87 0.00 40.95 4.94
37 38 9.611284 CATGAAGTTGAAAGAAATTATTGTCGA 57.389 29.630 0.00 0.00 0.00 4.20
38 39 9.398170 ACATGAAGTTGAAAGAAATTATTGTCG 57.602 29.630 0.00 0.00 0.00 4.35
53 54 9.087424 CGAGATATTTGAGTAACATGAAGTTGA 57.913 33.333 0.00 0.00 41.50 3.18
54 55 8.331022 CCGAGATATTTGAGTAACATGAAGTTG 58.669 37.037 0.00 0.00 41.50 3.16
55 56 8.258007 TCCGAGATATTTGAGTAACATGAAGTT 58.742 33.333 0.00 0.00 44.27 2.66
56 57 7.782049 TCCGAGATATTTGAGTAACATGAAGT 58.218 34.615 0.00 0.00 0.00 3.01
57 58 8.824159 ATCCGAGATATTTGAGTAACATGAAG 57.176 34.615 0.00 0.00 0.00 3.02
58 59 9.914131 CTATCCGAGATATTTGAGTAACATGAA 57.086 33.333 0.00 0.00 0.00 2.57
59 60 9.297037 TCTATCCGAGATATTTGAGTAACATGA 57.703 33.333 0.00 0.00 0.00 3.07
60 61 9.914131 TTCTATCCGAGATATTTGAGTAACATG 57.086 33.333 0.00 0.00 32.88 3.21
98 99 7.418378 ACATCCCATAACCTCCTTGATAAAAA 58.582 34.615 0.00 0.00 0.00 1.94
99 100 6.980577 ACATCCCATAACCTCCTTGATAAAA 58.019 36.000 0.00 0.00 0.00 1.52
100 101 6.590656 ACATCCCATAACCTCCTTGATAAA 57.409 37.500 0.00 0.00 0.00 1.40
101 102 5.221641 CGACATCCCATAACCTCCTTGATAA 60.222 44.000 0.00 0.00 0.00 1.75
102 103 4.283467 CGACATCCCATAACCTCCTTGATA 59.717 45.833 0.00 0.00 0.00 2.15
103 104 3.071602 CGACATCCCATAACCTCCTTGAT 59.928 47.826 0.00 0.00 0.00 2.57
104 105 2.434336 CGACATCCCATAACCTCCTTGA 59.566 50.000 0.00 0.00 0.00 3.02
105 106 2.485479 CCGACATCCCATAACCTCCTTG 60.485 54.545 0.00 0.00 0.00 3.61
106 107 1.768870 CCGACATCCCATAACCTCCTT 59.231 52.381 0.00 0.00 0.00 3.36
107 108 1.062428 TCCGACATCCCATAACCTCCT 60.062 52.381 0.00 0.00 0.00 3.69
108 109 1.420430 TCCGACATCCCATAACCTCC 58.580 55.000 0.00 0.00 0.00 4.30
109 110 3.771577 AATCCGACATCCCATAACCTC 57.228 47.619 0.00 0.00 0.00 3.85
110 111 4.519906 AAAATCCGACATCCCATAACCT 57.480 40.909 0.00 0.00 0.00 3.50
111 112 4.215613 GCTAAAATCCGACATCCCATAACC 59.784 45.833 0.00 0.00 0.00 2.85
112 113 5.063880 AGCTAAAATCCGACATCCCATAAC 58.936 41.667 0.00 0.00 0.00 1.89
113 114 5.304686 AGCTAAAATCCGACATCCCATAA 57.695 39.130 0.00 0.00 0.00 1.90
114 115 4.262894 GGAGCTAAAATCCGACATCCCATA 60.263 45.833 0.00 0.00 0.00 2.74
115 116 3.496870 GGAGCTAAAATCCGACATCCCAT 60.497 47.826 0.00 0.00 0.00 4.00
116 117 2.158813 GGAGCTAAAATCCGACATCCCA 60.159 50.000 0.00 0.00 0.00 4.37
117 118 2.104963 AGGAGCTAAAATCCGACATCCC 59.895 50.000 0.00 0.00 42.02 3.85
118 119 3.181465 TGAGGAGCTAAAATCCGACATCC 60.181 47.826 0.00 0.00 42.02 3.51
119 120 4.054671 CTGAGGAGCTAAAATCCGACATC 58.945 47.826 0.00 0.00 42.02 3.06
120 121 3.706594 TCTGAGGAGCTAAAATCCGACAT 59.293 43.478 0.00 0.00 42.02 3.06
121 122 3.096852 TCTGAGGAGCTAAAATCCGACA 58.903 45.455 0.00 0.00 42.02 4.35
122 123 3.712187 CTCTGAGGAGCTAAAATCCGAC 58.288 50.000 0.00 0.00 42.02 4.79
134 135 3.360867 TGAACTTCCTAGCTCTGAGGAG 58.639 50.000 6.83 2.39 43.99 3.69
135 136 3.458044 TGAACTTCCTAGCTCTGAGGA 57.542 47.619 6.83 0.00 41.52 3.71
136 137 3.513515 ACTTGAACTTCCTAGCTCTGAGG 59.486 47.826 6.83 0.00 35.17 3.86
137 138 4.674101 CGACTTGAACTTCCTAGCTCTGAG 60.674 50.000 0.00 0.00 0.00 3.35
138 139 3.191581 CGACTTGAACTTCCTAGCTCTGA 59.808 47.826 0.00 0.00 0.00 3.27
139 140 3.191581 TCGACTTGAACTTCCTAGCTCTG 59.808 47.826 0.00 0.00 0.00 3.35
140 141 3.191791 GTCGACTTGAACTTCCTAGCTCT 59.808 47.826 8.70 0.00 0.00 4.09
141 142 3.191791 AGTCGACTTGAACTTCCTAGCTC 59.808 47.826 13.58 0.00 0.00 4.09
142 143 3.158676 AGTCGACTTGAACTTCCTAGCT 58.841 45.455 13.58 0.00 0.00 3.32
143 144 3.503891 GAGTCGACTTGAACTTCCTAGC 58.496 50.000 21.08 0.00 0.00 3.42
144 145 3.506455 TGGAGTCGACTTGAACTTCCTAG 59.494 47.826 21.08 0.00 0.00 3.02
145 146 3.255149 GTGGAGTCGACTTGAACTTCCTA 59.745 47.826 21.08 0.00 0.00 2.94
146 147 2.036089 GTGGAGTCGACTTGAACTTCCT 59.964 50.000 21.08 0.00 0.00 3.36
147 148 2.405172 GTGGAGTCGACTTGAACTTCC 58.595 52.381 21.08 14.72 0.00 3.46
148 149 2.052157 CGTGGAGTCGACTTGAACTTC 58.948 52.381 21.08 4.77 0.00 3.01
149 150 1.868519 GCGTGGAGTCGACTTGAACTT 60.869 52.381 21.08 0.00 0.00 2.66
150 151 0.318784 GCGTGGAGTCGACTTGAACT 60.319 55.000 21.08 0.00 0.00 3.01
151 152 0.318784 AGCGTGGAGTCGACTTGAAC 60.319 55.000 21.08 16.32 0.00 3.18
152 153 0.387929 AAGCGTGGAGTCGACTTGAA 59.612 50.000 21.08 5.58 0.00 2.69
153 154 0.318699 CAAGCGTGGAGTCGACTTGA 60.319 55.000 21.08 6.44 41.92 3.02
154 155 2.145225 CAAGCGTGGAGTCGACTTG 58.855 57.895 21.08 8.19 37.96 3.16
155 156 4.655527 CAAGCGTGGAGTCGACTT 57.344 55.556 21.08 3.07 0.00 3.01
168 169 0.829333 TCTCCTCATGAGCTCCAAGC 59.171 55.000 17.76 0.00 41.18 4.01
169 170 2.109774 ACTCTCCTCATGAGCTCCAAG 58.890 52.381 17.76 11.26 41.18 3.61
170 171 2.244486 ACTCTCCTCATGAGCTCCAA 57.756 50.000 17.76 0.00 41.18 3.53
171 172 2.244486 AACTCTCCTCATGAGCTCCA 57.756 50.000 17.76 0.00 41.18 3.86
172 173 2.765699 AGAAACTCTCCTCATGAGCTCC 59.234 50.000 17.76 0.41 41.18 4.70
173 174 5.348164 GTTAGAAACTCTCCTCATGAGCTC 58.652 45.833 17.76 6.82 41.18 4.09
174 175 4.142271 CGTTAGAAACTCTCCTCATGAGCT 60.142 45.833 17.76 8.63 41.18 4.09
175 176 4.109050 CGTTAGAAACTCTCCTCATGAGC 58.891 47.826 17.76 0.87 41.18 4.26
176 177 4.677584 CCGTTAGAAACTCTCCTCATGAG 58.322 47.826 16.24 16.24 42.90 2.90
177 178 3.119101 GCCGTTAGAAACTCTCCTCATGA 60.119 47.826 0.00 0.00 0.00 3.07
178 179 3.190874 GCCGTTAGAAACTCTCCTCATG 58.809 50.000 0.00 0.00 0.00 3.07
179 180 2.168728 GGCCGTTAGAAACTCTCCTCAT 59.831 50.000 0.00 0.00 0.00 2.90
180 181 1.549170 GGCCGTTAGAAACTCTCCTCA 59.451 52.381 0.00 0.00 0.00 3.86
181 182 1.549170 TGGCCGTTAGAAACTCTCCTC 59.451 52.381 0.00 0.00 0.00 3.71
182 183 1.640917 TGGCCGTTAGAAACTCTCCT 58.359 50.000 0.00 0.00 0.00 3.69
183 184 2.074576 GTTGGCCGTTAGAAACTCTCC 58.925 52.381 0.00 0.00 0.00 3.71
184 185 2.074576 GGTTGGCCGTTAGAAACTCTC 58.925 52.381 0.00 0.00 0.00 3.20
185 186 1.697982 AGGTTGGCCGTTAGAAACTCT 59.302 47.619 0.00 0.00 40.50 3.24
186 187 2.180432 AGGTTGGCCGTTAGAAACTC 57.820 50.000 0.00 0.00 40.50 3.01
187 188 3.994931 ATAGGTTGGCCGTTAGAAACT 57.005 42.857 0.00 0.00 40.50 2.66
188 189 4.259356 AGAATAGGTTGGCCGTTAGAAAC 58.741 43.478 0.00 0.00 40.50 2.78
189 190 4.563140 AGAATAGGTTGGCCGTTAGAAA 57.437 40.909 0.00 0.00 40.50 2.52
190 191 5.680594 TTAGAATAGGTTGGCCGTTAGAA 57.319 39.130 0.00 0.00 40.50 2.10
191 192 5.188359 ACTTTAGAATAGGTTGGCCGTTAGA 59.812 40.000 0.00 0.00 40.50 2.10
192 193 5.425630 ACTTTAGAATAGGTTGGCCGTTAG 58.574 41.667 0.00 0.00 40.50 2.34
193 194 5.425196 ACTTTAGAATAGGTTGGCCGTTA 57.575 39.130 0.00 0.00 40.50 3.18
194 195 4.296621 ACTTTAGAATAGGTTGGCCGTT 57.703 40.909 0.00 0.00 40.50 4.44
195 196 3.994931 ACTTTAGAATAGGTTGGCCGT 57.005 42.857 0.00 0.00 40.50 5.68
196 197 3.377172 CCAACTTTAGAATAGGTTGGCCG 59.623 47.826 10.13 0.00 43.58 6.13
197 198 3.699538 CCCAACTTTAGAATAGGTTGGCC 59.300 47.826 15.60 0.00 45.84 5.36
198 199 3.699538 CCCCAACTTTAGAATAGGTTGGC 59.300 47.826 15.60 0.00 45.84 4.52
199 200 4.264217 ACCCCCAACTTTAGAATAGGTTGG 60.264 45.833 14.47 14.47 46.28 3.77
200 201 4.705023 CACCCCCAACTTTAGAATAGGTTG 59.295 45.833 0.00 0.00 36.54 3.77
201 202 4.264217 CCACCCCCAACTTTAGAATAGGTT 60.264 45.833 0.00 0.00 0.00 3.50
202 203 3.268595 CCACCCCCAACTTTAGAATAGGT 59.731 47.826 0.00 0.00 0.00 3.08
203 204 3.372675 CCCACCCCCAACTTTAGAATAGG 60.373 52.174 0.00 0.00 0.00 2.57
204 205 3.372675 CCCCACCCCCAACTTTAGAATAG 60.373 52.174 0.00 0.00 0.00 1.73
205 206 2.583566 CCCCACCCCCAACTTTAGAATA 59.416 50.000 0.00 0.00 0.00 1.75
206 207 1.361197 CCCCACCCCCAACTTTAGAAT 59.639 52.381 0.00 0.00 0.00 2.40
207 208 0.781278 CCCCACCCCCAACTTTAGAA 59.219 55.000 0.00 0.00 0.00 2.10
208 209 1.795951 GCCCCACCCCCAACTTTAGA 61.796 60.000 0.00 0.00 0.00 2.10
209 210 1.304962 GCCCCACCCCCAACTTTAG 60.305 63.158 0.00 0.00 0.00 1.85
210 211 2.855597 GCCCCACCCCCAACTTTA 59.144 61.111 0.00 0.00 0.00 1.85
211 212 4.614036 CGCCCCACCCCCAACTTT 62.614 66.667 0.00 0.00 0.00 2.66
229 230 5.535030 GGTATCACAAATTAATCACTCCCCC 59.465 44.000 0.00 0.00 0.00 5.40
230 231 6.365520 AGGTATCACAAATTAATCACTCCCC 58.634 40.000 0.00 0.00 0.00 4.81
231 232 7.881775 AAGGTATCACAAATTAATCACTCCC 57.118 36.000 0.00 0.00 0.00 4.30
233 234 9.884465 GCATAAGGTATCACAAATTAATCACTC 57.116 33.333 0.00 0.00 0.00 3.51
234 235 9.407380 TGCATAAGGTATCACAAATTAATCACT 57.593 29.630 0.00 0.00 0.00 3.41
240 241 9.219603 GCTCTATGCATAAGGTATCACAAATTA 57.780 33.333 8.00 0.00 42.31 1.40
241 242 7.941238 AGCTCTATGCATAAGGTATCACAAATT 59.059 33.333 8.00 0.00 45.94 1.82
242 243 7.456725 AGCTCTATGCATAAGGTATCACAAAT 58.543 34.615 8.00 0.00 45.94 2.32
243 244 6.830912 AGCTCTATGCATAAGGTATCACAAA 58.169 36.000 8.00 0.00 45.94 2.83
244 245 6.425210 AGCTCTATGCATAAGGTATCACAA 57.575 37.500 8.00 0.00 45.94 3.33
245 246 7.539034 TTAGCTCTATGCATAAGGTATCACA 57.461 36.000 19.31 9.14 45.94 3.58
246 247 8.474025 AGATTAGCTCTATGCATAAGGTATCAC 58.526 37.037 19.31 15.28 45.94 3.06
247 248 8.473219 CAGATTAGCTCTATGCATAAGGTATCA 58.527 37.037 19.31 11.66 45.94 2.15
248 249 7.437862 GCAGATTAGCTCTATGCATAAGGTATC 59.562 40.741 19.31 17.72 45.94 2.24
249 250 7.125507 AGCAGATTAGCTCTATGCATAAGGTAT 59.874 37.037 19.31 13.39 42.18 2.73
250 251 6.438741 AGCAGATTAGCTCTATGCATAAGGTA 59.561 38.462 15.63 13.71 42.18 3.08
251 252 5.248020 AGCAGATTAGCTCTATGCATAAGGT 59.752 40.000 15.63 18.17 42.18 3.50
252 253 5.732633 AGCAGATTAGCTCTATGCATAAGG 58.267 41.667 15.63 4.71 42.18 2.69
304 305 9.548208 GATTTTGCTACTTAATTCACTGACTTC 57.452 33.333 0.00 0.00 0.00 3.01
343 344 0.544120 ACGGGGCATTTTGGTTGGAT 60.544 50.000 0.00 0.00 0.00 3.41
478 485 5.053811 ACGCATAAACGGATTGATGTGATA 58.946 37.500 5.18 0.00 37.37 2.15
522 530 5.347907 ACTTTCGACGGATGAAGTATTGAAC 59.652 40.000 0.00 0.00 0.00 3.18
662 670 3.824133 TGATGGTGCTCTTCCCATAATG 58.176 45.455 0.00 0.00 41.51 1.90
669 677 2.206576 AAGGTTGATGGTGCTCTTCC 57.793 50.000 0.00 0.00 0.00 3.46
672 680 4.373156 AACTAAAGGTTGATGGTGCTCT 57.627 40.909 0.00 0.00 36.70 4.09
820 853 2.602676 CGGGCCAAGGAAAGAGGGA 61.603 63.158 4.39 0.00 0.00 4.20
824 857 2.034066 CAGCGGGCCAAGGAAAGA 59.966 61.111 4.39 0.00 0.00 2.52
884 917 2.064581 GTAGGGTGCTGGGGACGAT 61.065 63.158 0.00 0.00 0.00 3.73
900 933 4.715130 AGCTGTGGAGGGCCGGTA 62.715 66.667 1.90 0.00 36.79 4.02
905 939 4.459089 GGTCGAGCTGTGGAGGGC 62.459 72.222 7.51 0.00 0.00 5.19
931 1376 1.365633 GCGCTGAGGAGATGGTAGG 59.634 63.158 0.00 0.00 0.00 3.18
963 1408 3.393970 CCGGCAGGAGAAGGCAGA 61.394 66.667 0.00 0.00 41.02 4.26
1049 1497 2.504367 TGACAGCAACCTTAAGCTTCC 58.496 47.619 0.00 0.00 39.50 3.46
1098 1546 1.864559 AGAGGAGGAGGGTGAGGGT 60.865 63.158 0.00 0.00 0.00 4.34
1145 1593 1.554617 TCCATGGCGTCAGATTCAGAA 59.445 47.619 6.96 0.00 0.00 3.02
1216 1664 0.462759 CGAAATCAGGGACTCCAGCC 60.463 60.000 0.00 0.00 34.60 4.85
1220 1668 2.496470 ACACTACGAAATCAGGGACTCC 59.504 50.000 0.00 0.00 34.60 3.85
1290 1738 3.181450 GGTACAGAATTGGGGATCTCCTG 60.181 52.174 14.22 4.59 35.95 3.86
1347 1854 7.227512 GGAAACATCACTTCCCATACTCTTATG 59.772 40.741 0.00 0.00 37.03 1.90
1384 1892 6.852420 AGCTATCACTAGAAACACCAACTA 57.148 37.500 0.00 0.00 0.00 2.24
1386 1894 9.595823 TTATAAGCTATCACTAGAAACACCAAC 57.404 33.333 0.00 0.00 0.00 3.77
1458 1966 1.726791 AGTGTGCTTAACTGCGATTCG 59.273 47.619 0.62 0.62 35.36 3.34
1460 1968 3.542712 CAAGTGTGCTTAACTGCGATT 57.457 42.857 0.00 0.00 32.87 3.34
1480 1994 1.061131 CTGTACATGCGTTGTAGCTGC 59.939 52.381 0.00 0.00 41.45 5.25
1484 1998 2.993220 TGCTTCTGTACATGCGTTGTAG 59.007 45.455 0.00 0.00 41.45 2.74
1490 2004 1.130938 TGCAATGCTTCTGTACATGCG 59.869 47.619 6.82 0.00 0.00 4.73
1533 2047 8.472683 CTACTGCAGGAGATATTATACTTTGC 57.527 38.462 22.41 0.00 0.00 3.68
1553 2067 8.498054 TCAAAATTGCTCTTTAGATCCTACTG 57.502 34.615 0.00 0.00 0.00 2.74
1555 2069 8.897752 ACATCAAAATTGCTCTTTAGATCCTAC 58.102 33.333 0.00 0.00 0.00 3.18
1562 2076 7.094205 ACCACCTACATCAAAATTGCTCTTTAG 60.094 37.037 0.00 0.00 0.00 1.85
1569 2083 3.056607 AGCACCACCTACATCAAAATTGC 60.057 43.478 0.00 0.00 0.00 3.56
1572 2086 4.012374 CTCAGCACCACCTACATCAAAAT 58.988 43.478 0.00 0.00 0.00 1.82
1636 2150 2.673862 TGTGAAAACGTGAACATCGTGT 59.326 40.909 0.00 0.00 41.38 4.49
1681 2195 3.963129 ACCAGACACTGTTTCCTCAAAA 58.037 40.909 0.00 0.00 0.00 2.44
1810 2355 7.148641 TCAAGTCTGCCGCAAATAATTAAAAA 58.851 30.769 0.00 0.00 0.00 1.94
1811 2356 6.682746 TCAAGTCTGCCGCAAATAATTAAAA 58.317 32.000 0.00 0.00 0.00 1.52
1812 2357 6.260870 TCAAGTCTGCCGCAAATAATTAAA 57.739 33.333 0.00 0.00 0.00 1.52
1813 2358 5.888691 TCAAGTCTGCCGCAAATAATTAA 57.111 34.783 0.00 0.00 0.00 1.40
1814 2359 5.822519 AGATCAAGTCTGCCGCAAATAATTA 59.177 36.000 0.00 0.00 35.31 1.40
1815 2360 4.641989 AGATCAAGTCTGCCGCAAATAATT 59.358 37.500 0.00 0.00 35.31 1.40
1816 2361 4.202441 AGATCAAGTCTGCCGCAAATAAT 58.798 39.130 0.00 0.00 35.31 1.28
1817 2362 3.609853 AGATCAAGTCTGCCGCAAATAA 58.390 40.909 0.00 0.00 35.31 1.40
1854 2399 6.459670 AACTGAATCAGCATGCAAATATCA 57.540 33.333 21.98 15.33 34.37 2.15
1855 2400 5.919141 GGAACTGAATCAGCATGCAAATATC 59.081 40.000 21.98 11.54 34.37 1.63
1856 2401 5.597182 AGGAACTGAATCAGCATGCAAATAT 59.403 36.000 21.98 4.35 37.18 1.28
1925 2525 7.907389 TGTTTGCCATAAACATAACCCAATAA 58.093 30.769 1.42 0.00 35.45 1.40
1945 2547 4.168014 ACACGCATCATAAGCATTGTTTG 58.832 39.130 0.00 0.00 0.00 2.93
1948 2550 6.223120 TCTATACACGCATCATAAGCATTGT 58.777 36.000 0.00 0.00 33.79 2.71
1980 2582 5.305585 TGGAAAACAGACATAGAAGTCCAC 58.694 41.667 0.00 0.00 39.34 4.02
2007 2609 6.270000 TCTCCATATACTGTAACTGGGAATGG 59.730 42.308 15.12 9.33 34.07 3.16
2102 2704 0.320771 ACCAAAGTAGCACGCAGAGG 60.321 55.000 0.00 0.00 0.00 3.69
2135 2737 4.402056 AACCTGGTCTACCAATATGACG 57.598 45.455 0.00 0.00 46.97 4.35
2168 2770 5.710099 TGATGCCTTTAGTTTAAGAAGTGGG 59.290 40.000 0.00 0.00 0.00 4.61
2222 2824 4.394300 AGCTGCAATTAGAGCACACTAAAG 59.606 41.667 1.02 0.00 37.02 1.85
2293 2895 5.185442 TGCAAGCAACATATCAGGAAAATGA 59.815 36.000 0.00 0.00 0.00 2.57
2330 2932 2.194271 GCGATACAACCTCCGAAGAAG 58.806 52.381 0.00 0.00 0.00 2.85
2344 2946 3.065233 TCATGTCAATTGGCTTGCGATAC 59.935 43.478 18.42 1.74 34.66 2.24
2389 2991 2.093973 ACAGTTCTAGATGCCCAAGACG 60.094 50.000 0.00 0.00 0.00 4.18
2454 3056 6.128715 CGCTACAATTAGAATGCCAGTAGATG 60.129 42.308 0.00 0.00 31.56 2.90
2467 3069 7.681939 AAAAAGAATGACCGCTACAATTAGA 57.318 32.000 0.00 0.00 0.00 2.10
2562 3166 4.761739 CCTCTAGCATGAAGACCACAAAAA 59.238 41.667 0.00 0.00 0.00 1.94
2717 3321 6.879276 AATACGACAGACAGCTAGCTATTA 57.121 37.500 18.86 0.00 0.00 0.98
2725 3329 3.006967 AGGACAAAATACGACAGACAGCT 59.993 43.478 0.00 0.00 0.00 4.24
2726 3330 3.326747 AGGACAAAATACGACAGACAGC 58.673 45.455 0.00 0.00 0.00 4.40
2728 3332 4.866508 AGAGGACAAAATACGACAGACA 57.133 40.909 0.00 0.00 0.00 3.41
2729 3333 5.694910 TGAAAGAGGACAAAATACGACAGAC 59.305 40.000 0.00 0.00 0.00 3.51
2733 3337 6.018180 ACAACTGAAAGAGGACAAAATACGAC 60.018 38.462 0.00 0.00 37.43 4.34
2753 3357 5.779922 TGATAGTTCAGTTTCGCTACAACT 58.220 37.500 0.00 0.00 35.16 3.16
2755 3359 6.631016 AGATGATAGTTCAGTTTCGCTACAA 58.369 36.000 0.00 0.00 34.73 2.41
2765 3369 6.212388 ACCTGACAGAAAGATGATAGTTCAGT 59.788 38.462 3.32 0.00 34.73 3.41
2773 3377 7.094032 GGAAATTCAACCTGACAGAAAGATGAT 60.094 37.037 3.32 0.00 0.00 2.45
2928 3532 7.880713 GGGGGAAATAACACATAAACAAACATT 59.119 33.333 0.00 0.00 0.00 2.71
3260 3865 7.095271 GGCTGAATGAGAATAATCTGCTTAGAC 60.095 40.741 0.00 0.00 35.54 2.59
3308 3913 1.937546 GCCAAAATGCTCGTCCTGGG 61.938 60.000 0.00 0.00 0.00 4.45
3387 3992 1.121407 TCACCACTGTCTCCACTGGG 61.121 60.000 0.00 0.00 31.02 4.45
3396 4001 0.596600 TCGCTTCGTTCACCACTGTC 60.597 55.000 0.00 0.00 0.00 3.51
3522 4127 2.143122 GTCGAGAATTTCTGCACCACA 58.857 47.619 3.03 0.00 0.00 4.17
3555 4160 2.497675 GACATAGCTGTTCAGGAGGTCA 59.502 50.000 0.00 0.00 35.14 4.02
3682 4288 5.674525 TCAAAGTCAGAACTCACAAGTCAT 58.325 37.500 0.00 0.00 33.48 3.06
3729 4335 1.674441 CACCATGCAAGACCATGCTAG 59.326 52.381 0.00 0.00 46.54 3.42
3770 4376 3.960571 AGGAAATCAGTTCATCACAGGG 58.039 45.455 0.00 0.00 38.06 4.45
3790 4397 5.439828 CGAGAGAATACAGAGATCGACAAG 58.560 45.833 0.00 0.00 0.00 3.16
3791 4398 4.273724 CCGAGAGAATACAGAGATCGACAA 59.726 45.833 0.00 0.00 0.00 3.18
3801 4408 5.514559 CGCATGAATATCCGAGAGAATACAG 59.485 44.000 0.00 0.00 0.00 2.74
3827 4434 4.155280 TCAAACCCTTATTTACGAGCTTGC 59.845 41.667 0.00 0.00 0.00 4.01
3835 4442 4.325972 TGACCGGTCAAACCCTTATTTAC 58.674 43.478 34.60 3.09 36.53 2.01
3873 4480 1.265365 GCTTGCAAGTGAGAACTGACC 59.735 52.381 26.55 2.58 0.00 4.02
3874 4481 1.070309 CGCTTGCAAGTGAGAACTGAC 60.070 52.381 31.64 8.56 38.80 3.51
3895 4502 6.092944 TCAAACATCGTTTCTTAACACAGTGT 59.907 34.615 0.00 0.00 33.75 3.55
3908 4515 6.748132 ACAAGATTCCATTCAAACATCGTTT 58.252 32.000 0.00 0.00 0.00 3.60
3968 4575 4.219115 TCACAGAATTAACAAAAGGGGCA 58.781 39.130 0.00 0.00 0.00 5.36
3986 4593 4.920999 TGGATGAATCACAATCCTTCACA 58.079 39.130 3.39 0.00 32.16 3.58
3998 4605 0.988063 TCCGGTGGTTGGATGAATCA 59.012 50.000 0.00 0.00 0.00 2.57
4016 4623 2.611518 CACAGAGACCGTGGAGAAATC 58.388 52.381 0.00 0.00 0.00 2.17
4032 4640 1.067425 TCCCGAAACGTATGACCACAG 60.067 52.381 0.00 0.00 0.00 3.66
4033 4641 0.967662 TCCCGAAACGTATGACCACA 59.032 50.000 0.00 0.00 0.00 4.17
4034 4642 2.083167 TTCCCGAAACGTATGACCAC 57.917 50.000 0.00 0.00 0.00 4.16
4035 4643 2.835580 TTTCCCGAAACGTATGACCA 57.164 45.000 0.00 0.00 0.00 4.02
4036 4644 3.004862 ACATTTCCCGAAACGTATGACC 58.995 45.455 0.00 0.00 32.51 4.02
4037 4645 4.673534 AACATTTCCCGAAACGTATGAC 57.326 40.909 0.00 0.00 32.51 3.06
4038 4646 4.871557 CCTAACATTTCCCGAAACGTATGA 59.128 41.667 0.00 0.00 32.51 2.15
4048 4657 3.343617 ACACACATCCTAACATTTCCCG 58.656 45.455 0.00 0.00 0.00 5.14
4059 4668 3.617531 GCAGTAGCAGTTACACACATCCT 60.618 47.826 0.00 0.00 41.58 3.24
4060 4669 2.673368 GCAGTAGCAGTTACACACATCC 59.327 50.000 0.00 0.00 41.58 3.51
4061 4670 3.589988 AGCAGTAGCAGTTACACACATC 58.410 45.455 0.00 0.00 45.49 3.06
4062 4671 3.685139 AGCAGTAGCAGTTACACACAT 57.315 42.857 0.00 0.00 45.49 3.21
4063 4672 3.130633 CAAGCAGTAGCAGTTACACACA 58.869 45.455 0.00 0.00 45.49 3.72
4064 4673 2.480419 CCAAGCAGTAGCAGTTACACAC 59.520 50.000 0.00 0.00 45.49 3.82
4065 4674 2.367241 TCCAAGCAGTAGCAGTTACACA 59.633 45.455 0.00 0.00 45.49 3.72
4066 4675 3.040147 TCCAAGCAGTAGCAGTTACAC 57.960 47.619 0.00 0.00 45.49 2.90
4067 4676 3.007940 ACATCCAAGCAGTAGCAGTTACA 59.992 43.478 0.00 0.00 45.49 2.41
4068 4677 3.372206 CACATCCAAGCAGTAGCAGTTAC 59.628 47.826 0.00 0.00 45.49 2.50
4069 4678 3.599343 CACATCCAAGCAGTAGCAGTTA 58.401 45.455 0.00 0.00 45.49 2.24
4070 4679 2.430465 CACATCCAAGCAGTAGCAGTT 58.570 47.619 0.00 0.00 45.49 3.16
4071 4680 1.339438 CCACATCCAAGCAGTAGCAGT 60.339 52.381 0.00 0.00 45.49 4.40
4072 4681 1.065926 TCCACATCCAAGCAGTAGCAG 60.066 52.381 0.00 0.00 45.49 4.24
4073 4682 0.983467 TCCACATCCAAGCAGTAGCA 59.017 50.000 0.00 0.00 45.49 3.49
4074 4683 2.113860 TTCCACATCCAAGCAGTAGC 57.886 50.000 0.00 0.00 42.56 3.58
4075 4684 3.411446 TGTTTCCACATCCAAGCAGTAG 58.589 45.455 0.00 0.00 0.00 2.57
4076 4685 3.500448 TGTTTCCACATCCAAGCAGTA 57.500 42.857 0.00 0.00 0.00 2.74
4077 4686 2.363306 TGTTTCCACATCCAAGCAGT 57.637 45.000 0.00 0.00 0.00 4.40
4078 4687 3.293311 CTTGTTTCCACATCCAAGCAG 57.707 47.619 0.00 0.00 31.06 4.24
4082 4691 3.006752 GGATTGCTTGTTTCCACATCCAA 59.993 43.478 0.00 0.00 30.25 3.53
4085 4694 2.487762 TCGGATTGCTTGTTTCCACATC 59.512 45.455 0.00 0.00 31.06 3.06
4089 4698 3.680490 TGTATCGGATTGCTTGTTTCCA 58.320 40.909 0.00 0.00 0.00 3.53
4091 4700 5.640732 ACATTGTATCGGATTGCTTGTTTC 58.359 37.500 0.00 0.00 0.00 2.78
4104 4713 5.698832 ACACACCATTTTGACATTGTATCG 58.301 37.500 0.00 0.00 0.00 2.92
4106 4715 5.538053 TGGACACACCATTTTGACATTGTAT 59.462 36.000 0.00 0.00 44.64 2.29
4128 4739 1.890876 TTGACACCGGATCAGTTTGG 58.109 50.000 9.46 0.00 0.00 3.28
4140 4751 1.490621 GCACACAGCATTTTGACACC 58.509 50.000 0.00 0.00 44.79 4.16
4166 4777 4.142752 GGCACCCGTCATAGTTTAACTTTC 60.143 45.833 1.94 0.00 0.00 2.62
4234 4846 3.774066 CGTTGACTATGCACATCTGAGA 58.226 45.455 0.00 0.00 0.00 3.27
4238 4850 1.280982 CGCGTTGACTATGCACATCT 58.719 50.000 0.00 0.00 38.77 2.90
4242 4854 0.094730 GAACCGCGTTGACTATGCAC 59.905 55.000 4.92 0.00 38.77 4.57
4247 4859 0.956633 AGACAGAACCGCGTTGACTA 59.043 50.000 4.92 0.00 0.00 2.59
4248 4861 0.597637 CAGACAGAACCGCGTTGACT 60.598 55.000 4.92 0.93 0.00 3.41
4262 4875 1.771073 CGTTTTGCCGCTGACAGACA 61.771 55.000 6.65 0.00 0.00 3.41
4263 4876 1.082756 CGTTTTGCCGCTGACAGAC 60.083 57.895 6.65 0.00 0.00 3.51
4368 4982 2.596346 TGCAGGAATTCACATTGTGGT 58.404 42.857 16.46 3.63 33.87 4.16
4373 4988 4.510038 GTGAGTTGCAGGAATTCACATT 57.490 40.909 20.93 0.00 45.91 2.71
4387 5002 4.717629 TCGCTCGCCGGTGAGTTG 62.718 66.667 37.94 30.89 38.28 3.16
4396 5011 2.470801 TTTGGCATTGTTCGCTCGCC 62.471 55.000 0.00 0.00 43.28 5.54
4397 5012 0.456653 ATTTGGCATTGTTCGCTCGC 60.457 50.000 0.00 0.00 0.00 5.03
4398 5013 1.261989 CATTTGGCATTGTTCGCTCG 58.738 50.000 0.00 0.00 0.00 5.03
4399 5014 0.994263 GCATTTGGCATTGTTCGCTC 59.006 50.000 0.00 0.00 43.97 5.03
4410 5032 0.675633 AACACTGTCAGGCATTTGGC 59.324 50.000 4.53 0.00 43.74 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.