Multiple sequence alignment - TraesCS2D01G449800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G449800 chr2D 100.000 1844 0 0 1 1844 559304964 559306807 0.000000e+00 3406
1 TraesCS2D01G449800 chr2D 100.000 1296 0 0 2153 3448 559307116 559308411 0.000000e+00 2394
2 TraesCS2D01G449800 chr2D 83.908 783 74 19 1 746 559212212 559212979 0.000000e+00 701
3 TraesCS2D01G449800 chr2D 99.200 375 3 0 3074 3448 620665161 620665535 0.000000e+00 676
4 TraesCS2D01G449800 chr2A 94.069 961 54 1 887 1844 699854105 699855065 0.000000e+00 1456
5 TraesCS2D01G449800 chr2A 95.027 925 36 6 2153 3073 699855084 699856002 0.000000e+00 1445
6 TraesCS2D01G449800 chr2A 93.295 865 42 7 1 852 699853243 699854104 0.000000e+00 1262
7 TraesCS2D01G449800 chr2A 84.674 783 66 21 1 746 699799223 699799988 0.000000e+00 732
8 TraesCS2D01G449800 chr2A 97.067 375 6 1 3074 3448 14708608 14708239 8.120000e-176 627
9 TraesCS2D01G449800 chr2A 96.800 375 7 1 3074 3448 14525945 14525576 3.780000e-174 621
10 TraesCS2D01G449800 chr2B 90.979 521 37 4 1 512 668182503 668183022 0.000000e+00 693
11 TraesCS2D01G449800 chr2B 96.139 259 9 1 507 764 668224305 668224563 4.110000e-114 422
12 TraesCS2D01G449800 chr2B 87.252 353 39 5 2725 3073 668375541 668375891 6.930000e-107 398
13 TraesCS2D01G449800 chr2B 90.278 288 23 2 1562 1844 668335407 668335694 4.200000e-99 372
14 TraesCS2D01G449800 chr2B 90.000 210 18 3 2523 2730 668361640 668361848 5.670000e-68 268
15 TraesCS2D01G449800 chrUn 99.469 377 2 0 3072 3448 45884534 45884910 0.000000e+00 686
16 TraesCS2D01G449800 chr3D 99.200 375 3 0 3074 3448 376812091 376812465 0.000000e+00 676
17 TraesCS2D01G449800 chr5A 84.915 590 80 5 1255 1844 401509975 401509395 3.830000e-164 588
18 TraesCS2D01G449800 chr3B 90.667 375 23 5 3074 3448 787790304 787789942 4.000000e-134 488
19 TraesCS2D01G449800 chr3B 90.515 369 23 5 3080 3448 628021530 628021886 8.660000e-131 477
20 TraesCS2D01G449800 chr1B 93.272 327 12 6 3124 3448 495708384 495708066 1.120000e-129 473
21 TraesCS2D01G449800 chr1B 89.572 374 24 7 3077 3448 527995006 527994646 8.720000e-126 460


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G449800 chr2D 559304964 559308411 3447 False 2900.000000 3406 100.000000 1 3448 2 chr2D.!!$F3 3447
1 TraesCS2D01G449800 chr2D 559212212 559212979 767 False 701.000000 701 83.908000 1 746 1 chr2D.!!$F1 745
2 TraesCS2D01G449800 chr2A 699853243 699856002 2759 False 1387.666667 1456 94.130333 1 3073 3 chr2A.!!$F2 3072
3 TraesCS2D01G449800 chr2A 699799223 699799988 765 False 732.000000 732 84.674000 1 746 1 chr2A.!!$F1 745
4 TraesCS2D01G449800 chr2B 668182503 668183022 519 False 693.000000 693 90.979000 1 512 1 chr2B.!!$F1 511
5 TraesCS2D01G449800 chr5A 401509395 401509975 580 True 588.000000 588 84.915000 1255 1844 1 chr5A.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 921 0.694771 TTTGGAGGCTGTGCTCATCT 59.305 50.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 2717 0.039256 TCAAAATGCTGCTCCGTTGC 60.039 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 155 0.904865 TCGACAGCAGGAGGGTCAAT 60.905 55.000 0.00 0.00 0.00 2.57
191 195 2.174360 GGGGACTCGTACTGGTAACTT 58.826 52.381 0.00 0.00 37.61 2.66
273 279 4.400845 CGTTTCAGAGATCTAAACGTCGA 58.599 43.478 24.20 2.25 46.24 4.20
285 291 5.526115 TCTAAACGTCGAAACAGAACAGAT 58.474 37.500 0.00 0.00 0.00 2.90
305 318 5.479375 CAGATAATGGAAATTCATGAGGGGG 59.521 44.000 0.00 0.00 0.00 5.40
349 362 1.602327 AACGAGAAGGGGTACGAGCC 61.602 60.000 0.00 0.00 34.31 4.70
371 384 1.980772 CCCTTGGGCCTGCAAGAAG 60.981 63.158 19.89 9.43 34.07 2.85
676 729 2.216940 GCTTTTTCGTTTTGGCGTTACC 59.783 45.455 0.00 0.00 39.84 2.85
752 805 1.162698 GGGCCTAGTTTCCGTTTGTC 58.837 55.000 0.84 0.00 0.00 3.18
852 914 1.101049 ACACGGTTTTGGAGGCTGTG 61.101 55.000 0.00 0.00 43.11 3.66
853 915 2.193536 ACGGTTTTGGAGGCTGTGC 61.194 57.895 0.00 0.00 0.00 4.57
854 916 1.898574 CGGTTTTGGAGGCTGTGCT 60.899 57.895 0.00 0.00 0.00 4.40
855 917 1.856265 CGGTTTTGGAGGCTGTGCTC 61.856 60.000 0.00 0.00 0.00 4.26
856 918 0.823356 GGTTTTGGAGGCTGTGCTCA 60.823 55.000 0.00 0.00 0.00 4.26
857 919 1.251251 GTTTTGGAGGCTGTGCTCAT 58.749 50.000 0.00 0.00 0.00 2.90
858 920 1.200948 GTTTTGGAGGCTGTGCTCATC 59.799 52.381 0.00 0.00 0.00 2.92
859 921 0.694771 TTTGGAGGCTGTGCTCATCT 59.305 50.000 0.00 0.00 0.00 2.90
860 922 0.694771 TTGGAGGCTGTGCTCATCTT 59.305 50.000 0.00 0.00 0.00 2.40
861 923 1.571955 TGGAGGCTGTGCTCATCTTA 58.428 50.000 0.00 0.00 0.00 2.10
862 924 2.121948 TGGAGGCTGTGCTCATCTTAT 58.878 47.619 0.00 0.00 0.00 1.73
863 925 2.103771 TGGAGGCTGTGCTCATCTTATC 59.896 50.000 0.00 0.00 0.00 1.75
864 926 2.368221 GGAGGCTGTGCTCATCTTATCT 59.632 50.000 0.00 0.00 0.00 1.98
865 927 3.391965 GAGGCTGTGCTCATCTTATCTG 58.608 50.000 0.00 0.00 0.00 2.90
866 928 2.770802 AGGCTGTGCTCATCTTATCTGT 59.229 45.455 0.00 0.00 0.00 3.41
867 929 3.199508 AGGCTGTGCTCATCTTATCTGTT 59.800 43.478 0.00 0.00 0.00 3.16
868 930 3.559242 GGCTGTGCTCATCTTATCTGTTC 59.441 47.826 0.00 0.00 0.00 3.18
869 931 3.559242 GCTGTGCTCATCTTATCTGTTCC 59.441 47.826 0.00 0.00 0.00 3.62
870 932 4.125703 CTGTGCTCATCTTATCTGTTCCC 58.874 47.826 0.00 0.00 0.00 3.97
871 933 3.776969 TGTGCTCATCTTATCTGTTCCCT 59.223 43.478 0.00 0.00 0.00 4.20
872 934 4.962362 TGTGCTCATCTTATCTGTTCCCTA 59.038 41.667 0.00 0.00 0.00 3.53
873 935 5.163405 TGTGCTCATCTTATCTGTTCCCTAC 60.163 44.000 0.00 0.00 0.00 3.18
874 936 4.962362 TGCTCATCTTATCTGTTCCCTACA 59.038 41.667 0.00 0.00 34.95 2.74
875 937 5.604231 TGCTCATCTTATCTGTTCCCTACAT 59.396 40.000 0.00 0.00 35.85 2.29
876 938 6.782494 TGCTCATCTTATCTGTTCCCTACATA 59.218 38.462 0.00 0.00 35.85 2.29
877 939 7.455953 TGCTCATCTTATCTGTTCCCTACATAT 59.544 37.037 0.00 0.00 35.85 1.78
878 940 8.972127 GCTCATCTTATCTGTTCCCTACATATA 58.028 37.037 0.00 0.00 35.85 0.86
881 943 9.539825 CATCTTATCTGTTCCCTACATATATGC 57.460 37.037 12.79 0.00 35.85 3.14
882 944 7.772166 TCTTATCTGTTCCCTACATATATGCG 58.228 38.462 12.79 4.32 35.85 4.73
883 945 4.188247 TCTGTTCCCTACATATATGCGC 57.812 45.455 12.79 0.00 35.85 6.09
884 946 3.056107 TCTGTTCCCTACATATATGCGCC 60.056 47.826 12.79 0.00 35.85 6.53
885 947 2.635427 TGTTCCCTACATATATGCGCCA 59.365 45.455 12.79 0.00 0.00 5.69
890 952 4.009675 CCCTACATATATGCGCCAACAAT 58.990 43.478 12.79 0.00 0.00 2.71
893 955 2.622470 ACATATATGCGCCAACAATGCA 59.378 40.909 12.79 0.00 43.67 3.96
903 965 3.065233 CGCCAACAATGCAGAGCTATTAA 59.935 43.478 0.00 0.00 0.00 1.40
904 966 4.604976 GCCAACAATGCAGAGCTATTAAG 58.395 43.478 0.00 0.00 0.00 1.85
939 1004 1.069296 GTTTCTTGCTGCATGTACGCA 60.069 47.619 14.21 0.00 40.32 5.24
955 1020 2.417719 ACGCAATGGACTTGAAGACTC 58.582 47.619 0.00 0.00 36.97 3.36
958 1023 2.158449 GCAATGGACTTGAAGACTCGTG 59.842 50.000 0.00 0.00 36.97 4.35
971 1036 1.741145 GACTCGTGAGAAGAGGGAGAC 59.259 57.143 3.44 0.00 41.32 3.36
1027 1092 6.200097 GGAAGAGCTTGTTCTCGAGATATTTC 59.800 42.308 17.44 9.58 38.12 2.17
1071 1136 1.000283 CTGCGGTTCAAGTCTCTCAGT 60.000 52.381 0.00 0.00 0.00 3.41
1084 1149 0.835971 TCTCAGTAAGGCCTGGTGCA 60.836 55.000 5.69 0.00 43.89 4.57
1107 1172 0.255890 CCATCTCCGACCCCATGTTT 59.744 55.000 0.00 0.00 0.00 2.83
1119 1184 2.106511 CCCCATGTTTATCCGGAGTCAT 59.893 50.000 11.34 8.82 0.00 3.06
1127 1192 0.387202 ATCCGGAGTCATCTTGAGCG 59.613 55.000 11.34 0.00 0.00 5.03
1140 1205 0.250684 TTGAGCGCCAGAAACCATCA 60.251 50.000 2.29 0.00 0.00 3.07
1151 1216 3.889538 CAGAAACCATCATGGCTCATCAT 59.110 43.478 2.52 0.00 42.67 2.45
1181 1246 4.308899 CCTTGGACAGTACTATCGAAGG 57.691 50.000 24.84 24.84 42.22 3.46
1192 1257 2.025226 ACTATCGAAGGTGAGGAGTGGA 60.025 50.000 0.00 0.00 0.00 4.02
1214 1279 2.965147 CAACCACCTTCTCAACCCAAAT 59.035 45.455 0.00 0.00 0.00 2.32
1226 1291 0.988832 ACCCAAATCCGCTTCTACCA 59.011 50.000 0.00 0.00 0.00 3.25
1251 1316 3.524346 GCTAGGGCTAGGTGTCTCT 57.476 57.895 0.00 0.00 33.87 3.10
1261 1326 3.702045 GCTAGGTGTCTCTGATACAAGGT 59.298 47.826 0.00 0.00 0.00 3.50
1281 1346 3.548818 GGTTGATGCACACAACTGACTTC 60.549 47.826 26.43 13.00 44.50 3.01
1284 1349 0.546122 TGCACACAACTGACTTCCCT 59.454 50.000 0.00 0.00 0.00 4.20
1287 1352 1.140852 CACACAACTGACTTCCCTGGA 59.859 52.381 0.00 0.00 0.00 3.86
1293 1358 4.141158 ACAACTGACTTCCCTGGAGAATTT 60.141 41.667 0.00 0.00 0.00 1.82
1321 1386 1.303561 TCTCACATTGCCCACTGCC 60.304 57.895 0.00 0.00 40.16 4.85
1353 1418 2.488347 GCTCTTCCCTACCAACACCAAA 60.488 50.000 0.00 0.00 0.00 3.28
1360 1425 3.071892 CCCTACCAACACCAAACTCTACA 59.928 47.826 0.00 0.00 0.00 2.74
1399 1464 1.609580 GGGACACAATGACGTTGCCTA 60.610 52.381 7.33 0.00 41.69 3.93
1428 1493 1.753956 GCACCAAAACGCAGTACAAG 58.246 50.000 0.00 0.00 45.00 3.16
1472 1537 2.270352 GGTTTGGACCATCACACTGA 57.730 50.000 0.00 0.00 45.77 3.41
1521 1586 1.480137 CGCTCCAAAGATCCTCTCACT 59.520 52.381 0.00 0.00 0.00 3.41
1698 1763 3.873361 TCCATCTTGAGCATGATCGAAAC 59.127 43.478 6.46 0.00 0.00 2.78
1733 1798 0.820871 AGCCTGGAAGATGAGACGTC 59.179 55.000 7.70 7.70 34.07 4.34
1778 1843 0.795698 TTGTCATTGGATCGTGCACG 59.204 50.000 32.76 32.76 41.45 5.34
2179 2244 9.778741 TTGGATATTGGTTGAAGATGATACTAC 57.221 33.333 0.00 0.00 0.00 2.73
2233 2298 6.205658 TCTCTGTGTATATCAGATCTGGTTCG 59.794 42.308 22.42 0.00 40.46 3.95
2255 2320 3.091545 GCCAATGTCATTTCTTCCAGGA 58.908 45.455 0.00 0.00 0.00 3.86
2293 2358 2.236395 AGTCTGGTCCCAATTTCTACCG 59.764 50.000 0.00 0.00 34.60 4.02
2294 2359 1.065709 TCTGGTCCCAATTTCTACCGC 60.066 52.381 0.00 0.00 34.60 5.68
2309 2374 2.179267 CGCTACGAGCTGCAGACA 59.821 61.111 20.43 0.00 39.60 3.41
2322 2387 1.362406 GCAGACAGCTTCTAACCCGC 61.362 60.000 0.00 0.00 41.15 6.13
2366 2431 1.066605 GGGCTAAGATACAAGCGTCGA 59.933 52.381 0.00 0.00 39.71 4.20
2376 2441 1.663702 AAGCGTCGAAGGGAACACG 60.664 57.895 0.00 0.00 35.32 4.49
2385 2450 2.163010 CGAAGGGAACACGCTACTAAGA 59.837 50.000 0.00 0.00 0.00 2.10
2425 2490 4.467198 ACGTAACTCCCTACATGGAAAG 57.533 45.455 0.00 0.00 38.35 2.62
2428 2493 4.159879 CGTAACTCCCTACATGGAAAGTCT 59.840 45.833 0.00 0.00 38.35 3.24
2469 2534 1.047801 GGCCCAACTTTGATGGTTGT 58.952 50.000 0.00 0.00 41.47 3.32
2527 2592 9.403583 TCTTTACCTAATGTGAAAGTCTTGTTT 57.596 29.630 0.00 0.00 32.05 2.83
2530 2595 7.639113 ACCTAATGTGAAAGTCTTGTTTTCA 57.361 32.000 0.00 0.00 41.00 2.69
2531 2596 8.062065 ACCTAATGTGAAAGTCTTGTTTTCAA 57.938 30.769 2.35 0.00 43.76 2.69
2546 2611 9.695884 TCTTGTTTTCAAAATTGCGATAAAAAC 57.304 25.926 14.20 14.20 39.47 2.43
2665 2732 1.755179 AATAGCAACGGAGCAGCATT 58.245 45.000 0.00 0.00 36.85 3.56
2670 2737 1.403249 GCAACGGAGCAGCATTTTGAT 60.403 47.619 0.00 0.00 0.00 2.57
2699 2766 6.978674 TGAACCATAACACCAAACCATAAA 57.021 33.333 0.00 0.00 0.00 1.40
2735 2802 6.976934 AAAAAGGTGGTGACTTGTATGAAT 57.023 33.333 0.00 0.00 0.00 2.57
2761 2828 2.663602 CTCTTCAGGTGAAATCGTGTCG 59.336 50.000 0.00 0.00 33.07 4.35
2767 2834 4.119862 CAGGTGAAATCGTGTCGGATTAT 58.880 43.478 0.00 0.00 35.65 1.28
2780 2847 5.005107 GTGTCGGATTATCGTACAAAGGTTC 59.995 44.000 0.00 0.00 0.00 3.62
2860 2929 4.399219 TCGGATTTAACCCACACATTCAA 58.601 39.130 0.00 0.00 0.00 2.69
3048 3117 2.476997 GTCGAAGTTTTCTCTCCTGCAC 59.523 50.000 0.00 0.00 0.00 4.57
3054 3123 3.840666 AGTTTTCTCTCCTGCACCTATCA 59.159 43.478 0.00 0.00 0.00 2.15
3057 3126 1.117994 CTCTCCTGCACCTATCAGCA 58.882 55.000 0.00 0.00 39.25 4.41
3073 3142 2.551270 CAGTGCGCGGTGAGAAAC 59.449 61.111 8.83 0.00 0.00 2.78
3074 3143 2.108157 AGTGCGCGGTGAGAAACA 59.892 55.556 8.83 0.00 0.00 2.83
3075 3144 1.956170 AGTGCGCGGTGAGAAACAG 60.956 57.895 8.83 0.00 0.00 3.16
3076 3145 2.664851 TGCGCGGTGAGAAACAGG 60.665 61.111 8.83 0.00 0.00 4.00
3077 3146 3.423154 GCGCGGTGAGAAACAGGG 61.423 66.667 8.83 0.00 39.44 4.45
3078 3147 2.742372 CGCGGTGAGAAACAGGGG 60.742 66.667 0.00 0.00 34.04 4.79
3079 3148 3.056328 GCGGTGAGAAACAGGGGC 61.056 66.667 0.00 0.00 0.00 5.80
3080 3149 2.742372 CGGTGAGAAACAGGGGCG 60.742 66.667 0.00 0.00 0.00 6.13
3081 3150 2.359975 GGTGAGAAACAGGGGCGG 60.360 66.667 0.00 0.00 0.00 6.13
3082 3151 2.747686 GTGAGAAACAGGGGCGGA 59.252 61.111 0.00 0.00 0.00 5.54
3083 3152 1.376037 GTGAGAAACAGGGGCGGAG 60.376 63.158 0.00 0.00 0.00 4.63
3097 3166 3.558674 CGGAGCCAGGATTTGAACT 57.441 52.632 0.00 0.00 0.00 3.01
3098 3167 1.826385 CGGAGCCAGGATTTGAACTT 58.174 50.000 0.00 0.00 0.00 2.66
3099 3168 1.470098 CGGAGCCAGGATTTGAACTTG 59.530 52.381 0.00 0.00 0.00 3.16
3100 3169 2.795329 GGAGCCAGGATTTGAACTTGA 58.205 47.619 0.00 0.00 0.00 3.02
3101 3170 2.751806 GGAGCCAGGATTTGAACTTGAG 59.248 50.000 0.00 0.00 0.00 3.02
3102 3171 3.560025 GGAGCCAGGATTTGAACTTGAGA 60.560 47.826 0.00 0.00 0.00 3.27
3103 3172 3.683802 AGCCAGGATTTGAACTTGAGAG 58.316 45.455 0.00 0.00 0.00 3.20
3104 3173 2.751806 GCCAGGATTTGAACTTGAGAGG 59.248 50.000 0.00 0.00 0.00 3.69
3105 3174 3.350833 CCAGGATTTGAACTTGAGAGGG 58.649 50.000 0.00 0.00 0.00 4.30
3106 3175 3.350833 CAGGATTTGAACTTGAGAGGGG 58.649 50.000 0.00 0.00 0.00 4.79
3107 3176 2.095461 GGATTTGAACTTGAGAGGGGC 58.905 52.381 0.00 0.00 0.00 5.80
3108 3177 1.740025 GATTTGAACTTGAGAGGGGCG 59.260 52.381 0.00 0.00 0.00 6.13
3109 3178 0.762418 TTTGAACTTGAGAGGGGCGA 59.238 50.000 0.00 0.00 0.00 5.54
3110 3179 0.762418 TTGAACTTGAGAGGGGCGAA 59.238 50.000 0.00 0.00 0.00 4.70
3111 3180 0.762418 TGAACTTGAGAGGGGCGAAA 59.238 50.000 0.00 0.00 0.00 3.46
3112 3181 1.142060 TGAACTTGAGAGGGGCGAAAA 59.858 47.619 0.00 0.00 0.00 2.29
3113 3182 1.807142 GAACTTGAGAGGGGCGAAAAG 59.193 52.381 0.00 0.00 0.00 2.27
3125 3194 2.634982 GCGAAAAGCCAATGATCACA 57.365 45.000 0.00 0.00 40.81 3.58
3126 3195 2.253603 GCGAAAAGCCAATGATCACAC 58.746 47.619 0.00 0.00 40.81 3.82
3127 3196 2.351641 GCGAAAAGCCAATGATCACACA 60.352 45.455 0.00 0.00 40.81 3.72
3128 3197 3.856638 GCGAAAAGCCAATGATCACACAA 60.857 43.478 0.00 0.00 40.81 3.33
3129 3198 3.916172 CGAAAAGCCAATGATCACACAAG 59.084 43.478 0.00 0.00 0.00 3.16
3130 3199 4.320421 CGAAAAGCCAATGATCACACAAGA 60.320 41.667 0.00 0.00 0.00 3.02
3131 3200 4.778534 AAAGCCAATGATCACACAAGAG 57.221 40.909 0.00 0.00 0.00 2.85
3132 3201 3.708403 AGCCAATGATCACACAAGAGA 57.292 42.857 0.00 0.00 0.00 3.10
3133 3202 3.341823 AGCCAATGATCACACAAGAGAC 58.658 45.455 0.00 0.00 0.00 3.36
3134 3203 3.076621 GCCAATGATCACACAAGAGACA 58.923 45.455 0.00 0.00 0.00 3.41
3135 3204 3.503363 GCCAATGATCACACAAGAGACAA 59.497 43.478 0.00 0.00 0.00 3.18
3136 3205 4.022935 GCCAATGATCACACAAGAGACAAA 60.023 41.667 0.00 0.00 0.00 2.83
3137 3206 5.507817 GCCAATGATCACACAAGAGACAAAA 60.508 40.000 0.00 0.00 0.00 2.44
3138 3207 5.916883 CCAATGATCACACAAGAGACAAAAC 59.083 40.000 0.00 0.00 0.00 2.43
3139 3208 6.459985 CCAATGATCACACAAGAGACAAAACA 60.460 38.462 0.00 0.00 0.00 2.83
3140 3209 6.889301 ATGATCACACAAGAGACAAAACAT 57.111 33.333 0.00 0.00 0.00 2.71
3141 3210 6.304356 TGATCACACAAGAGACAAAACATC 57.696 37.500 0.00 0.00 0.00 3.06
3142 3211 5.821995 TGATCACACAAGAGACAAAACATCA 59.178 36.000 0.00 0.00 0.00 3.07
3143 3212 5.484173 TCACACAAGAGACAAAACATCAC 57.516 39.130 0.00 0.00 0.00 3.06
3144 3213 4.033932 TCACACAAGAGACAAAACATCACG 59.966 41.667 0.00 0.00 0.00 4.35
3145 3214 3.242739 ACACAAGAGACAAAACATCACGC 60.243 43.478 0.00 0.00 0.00 5.34
3146 3215 3.002656 CACAAGAGACAAAACATCACGCT 59.997 43.478 0.00 0.00 0.00 5.07
3147 3216 3.002656 ACAAGAGACAAAACATCACGCTG 59.997 43.478 0.00 0.00 0.00 5.18
3148 3217 2.146342 AGAGACAAAACATCACGCTGG 58.854 47.619 0.00 0.00 0.00 4.85
3149 3218 0.593128 AGACAAAACATCACGCTGGC 59.407 50.000 0.00 0.00 0.00 4.85
3150 3219 0.387239 GACAAAACATCACGCTGGCC 60.387 55.000 0.00 0.00 0.00 5.36
3151 3220 0.823356 ACAAAACATCACGCTGGCCT 60.823 50.000 3.32 0.00 0.00 5.19
3152 3221 0.314935 CAAAACATCACGCTGGCCTT 59.685 50.000 3.32 0.00 0.00 4.35
3153 3222 0.314935 AAAACATCACGCTGGCCTTG 59.685 50.000 3.32 0.00 0.00 3.61
3154 3223 0.537143 AAACATCACGCTGGCCTTGA 60.537 50.000 3.32 1.47 0.00 3.02
3155 3224 0.322816 AACATCACGCTGGCCTTGAT 60.323 50.000 3.32 4.06 0.00 2.57
3156 3225 1.725665 CATCACGCTGGCCTTGATG 59.274 57.895 17.25 17.25 40.42 3.07
3157 3226 1.028330 CATCACGCTGGCCTTGATGT 61.028 55.000 20.34 8.22 41.11 3.06
3158 3227 0.745845 ATCACGCTGGCCTTGATGTC 60.746 55.000 3.32 0.00 0.00 3.06
3159 3228 1.672030 CACGCTGGCCTTGATGTCA 60.672 57.895 3.32 0.00 0.00 3.58
3160 3229 1.073025 ACGCTGGCCTTGATGTCAA 59.927 52.632 3.32 0.00 0.00 3.18
3161 3230 0.322816 ACGCTGGCCTTGATGTCAAT 60.323 50.000 3.32 0.00 35.02 2.57
3162 3231 0.099968 CGCTGGCCTTGATGTCAATG 59.900 55.000 3.32 0.00 35.02 2.82
3163 3232 0.179119 GCTGGCCTTGATGTCAATGC 60.179 55.000 3.32 12.67 43.62 3.56
3164 3233 1.179152 CTGGCCTTGATGTCAATGCA 58.821 50.000 19.66 0.00 45.30 3.96
3165 3234 1.754803 CTGGCCTTGATGTCAATGCAT 59.245 47.619 19.66 0.00 45.30 3.96
3166 3235 2.953648 CTGGCCTTGATGTCAATGCATA 59.046 45.455 19.66 10.38 45.30 3.14
3167 3236 3.568443 TGGCCTTGATGTCAATGCATAT 58.432 40.909 19.66 0.00 45.30 1.78
3168 3237 4.727677 TGGCCTTGATGTCAATGCATATA 58.272 39.130 19.66 5.41 45.30 0.86
3169 3238 4.520111 TGGCCTTGATGTCAATGCATATAC 59.480 41.667 19.66 1.60 45.30 1.47
3170 3239 4.520111 GGCCTTGATGTCAATGCATATACA 59.480 41.667 19.66 14.39 45.30 2.29
3171 3240 5.009911 GGCCTTGATGTCAATGCATATACAA 59.990 40.000 19.66 8.90 45.30 2.41
3172 3241 6.461370 GGCCTTGATGTCAATGCATATACAAA 60.461 38.462 19.66 7.76 45.30 2.83
3173 3242 7.149973 GCCTTGATGTCAATGCATATACAAAT 58.850 34.615 15.61 3.39 43.74 2.32
3174 3243 8.298854 GCCTTGATGTCAATGCATATACAAATA 58.701 33.333 15.61 5.29 43.74 1.40
3253 3322 7.523293 AAATTGAGTTGTATGATCACCAACA 57.477 32.000 28.32 18.08 40.64 3.33
3254 3323 7.707624 AATTGAGTTGTATGATCACCAACAT 57.292 32.000 28.32 18.92 40.64 2.71
3255 3324 6.741992 TTGAGTTGTATGATCACCAACATC 57.258 37.500 28.32 23.35 40.64 3.06
3256 3325 5.185454 TGAGTTGTATGATCACCAACATCC 58.815 41.667 28.32 20.61 40.64 3.51
3257 3326 5.178096 AGTTGTATGATCACCAACATCCA 57.822 39.130 28.32 7.69 40.64 3.41
3258 3327 5.569355 AGTTGTATGATCACCAACATCCAA 58.431 37.500 28.32 10.25 40.64 3.53
3259 3328 5.415701 AGTTGTATGATCACCAACATCCAAC 59.584 40.000 28.32 17.91 40.79 3.77
3260 3329 4.916183 TGTATGATCACCAACATCCAACA 58.084 39.130 0.00 0.00 0.00 3.33
3261 3330 5.320277 TGTATGATCACCAACATCCAACAA 58.680 37.500 0.00 0.00 0.00 2.83
3262 3331 5.415389 TGTATGATCACCAACATCCAACAAG 59.585 40.000 0.00 0.00 0.00 3.16
3263 3332 3.831323 TGATCACCAACATCCAACAAGT 58.169 40.909 0.00 0.00 0.00 3.16
3264 3333 4.214310 TGATCACCAACATCCAACAAGTT 58.786 39.130 0.00 0.00 0.00 2.66
3265 3334 4.037803 TGATCACCAACATCCAACAAGTTG 59.962 41.667 0.00 0.00 41.61 3.16
3266 3335 3.625853 TCACCAACATCCAACAAGTTGA 58.374 40.909 10.54 1.68 43.93 3.18
3267 3336 4.214310 TCACCAACATCCAACAAGTTGAT 58.786 39.130 10.54 0.00 43.93 2.57
3268 3337 4.648762 TCACCAACATCCAACAAGTTGATT 59.351 37.500 10.54 0.00 43.93 2.57
3269 3338 5.830457 TCACCAACATCCAACAAGTTGATTA 59.170 36.000 10.54 0.55 43.93 1.75
3270 3339 6.493115 TCACCAACATCCAACAAGTTGATTAT 59.507 34.615 10.54 2.75 43.93 1.28
3271 3340 6.808212 CACCAACATCCAACAAGTTGATTATC 59.192 38.462 10.54 0.00 43.93 1.75
3272 3341 6.721208 ACCAACATCCAACAAGTTGATTATCT 59.279 34.615 10.54 0.00 43.93 1.98
3273 3342 7.094205 ACCAACATCCAACAAGTTGATTATCTC 60.094 37.037 10.54 0.00 43.93 2.75
3274 3343 7.094248 CCAACATCCAACAAGTTGATTATCTCA 60.094 37.037 10.54 0.00 43.93 3.27
3275 3344 8.464404 CAACATCCAACAAGTTGATTATCTCAT 58.536 33.333 10.54 0.00 43.93 2.90
3276 3345 8.218338 ACATCCAACAAGTTGATTATCTCATC 57.782 34.615 10.54 0.00 42.93 2.92
3277 3346 8.051535 ACATCCAACAAGTTGATTATCTCATCT 58.948 33.333 10.54 0.00 42.93 2.90
3278 3347 7.854557 TCCAACAAGTTGATTATCTCATCTG 57.145 36.000 10.54 0.00 42.93 2.90
3279 3348 7.623630 TCCAACAAGTTGATTATCTCATCTGA 58.376 34.615 10.54 0.00 42.93 3.27
3280 3349 8.270030 TCCAACAAGTTGATTATCTCATCTGAT 58.730 33.333 10.54 0.00 42.93 2.90
3281 3350 8.557864 CCAACAAGTTGATTATCTCATCTGATC 58.442 37.037 10.54 0.00 42.93 2.92
3282 3351 9.327628 CAACAAGTTGATTATCTCATCTGATCT 57.672 33.333 10.54 0.00 42.93 2.75
3283 3352 9.902684 AACAAGTTGATTATCTCATCTGATCTT 57.097 29.630 10.54 0.00 34.76 2.40
3284 3353 9.902684 ACAAGTTGATTATCTCATCTGATCTTT 57.097 29.630 10.54 0.00 34.76 2.52
3289 3358 9.499479 TTGATTATCTCATCTGATCTTTAAGGC 57.501 33.333 0.00 0.00 32.72 4.35
3290 3359 8.878211 TGATTATCTCATCTGATCTTTAAGGCT 58.122 33.333 0.00 0.00 0.00 4.58
3291 3360 9.723601 GATTATCTCATCTGATCTTTAAGGCTT 57.276 33.333 4.58 4.58 0.00 4.35
3293 3362 9.911788 TTATCTCATCTGATCTTTAAGGCTTTT 57.088 29.630 4.45 0.00 0.00 2.27
3294 3363 8.820153 ATCTCATCTGATCTTTAAGGCTTTTT 57.180 30.769 4.45 0.00 0.00 1.94
3295 3364 8.273780 TCTCATCTGATCTTTAAGGCTTTTTC 57.726 34.615 4.45 0.00 0.00 2.29
3296 3365 8.105829 TCTCATCTGATCTTTAAGGCTTTTTCT 58.894 33.333 4.45 0.00 0.00 2.52
3297 3366 8.641498 TCATCTGATCTTTAAGGCTTTTTCTT 57.359 30.769 4.45 0.00 0.00 2.52
3298 3367 8.734386 TCATCTGATCTTTAAGGCTTTTTCTTC 58.266 33.333 4.45 0.00 0.00 2.87
3299 3368 7.454260 TCTGATCTTTAAGGCTTTTTCTTCC 57.546 36.000 4.45 0.00 0.00 3.46
3300 3369 7.234355 TCTGATCTTTAAGGCTTTTTCTTCCT 58.766 34.615 4.45 0.00 0.00 3.36
3301 3370 8.383175 TCTGATCTTTAAGGCTTTTTCTTCCTA 58.617 33.333 4.45 0.00 0.00 2.94
3302 3371 8.934023 TGATCTTTAAGGCTTTTTCTTCCTAA 57.066 30.769 4.45 0.00 0.00 2.69
3303 3372 9.533831 TGATCTTTAAGGCTTTTTCTTCCTAAT 57.466 29.630 4.45 0.00 0.00 1.73
3308 3377 9.582648 TTTAAGGCTTTTTCTTCCTAATAGTGT 57.417 29.630 4.45 0.00 0.00 3.55
3311 3380 8.563123 AGGCTTTTTCTTCCTAATAGTGTAAC 57.437 34.615 0.00 0.00 0.00 2.50
3312 3381 7.333672 AGGCTTTTTCTTCCTAATAGTGTAACG 59.666 37.037 0.00 0.00 45.86 3.18
3313 3382 6.959871 GCTTTTTCTTCCTAATAGTGTAACGC 59.040 38.462 0.00 0.00 45.86 4.84
3314 3383 6.973229 TTTTCTTCCTAATAGTGTAACGCC 57.027 37.500 0.00 0.00 45.86 5.68
3315 3384 5.927281 TTCTTCCTAATAGTGTAACGCCT 57.073 39.130 0.00 0.00 45.86 5.52
3316 3385 7.408756 TTTCTTCCTAATAGTGTAACGCCTA 57.591 36.000 0.00 0.00 45.86 3.93
3317 3386 7.592885 TTCTTCCTAATAGTGTAACGCCTAT 57.407 36.000 0.00 0.00 45.86 2.57
3318 3387 6.978338 TCTTCCTAATAGTGTAACGCCTATG 58.022 40.000 0.00 0.00 45.86 2.23
3319 3388 6.774170 TCTTCCTAATAGTGTAACGCCTATGA 59.226 38.462 0.00 0.00 45.86 2.15
3320 3389 6.570672 TCCTAATAGTGTAACGCCTATGAG 57.429 41.667 0.00 0.00 45.86 2.90
3321 3390 6.301486 TCCTAATAGTGTAACGCCTATGAGA 58.699 40.000 0.00 0.00 45.86 3.27
3322 3391 6.430308 TCCTAATAGTGTAACGCCTATGAGAG 59.570 42.308 0.00 0.00 45.86 3.20
3323 3392 6.207025 CCTAATAGTGTAACGCCTATGAGAGT 59.793 42.308 0.00 0.00 45.86 3.24
3324 3393 5.692613 ATAGTGTAACGCCTATGAGAGTC 57.307 43.478 0.00 0.00 45.86 3.36
3325 3394 2.355132 AGTGTAACGCCTATGAGAGTCG 59.645 50.000 0.00 0.00 45.86 4.18
3326 3395 2.097142 GTGTAACGCCTATGAGAGTCGT 59.903 50.000 0.00 0.00 34.63 4.34
3327 3396 2.353889 TGTAACGCCTATGAGAGTCGTC 59.646 50.000 0.00 0.00 32.53 4.20
3328 3397 1.752683 AACGCCTATGAGAGTCGTCT 58.247 50.000 0.00 0.00 34.86 4.18
3338 3407 3.320673 GAGAGTCGTCTCCCATTTTGT 57.679 47.619 6.04 0.00 43.26 2.83
3339 3408 2.996621 GAGAGTCGTCTCCCATTTTGTG 59.003 50.000 6.04 0.00 43.26 3.33
3340 3409 2.368875 AGAGTCGTCTCCCATTTTGTGT 59.631 45.455 6.04 0.00 41.26 3.72
3341 3410 2.480419 GAGTCGTCTCCCATTTTGTGTG 59.520 50.000 0.00 0.00 34.87 3.82
3342 3411 1.535462 GTCGTCTCCCATTTTGTGTGG 59.465 52.381 0.00 0.00 36.47 4.17
3343 3412 1.418264 TCGTCTCCCATTTTGTGTGGA 59.582 47.619 0.00 0.00 39.12 4.02
3344 3413 1.806542 CGTCTCCCATTTTGTGTGGAG 59.193 52.381 0.00 0.00 42.24 3.86
3345 3414 2.549992 CGTCTCCCATTTTGTGTGGAGA 60.550 50.000 3.06 3.06 44.80 3.71
3346 3415 3.140325 TCTCCCATTTTGTGTGGAGAC 57.860 47.619 3.06 0.00 43.46 3.36
3347 3416 1.806542 CTCCCATTTTGTGTGGAGACG 59.193 52.381 0.00 0.00 42.91 4.18
3348 3417 1.142060 TCCCATTTTGTGTGGAGACGT 59.858 47.619 0.00 0.00 39.12 4.34
3349 3418 1.266718 CCCATTTTGTGTGGAGACGTG 59.733 52.381 0.00 0.00 39.12 4.49
3350 3419 1.946768 CCATTTTGTGTGGAGACGTGT 59.053 47.619 0.00 0.00 39.12 4.49
3351 3420 2.032030 CCATTTTGTGTGGAGACGTGTC 60.032 50.000 3.66 3.66 39.12 3.67
3352 3421 2.684001 TTTTGTGTGGAGACGTGTCT 57.316 45.000 12.92 1.35 43.78 3.41
3353 3422 1.934589 TTTGTGTGGAGACGTGTCTG 58.065 50.000 12.92 0.00 40.61 3.51
3354 3423 1.107945 TTGTGTGGAGACGTGTCTGA 58.892 50.000 12.92 0.00 40.61 3.27
3355 3424 0.384309 TGTGTGGAGACGTGTCTGAC 59.616 55.000 12.92 10.05 40.61 3.51
3356 3425 0.669077 GTGTGGAGACGTGTCTGACT 59.331 55.000 12.92 0.00 40.61 3.41
3357 3426 1.878088 GTGTGGAGACGTGTCTGACTA 59.122 52.381 12.92 0.00 40.61 2.59
3358 3427 2.488545 GTGTGGAGACGTGTCTGACTAT 59.511 50.000 12.92 0.00 40.61 2.12
3359 3428 3.057456 GTGTGGAGACGTGTCTGACTATT 60.057 47.826 12.92 0.00 40.61 1.73
3360 3429 3.572682 TGTGGAGACGTGTCTGACTATTT 59.427 43.478 12.92 0.00 40.61 1.40
3361 3430 4.038763 TGTGGAGACGTGTCTGACTATTTT 59.961 41.667 12.92 0.00 40.61 1.82
3362 3431 4.989168 GTGGAGACGTGTCTGACTATTTTT 59.011 41.667 12.92 0.00 40.61 1.94
3385 3454 9.534565 TTTTTACTGTTTTATGCACAATGCTAA 57.465 25.926 2.02 0.00 45.31 3.09
3386 3455 9.534565 TTTTACTGTTTTATGCACAATGCTAAA 57.465 25.926 2.02 2.68 45.31 1.85
3387 3456 9.703892 TTTACTGTTTTATGCACAATGCTAAAT 57.296 25.926 2.02 0.00 45.31 1.40
3390 3459 9.139174 ACTGTTTTATGCACAATGCTAAATAAC 57.861 29.630 2.02 2.01 45.31 1.89
3391 3460 8.472683 TGTTTTATGCACAATGCTAAATAACC 57.527 30.769 2.02 0.00 45.31 2.85
3392 3461 7.547370 TGTTTTATGCACAATGCTAAATAACCC 59.453 33.333 2.02 0.00 45.31 4.11
3393 3462 3.773860 TGCACAATGCTAAATAACCCG 57.226 42.857 2.02 0.00 45.31 5.28
3394 3463 3.348119 TGCACAATGCTAAATAACCCGA 58.652 40.909 2.02 0.00 45.31 5.14
3395 3464 3.127895 TGCACAATGCTAAATAACCCGAC 59.872 43.478 2.02 0.00 45.31 4.79
3396 3465 3.377172 GCACAATGCTAAATAACCCGACT 59.623 43.478 0.00 0.00 40.96 4.18
3397 3466 4.573201 GCACAATGCTAAATAACCCGACTA 59.427 41.667 0.00 0.00 40.96 2.59
3398 3467 5.065474 GCACAATGCTAAATAACCCGACTAA 59.935 40.000 0.00 0.00 40.96 2.24
3399 3468 6.403855 GCACAATGCTAAATAACCCGACTAAA 60.404 38.462 0.00 0.00 40.96 1.85
3400 3469 7.531716 CACAATGCTAAATAACCCGACTAAAA 58.468 34.615 0.00 0.00 0.00 1.52
3401 3470 8.188139 CACAATGCTAAATAACCCGACTAAAAT 58.812 33.333 0.00 0.00 0.00 1.82
3402 3471 8.403236 ACAATGCTAAATAACCCGACTAAAATC 58.597 33.333 0.00 0.00 0.00 2.17
3403 3472 8.402472 CAATGCTAAATAACCCGACTAAAATCA 58.598 33.333 0.00 0.00 0.00 2.57
3404 3473 8.691661 ATGCTAAATAACCCGACTAAAATCAT 57.308 30.769 0.00 0.00 0.00 2.45
3405 3474 7.925993 TGCTAAATAACCCGACTAAAATCATG 58.074 34.615 0.00 0.00 0.00 3.07
3406 3475 7.771361 TGCTAAATAACCCGACTAAAATCATGA 59.229 33.333 0.00 0.00 0.00 3.07
3407 3476 8.784043 GCTAAATAACCCGACTAAAATCATGAT 58.216 33.333 1.18 1.18 0.00 2.45
3447 3516 8.883731 ACTTTCTCGGTTCACAAATATAAGATG 58.116 33.333 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.860650 TGTATTCTTACCCATTATATTTGCTGT 57.139 29.630 0.00 0.00 0.00 4.40
173 177 3.755378 TCTCAAGTTACCAGTACGAGTCC 59.245 47.826 0.00 0.00 0.00 3.85
273 279 9.865321 CATGAATTTCCATTATCTGTTCTGTTT 57.135 29.630 0.00 0.00 0.00 2.83
306 319 3.782443 CCGTGGGTGCCCTCTACC 61.782 72.222 8.91 0.00 37.48 3.18
356 369 1.604593 GCTCTTCTTGCAGGCCCAA 60.605 57.895 0.00 0.00 0.00 4.12
371 384 1.153997 GTCTCACCGGAGTTCGCTC 60.154 63.158 9.46 0.00 42.05 5.03
530 559 4.778143 ATTCCCGCCGCTCGCTTT 62.778 61.111 0.00 0.00 36.73 3.51
676 729 2.509336 ATTCAGTTCTCGCCGCCG 60.509 61.111 0.00 0.00 0.00 6.46
685 738 3.140814 GGGCGGCCCATTCAGTTC 61.141 66.667 32.90 1.31 44.65 3.01
768 821 8.648968 CGTAATCTCTTTTTGAGTAACTCTTCC 58.351 37.037 0.00 0.00 43.13 3.46
773 826 8.365647 TCTTCCGTAATCTCTTTTTGAGTAACT 58.634 33.333 0.00 0.00 43.13 2.24
774 827 8.530269 TCTTCCGTAATCTCTTTTTGAGTAAC 57.470 34.615 0.00 0.00 43.13 2.50
776 829 9.550406 TTTTCTTCCGTAATCTCTTTTTGAGTA 57.450 29.630 0.00 0.00 43.13 2.59
777 830 8.446599 TTTTCTTCCGTAATCTCTTTTTGAGT 57.553 30.769 0.00 0.00 43.13 3.41
806 868 7.621796 GGAGACCGTCCATAAATAAATATCCT 58.378 38.462 0.00 0.00 46.10 3.24
852 914 5.537300 TGTAGGGAACAGATAAGATGAGC 57.463 43.478 0.00 0.00 33.01 4.26
855 917 9.539825 GCATATATGTAGGGAACAGATAAGATG 57.460 37.037 14.14 0.00 43.55 2.90
856 918 8.417106 CGCATATATGTAGGGAACAGATAAGAT 58.583 37.037 14.14 0.00 43.55 2.40
857 919 7.630728 GCGCATATATGTAGGGAACAGATAAGA 60.631 40.741 14.14 0.00 43.55 2.10
858 920 6.477033 GCGCATATATGTAGGGAACAGATAAG 59.523 42.308 14.14 0.00 43.55 1.73
859 921 6.338146 GCGCATATATGTAGGGAACAGATAA 58.662 40.000 14.14 0.00 43.55 1.75
860 922 5.163447 GGCGCATATATGTAGGGAACAGATA 60.163 44.000 10.83 0.00 44.23 1.98
861 923 4.383118 GGCGCATATATGTAGGGAACAGAT 60.383 45.833 10.83 0.00 42.70 2.90
862 924 3.056107 GGCGCATATATGTAGGGAACAGA 60.056 47.826 10.83 0.00 42.70 3.41
863 925 3.262420 GGCGCATATATGTAGGGAACAG 58.738 50.000 10.83 0.00 42.70 3.16
864 926 2.635427 TGGCGCATATATGTAGGGAACA 59.365 45.455 10.83 2.35 43.86 3.18
865 927 3.328382 TGGCGCATATATGTAGGGAAC 57.672 47.619 10.83 0.00 0.00 3.62
866 928 3.071747 TGTTGGCGCATATATGTAGGGAA 59.928 43.478 10.83 0.00 0.00 3.97
867 929 2.635427 TGTTGGCGCATATATGTAGGGA 59.365 45.455 10.83 0.00 0.00 4.20
868 930 3.052455 TGTTGGCGCATATATGTAGGG 57.948 47.619 10.83 3.31 0.00 3.53
869 931 4.672542 GCATTGTTGGCGCATATATGTAGG 60.673 45.833 10.83 5.57 0.00 3.18
870 932 4.083377 TGCATTGTTGGCGCATATATGTAG 60.083 41.667 10.83 9.70 0.00 2.74
871 933 3.817647 TGCATTGTTGGCGCATATATGTA 59.182 39.130 10.83 2.58 0.00 2.29
872 934 2.622470 TGCATTGTTGGCGCATATATGT 59.378 40.909 10.83 0.00 0.00 2.29
873 935 3.058085 TCTGCATTGTTGGCGCATATATG 60.058 43.478 10.83 8.45 34.63 1.78
874 936 3.148412 TCTGCATTGTTGGCGCATATAT 58.852 40.909 10.83 0.00 34.63 0.86
875 937 2.549329 CTCTGCATTGTTGGCGCATATA 59.451 45.455 10.83 0.00 34.63 0.86
876 938 1.335810 CTCTGCATTGTTGGCGCATAT 59.664 47.619 10.83 0.00 34.63 1.78
877 939 0.734309 CTCTGCATTGTTGGCGCATA 59.266 50.000 10.83 0.00 34.63 3.14
878 940 1.509463 CTCTGCATTGTTGGCGCAT 59.491 52.632 10.83 0.00 34.63 4.73
879 941 2.956194 CTCTGCATTGTTGGCGCA 59.044 55.556 10.83 0.00 0.00 6.09
880 942 1.647545 TAGCTCTGCATTGTTGGCGC 61.648 55.000 0.00 0.00 0.00 6.53
881 943 1.019673 ATAGCTCTGCATTGTTGGCG 58.980 50.000 0.00 0.00 0.00 5.69
882 944 4.604976 CTTAATAGCTCTGCATTGTTGGC 58.395 43.478 0.00 0.00 0.00 4.52
883 945 4.604976 GCTTAATAGCTCTGCATTGTTGG 58.395 43.478 0.00 0.00 44.27 3.77
903 965 5.292101 GCAAGAAACAGATTAGTACGATGCT 59.708 40.000 0.00 0.00 0.00 3.79
904 966 5.292101 AGCAAGAAACAGATTAGTACGATGC 59.708 40.000 0.00 0.00 0.00 3.91
905 967 6.700020 CAGCAAGAAACAGATTAGTACGATG 58.300 40.000 0.00 0.00 0.00 3.84
907 969 4.625742 GCAGCAAGAAACAGATTAGTACGA 59.374 41.667 0.00 0.00 0.00 3.43
908 970 4.388773 TGCAGCAAGAAACAGATTAGTACG 59.611 41.667 0.00 0.00 0.00 3.67
909 971 5.862924 TGCAGCAAGAAACAGATTAGTAC 57.137 39.130 0.00 0.00 0.00 2.73
911 973 4.763793 ACATGCAGCAAGAAACAGATTAGT 59.236 37.500 4.23 0.00 0.00 2.24
912 974 5.306532 ACATGCAGCAAGAAACAGATTAG 57.693 39.130 4.23 0.00 0.00 1.73
913 975 5.163864 CGTACATGCAGCAAGAAACAGATTA 60.164 40.000 4.23 0.00 0.00 1.75
915 977 3.125829 CGTACATGCAGCAAGAAACAGAT 59.874 43.478 4.23 0.00 0.00 2.90
939 1004 3.574396 TCTCACGAGTCTTCAAGTCCATT 59.426 43.478 0.00 0.00 0.00 3.16
955 1020 1.131504 CTTCGTCTCCCTCTTCTCACG 59.868 57.143 0.00 0.00 0.00 4.35
958 1023 0.458260 GCCTTCGTCTCCCTCTTCTC 59.542 60.000 0.00 0.00 0.00 2.87
971 1036 2.464459 GGACATCTTGCCGCCTTCG 61.464 63.158 0.00 0.00 0.00 3.79
998 1063 2.562738 TCGAGAACAAGCTCTTCCATCA 59.437 45.455 0.00 0.00 32.71 3.07
1027 1092 1.294659 GACTTCACTGGCAGCCGAAG 61.295 60.000 30.71 30.71 40.54 3.79
1071 1136 1.228429 GGTTGTGCACCAGGCCTTA 60.228 57.895 15.69 0.00 46.42 2.69
1084 1149 0.914417 ATGGGGTCGGAGATGGTTGT 60.914 55.000 0.00 0.00 40.67 3.32
1107 1172 1.609072 CGCTCAAGATGACTCCGGATA 59.391 52.381 3.57 0.00 0.00 2.59
1119 1184 0.036732 ATGGTTTCTGGCGCTCAAGA 59.963 50.000 7.64 5.57 0.00 3.02
1140 1205 0.179009 CGTGGGGAATGATGAGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
1192 1257 0.923358 TGGGTTGAGAAGGTGGTTGT 59.077 50.000 0.00 0.00 0.00 3.32
1214 1279 1.888436 CTGCCACTGGTAGAAGCGGA 61.888 60.000 7.38 0.00 37.63 5.54
1251 1316 3.749226 TGTGTGCATCAACCTTGTATCA 58.251 40.909 0.00 0.00 0.00 2.15
1261 1326 2.618241 GGAAGTCAGTTGTGTGCATCAA 59.382 45.455 0.00 0.00 0.00 2.57
1281 1346 5.046288 AGATTGAGCTAAATTCTCCAGGG 57.954 43.478 0.00 0.00 0.00 4.45
1284 1349 6.070596 TGTGAGAGATTGAGCTAAATTCTCCA 60.071 38.462 21.32 17.72 30.69 3.86
1287 1352 7.201714 GCAATGTGAGAGATTGAGCTAAATTCT 60.202 37.037 0.00 3.33 33.36 2.40
1293 1358 3.432749 GGGCAATGTGAGAGATTGAGCTA 60.433 47.826 0.00 0.00 33.36 3.32
1321 1386 1.374758 GGAAGAGCACCAGACCGTG 60.375 63.158 0.00 0.00 36.80 4.94
1353 1418 2.103263 GGCCGGATTGAAGATGTAGAGT 59.897 50.000 5.05 0.00 0.00 3.24
1360 1425 0.107017 CTGGTGGCCGGATTGAAGAT 60.107 55.000 5.05 0.00 29.82 2.40
1399 1464 2.799871 CGTTTTGGTGCGGTTACTTTT 58.200 42.857 0.00 0.00 0.00 2.27
1428 1493 0.600255 CCGTCGGGAGGAACATATGC 60.600 60.000 2.34 0.00 34.06 3.14
1466 1531 4.038883 GGACTACCTTGTACTTGTCAGTGT 59.961 45.833 0.00 0.00 34.06 3.55
1472 1537 1.897802 CCCGGACTACCTTGTACTTGT 59.102 52.381 0.73 0.00 0.00 3.16
1521 1586 0.693622 TCCCCATGCGGTAAACTTCA 59.306 50.000 0.00 0.00 0.00 3.02
1733 1798 1.588139 GGTAGACGAATGACGCGGG 60.588 63.158 12.47 0.00 46.94 6.13
1778 1843 3.009723 TCCAACAGAAAGGATTCATCGC 58.990 45.455 0.00 0.00 38.06 4.58
2179 2244 0.101399 CTCCCATCTCGAGTTCACGG 59.899 60.000 13.13 6.82 0.00 4.94
2233 2298 2.167075 CCTGGAAGAAATGACATTGGCC 59.833 50.000 0.34 0.00 34.07 5.36
2273 2338 2.629051 CGGTAGAAATTGGGACCAGAC 58.371 52.381 0.00 0.00 31.89 3.51
2275 2340 1.065418 AGCGGTAGAAATTGGGACCAG 60.065 52.381 0.00 0.00 31.89 4.00
2293 2358 4.085302 CTGTCTGCAGCTCGTAGC 57.915 61.111 9.47 0.00 42.84 3.58
2309 2374 1.192146 TGGTCAGCGGGTTAGAAGCT 61.192 55.000 0.00 0.00 42.64 3.74
2322 2387 2.184448 CAACGCAAACACTTTGGTCAG 58.816 47.619 0.00 0.00 40.94 3.51
2366 2431 3.830755 TCTTCTTAGTAGCGTGTTCCCTT 59.169 43.478 0.00 0.00 0.00 3.95
2385 2450 9.930693 AGTTACGTTGAAGAAGAAGATATTCTT 57.069 29.630 14.99 14.99 46.89 2.52
2469 2534 2.900122 GCTTATCGCAAGCTGAAACA 57.100 45.000 12.65 0.00 40.01 2.83
2513 2578 6.678245 CGCAATTTTGAAAACAAGACTTTCAC 59.322 34.615 0.00 0.00 41.32 3.18
2528 2593 9.737427 TCTTTAGTGTTTTTATCGCAATTTTGA 57.263 25.926 0.00 0.00 0.00 2.69
2546 2611 9.906660 TTACAACCAAGCAAATATTCTTTAGTG 57.093 29.630 0.00 0.00 0.00 2.74
2650 2717 0.039256 TCAAAATGCTGCTCCGTTGC 60.039 50.000 0.00 0.00 0.00 4.17
2660 2727 5.895636 TGGTTCATACGAATCAAAATGCT 57.104 34.783 0.00 0.00 39.34 3.79
2665 2732 6.655425 TGGTGTTATGGTTCATACGAATCAAA 59.345 34.615 0.00 0.00 45.24 2.69
2670 2737 5.181622 GGTTTGGTGTTATGGTTCATACGAA 59.818 40.000 0.00 0.00 0.00 3.85
2721 2788 6.650807 TGAAGAGGTGAATTCATACAAGTCAC 59.349 38.462 12.12 6.41 42.49 3.67
2761 2828 7.605410 TTCAAGAACCTTTGTACGATAATCC 57.395 36.000 0.00 0.00 0.00 3.01
2767 2834 7.486551 CACAAATTTTCAAGAACCTTTGTACGA 59.513 33.333 15.68 0.00 35.33 3.43
2980 3049 3.068024 TGTCAATTTCTGCAAGGGTGTTC 59.932 43.478 0.00 0.00 0.00 3.18
3048 3117 2.963854 CCGCGCACTGCTGATAGG 60.964 66.667 8.75 0.00 43.27 2.57
3054 3123 3.807631 TTTCTCACCGCGCACTGCT 62.808 57.895 8.75 0.00 43.27 4.24
3057 3126 1.956170 CTGTTTCTCACCGCGCACT 60.956 57.895 8.75 0.00 0.00 4.40
3064 3133 2.359975 CCGCCCCTGTTTCTCACC 60.360 66.667 0.00 0.00 0.00 4.02
3065 3134 1.376037 CTCCGCCCCTGTTTCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
3078 3147 0.678048 AGTTCAAATCCTGGCTCCGC 60.678 55.000 0.00 0.00 0.00 5.54
3079 3148 1.470098 CAAGTTCAAATCCTGGCTCCG 59.530 52.381 0.00 0.00 0.00 4.63
3080 3149 2.751806 CTCAAGTTCAAATCCTGGCTCC 59.248 50.000 0.00 0.00 0.00 4.70
3081 3150 3.679389 TCTCAAGTTCAAATCCTGGCTC 58.321 45.455 0.00 0.00 0.00 4.70
3082 3151 3.560882 CCTCTCAAGTTCAAATCCTGGCT 60.561 47.826 0.00 0.00 0.00 4.75
3083 3152 2.751806 CCTCTCAAGTTCAAATCCTGGC 59.248 50.000 0.00 0.00 0.00 4.85
3084 3153 3.350833 CCCTCTCAAGTTCAAATCCTGG 58.649 50.000 0.00 0.00 0.00 4.45
3085 3154 3.350833 CCCCTCTCAAGTTCAAATCCTG 58.649 50.000 0.00 0.00 0.00 3.86
3086 3155 2.291217 GCCCCTCTCAAGTTCAAATCCT 60.291 50.000 0.00 0.00 0.00 3.24
3087 3156 2.095461 GCCCCTCTCAAGTTCAAATCC 58.905 52.381 0.00 0.00 0.00 3.01
3088 3157 1.740025 CGCCCCTCTCAAGTTCAAATC 59.260 52.381 0.00 0.00 0.00 2.17
3089 3158 1.351017 TCGCCCCTCTCAAGTTCAAAT 59.649 47.619 0.00 0.00 0.00 2.32
3090 3159 0.762418 TCGCCCCTCTCAAGTTCAAA 59.238 50.000 0.00 0.00 0.00 2.69
3091 3160 0.762418 TTCGCCCCTCTCAAGTTCAA 59.238 50.000 0.00 0.00 0.00 2.69
3092 3161 0.762418 TTTCGCCCCTCTCAAGTTCA 59.238 50.000 0.00 0.00 0.00 3.18
3093 3162 1.807142 CTTTTCGCCCCTCTCAAGTTC 59.193 52.381 0.00 0.00 0.00 3.01
3094 3163 1.897560 CTTTTCGCCCCTCTCAAGTT 58.102 50.000 0.00 0.00 0.00 2.66
3095 3164 0.606673 GCTTTTCGCCCCTCTCAAGT 60.607 55.000 0.00 0.00 0.00 3.16
3096 3165 2.175236 GCTTTTCGCCCCTCTCAAG 58.825 57.895 0.00 0.00 0.00 3.02
3097 3166 4.397348 GCTTTTCGCCCCTCTCAA 57.603 55.556 0.00 0.00 0.00 3.02
3106 3175 2.253603 GTGTGATCATTGGCTTTTCGC 58.746 47.619 0.00 0.00 38.13 4.70
3107 3176 3.557577 TGTGTGATCATTGGCTTTTCG 57.442 42.857 0.00 0.00 0.00 3.46
3108 3177 5.048504 TCTCTTGTGTGATCATTGGCTTTTC 60.049 40.000 0.00 0.00 0.00 2.29
3109 3178 4.828939 TCTCTTGTGTGATCATTGGCTTTT 59.171 37.500 0.00 0.00 0.00 2.27
3110 3179 4.217118 GTCTCTTGTGTGATCATTGGCTTT 59.783 41.667 0.00 0.00 0.00 3.51
3111 3180 3.755378 GTCTCTTGTGTGATCATTGGCTT 59.245 43.478 0.00 0.00 0.00 4.35
3112 3181 3.244665 TGTCTCTTGTGTGATCATTGGCT 60.245 43.478 0.00 0.00 0.00 4.75
3113 3182 3.076621 TGTCTCTTGTGTGATCATTGGC 58.923 45.455 0.00 0.00 0.00 4.52
3114 3183 5.694231 TTTGTCTCTTGTGTGATCATTGG 57.306 39.130 0.00 0.00 0.00 3.16
3115 3184 6.497437 TGTTTTGTCTCTTGTGTGATCATTG 58.503 36.000 0.00 0.00 0.00 2.82
3116 3185 6.698008 TGTTTTGTCTCTTGTGTGATCATT 57.302 33.333 0.00 0.00 0.00 2.57
3117 3186 6.487668 TGATGTTTTGTCTCTTGTGTGATCAT 59.512 34.615 0.00 0.00 0.00 2.45
3118 3187 5.821995 TGATGTTTTGTCTCTTGTGTGATCA 59.178 36.000 0.00 0.00 0.00 2.92
3119 3188 6.138761 GTGATGTTTTGTCTCTTGTGTGATC 58.861 40.000 0.00 0.00 0.00 2.92
3120 3189 5.277490 CGTGATGTTTTGTCTCTTGTGTGAT 60.277 40.000 0.00 0.00 0.00 3.06
3121 3190 4.033932 CGTGATGTTTTGTCTCTTGTGTGA 59.966 41.667 0.00 0.00 0.00 3.58
3122 3191 4.274069 CGTGATGTTTTGTCTCTTGTGTG 58.726 43.478 0.00 0.00 0.00 3.82
3123 3192 3.242739 GCGTGATGTTTTGTCTCTTGTGT 60.243 43.478 0.00 0.00 0.00 3.72
3124 3193 3.002656 AGCGTGATGTTTTGTCTCTTGTG 59.997 43.478 0.00 0.00 0.00 3.33
3125 3194 3.002656 CAGCGTGATGTTTTGTCTCTTGT 59.997 43.478 0.00 0.00 0.00 3.16
3126 3195 3.548587 CAGCGTGATGTTTTGTCTCTTG 58.451 45.455 0.00 0.00 0.00 3.02
3127 3196 2.549754 CCAGCGTGATGTTTTGTCTCTT 59.450 45.455 0.00 0.00 0.00 2.85
3128 3197 2.146342 CCAGCGTGATGTTTTGTCTCT 58.854 47.619 0.00 0.00 0.00 3.10
3129 3198 1.400242 GCCAGCGTGATGTTTTGTCTC 60.400 52.381 0.00 0.00 0.00 3.36
3130 3199 0.593128 GCCAGCGTGATGTTTTGTCT 59.407 50.000 0.00 0.00 0.00 3.41
3131 3200 0.387239 GGCCAGCGTGATGTTTTGTC 60.387 55.000 0.00 0.00 0.00 3.18
3132 3201 0.823356 AGGCCAGCGTGATGTTTTGT 60.823 50.000 5.01 0.00 0.00 2.83
3133 3202 0.314935 AAGGCCAGCGTGATGTTTTG 59.685 50.000 5.01 0.00 0.00 2.44
3134 3203 0.314935 CAAGGCCAGCGTGATGTTTT 59.685 50.000 5.01 0.00 0.00 2.43
3135 3204 0.537143 TCAAGGCCAGCGTGATGTTT 60.537 50.000 5.01 0.00 0.00 2.83
3136 3205 0.322816 ATCAAGGCCAGCGTGATGTT 60.323 50.000 5.01 0.00 0.00 2.71
3137 3206 1.028330 CATCAAGGCCAGCGTGATGT 61.028 55.000 21.54 0.29 33.68 3.06
3138 3207 1.028330 ACATCAAGGCCAGCGTGATG 61.028 55.000 25.27 25.27 41.30 3.07
3139 3208 0.745845 GACATCAAGGCCAGCGTGAT 60.746 55.000 5.01 5.42 0.00 3.06
3140 3209 1.375908 GACATCAAGGCCAGCGTGA 60.376 57.895 5.01 2.84 0.00 4.35
3141 3210 1.236616 TTGACATCAAGGCCAGCGTG 61.237 55.000 5.01 0.45 0.00 5.34
3142 3211 0.322816 ATTGACATCAAGGCCAGCGT 60.323 50.000 5.01 0.00 39.47 5.07
3143 3212 0.099968 CATTGACATCAAGGCCAGCG 59.900 55.000 5.01 0.00 39.47 5.18
3227 3296 9.241919 TGTTGGTGATCATACAACTCAATTTAT 57.758 29.630 29.92 0.00 43.54 1.40
3228 3297 8.628630 TGTTGGTGATCATACAACTCAATTTA 57.371 30.769 29.92 15.96 43.54 1.40
3229 3298 7.523293 TGTTGGTGATCATACAACTCAATTT 57.477 32.000 29.92 0.00 43.54 1.82
3230 3299 7.148018 GGATGTTGGTGATCATACAACTCAATT 60.148 37.037 29.92 17.85 43.54 2.32
3231 3300 6.319658 GGATGTTGGTGATCATACAACTCAAT 59.680 38.462 29.92 21.61 43.54 2.57
3232 3301 5.647658 GGATGTTGGTGATCATACAACTCAA 59.352 40.000 29.92 19.17 43.54 3.02
3233 3302 5.185454 GGATGTTGGTGATCATACAACTCA 58.815 41.667 29.92 19.67 43.54 3.41
3234 3303 5.185454 TGGATGTTGGTGATCATACAACTC 58.815 41.667 29.92 25.15 43.54 3.01
3235 3304 5.178096 TGGATGTTGGTGATCATACAACT 57.822 39.130 29.92 21.44 43.54 3.16
3236 3305 5.895636 TTGGATGTTGGTGATCATACAAC 57.104 39.130 26.54 26.54 39.17 3.32
3237 3306 5.320277 TGTTGGATGTTGGTGATCATACAA 58.680 37.500 10.62 10.62 40.97 2.41
3238 3307 4.916183 TGTTGGATGTTGGTGATCATACA 58.084 39.130 0.00 4.72 33.69 2.29
3239 3308 5.415701 ACTTGTTGGATGTTGGTGATCATAC 59.584 40.000 0.00 0.00 0.00 2.39
3240 3309 5.569355 ACTTGTTGGATGTTGGTGATCATA 58.431 37.500 0.00 0.00 0.00 2.15
3241 3310 4.410099 ACTTGTTGGATGTTGGTGATCAT 58.590 39.130 0.00 0.00 0.00 2.45
3242 3311 3.831323 ACTTGTTGGATGTTGGTGATCA 58.169 40.909 0.00 0.00 0.00 2.92
3243 3312 4.278170 TCAACTTGTTGGATGTTGGTGATC 59.722 41.667 12.75 0.00 39.24 2.92
3244 3313 4.214310 TCAACTTGTTGGATGTTGGTGAT 58.786 39.130 12.75 0.00 39.24 3.06
3245 3314 3.625853 TCAACTTGTTGGATGTTGGTGA 58.374 40.909 12.75 0.00 39.24 4.02
3246 3315 4.589216 ATCAACTTGTTGGATGTTGGTG 57.411 40.909 12.75 0.00 39.24 4.17
3247 3316 6.721208 AGATAATCAACTTGTTGGATGTTGGT 59.279 34.615 12.75 0.00 39.24 3.67
3248 3317 7.094248 TGAGATAATCAACTTGTTGGATGTTGG 60.094 37.037 12.75 0.00 39.24 3.77
3249 3318 7.819644 TGAGATAATCAACTTGTTGGATGTTG 58.180 34.615 12.75 0.00 39.83 3.33
3250 3319 8.585471 ATGAGATAATCAACTTGTTGGATGTT 57.415 30.769 12.75 6.62 42.53 2.71
3251 3320 8.051535 AGATGAGATAATCAACTTGTTGGATGT 58.948 33.333 12.75 4.20 42.53 3.06
3252 3321 8.343366 CAGATGAGATAATCAACTTGTTGGATG 58.657 37.037 12.75 0.00 42.53 3.51
3253 3322 8.270030 TCAGATGAGATAATCAACTTGTTGGAT 58.730 33.333 12.75 5.27 42.53 3.41
3254 3323 7.623630 TCAGATGAGATAATCAACTTGTTGGA 58.376 34.615 12.75 1.86 42.53 3.53
3255 3324 7.854557 TCAGATGAGATAATCAACTTGTTGG 57.145 36.000 12.75 0.00 42.53 3.77
3256 3325 9.327628 AGATCAGATGAGATAATCAACTTGTTG 57.672 33.333 7.13 7.13 42.53 3.33
3257 3326 9.902684 AAGATCAGATGAGATAATCAACTTGTT 57.097 29.630 0.00 0.00 42.53 2.83
3258 3327 9.902684 AAAGATCAGATGAGATAATCAACTTGT 57.097 29.630 0.00 0.00 42.53 3.16
3263 3332 9.499479 GCCTTAAAGATCAGATGAGATAATCAA 57.501 33.333 0.00 0.00 42.53 2.57
3264 3333 8.878211 AGCCTTAAAGATCAGATGAGATAATCA 58.122 33.333 0.00 0.00 43.70 2.57
3265 3334 9.723601 AAGCCTTAAAGATCAGATGAGATAATC 57.276 33.333 0.00 0.00 0.00 1.75
3267 3336 9.911788 AAAAGCCTTAAAGATCAGATGAGATAA 57.088 29.630 0.00 0.00 0.00 1.75
3268 3337 9.911788 AAAAAGCCTTAAAGATCAGATGAGATA 57.088 29.630 0.00 0.00 0.00 1.98
3269 3338 8.820153 AAAAAGCCTTAAAGATCAGATGAGAT 57.180 30.769 0.00 0.00 0.00 2.75
3270 3339 8.105829 AGAAAAAGCCTTAAAGATCAGATGAGA 58.894 33.333 0.00 0.00 0.00 3.27
3271 3340 8.278729 AGAAAAAGCCTTAAAGATCAGATGAG 57.721 34.615 0.00 0.00 0.00 2.90
3272 3341 8.641498 AAGAAAAAGCCTTAAAGATCAGATGA 57.359 30.769 0.00 0.00 0.00 2.92
3273 3342 7.972832 GGAAGAAAAAGCCTTAAAGATCAGATG 59.027 37.037 0.00 0.00 0.00 2.90
3274 3343 7.892771 AGGAAGAAAAAGCCTTAAAGATCAGAT 59.107 33.333 0.00 0.00 0.00 2.90
3275 3344 7.234355 AGGAAGAAAAAGCCTTAAAGATCAGA 58.766 34.615 0.00 0.00 0.00 3.27
3276 3345 7.459795 AGGAAGAAAAAGCCTTAAAGATCAG 57.540 36.000 0.00 0.00 0.00 2.90
3277 3346 8.934023 TTAGGAAGAAAAAGCCTTAAAGATCA 57.066 30.769 0.00 0.00 33.28 2.92
3282 3351 9.582648 ACACTATTAGGAAGAAAAAGCCTTAAA 57.417 29.630 0.00 0.00 33.28 1.52
3285 3354 9.011095 GTTACACTATTAGGAAGAAAAAGCCTT 57.989 33.333 0.00 0.00 33.28 4.35
3286 3355 7.333672 CGTTACACTATTAGGAAGAAAAAGCCT 59.666 37.037 0.00 0.00 35.82 4.58
3287 3356 7.461918 CGTTACACTATTAGGAAGAAAAAGCC 58.538 38.462 0.00 0.00 0.00 4.35
3288 3357 6.959871 GCGTTACACTATTAGGAAGAAAAAGC 59.040 38.462 0.00 0.00 0.00 3.51
3289 3358 7.333672 AGGCGTTACACTATTAGGAAGAAAAAG 59.666 37.037 0.00 0.00 0.00 2.27
3290 3359 7.163441 AGGCGTTACACTATTAGGAAGAAAAA 58.837 34.615 0.00 0.00 0.00 1.94
3291 3360 6.704310 AGGCGTTACACTATTAGGAAGAAAA 58.296 36.000 0.00 0.00 0.00 2.29
3292 3361 6.290294 AGGCGTTACACTATTAGGAAGAAA 57.710 37.500 0.00 0.00 0.00 2.52
3293 3362 5.927281 AGGCGTTACACTATTAGGAAGAA 57.073 39.130 0.00 0.00 0.00 2.52
3294 3363 6.774170 TCATAGGCGTTACACTATTAGGAAGA 59.226 38.462 0.00 0.00 0.00 2.87
3295 3364 6.978338 TCATAGGCGTTACACTATTAGGAAG 58.022 40.000 0.00 0.00 0.00 3.46
3296 3365 6.774170 TCTCATAGGCGTTACACTATTAGGAA 59.226 38.462 0.00 0.00 0.00 3.36
3297 3366 6.301486 TCTCATAGGCGTTACACTATTAGGA 58.699 40.000 0.00 0.00 0.00 2.94
3298 3367 6.207025 ACTCTCATAGGCGTTACACTATTAGG 59.793 42.308 0.00 0.00 0.00 2.69
3299 3368 7.204496 ACTCTCATAGGCGTTACACTATTAG 57.796 40.000 0.00 0.00 0.00 1.73
3300 3369 7.199541 GACTCTCATAGGCGTTACACTATTA 57.800 40.000 0.00 0.00 0.00 0.98
3301 3370 6.074544 GACTCTCATAGGCGTTACACTATT 57.925 41.667 0.00 0.00 0.00 1.73
3302 3371 5.692613 GACTCTCATAGGCGTTACACTAT 57.307 43.478 0.00 0.00 0.00 2.12
3312 3381 0.955905 GGGAGACGACTCTCATAGGC 59.044 60.000 14.36 0.00 44.50 3.93
3318 3387 2.996621 CACAAAATGGGAGACGACTCTC 59.003 50.000 14.36 11.32 43.42 3.20
3319 3388 2.368875 ACACAAAATGGGAGACGACTCT 59.631 45.455 14.36 0.00 42.28 3.24
3320 3389 2.480419 CACACAAAATGGGAGACGACTC 59.520 50.000 6.33 6.33 41.94 3.36
3321 3390 2.494059 CACACAAAATGGGAGACGACT 58.506 47.619 0.00 0.00 30.67 4.18
3322 3391 1.535462 CCACACAAAATGGGAGACGAC 59.465 52.381 0.00 0.00 30.67 4.34
3323 3392 1.418264 TCCACACAAAATGGGAGACGA 59.582 47.619 0.00 0.00 37.85 4.20
3324 3393 1.806542 CTCCACACAAAATGGGAGACG 59.193 52.381 0.00 0.00 43.41 4.18
3325 3394 3.140325 TCTCCACACAAAATGGGAGAC 57.860 47.619 5.18 0.00 43.94 3.36
3326 3395 2.549992 CGTCTCCACACAAAATGGGAGA 60.550 50.000 5.18 5.18 45.33 3.71
3327 3396 1.806542 CGTCTCCACACAAAATGGGAG 59.193 52.381 0.00 0.00 42.69 4.30
3328 3397 1.142060 ACGTCTCCACACAAAATGGGA 59.858 47.619 0.00 0.00 37.85 4.37
3329 3398 1.266718 CACGTCTCCACACAAAATGGG 59.733 52.381 0.00 0.00 37.85 4.00
3330 3399 1.946768 ACACGTCTCCACACAAAATGG 59.053 47.619 0.00 0.00 38.71 3.16
3331 3400 2.872245 AGACACGTCTCCACACAAAATG 59.128 45.455 0.00 0.00 34.17 2.32
3332 3401 2.872245 CAGACACGTCTCCACACAAAAT 59.128 45.455 0.00 0.00 37.98 1.82
3333 3402 2.093921 TCAGACACGTCTCCACACAAAA 60.094 45.455 0.00 0.00 37.98 2.44
3334 3403 1.478916 TCAGACACGTCTCCACACAAA 59.521 47.619 0.00 0.00 37.98 2.83
3335 3404 1.107945 TCAGACACGTCTCCACACAA 58.892 50.000 0.00 0.00 37.98 3.33
3336 3405 0.384309 GTCAGACACGTCTCCACACA 59.616 55.000 0.00 0.00 37.98 3.72
3337 3406 0.669077 AGTCAGACACGTCTCCACAC 59.331 55.000 2.66 0.00 37.98 3.82
3338 3407 2.265589 TAGTCAGACACGTCTCCACA 57.734 50.000 2.66 0.00 37.98 4.17
3339 3408 3.851976 AATAGTCAGACACGTCTCCAC 57.148 47.619 2.66 0.00 37.98 4.02
3340 3409 4.866508 AAAATAGTCAGACACGTCTCCA 57.133 40.909 2.66 0.00 37.98 3.86
3374 3443 3.377172 AGTCGGGTTATTTAGCATTGTGC 59.623 43.478 0.00 0.00 45.46 4.57
3375 3444 6.671614 TTAGTCGGGTTATTTAGCATTGTG 57.328 37.500 0.00 0.00 0.00 3.33
3376 3445 7.690952 TTTTAGTCGGGTTATTTAGCATTGT 57.309 32.000 0.00 0.00 0.00 2.71
3377 3446 8.402472 TGATTTTAGTCGGGTTATTTAGCATTG 58.598 33.333 0.00 0.00 0.00 2.82
3378 3447 8.514330 TGATTTTAGTCGGGTTATTTAGCATT 57.486 30.769 0.00 0.00 0.00 3.56
3379 3448 8.567948 CATGATTTTAGTCGGGTTATTTAGCAT 58.432 33.333 0.00 0.00 0.00 3.79
3380 3449 7.771361 TCATGATTTTAGTCGGGTTATTTAGCA 59.229 33.333 0.00 0.00 0.00 3.49
3381 3450 8.149973 TCATGATTTTAGTCGGGTTATTTAGC 57.850 34.615 0.00 0.00 0.00 3.09
3421 3490 8.883731 CATCTTATATTTGTGAACCGAGAAAGT 58.116 33.333 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.