Multiple sequence alignment - TraesCS2D01G449200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G449200 chr2D 100.000 3782 0 0 1 3782 558967107 558963326 0.000000e+00 6985.0
1 TraesCS2D01G449200 chr2D 84.188 234 25 11 2117 2345 558969637 558969411 2.290000e-52 217.0
2 TraesCS2D01G449200 chr2D 97.778 45 0 1 3304 3348 558963759 558963716 4.050000e-10 76.8
3 TraesCS2D01G449200 chr2D 97.778 45 0 1 3349 3392 558963804 558963760 4.050000e-10 76.8
4 TraesCS2D01G449200 chr2A 87.892 1115 80 21 1763 2831 699570591 699569486 0.000000e+00 1260.0
5 TraesCS2D01G449200 chr2A 92.338 509 39 0 93 601 699571700 699571192 0.000000e+00 725.0
6 TraesCS2D01G449200 chr2A 94.247 365 17 4 1079 1442 699571193 699570832 4.270000e-154 555.0
7 TraesCS2D01G449200 chr2A 87.558 434 46 6 3350 3782 699568641 699568215 2.620000e-136 496.0
8 TraesCS2D01G449200 chr2A 96.371 248 7 2 1458 1704 699570849 699570603 1.260000e-109 407.0
9 TraesCS2D01G449200 chr2A 88.827 179 16 3 2117 2293 699575479 699575303 2.290000e-52 217.0
10 TraesCS2D01G449200 chr2A 100.000 59 0 0 2837 2895 699569401 699569343 3.990000e-20 110.0
11 TraesCS2D01G449200 chr1B 81.430 1497 192 37 1 1439 656148070 656149538 0.000000e+00 1146.0
12 TraesCS2D01G449200 chr2B 88.889 891 72 11 8 877 668042994 668042110 0.000000e+00 1072.0
13 TraesCS2D01G449200 chr2B 89.605 683 38 12 1783 2439 668030372 668029697 0.000000e+00 837.0
14 TraesCS2D01G449200 chr2B 89.943 348 17 6 871 1218 668033289 668032960 2.090000e-117 433.0
15 TraesCS2D01G449200 chr2B 94.558 147 6 2 1206 1351 668032912 668032767 3.800000e-55 226.0
16 TraesCS2D01G449200 chr2B 82.906 234 28 11 2117 2345 668048082 668047856 2.300000e-47 200.0
17 TraesCS2D01G449200 chr2B 87.500 120 11 2 2535 2653 668029053 668028937 6.590000e-28 135.0
18 TraesCS2D01G449200 chr2B 86.290 124 12 3 3659 3782 668027887 668027769 3.070000e-26 130.0
19 TraesCS2D01G449200 chr2B 93.976 83 4 1 1458 1539 668030464 668030382 1.430000e-24 124.0
20 TraesCS2D01G449200 chrUn 81.926 1101 132 30 376 1439 1257236 1258306 0.000000e+00 869.0
21 TraesCS2D01G449200 chrUn 82.134 403 57 8 1 388 1251646 1252048 7.830000e-87 331.0
22 TraesCS2D01G449200 chr6D 100.000 35 0 0 2895 2929 168772799 168772833 8.770000e-07 65.8
23 TraesCS2D01G449200 chr6A 100.000 35 0 0 2895 2929 84440165 84440199 8.770000e-07 65.8
24 TraesCS2D01G449200 chr6A 100.000 35 0 0 2895 2929 608877220 608877186 8.770000e-07 65.8
25 TraesCS2D01G449200 chr5D 100.000 35 0 0 2895 2929 324426210 324426244 8.770000e-07 65.8
26 TraesCS2D01G449200 chr5D 100.000 35 0 0 2895 2929 541030943 541030977 8.770000e-07 65.8
27 TraesCS2D01G449200 chr4D 100.000 35 0 0 2895 2929 123429730 123429764 8.770000e-07 65.8
28 TraesCS2D01G449200 chr1D 100.000 35 0 0 2895 2929 260388077 260388111 8.770000e-07 65.8
29 TraesCS2D01G449200 chr1D 100.000 35 0 0 2895 2929 351073429 351073395 8.770000e-07 65.8
30 TraesCS2D01G449200 chr1A 100.000 35 0 0 2895 2929 43250485 43250519 8.770000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G449200 chr2D 558963326 558967107 3781 True 2379.533333 6985 98.518667 1 3782 3 chr2D.!!$R2 3781
1 TraesCS2D01G449200 chr2A 699568215 699575479 7264 True 538.571429 1260 92.461857 93 3782 7 chr2A.!!$R1 3689
2 TraesCS2D01G449200 chr1B 656148070 656149538 1468 False 1146.000000 1146 81.430000 1 1439 1 chr1B.!!$F1 1438
3 TraesCS2D01G449200 chr2B 668042110 668042994 884 True 1072.000000 1072 88.889000 8 877 1 chr2B.!!$R1 869
4 TraesCS2D01G449200 chr2B 668027769 668033289 5520 True 314.166667 837 90.312000 871 3782 6 chr2B.!!$R3 2911
5 TraesCS2D01G449200 chrUn 1257236 1258306 1070 False 869.000000 869 81.926000 376 1439 1 chrUn.!!$F2 1063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 4385 0.248289 GGGTGCAAGGTTAGCGAGTA 59.752 55.000 0.00 0.0 33.85 2.59 F
764 4492 1.274167 CACTTTGGAATGCTGCCACAT 59.726 47.619 0.00 0.0 34.56 3.21 F
1759 7801 0.036732 GAGTGGTTCCACATGGCAGA 59.963 55.000 21.71 0.0 39.24 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 7782 0.036732 TCTGCCATGTGGAACCACTC 59.963 55.0 21.98 10.81 46.3 3.51 R
2472 8559 0.039256 TCGTGCACCAACTACGTACC 60.039 55.0 12.15 0.00 38.8 3.34 R
3073 10219 0.179000 GGATGTGACGGAGGAAGCAT 59.821 55.0 0.00 0.00 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.945668 GCTACTGGCCATGTTTTCTAGG 59.054 50.000 5.51 0.00 34.27 3.02
22 23 3.370527 GCTACTGGCCATGTTTTCTAGGA 60.371 47.826 5.51 0.00 34.27 2.94
24 25 2.290960 ACTGGCCATGTTTTCTAGGACC 60.291 50.000 5.51 0.00 0.00 4.46
25 26 1.992557 TGGCCATGTTTTCTAGGACCT 59.007 47.619 0.00 0.00 0.00 3.85
27 28 2.239907 GGCCATGTTTTCTAGGACCTCT 59.760 50.000 0.00 0.00 0.00 3.69
29 30 4.443621 GCCATGTTTTCTAGGACCTCTAC 58.556 47.826 0.00 0.00 0.00 2.59
30 31 4.162509 GCCATGTTTTCTAGGACCTCTACT 59.837 45.833 0.00 0.00 0.00 2.57
31 32 5.338463 GCCATGTTTTCTAGGACCTCTACTT 60.338 44.000 0.00 0.00 0.00 2.24
32 33 6.109359 CCATGTTTTCTAGGACCTCTACTTG 58.891 44.000 0.00 0.00 0.00 3.16
33 34 6.295916 CCATGTTTTCTAGGACCTCTACTTGT 60.296 42.308 0.00 0.00 0.00 3.16
34 35 6.342338 TGTTTTCTAGGACCTCTACTTGTC 57.658 41.667 0.00 0.00 0.00 3.18
35 36 5.048224 TGTTTTCTAGGACCTCTACTTGTCG 60.048 44.000 0.00 0.00 32.19 4.35
37 38 1.677052 CTAGGACCTCTACTTGTCGGC 59.323 57.143 0.00 0.00 32.19 5.54
38 39 0.251653 AGGACCTCTACTTGTCGGCA 60.252 55.000 0.00 0.00 32.19 5.69
39 40 0.606604 GGACCTCTACTTGTCGGCAA 59.393 55.000 0.91 0.91 32.19 4.52
40 41 1.207329 GGACCTCTACTTGTCGGCAAT 59.793 52.381 1.35 0.00 33.65 3.56
43 44 3.362706 ACCTCTACTTGTCGGCAATAGA 58.637 45.455 1.35 11.55 33.65 1.98
45 46 4.406003 ACCTCTACTTGTCGGCAATAGAAT 59.594 41.667 1.35 2.19 33.65 2.40
46 47 5.597182 ACCTCTACTTGTCGGCAATAGAATA 59.403 40.000 1.35 0.00 33.65 1.75
47 48 6.267928 ACCTCTACTTGTCGGCAATAGAATAT 59.732 38.462 1.35 0.00 33.65 1.28
48 49 7.450634 ACCTCTACTTGTCGGCAATAGAATATA 59.549 37.037 1.35 0.00 33.65 0.86
49 50 8.470805 CCTCTACTTGTCGGCAATAGAATATAT 58.529 37.037 1.35 0.00 33.65 0.86
55 56 9.181805 CTTGTCGGCAATAGAATATATATACCG 57.818 37.037 1.35 7.49 35.42 4.02
58 59 7.537991 GTCGGCAATAGAATATATATACCGAGC 59.462 40.741 13.93 8.13 39.85 5.03
59 60 7.447545 TCGGCAATAGAATATATATACCGAGCT 59.552 37.037 10.95 0.00 36.95 4.09
60 61 8.082852 CGGCAATAGAATATATATACCGAGCTT 58.917 37.037 7.91 0.00 35.81 3.74
62 63 9.413048 GCAATAGAATATATATACCGAGCTTCC 57.587 37.037 0.00 0.00 0.00 3.46
72 73 2.964911 CGAGCTTCCGGAATGACTC 58.035 57.895 19.21 21.51 0.00 3.36
73 74 0.457851 CGAGCTTCCGGAATGACTCT 59.542 55.000 26.56 16.55 0.00 3.24
74 75 1.134965 CGAGCTTCCGGAATGACTCTT 60.135 52.381 26.56 8.79 0.00 2.85
75 76 2.275318 GAGCTTCCGGAATGACTCTTG 58.725 52.381 24.26 11.56 0.00 3.02
76 77 1.625818 AGCTTCCGGAATGACTCTTGT 59.374 47.619 19.21 0.00 0.00 3.16
77 78 2.003301 GCTTCCGGAATGACTCTTGTC 58.997 52.381 19.21 0.00 43.20 3.18
78 79 2.354203 GCTTCCGGAATGACTCTTGTCT 60.354 50.000 19.21 0.00 43.29 3.41
79 80 3.866449 GCTTCCGGAATGACTCTTGTCTT 60.866 47.826 19.21 0.00 43.29 3.01
80 81 4.620803 GCTTCCGGAATGACTCTTGTCTTA 60.621 45.833 19.21 0.00 43.29 2.10
81 82 4.720649 TCCGGAATGACTCTTGTCTTAG 57.279 45.455 0.00 0.00 43.29 2.18
83 84 4.956700 TCCGGAATGACTCTTGTCTTAGAT 59.043 41.667 0.00 0.00 43.29 1.98
84 85 5.422331 TCCGGAATGACTCTTGTCTTAGATT 59.578 40.000 0.00 0.00 43.29 2.40
85 86 6.070767 TCCGGAATGACTCTTGTCTTAGATTT 60.071 38.462 0.00 0.00 43.29 2.17
86 87 6.595716 CCGGAATGACTCTTGTCTTAGATTTT 59.404 38.462 0.00 0.00 43.29 1.82
88 89 7.413438 CGGAATGACTCTTGTCTTAGATTTTGG 60.413 40.741 0.00 0.00 43.29 3.28
89 90 7.148171 GGAATGACTCTTGTCTTAGATTTTGGG 60.148 40.741 0.00 0.00 43.29 4.12
90 91 6.187727 TGACTCTTGTCTTAGATTTTGGGT 57.812 37.500 0.00 0.00 43.29 4.51
91 92 6.231211 TGACTCTTGTCTTAGATTTTGGGTC 58.769 40.000 0.00 0.00 43.29 4.46
93 94 5.310857 ACTCTTGTCTTAGATTTTGGGTCCT 59.689 40.000 0.00 0.00 0.00 3.85
96 97 5.576563 TGTCTTAGATTTTGGGTCCTCAA 57.423 39.130 0.00 0.00 0.00 3.02
103 3792 5.458595 AGATTTTGGGTCCTCAAGTTTCTT 58.541 37.500 0.00 0.00 0.00 2.52
108 3797 4.714632 TGGGTCCTCAAGTTTCTTAACAG 58.285 43.478 0.00 0.00 36.70 3.16
115 3804 4.193090 TCAAGTTTCTTAACAGTTCCGCA 58.807 39.130 0.00 0.00 36.70 5.69
142 3831 1.442148 GGGTGGAGTATGGCGAGAC 59.558 63.158 0.00 0.00 0.00 3.36
178 3867 5.376756 TCACCTGATGATGATGATTCCAA 57.623 39.130 0.00 0.00 29.99 3.53
241 3943 3.593048 ACCTGGTTGCTGGTGGAT 58.407 55.556 0.00 0.00 34.90 3.41
287 3989 7.994911 TGTATGCTAATTTGAGGATGTCAGATT 59.005 33.333 0.00 0.00 41.63 2.40
291 3993 7.496920 TGCTAATTTGAGGATGTCAGATTACAG 59.503 37.037 0.00 0.00 39.90 2.74
302 4004 6.850752 TGTCAGATTACAGTGTTGAGGATA 57.149 37.500 0.00 0.00 0.00 2.59
342 4044 0.405585 ACAGTGGGGGAGAATGTTGG 59.594 55.000 0.00 0.00 0.00 3.77
367 4069 3.734463 TGCGTTCTTGTAGATTGGTTGA 58.266 40.909 0.00 0.00 0.00 3.18
425 4127 5.882553 TGCGTAAAGTGTACGATATGAGAA 58.117 37.500 17.13 0.00 42.94 2.87
465 4173 5.825151 TGTGTGGTGTTTGTTTGATGATCTA 59.175 36.000 0.00 0.00 0.00 1.98
587 4299 4.345257 AGTGTAGAGGAGAAACATGTGTGT 59.655 41.667 0.00 0.00 41.28 3.72
664 4384 1.003718 GGGTGCAAGGTTAGCGAGT 60.004 57.895 0.00 0.00 33.85 4.18
665 4385 0.248289 GGGTGCAAGGTTAGCGAGTA 59.752 55.000 0.00 0.00 33.85 2.59
670 4390 2.163815 TGCAAGGTTAGCGAGTAGAGAC 59.836 50.000 0.00 0.00 33.85 3.36
706 4426 5.422331 AGTCGAGGTGGATAAGAGAAATGAA 59.578 40.000 0.00 0.00 0.00 2.57
760 4488 3.243704 TGTTAACACTTTGGAATGCTGCC 60.244 43.478 3.59 0.00 0.00 4.85
764 4492 1.274167 CACTTTGGAATGCTGCCACAT 59.726 47.619 0.00 0.00 34.56 3.21
961 4695 7.430441 GTCTATTGGGTTTCTTTTGCTTGTAA 58.570 34.615 0.00 0.00 0.00 2.41
984 4718 1.886542 AGGAAAGTTGGGTCGAAATGC 59.113 47.619 0.00 0.00 0.00 3.56
1023 4757 6.936335 TGTGAACACATTACACATGAGATCTT 59.064 34.615 0.00 0.00 39.17 2.40
1037 4771 9.649167 CACATGAGATCTTATAATGTGCTATGA 57.351 33.333 19.79 0.00 40.99 2.15
1110 4844 8.644374 TTGCCTTGGTTACTCAATTTATAAGT 57.356 30.769 0.00 0.00 0.00 2.24
1204 4938 6.478129 ACATTTCCAAAAATCATGCCTTCAT 58.522 32.000 0.00 0.00 32.69 2.57
1236 5029 8.073768 TCGAACATTTTTAGAGAAATGACAACC 58.926 33.333 15.02 1.93 45.47 3.77
1340 5152 3.965292 TTAGGACAGTAAGCTCGATCG 57.035 47.619 9.36 9.36 0.00 3.69
1440 7481 9.945904 CTTAATATCCCTTCTTATCCAGTAACC 57.054 37.037 0.00 0.00 0.00 2.85
1441 7482 9.684702 TTAATATCCCTTCTTATCCAGTAACCT 57.315 33.333 0.00 0.00 0.00 3.50
1442 7483 8.582891 AATATCCCTTCTTATCCAGTAACCTT 57.417 34.615 0.00 0.00 0.00 3.50
1443 7484 6.910259 ATCCCTTCTTATCCAGTAACCTTT 57.090 37.500 0.00 0.00 0.00 3.11
1444 7485 6.713731 TCCCTTCTTATCCAGTAACCTTTT 57.286 37.500 0.00 0.00 0.00 2.27
1445 7486 7.098845 TCCCTTCTTATCCAGTAACCTTTTT 57.901 36.000 0.00 0.00 0.00 1.94
1520 7561 6.968131 TTAAACTGAACATCTTCCAGATCG 57.032 37.500 0.00 0.00 31.32 3.69
1529 7571 1.712977 CTTCCAGATCGCAAGCAGGC 61.713 60.000 0.00 0.00 37.18 4.85
1583 7625 3.405170 AATCGTCCGAAATCAATGTGC 57.595 42.857 0.00 0.00 0.00 4.57
1596 7638 2.187100 CAATGTGCCACCCCCTATTTT 58.813 47.619 0.00 0.00 0.00 1.82
1745 7787 8.870160 TTATTTTGAGACATGTTTTTGAGTGG 57.130 30.769 0.00 0.00 0.00 4.00
1746 7788 5.913137 TTTGAGACATGTTTTTGAGTGGT 57.087 34.783 0.00 0.00 0.00 4.16
1747 7789 5.913137 TTGAGACATGTTTTTGAGTGGTT 57.087 34.783 0.00 0.00 0.00 3.67
1748 7790 5.499139 TGAGACATGTTTTTGAGTGGTTC 57.501 39.130 0.00 0.00 0.00 3.62
1749 7791 4.338118 TGAGACATGTTTTTGAGTGGTTCC 59.662 41.667 0.00 0.00 0.00 3.62
1750 7792 4.277476 AGACATGTTTTTGAGTGGTTCCA 58.723 39.130 0.00 0.00 0.00 3.53
1751 7793 4.097892 AGACATGTTTTTGAGTGGTTCCAC 59.902 41.667 13.45 13.45 37.23 4.02
1752 7794 3.766591 ACATGTTTTTGAGTGGTTCCACA 59.233 39.130 21.71 1.76 39.24 4.17
1753 7795 4.405358 ACATGTTTTTGAGTGGTTCCACAT 59.595 37.500 21.71 8.74 39.24 3.21
1754 7796 4.383850 TGTTTTTGAGTGGTTCCACATG 57.616 40.909 21.71 0.00 39.24 3.21
1755 7797 3.131933 TGTTTTTGAGTGGTTCCACATGG 59.868 43.478 21.71 0.00 39.24 3.66
1756 7798 1.327303 TTTGAGTGGTTCCACATGGC 58.673 50.000 21.71 9.95 39.24 4.40
1757 7799 0.184692 TTGAGTGGTTCCACATGGCA 59.815 50.000 21.71 12.02 39.24 4.92
1758 7800 0.250858 TGAGTGGTTCCACATGGCAG 60.251 55.000 21.71 0.00 39.24 4.85
1759 7801 0.036732 GAGTGGTTCCACATGGCAGA 59.963 55.000 21.71 0.00 39.24 4.26
1760 7802 0.700564 AGTGGTTCCACATGGCAGAT 59.299 50.000 21.71 0.00 39.24 2.90
1761 7803 1.098050 GTGGTTCCACATGGCAGATC 58.902 55.000 16.01 0.00 36.97 2.75
1806 7848 1.800681 GCACAGGCCCAACGTTATC 59.199 57.895 0.00 0.00 0.00 1.75
1808 7850 1.078708 ACAGGCCCAACGTTATCGG 60.079 57.895 0.00 1.86 41.85 4.18
1846 7888 4.680237 CCACCTCAAGCCGCGACA 62.680 66.667 8.23 0.00 0.00 4.35
1857 7899 4.827087 CGCGACATGCAGCTCCCT 62.827 66.667 0.00 0.00 46.97 4.20
1867 7909 1.685077 CAGCTCCCTCTGCTCTGGA 60.685 63.158 0.00 0.00 38.92 3.86
1955 7997 1.028905 TCCGGCAAGAAACCAAACTG 58.971 50.000 0.00 0.00 0.00 3.16
2001 8046 1.880221 CGCCTACAAATCCACCACACA 60.880 52.381 0.00 0.00 0.00 3.72
2016 8065 1.596260 CACACACAAGAGCTCACACAG 59.404 52.381 17.77 4.10 0.00 3.66
2026 8075 0.250038 GCTCACACAGGCAAGACAGA 60.250 55.000 0.00 0.00 0.00 3.41
2055 8109 1.118965 ATCCACACGACCAGACACCA 61.119 55.000 0.00 0.00 0.00 4.17
2065 8119 3.911698 AGACACCAGCACGCGACA 61.912 61.111 15.93 0.00 0.00 4.35
2068 8122 3.268603 CACCAGCACGCGACACAA 61.269 61.111 15.93 0.00 0.00 3.33
2074 8128 3.414700 CACGCGACACAAGAGGCC 61.415 66.667 15.93 0.00 0.00 5.19
2075 8129 3.616721 ACGCGACACAAGAGGCCT 61.617 61.111 15.93 3.86 0.00 5.19
2088 8145 1.977293 GAGGCCTTTGGAGGAGCGAT 61.977 60.000 6.77 0.00 46.74 4.58
2093 8150 1.482593 CCTTTGGAGGAGCGATACACT 59.517 52.381 0.00 0.00 46.74 3.55
2094 8151 2.693591 CCTTTGGAGGAGCGATACACTA 59.306 50.000 0.00 0.00 46.74 2.74
2095 8152 3.491104 CCTTTGGAGGAGCGATACACTAC 60.491 52.174 0.00 0.00 46.74 2.73
2096 8153 2.430248 TGGAGGAGCGATACACTACA 57.570 50.000 0.00 0.00 0.00 2.74
2097 8154 2.022195 TGGAGGAGCGATACACTACAC 58.978 52.381 0.00 0.00 0.00 2.90
2098 8155 1.002684 GGAGGAGCGATACACTACACG 60.003 57.143 0.00 0.00 0.00 4.49
2444 8531 1.764054 CCAGGGGAGCAGGGTCTAG 60.764 68.421 0.00 0.00 0.00 2.43
2448 8535 1.275421 GGGGAGCAGGGTCTAGCTTT 61.275 60.000 0.00 0.00 42.04 3.51
2469 8556 0.542232 AGTCTGTAACCTGCCCGTCT 60.542 55.000 0.00 0.00 0.00 4.18
2472 8559 0.670546 CTGTAACCTGCCCGTCTGTG 60.671 60.000 0.00 0.00 0.00 3.66
2486 9182 2.669364 GTCTGTGGTACGTAGTTGGTG 58.331 52.381 0.00 0.00 37.78 4.17
2530 9226 0.329931 ACACCCATGTGCCGGAATAA 59.670 50.000 5.05 0.00 46.86 1.40
2608 9304 6.961359 TGAAGTTCGATTTCGTATGTTGAT 57.039 33.333 0.00 0.00 40.80 2.57
2638 9334 4.954202 TCTTTCTTAGGGCATCTCTAACGA 59.046 41.667 0.00 0.00 0.00 3.85
2653 9349 4.124238 TCTAACGAACCCTCAAAACACTG 58.876 43.478 0.00 0.00 0.00 3.66
2664 9360 2.608546 TCAAAACACTGGTAAACGTCCG 59.391 45.455 0.00 0.00 0.00 4.79
2682 9378 2.049433 GACCACACACGTCCCTCG 60.049 66.667 0.00 0.00 46.00 4.63
2692 9388 1.295423 CGTCCCTCGAAACACCCAT 59.705 57.895 0.00 0.00 42.86 4.00
2696 9392 2.745821 GTCCCTCGAAACACCCATAAAC 59.254 50.000 0.00 0.00 0.00 2.01
2697 9393 2.089201 CCCTCGAAACACCCATAAACC 58.911 52.381 0.00 0.00 0.00 3.27
2698 9394 2.089201 CCTCGAAACACCCATAAACCC 58.911 52.381 0.00 0.00 0.00 4.11
2699 9395 1.735571 CTCGAAACACCCATAAACCCG 59.264 52.381 0.00 0.00 0.00 5.28
2700 9396 1.072015 TCGAAACACCCATAAACCCGT 59.928 47.619 0.00 0.00 0.00 5.28
2701 9397 2.301296 TCGAAACACCCATAAACCCGTA 59.699 45.455 0.00 0.00 0.00 4.02
2702 9398 3.072944 CGAAACACCCATAAACCCGTAA 58.927 45.455 0.00 0.00 0.00 3.18
2705 9401 2.794103 ACACCCATAAACCCGTAAACC 58.206 47.619 0.00 0.00 0.00 3.27
2706 9402 2.107901 ACACCCATAAACCCGTAAACCA 59.892 45.455 0.00 0.00 0.00 3.67
2708 9404 3.573110 CACCCATAAACCCGTAAACCAAA 59.427 43.478 0.00 0.00 0.00 3.28
2714 9428 4.642445 AAACCCGTAAACCAAAGAGTTG 57.358 40.909 0.00 0.00 34.25 3.16
2718 9432 3.497262 CCCGTAAACCAAAGAGTTGAGAC 59.503 47.826 0.00 0.00 36.83 3.36
2725 9439 5.019785 ACCAAAGAGTTGAGACGTAGTTT 57.980 39.130 0.00 0.00 37.77 2.66
2731 9445 9.610482 CAAAGAGTTGAGACGTAGTTTGCCATC 62.610 44.444 0.00 0.00 37.77 3.51
2765 9479 5.468409 TCTTAATTGTCTGCGAACATGTTCA 59.532 36.000 32.06 17.35 39.46 3.18
2801 9515 3.922910 TCGCAAATTGGATGCAAATCAA 58.077 36.364 2.94 0.00 44.01 2.57
2802 9516 4.313282 TCGCAAATTGGATGCAAATCAAA 58.687 34.783 2.94 0.00 44.01 2.69
2831 9545 8.288217 TGTTTACAGTTCTTGTGTTTGTTTTC 57.712 30.769 0.00 0.00 41.10 2.29
2832 9546 7.382759 TGTTTACAGTTCTTGTGTTTGTTTTCC 59.617 33.333 0.00 0.00 41.10 3.13
2834 9548 5.469479 ACAGTTCTTGTGTTTGTTTTCCTG 58.531 37.500 0.00 0.00 38.99 3.86
2835 9549 5.010617 ACAGTTCTTGTGTTTGTTTTCCTGT 59.989 36.000 0.00 0.00 38.99 4.00
2893 9856 4.278170 TCGTCACCGAACTCTAAAACCTTA 59.722 41.667 0.00 0.00 40.86 2.69
2894 9857 5.047802 TCGTCACCGAACTCTAAAACCTTAT 60.048 40.000 0.00 0.00 40.86 1.73
2895 9858 5.061808 CGTCACCGAACTCTAAAACCTTATG 59.938 44.000 0.00 0.00 35.63 1.90
2896 9859 5.350640 GTCACCGAACTCTAAAACCTTATGG 59.649 44.000 0.00 0.00 39.83 2.74
2897 9860 4.634443 CACCGAACTCTAAAACCTTATGGG 59.366 45.833 0.00 0.00 41.89 4.00
2913 9876 7.477945 CCTTATGGGTAGGTAGGTTATGTAG 57.522 44.000 0.00 0.00 0.00 2.74
2914 9877 6.439692 CCTTATGGGTAGGTAGGTTATGTAGG 59.560 46.154 0.00 0.00 0.00 3.18
2915 9878 3.580039 TGGGTAGGTAGGTTATGTAGGC 58.420 50.000 0.00 0.00 0.00 3.93
2916 9879 3.208234 TGGGTAGGTAGGTTATGTAGGCT 59.792 47.826 0.00 0.00 0.00 4.58
2917 9880 4.419875 TGGGTAGGTAGGTTATGTAGGCTA 59.580 45.833 0.00 0.00 0.00 3.93
2918 9881 4.769488 GGGTAGGTAGGTTATGTAGGCTAC 59.231 50.000 17.76 17.76 0.00 3.58
2919 9882 5.388654 GGTAGGTAGGTTATGTAGGCTACA 58.611 45.833 28.04 28.04 43.80 2.74
2920 9883 5.835280 GGTAGGTAGGTTATGTAGGCTACAA 59.165 44.000 29.35 16.42 42.76 2.41
2921 9884 5.866159 AGGTAGGTTATGTAGGCTACAAC 57.134 43.478 29.35 22.76 42.76 3.32
2922 9885 5.526434 AGGTAGGTTATGTAGGCTACAACT 58.474 41.667 29.35 23.96 42.76 3.16
2923 9886 5.363005 AGGTAGGTTATGTAGGCTACAACTG 59.637 44.000 29.35 0.00 42.76 3.16
2924 9887 5.128335 GGTAGGTTATGTAGGCTACAACTGT 59.872 44.000 29.35 16.34 42.76 3.55
2925 9888 5.757099 AGGTTATGTAGGCTACAACTGTT 57.243 39.130 29.35 15.98 42.76 3.16
2926 9889 5.731591 AGGTTATGTAGGCTACAACTGTTC 58.268 41.667 29.35 16.65 42.76 3.18
2930 9893 7.120726 GGTTATGTAGGCTACAACTGTTCATTT 59.879 37.037 29.35 12.53 42.76 2.32
2963 9986 8.117813 TGTGTCTAAAACCTTATTCCAATTCC 57.882 34.615 0.00 0.00 0.00 3.01
2971 10008 3.627577 CCTTATTCCAATTCCTGTGTCCG 59.372 47.826 0.00 0.00 0.00 4.79
2972 10009 2.879103 ATTCCAATTCCTGTGTCCGT 57.121 45.000 0.00 0.00 0.00 4.69
2973 10010 2.649531 TTCCAATTCCTGTGTCCGTT 57.350 45.000 0.00 0.00 0.00 4.44
2974 10011 2.649531 TCCAATTCCTGTGTCCGTTT 57.350 45.000 0.00 0.00 0.00 3.60
2975 10012 2.938838 TCCAATTCCTGTGTCCGTTTT 58.061 42.857 0.00 0.00 0.00 2.43
2976 10013 3.292460 TCCAATTCCTGTGTCCGTTTTT 58.708 40.909 0.00 0.00 0.00 1.94
2977 10014 3.316868 TCCAATTCCTGTGTCCGTTTTTC 59.683 43.478 0.00 0.00 0.00 2.29
2978 10015 3.067461 CCAATTCCTGTGTCCGTTTTTCA 59.933 43.478 0.00 0.00 0.00 2.69
2989 10026 5.234116 GTGTCCGTTTTTCAGCAAATCAAAT 59.766 36.000 0.00 0.00 0.00 2.32
3007 10044 4.837860 TCAAATGCACAAATTAGGGAAGGT 59.162 37.500 0.00 0.00 0.00 3.50
3008 10045 5.306678 TCAAATGCACAAATTAGGGAAGGTT 59.693 36.000 0.00 0.00 0.00 3.50
3009 10046 4.806640 ATGCACAAATTAGGGAAGGTTG 57.193 40.909 0.00 0.00 0.00 3.77
3010 10047 3.571590 TGCACAAATTAGGGAAGGTTGT 58.428 40.909 0.00 0.00 32.78 3.32
3011 10048 3.572255 TGCACAAATTAGGGAAGGTTGTC 59.428 43.478 0.00 0.00 30.20 3.18
3013 10050 3.190535 CACAAATTAGGGAAGGTTGTCCG 59.809 47.826 0.00 0.00 38.72 4.79
3014 10051 2.124277 AATTAGGGAAGGTTGTCCGC 57.876 50.000 0.00 0.00 38.72 5.54
3015 10052 0.255033 ATTAGGGAAGGTTGTCCGCC 59.745 55.000 0.00 0.00 38.72 6.13
3016 10053 1.128809 TTAGGGAAGGTTGTCCGCCA 61.129 55.000 0.00 0.00 38.72 5.69
3017 10054 1.128809 TAGGGAAGGTTGTCCGCCAA 61.129 55.000 0.00 0.00 38.72 4.52
3018 10055 1.971695 GGGAAGGTTGTCCGCCAAG 60.972 63.158 0.00 0.00 38.72 3.61
3019 10056 1.228154 GGAAGGTTGTCCGCCAAGT 60.228 57.895 0.00 0.00 39.05 3.16
3039 10185 7.168135 GCCAAGTCAAACTCTAAAATCTGTTTG 59.832 37.037 10.13 10.13 45.95 2.93
3040 10186 8.190784 CCAAGTCAAACTCTAAAATCTGTTTGT 58.809 33.333 14.33 0.00 45.27 2.83
3045 10191 8.181573 TCAAACTCTAAAATCTGTTTGTGTCAC 58.818 33.333 14.33 0.00 45.27 3.67
3050 10196 4.446857 AAATCTGTTTGTGTCACGTACG 57.553 40.909 15.01 15.01 0.00 3.67
3063 10209 5.229887 GTGTCACGTACGTCAAACTCTAAAA 59.770 40.000 19.94 0.00 0.00 1.52
3066 10212 4.051237 ACGTACGTCAAACTCTAAAACCC 58.949 43.478 16.72 0.00 0.00 4.11
3068 10214 4.149396 CGTACGTCAAACTCTAAAACCCTG 59.851 45.833 7.22 0.00 0.00 4.45
3070 10216 5.280654 ACGTCAAACTCTAAAACCCTGTA 57.719 39.130 0.00 0.00 0.00 2.74
3072 10218 4.450080 CGTCAAACTCTAAAACCCTGTACC 59.550 45.833 0.00 0.00 0.00 3.34
3073 10219 5.370679 GTCAAACTCTAAAACCCTGTACCA 58.629 41.667 0.00 0.00 0.00 3.25
3074 10220 6.002082 GTCAAACTCTAAAACCCTGTACCAT 58.998 40.000 0.00 0.00 0.00 3.55
3075 10221 6.001460 TCAAACTCTAAAACCCTGTACCATG 58.999 40.000 0.00 0.00 0.00 3.66
3076 10222 3.951663 ACTCTAAAACCCTGTACCATGC 58.048 45.455 0.00 0.00 0.00 4.06
3080 10226 2.215942 AAACCCTGTACCATGCTTCC 57.784 50.000 0.00 0.00 0.00 3.46
3122 10283 6.752815 CGCTAAACTCTAAAACCCTCTTCTAG 59.247 42.308 0.00 0.00 0.00 2.43
3130 10291 0.903236 ACCCTCTTCTAGGTTTCCGC 59.097 55.000 0.00 0.00 44.90 5.54
3133 10317 1.405661 CCTCTTCTAGGTTTCCGCCAC 60.406 57.143 0.00 0.00 40.94 5.01
3161 10345 4.563374 GCCATGCCAAACTCTAAAACCATT 60.563 41.667 0.00 0.00 0.00 3.16
3164 10348 6.486320 CCATGCCAAACTCTAAAACCATTTTT 59.514 34.615 0.00 0.00 38.51 1.94
3198 10383 3.939066 TGCTGCTAAAACCCTCTTCTAC 58.061 45.455 0.00 0.00 0.00 2.59
3216 10403 3.343421 GTTTTCGTCACGCCCGCT 61.343 61.111 0.00 0.00 0.00 5.52
3217 10404 2.589442 TTTTCGTCACGCCCGCTT 60.589 55.556 0.00 0.00 0.00 4.68
3237 10425 1.076332 CGCCAAACTCTAAACCCTCG 58.924 55.000 0.00 0.00 0.00 4.63
3314 10582 1.282570 CGTTGCACGGTTCAATGCT 59.717 52.632 0.00 0.00 42.55 3.79
3315 10583 0.998226 CGTTGCACGGTTCAATGCTG 60.998 55.000 0.00 0.00 42.55 4.41
3318 10586 2.176546 CACGGTTCAATGCTGGCG 59.823 61.111 0.00 0.00 0.00 5.69
3319 10587 3.055719 ACGGTTCAATGCTGGCGG 61.056 61.111 0.00 0.00 0.00 6.13
3341 10609 2.413765 GCCGAGAAGCCTACTCCG 59.586 66.667 0.00 0.00 0.00 4.63
3342 10610 2.416432 GCCGAGAAGCCTACTCCGT 61.416 63.158 0.00 0.00 0.00 4.69
3345 10613 1.376543 CGAGAAGCCTACTCCGTACA 58.623 55.000 0.00 0.00 0.00 2.90
3363 10640 4.481112 GGCGGTTCAATGCTGGCG 62.481 66.667 0.00 0.00 0.00 5.69
3386 10664 2.416432 GCCGAGAAGCCTACTCCGT 61.416 63.158 0.00 0.00 0.00 4.69
3389 10667 1.376543 CGAGAAGCCTACTCCGTACA 58.623 55.000 0.00 0.00 0.00 2.90
3398 10676 3.084039 CCTACTCCGTACAGGTGTGTTA 58.916 50.000 16.46 2.62 45.47 2.41
3399 10677 3.698040 CCTACTCCGTACAGGTGTGTTAT 59.302 47.826 16.46 0.00 45.47 1.89
3400 10678 4.883585 CCTACTCCGTACAGGTGTGTTATA 59.116 45.833 16.46 2.10 45.47 0.98
3401 10679 5.533903 CCTACTCCGTACAGGTGTGTTATAT 59.466 44.000 16.46 0.00 45.47 0.86
3402 10680 6.712095 CCTACTCCGTACAGGTGTGTTATATA 59.288 42.308 16.46 0.00 45.47 0.86
3466 10752 1.224075 CTTATGCATGGCTCTGACGG 58.776 55.000 10.16 0.00 0.00 4.79
3468 10754 1.970352 TATGCATGGCTCTGACGGCA 61.970 55.000 10.16 0.00 43.95 5.69
3500 10786 4.906664 ACATATCCTTTCCTCTCTGCTCAT 59.093 41.667 0.00 0.00 0.00 2.90
3509 10795 1.227205 CTCTGCTCATCACCGCTCC 60.227 63.158 0.00 0.00 0.00 4.70
3527 10813 3.550233 GCTCCGTTCATATTCGCTCACTA 60.550 47.826 0.00 0.00 0.00 2.74
3532 10818 6.016527 TCCGTTCATATTCGCTCACTACTATT 60.017 38.462 0.00 0.00 0.00 1.73
3535 10821 7.060059 CGTTCATATTCGCTCACTACTATTGAG 59.940 40.741 0.07 0.07 43.01 3.02
3560 10846 6.252869 GCTTCTTATCTTTTACACGACGATGA 59.747 38.462 0.00 0.00 0.00 2.92
3605 10891 1.123077 CTCCTTCCGGATCCACATCA 58.877 55.000 13.41 0.00 39.01 3.07
3628 10914 3.103911 CCACCGTCGTCGCTGTTC 61.104 66.667 0.00 0.00 35.54 3.18
3630 10916 3.653009 ACCGTCGTCGCTGTTCGA 61.653 61.111 0.00 0.00 46.29 3.71
3657 10943 1.915078 ATCCTCCAAGTCCAAGGCGG 61.915 60.000 0.00 0.00 0.00 6.13
3724 11010 0.691078 AGGAGGAATAGGAGCCGCAA 60.691 55.000 0.00 0.00 0.00 4.85
3728 11014 1.429148 GGAATAGGAGCCGCAACACG 61.429 60.000 0.00 0.00 43.15 4.49
3740 11026 3.923864 AACACGCACGCCTCCTCA 61.924 61.111 0.00 0.00 0.00 3.86
3758 11044 4.680237 CAGAGGCCGCGACAACCA 62.680 66.667 8.23 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.025887 AGGTCCTAGAAAACATGGCCAG 60.026 50.000 13.05 6.08 0.00 4.85
12 13 5.400703 CGACAAGTAGAGGTCCTAGAAAAC 58.599 45.833 0.00 0.00 0.00 2.43
13 14 4.461781 CCGACAAGTAGAGGTCCTAGAAAA 59.538 45.833 0.00 0.00 0.00 2.29
14 15 4.015084 CCGACAAGTAGAGGTCCTAGAAA 58.985 47.826 0.00 0.00 0.00 2.52
15 16 3.618351 CCGACAAGTAGAGGTCCTAGAA 58.382 50.000 0.00 0.00 0.00 2.10
16 17 2.683152 GCCGACAAGTAGAGGTCCTAGA 60.683 54.545 0.00 0.00 0.00 2.43
17 18 1.677052 GCCGACAAGTAGAGGTCCTAG 59.323 57.143 0.00 0.00 0.00 3.02
18 19 1.005097 TGCCGACAAGTAGAGGTCCTA 59.995 52.381 0.00 0.00 0.00 2.94
21 22 2.674796 ATTGCCGACAAGTAGAGGTC 57.325 50.000 0.00 0.00 39.69 3.85
22 23 3.362706 TCTATTGCCGACAAGTAGAGGT 58.637 45.455 0.00 0.00 39.69 3.85
29 30 9.181805 CGGTATATATATTCTATTGCCGACAAG 57.818 37.037 0.00 0.00 39.69 3.16
30 31 8.905850 TCGGTATATATATTCTATTGCCGACAA 58.094 33.333 10.95 0.00 39.42 3.18
31 32 8.454570 TCGGTATATATATTCTATTGCCGACA 57.545 34.615 10.95 0.00 39.42 4.35
32 33 7.537991 GCTCGGTATATATATTCTATTGCCGAC 59.462 40.741 10.95 6.78 39.42 4.79
33 34 7.447545 AGCTCGGTATATATATTCTATTGCCGA 59.552 37.037 13.21 13.21 41.57 5.54
34 35 7.594714 AGCTCGGTATATATATTCTATTGCCG 58.405 38.462 0.00 1.46 37.15 5.69
35 36 9.413048 GAAGCTCGGTATATATATTCTATTGCC 57.587 37.037 0.00 0.00 0.00 4.52
37 38 9.613957 CGGAAGCTCGGTATATATATTCTATTG 57.386 37.037 0.00 0.00 0.00 1.90
38 39 8.794553 CCGGAAGCTCGGTATATATATTCTATT 58.205 37.037 0.00 0.00 44.60 1.73
39 40 8.338072 CCGGAAGCTCGGTATATATATTCTAT 57.662 38.462 0.00 0.00 44.60 1.98
40 41 7.741027 CCGGAAGCTCGGTATATATATTCTA 57.259 40.000 0.00 0.00 44.60 2.10
55 56 2.275318 CAAGAGTCATTCCGGAAGCTC 58.725 52.381 25.98 25.98 0.00 4.09
68 69 5.644206 GGACCCAAAATCTAAGACAAGAGTC 59.356 44.000 0.00 0.00 45.31 3.36
69 70 5.310857 AGGACCCAAAATCTAAGACAAGAGT 59.689 40.000 0.00 0.00 0.00 3.24
70 71 5.810095 AGGACCCAAAATCTAAGACAAGAG 58.190 41.667 0.00 0.00 0.00 2.85
71 72 5.309543 TGAGGACCCAAAATCTAAGACAAGA 59.690 40.000 0.00 0.00 0.00 3.02
72 73 5.560724 TGAGGACCCAAAATCTAAGACAAG 58.439 41.667 0.00 0.00 0.00 3.16
73 74 5.576563 TGAGGACCCAAAATCTAAGACAA 57.423 39.130 0.00 0.00 0.00 3.18
74 75 5.073144 ACTTGAGGACCCAAAATCTAAGACA 59.927 40.000 0.00 0.00 0.00 3.41
75 76 5.561679 ACTTGAGGACCCAAAATCTAAGAC 58.438 41.667 0.00 0.00 0.00 3.01
76 77 5.843019 ACTTGAGGACCCAAAATCTAAGA 57.157 39.130 0.00 0.00 0.00 2.10
77 78 6.717084 AGAAACTTGAGGACCCAAAATCTAAG 59.283 38.462 0.00 0.00 0.00 2.18
78 79 6.610830 AGAAACTTGAGGACCCAAAATCTAA 58.389 36.000 0.00 0.00 0.00 2.10
79 80 6.200878 AGAAACTTGAGGACCCAAAATCTA 57.799 37.500 0.00 0.00 0.00 1.98
80 81 5.066913 AGAAACTTGAGGACCCAAAATCT 57.933 39.130 0.00 0.00 0.00 2.40
81 82 5.791336 AAGAAACTTGAGGACCCAAAATC 57.209 39.130 0.00 0.00 0.00 2.17
83 84 5.952947 TGTTAAGAAACTTGAGGACCCAAAA 59.047 36.000 0.00 0.00 36.51 2.44
84 85 5.511363 TGTTAAGAAACTTGAGGACCCAAA 58.489 37.500 0.00 0.00 36.51 3.28
85 86 5.118729 TGTTAAGAAACTTGAGGACCCAA 57.881 39.130 0.00 0.00 36.51 4.12
86 87 4.165372 ACTGTTAAGAAACTTGAGGACCCA 59.835 41.667 0.00 0.00 36.51 4.51
88 89 5.238868 GGAACTGTTAAGAAACTTGAGGACC 59.761 44.000 0.00 0.00 36.51 4.46
89 90 5.050295 CGGAACTGTTAAGAAACTTGAGGAC 60.050 44.000 0.00 0.00 36.51 3.85
90 91 5.054477 CGGAACTGTTAAGAAACTTGAGGA 58.946 41.667 0.00 0.00 36.51 3.71
91 92 4.319549 GCGGAACTGTTAAGAAACTTGAGG 60.320 45.833 0.00 0.00 36.51 3.86
93 94 4.034742 GTGCGGAACTGTTAAGAAACTTGA 59.965 41.667 0.00 0.00 36.51 3.02
96 97 2.876550 GGTGCGGAACTGTTAAGAAACT 59.123 45.455 0.00 0.00 36.51 2.66
103 3792 2.354303 CCATGTAGGTGCGGAACTGTTA 60.354 50.000 4.04 0.00 0.00 2.41
108 3797 1.451387 CCCCATGTAGGTGCGGAAC 60.451 63.158 0.00 0.00 34.66 3.62
115 3804 2.408565 CATACTCCACCCCATGTAGGT 58.591 52.381 0.00 0.00 38.48 3.08
142 3831 4.713824 TCAGGTGATAACTAGGTGTTCG 57.286 45.455 0.00 0.00 39.89 3.95
178 3867 6.154363 TGTGAAGTTGAAAATTCCTGGAACTT 59.846 34.615 12.11 9.27 34.44 2.66
225 3927 0.962356 GACATCCACCAGCAACCAGG 60.962 60.000 0.00 0.00 0.00 4.45
241 3943 5.518848 ACATCTCTTGCAAACAAATGACA 57.481 34.783 14.24 0.00 34.74 3.58
287 3989 8.306313 ACAGTATCATTATCCTCAACACTGTA 57.694 34.615 0.00 0.00 41.52 2.74
291 3993 8.851145 TCTAGACAGTATCATTATCCTCAACAC 58.149 37.037 0.00 0.00 0.00 3.32
302 4004 9.809096 CACTGTGTTTATCTAGACAGTATCATT 57.191 33.333 11.15 0.00 45.66 2.57
325 4027 0.776080 ACCCAACATTCTCCCCCACT 60.776 55.000 0.00 0.00 0.00 4.00
342 4044 3.252458 ACCAATCTACAAGAACGCAAACC 59.748 43.478 0.00 0.00 0.00 3.27
465 4173 1.376466 ACAAGGAATGTGCGAGGCT 59.624 52.632 0.00 0.00 41.93 4.58
546 4256 2.923655 CACTTCTGTTACGATCACGCAT 59.076 45.455 0.00 0.00 43.96 4.73
549 4259 4.966249 TCTACACTTCTGTTACGATCACG 58.034 43.478 0.00 0.00 45.75 4.35
610 4330 1.001974 CCTCATCGTCCAGTGGAACAA 59.998 52.381 15.09 2.34 44.16 2.83
664 4384 2.764572 GACTTCCCCATTTCCGTCTCTA 59.235 50.000 0.00 0.00 0.00 2.43
665 4385 1.555533 GACTTCCCCATTTCCGTCTCT 59.444 52.381 0.00 0.00 0.00 3.10
670 4390 0.462047 CCTCGACTTCCCCATTTCCG 60.462 60.000 0.00 0.00 0.00 4.30
706 4426 3.612795 AAAAGCCAAACCCTACTCCTT 57.387 42.857 0.00 0.00 0.00 3.36
933 4667 4.524328 AGCAAAAGAAACCCAATAGACCAG 59.476 41.667 0.00 0.00 0.00 4.00
961 4695 0.472471 TTCGACCCAACTTTCCTGCT 59.528 50.000 0.00 0.00 0.00 4.24
984 4718 4.033932 TGTGTTCACAGTTTCTGATTCACG 59.966 41.667 1.23 0.00 35.18 4.35
1023 4757 7.315066 TGAGGAACCATCATAGCACATTATA 57.685 36.000 0.00 0.00 0.00 0.98
1236 5029 6.049955 TCCTATAAAAGCCGGATAATGGAG 57.950 41.667 5.05 0.00 0.00 3.86
1340 5152 4.619336 TGCGACTTGTGTTGTTTTTCTTTC 59.381 37.500 0.00 0.00 0.00 2.62
1446 7487 3.756434 CTGGATAAGAAGACCCGCAAAAA 59.244 43.478 0.00 0.00 0.00 1.94
1447 7488 3.244770 ACTGGATAAGAAGACCCGCAAAA 60.245 43.478 0.00 0.00 0.00 2.44
1448 7489 2.304761 ACTGGATAAGAAGACCCGCAAA 59.695 45.455 0.00 0.00 0.00 3.68
1449 7490 1.906574 ACTGGATAAGAAGACCCGCAA 59.093 47.619 0.00 0.00 0.00 4.85
1450 7491 1.568504 ACTGGATAAGAAGACCCGCA 58.431 50.000 0.00 0.00 0.00 5.69
1451 7492 3.455327 GTTACTGGATAAGAAGACCCGC 58.545 50.000 0.00 0.00 0.00 6.13
1452 7493 3.705072 AGGTTACTGGATAAGAAGACCCG 59.295 47.826 0.00 0.00 0.00 5.28
1453 7494 4.715297 TCAGGTTACTGGATAAGAAGACCC 59.285 45.833 0.00 0.00 44.99 4.46
1454 7495 5.934402 TCAGGTTACTGGATAAGAAGACC 57.066 43.478 0.00 0.00 44.99 3.85
1455 7496 7.014808 AGCTATCAGGTTACTGGATAAGAAGAC 59.985 40.741 0.00 0.00 44.99 3.01
1456 7497 7.069986 AGCTATCAGGTTACTGGATAAGAAGA 58.930 38.462 0.00 0.00 44.99 2.87
1457 7498 7.232534 AGAGCTATCAGGTTACTGGATAAGAAG 59.767 40.741 0.00 0.00 44.99 2.85
1458 7499 7.069986 AGAGCTATCAGGTTACTGGATAAGAA 58.930 38.462 0.00 0.00 44.99 2.52
1459 7500 6.615617 AGAGCTATCAGGTTACTGGATAAGA 58.384 40.000 0.00 0.00 44.99 2.10
1460 7501 6.909550 AGAGCTATCAGGTTACTGGATAAG 57.090 41.667 0.00 0.00 44.99 1.73
1461 7502 8.170730 TGATAGAGCTATCAGGTTACTGGATAA 58.829 37.037 14.49 0.00 44.87 1.75
1462 7503 7.699878 TGATAGAGCTATCAGGTTACTGGATA 58.300 38.462 14.49 0.00 44.87 2.59
1520 7561 4.602696 CTATGCGCGCCTGCTTGC 62.603 66.667 30.77 0.00 39.65 4.01
1529 7571 1.258982 GATGGTTCAGAACTATGCGCG 59.741 52.381 16.38 0.00 32.29 6.86
1530 7572 2.030946 GTGATGGTTCAGAACTATGCGC 59.969 50.000 16.38 0.00 32.29 6.09
1563 7605 2.097466 GGCACATTGATTTCGGACGATT 59.903 45.455 0.00 0.00 0.00 3.34
1583 7625 4.316025 TTTCTCTGAAAATAGGGGGTGG 57.684 45.455 0.00 0.00 0.00 4.61
1621 7663 8.147058 GCTTCTGTAAGATTTCAGATCCTGATA 58.853 37.037 3.19 0.00 46.36 2.15
1719 7761 9.311916 CCACTCAAAAACATGTCTCAAAATAAA 57.688 29.630 0.00 0.00 0.00 1.40
1720 7762 8.474025 ACCACTCAAAAACATGTCTCAAAATAA 58.526 29.630 0.00 0.00 0.00 1.40
1721 7763 8.006298 ACCACTCAAAAACATGTCTCAAAATA 57.994 30.769 0.00 0.00 0.00 1.40
1722 7764 6.877236 ACCACTCAAAAACATGTCTCAAAAT 58.123 32.000 0.00 0.00 0.00 1.82
1723 7765 6.279513 ACCACTCAAAAACATGTCTCAAAA 57.720 33.333 0.00 0.00 0.00 2.44
1724 7766 5.913137 ACCACTCAAAAACATGTCTCAAA 57.087 34.783 0.00 0.00 0.00 2.69
1725 7767 5.163561 GGAACCACTCAAAAACATGTCTCAA 60.164 40.000 0.00 0.00 0.00 3.02
1726 7768 4.338118 GGAACCACTCAAAAACATGTCTCA 59.662 41.667 0.00 0.00 0.00 3.27
1727 7769 4.338118 TGGAACCACTCAAAAACATGTCTC 59.662 41.667 0.00 0.00 0.00 3.36
1728 7770 4.097892 GTGGAACCACTCAAAAACATGTCT 59.902 41.667 15.69 0.00 43.12 3.41
1729 7771 4.142271 TGTGGAACCACTCAAAAACATGTC 60.142 41.667 21.98 0.00 46.30 3.06
1730 7772 3.766591 TGTGGAACCACTCAAAAACATGT 59.233 39.130 21.98 0.00 46.30 3.21
1731 7773 4.383850 TGTGGAACCACTCAAAAACATG 57.616 40.909 21.98 0.00 46.30 3.21
1732 7774 4.202243 CCATGTGGAACCACTCAAAAACAT 60.202 41.667 21.98 4.86 46.30 2.71
1733 7775 3.131933 CCATGTGGAACCACTCAAAAACA 59.868 43.478 21.98 2.79 46.30 2.83
1734 7776 3.716601 CCATGTGGAACCACTCAAAAAC 58.283 45.455 21.98 0.00 46.30 2.43
1735 7777 2.102252 GCCATGTGGAACCACTCAAAAA 59.898 45.455 21.98 4.06 46.30 1.94
1736 7778 1.686052 GCCATGTGGAACCACTCAAAA 59.314 47.619 21.98 4.72 46.30 2.44
1737 7779 1.327303 GCCATGTGGAACCACTCAAA 58.673 50.000 21.98 5.07 46.30 2.69
1738 7780 0.184692 TGCCATGTGGAACCACTCAA 59.815 50.000 21.98 5.40 46.30 3.02
1739 7781 0.250858 CTGCCATGTGGAACCACTCA 60.251 55.000 21.98 13.92 46.30 3.41
1740 7782 0.036732 TCTGCCATGTGGAACCACTC 59.963 55.000 21.98 10.81 46.30 3.51
1741 7783 0.700564 ATCTGCCATGTGGAACCACT 59.299 50.000 21.98 7.60 46.30 4.00
1742 7784 1.098050 GATCTGCCATGTGGAACCAC 58.902 55.000 16.05 16.05 46.33 4.16
1743 7785 0.392863 CGATCTGCCATGTGGAACCA 60.393 55.000 2.55 0.00 37.39 3.67
1744 7786 1.097547 CCGATCTGCCATGTGGAACC 61.098 60.000 2.55 0.00 37.39 3.62
1745 7787 1.718757 GCCGATCTGCCATGTGGAAC 61.719 60.000 2.55 0.00 37.39 3.62
1746 7788 1.451927 GCCGATCTGCCATGTGGAA 60.452 57.895 2.55 0.00 37.39 3.53
1747 7789 2.190313 GCCGATCTGCCATGTGGA 59.810 61.111 2.55 0.00 37.39 4.02
1748 7790 3.274586 CGCCGATCTGCCATGTGG 61.275 66.667 3.31 0.00 38.53 4.17
1749 7791 3.274586 CCGCCGATCTGCCATGTG 61.275 66.667 3.31 0.00 0.00 3.21
1750 7792 3.785859 ACCGCCGATCTGCCATGT 61.786 61.111 3.31 0.00 0.00 3.21
1751 7793 3.274586 CACCGCCGATCTGCCATG 61.275 66.667 3.31 0.00 0.00 3.66
1857 7899 2.496341 CGGCGATTCCAGAGCAGA 59.504 61.111 0.00 0.00 34.01 4.26
1935 7977 1.613437 CAGTTTGGTTTCTTGCCGGAT 59.387 47.619 5.05 0.00 0.00 4.18
2001 8046 0.181114 TTGCCTGTGTGAGCTCTTGT 59.819 50.000 16.19 0.00 0.00 3.16
2016 8065 0.249911 ACTTCGGTGTCTGTCTTGCC 60.250 55.000 0.00 0.00 0.00 4.52
2026 8075 1.068055 GTCGTGTGGATACTTCGGTGT 60.068 52.381 0.00 0.00 37.61 4.16
2055 8109 2.356313 CCTCTTGTGTCGCGTGCT 60.356 61.111 5.77 0.00 0.00 4.40
2065 8119 0.695347 CTCCTCCAAAGGCCTCTTGT 59.305 55.000 5.23 0.00 43.02 3.16
2068 8122 2.664081 CGCTCCTCCAAAGGCCTCT 61.664 63.158 5.23 0.00 43.02 3.69
2074 8128 2.969628 AGTGTATCGCTCCTCCAAAG 57.030 50.000 0.00 0.00 0.00 2.77
2075 8129 3.093814 TGTAGTGTATCGCTCCTCCAAA 58.906 45.455 0.00 0.00 0.00 3.28
2088 8145 2.483491 TGCATCGTGTACGTGTAGTGTA 59.517 45.455 0.00 0.00 40.80 2.90
2093 8150 1.464521 CGTCTGCATCGTGTACGTGTA 60.465 52.381 0.00 1.86 40.80 2.90
2094 8151 0.728129 CGTCTGCATCGTGTACGTGT 60.728 55.000 0.00 0.00 40.80 4.49
2095 8152 1.403225 CCGTCTGCATCGTGTACGTG 61.403 60.000 0.00 3.91 40.80 4.49
2096 8153 1.154093 CCGTCTGCATCGTGTACGT 60.154 57.895 4.20 0.00 40.80 3.57
2097 8154 2.505498 GCCGTCTGCATCGTGTACG 61.505 63.158 9.82 0.00 40.77 3.67
2098 8155 2.505498 CGCCGTCTGCATCGTGTAC 61.505 63.158 9.82 0.00 41.33 2.90
2156 8219 3.610669 CTCGGCCGATCCCTCCTG 61.611 72.222 31.19 10.70 0.00 3.86
2444 8531 2.747989 GGGCAGGTTACAGACTAAAAGC 59.252 50.000 0.00 0.00 0.00 3.51
2448 8535 1.547372 GACGGGCAGGTTACAGACTAA 59.453 52.381 0.00 0.00 0.00 2.24
2469 8556 0.751452 TGCACCAACTACGTACCACA 59.249 50.000 0.00 0.00 0.00 4.17
2472 8559 0.039256 TCGTGCACCAACTACGTACC 60.039 55.000 12.15 0.00 38.80 3.34
2486 9182 0.439985 CACACAGCATACACTCGTGC 59.560 55.000 0.00 0.00 41.57 5.34
2513 9209 2.223803 TTTTATTCCGGCACATGGGT 57.776 45.000 0.00 0.00 0.00 4.51
2521 9217 6.503524 ACAACATGATACATTTTATTCCGGC 58.496 36.000 0.00 0.00 0.00 6.13
2550 9246 5.245531 TCAAACTAGAACATCGAAGGCAAT 58.754 37.500 0.00 0.00 0.00 3.56
2551 9247 4.637276 TCAAACTAGAACATCGAAGGCAA 58.363 39.130 0.00 0.00 0.00 4.52
2608 9304 1.423541 TGCCCTAAGAAAGAGCAACCA 59.576 47.619 0.00 0.00 0.00 3.67
2638 9334 3.379057 CGTTTACCAGTGTTTTGAGGGTT 59.621 43.478 0.00 0.00 33.14 4.11
2653 9349 0.945743 GTGTGGTCCGGACGTTTACC 60.946 60.000 27.68 14.50 0.00 2.85
2682 9378 4.321156 GGTTTACGGGTTTATGGGTGTTTC 60.321 45.833 0.00 0.00 0.00 2.78
2692 9388 5.435291 TCAACTCTTTGGTTTACGGGTTTA 58.565 37.500 0.00 0.00 33.06 2.01
2696 9392 3.497262 GTCTCAACTCTTTGGTTTACGGG 59.503 47.826 0.00 0.00 33.06 5.28
2697 9393 3.183775 CGTCTCAACTCTTTGGTTTACGG 59.816 47.826 0.00 0.00 33.06 4.02
2698 9394 3.800506 ACGTCTCAACTCTTTGGTTTACG 59.199 43.478 0.00 0.00 35.40 3.18
2699 9395 5.981915 ACTACGTCTCAACTCTTTGGTTTAC 59.018 40.000 0.00 0.00 33.06 2.01
2700 9396 6.152932 ACTACGTCTCAACTCTTTGGTTTA 57.847 37.500 0.00 0.00 33.06 2.01
2701 9397 5.019785 ACTACGTCTCAACTCTTTGGTTT 57.980 39.130 0.00 0.00 33.06 3.27
2702 9398 4.667519 ACTACGTCTCAACTCTTTGGTT 57.332 40.909 0.00 0.00 33.06 3.67
2705 9401 4.318831 GGCAAACTACGTCTCAACTCTTTG 60.319 45.833 0.00 0.00 0.00 2.77
2706 9402 3.808174 GGCAAACTACGTCTCAACTCTTT 59.192 43.478 0.00 0.00 0.00 2.52
2708 9404 2.364324 TGGCAAACTACGTCTCAACTCT 59.636 45.455 0.00 0.00 0.00 3.24
2714 9428 1.135199 TCGGATGGCAAACTACGTCTC 60.135 52.381 0.00 0.00 0.00 3.36
2718 9432 0.304705 GCATCGGATGGCAAACTACG 59.695 55.000 18.96 0.00 0.00 3.51
2781 9495 4.436317 CCTTTGATTTGCATCCAATTTGCG 60.436 41.667 0.00 0.00 43.10 4.85
2788 9502 5.486735 AAACATCCTTTGATTTGCATCCA 57.513 34.783 0.00 0.00 0.00 3.41
2790 9504 7.092716 ACTGTAAACATCCTTTGATTTGCATC 58.907 34.615 0.00 0.00 0.00 3.91
2801 9515 7.093945 ACAAACACAAGAACTGTAAACATCCTT 60.094 33.333 0.00 0.00 36.10 3.36
2802 9516 6.377146 ACAAACACAAGAACTGTAAACATCCT 59.623 34.615 0.00 0.00 36.10 3.24
2831 9545 3.399879 CGATTTGCGGGAAAACAGG 57.600 52.632 0.00 0.00 36.03 4.00
2893 9856 4.140519 AGCCTACATAACCTACCTACCCAT 60.141 45.833 0.00 0.00 0.00 4.00
2894 9857 3.208234 AGCCTACATAACCTACCTACCCA 59.792 47.826 0.00 0.00 0.00 4.51
2895 9858 3.854437 AGCCTACATAACCTACCTACCC 58.146 50.000 0.00 0.00 0.00 3.69
2896 9859 5.388654 TGTAGCCTACATAACCTACCTACC 58.611 45.833 0.00 0.00 32.89 3.18
2897 9860 6.548993 AGTTGTAGCCTACATAACCTACCTAC 59.451 42.308 5.21 0.00 38.68 3.18
2898 9861 6.548622 CAGTTGTAGCCTACATAACCTACCTA 59.451 42.308 5.21 0.00 38.68 3.08
2899 9862 5.363005 CAGTTGTAGCCTACATAACCTACCT 59.637 44.000 5.21 0.00 38.68 3.08
2900 9863 5.128335 ACAGTTGTAGCCTACATAACCTACC 59.872 44.000 5.21 0.00 38.68 3.18
2901 9864 6.218108 ACAGTTGTAGCCTACATAACCTAC 57.782 41.667 5.21 0.00 38.68 3.18
2902 9865 6.438108 TGAACAGTTGTAGCCTACATAACCTA 59.562 38.462 5.21 0.00 38.68 3.08
2903 9866 5.247564 TGAACAGTTGTAGCCTACATAACCT 59.752 40.000 5.21 0.00 38.68 3.50
2904 9867 5.484715 TGAACAGTTGTAGCCTACATAACC 58.515 41.667 5.21 0.00 38.68 2.85
2905 9868 7.611213 AATGAACAGTTGTAGCCTACATAAC 57.389 36.000 5.21 1.95 38.68 1.89
2906 9869 7.880713 TGAAATGAACAGTTGTAGCCTACATAA 59.119 33.333 5.21 0.00 38.68 1.90
2907 9870 7.390823 TGAAATGAACAGTTGTAGCCTACATA 58.609 34.615 5.21 0.00 38.68 2.29
2908 9871 6.237901 TGAAATGAACAGTTGTAGCCTACAT 58.762 36.000 5.21 0.00 38.68 2.29
2909 9872 5.616270 TGAAATGAACAGTTGTAGCCTACA 58.384 37.500 0.00 0.00 36.79 2.74
2910 9873 6.554334 TTGAAATGAACAGTTGTAGCCTAC 57.446 37.500 0.00 0.00 0.00 3.18
2911 9874 7.665559 AGAATTGAAATGAACAGTTGTAGCCTA 59.334 33.333 0.00 0.00 0.00 3.93
2912 9875 6.491403 AGAATTGAAATGAACAGTTGTAGCCT 59.509 34.615 0.00 0.00 0.00 4.58
2913 9876 6.681777 AGAATTGAAATGAACAGTTGTAGCC 58.318 36.000 0.00 0.00 0.00 3.93
2956 9919 3.067461 TGAAAAACGGACACAGGAATTGG 59.933 43.478 0.00 0.00 0.00 3.16
2963 9986 2.842208 TTGCTGAAAAACGGACACAG 57.158 45.000 0.00 0.00 0.00 3.66
2971 10008 5.808403 TGTGCATTTGATTTGCTGAAAAAC 58.192 33.333 0.00 0.00 40.77 2.43
2972 10009 6.432607 TTGTGCATTTGATTTGCTGAAAAA 57.567 29.167 0.00 0.00 40.77 1.94
2973 10010 6.432607 TTTGTGCATTTGATTTGCTGAAAA 57.567 29.167 0.00 0.00 40.77 2.29
2974 10011 6.621316 ATTTGTGCATTTGATTTGCTGAAA 57.379 29.167 0.00 0.00 40.77 2.69
2975 10012 6.621316 AATTTGTGCATTTGATTTGCTGAA 57.379 29.167 0.00 0.00 40.77 3.02
2976 10013 6.369340 CCTAATTTGTGCATTTGATTTGCTGA 59.631 34.615 0.00 0.00 40.77 4.26
2977 10014 6.402766 CCCTAATTTGTGCATTTGATTTGCTG 60.403 38.462 0.00 0.00 40.77 4.41
2978 10015 5.644636 CCCTAATTTGTGCATTTGATTTGCT 59.355 36.000 0.00 0.00 40.77 3.91
2989 10026 3.571590 ACAACCTTCCCTAATTTGTGCA 58.428 40.909 0.00 0.00 0.00 4.57
3007 10044 1.134220 AGAGTTTGACTTGGCGGACAA 60.134 47.619 0.00 0.00 37.55 3.18
3008 10045 0.468226 AGAGTTTGACTTGGCGGACA 59.532 50.000 0.00 0.00 0.00 4.02
3009 10046 2.450609 TAGAGTTTGACTTGGCGGAC 57.549 50.000 0.00 0.00 0.00 4.79
3010 10047 3.478857 TTTAGAGTTTGACTTGGCGGA 57.521 42.857 0.00 0.00 0.00 5.54
3011 10048 4.455877 AGATTTTAGAGTTTGACTTGGCGG 59.544 41.667 0.00 0.00 0.00 6.13
3013 10050 6.319141 ACAGATTTTAGAGTTTGACTTGGC 57.681 37.500 0.00 0.00 0.00 4.52
3039 10185 2.724349 AGAGTTTGACGTACGTGACAC 58.276 47.619 28.16 20.82 0.00 3.67
3040 10186 4.550577 TTAGAGTTTGACGTACGTGACA 57.449 40.909 28.16 15.92 0.00 3.58
3045 10191 4.149396 CAGGGTTTTAGAGTTTGACGTACG 59.851 45.833 15.01 15.01 0.00 3.67
3050 10196 5.370679 TGGTACAGGGTTTTAGAGTTTGAC 58.629 41.667 0.00 0.00 0.00 3.18
3068 10214 0.535335 TGACGGAGGAAGCATGGTAC 59.465 55.000 0.00 0.00 0.00 3.34
3070 10216 1.296715 GTGACGGAGGAAGCATGGT 59.703 57.895 0.00 0.00 0.00 3.55
3072 10218 1.293924 GATGTGACGGAGGAAGCATG 58.706 55.000 0.00 0.00 0.00 4.06
3073 10219 0.179000 GGATGTGACGGAGGAAGCAT 59.821 55.000 0.00 0.00 0.00 3.79
3074 10220 1.596934 GGATGTGACGGAGGAAGCA 59.403 57.895 0.00 0.00 0.00 3.91
3075 10221 1.519455 CGGATGTGACGGAGGAAGC 60.519 63.158 0.00 0.00 0.00 3.86
3076 10222 1.519455 GCGGATGTGACGGAGGAAG 60.519 63.158 0.00 0.00 0.00 3.46
3080 10226 2.509336 GTGGCGGATGTGACGGAG 60.509 66.667 0.00 0.00 0.00 4.63
3100 10261 8.502047 AACCTAGAAGAGGGTTTTAGAGTTTA 57.498 34.615 0.00 0.00 46.55 2.01
3142 10326 8.207545 ACATAAAAATGGTTTTAGAGTTTGGCA 58.792 29.630 0.00 0.00 41.36 4.92
3161 10345 8.654230 TTTAGCAGCAATTGTTTCACATAAAA 57.346 26.923 7.40 0.00 0.00 1.52
3164 10348 6.644592 GGTTTTAGCAGCAATTGTTTCACATA 59.355 34.615 7.40 0.00 0.00 2.29
3180 10365 4.612264 AACGTAGAAGAGGGTTTTAGCA 57.388 40.909 0.00 0.00 0.00 3.49
3198 10383 4.712873 GCGGGCGTGACGAAAACG 62.713 66.667 10.10 7.92 43.81 3.60
3216 10403 2.774687 GAGGGTTTAGAGTTTGGCGAA 58.225 47.619 0.00 0.00 0.00 4.70
3217 10404 1.337447 CGAGGGTTTAGAGTTTGGCGA 60.337 52.381 0.00 0.00 0.00 5.54
3237 10425 2.604614 GCGGAAACTGTTTCACATGGAC 60.605 50.000 28.53 12.62 41.43 4.02
3297 10565 0.664166 CCAGCATTGAACCGTGCAAC 60.664 55.000 0.00 0.00 43.63 4.17
3325 10593 3.091318 TACGGAGTAGGCTTCTCGG 57.909 57.895 21.56 21.56 45.11 4.63
3341 10609 0.447801 CAGCATTGAACCGCCTGTAC 59.552 55.000 0.00 0.00 0.00 2.90
3342 10610 0.676466 CCAGCATTGAACCGCCTGTA 60.676 55.000 0.00 0.00 0.00 2.74
3345 10613 3.064324 GCCAGCATTGAACCGCCT 61.064 61.111 0.00 0.00 0.00 5.52
3348 10616 3.814268 CCCGCCAGCATTGAACCG 61.814 66.667 0.00 0.00 0.00 4.44
3386 10664 9.938280 GGCTTCAATATATATAACACACCTGTA 57.062 33.333 0.00 0.00 0.00 2.74
3389 10667 9.284968 GTTGGCTTCAATATATATAACACACCT 57.715 33.333 0.00 0.00 32.47 4.00
3398 10676 4.943705 CGGGCAGTTGGCTTCAATATATAT 59.056 41.667 5.63 0.00 44.01 0.86
3399 10677 4.323417 CGGGCAGTTGGCTTCAATATATA 58.677 43.478 5.63 0.00 44.01 0.86
3400 10678 3.149196 CGGGCAGTTGGCTTCAATATAT 58.851 45.455 5.63 0.00 44.01 0.86
3401 10679 2.571212 CGGGCAGTTGGCTTCAATATA 58.429 47.619 5.63 0.00 44.01 0.86
3402 10680 1.392589 CGGGCAGTTGGCTTCAATAT 58.607 50.000 5.63 0.00 44.01 1.28
3432 10718 2.382519 CATAAGTAGTAGTCGCGGCAC 58.617 52.381 15.58 9.48 0.00 5.01
3443 10729 3.491619 CGTCAGAGCCATGCATAAGTAGT 60.492 47.826 0.00 0.00 0.00 2.73
3444 10730 3.055591 CGTCAGAGCCATGCATAAGTAG 58.944 50.000 0.00 0.00 0.00 2.57
3445 10731 2.224042 CCGTCAGAGCCATGCATAAGTA 60.224 50.000 0.00 0.00 0.00 2.24
3466 10752 8.263640 AGAGGAAAGGATATGTGATATGTATGC 58.736 37.037 0.00 0.00 0.00 3.14
3468 10754 9.781425 AGAGAGGAAAGGATATGTGATATGTAT 57.219 33.333 0.00 0.00 0.00 2.29
3500 10786 1.535226 CGAATATGAACGGAGCGGTGA 60.535 52.381 0.00 0.00 0.00 4.02
3509 10795 6.856426 TCAATAGTAGTGAGCGAATATGAACG 59.144 38.462 0.00 0.00 0.00 3.95
3527 10813 9.088512 CGTGTAAAAGATAAGAAGCTCAATAGT 57.911 33.333 0.00 0.00 0.00 2.12
3532 10818 5.571741 CGTCGTGTAAAAGATAAGAAGCTCA 59.428 40.000 0.00 0.00 0.00 4.26
3535 10821 6.252869 TCATCGTCGTGTAAAAGATAAGAAGC 59.747 38.462 0.00 0.00 0.00 3.86
3601 10887 2.463620 CGACGGTGGCACCATGATG 61.464 63.158 34.11 20.52 38.47 3.07
3605 10891 4.735132 CGACGACGGTGGCACCAT 62.735 66.667 34.11 22.75 38.47 3.55
3630 10916 2.122768 GGACTTGGAGGATGATGACCT 58.877 52.381 0.00 0.00 40.80 3.85
3712 10998 2.511600 GCGTGTTGCGGCTCCTAT 60.512 61.111 0.00 0.00 41.69 2.57
3724 11010 4.664677 GTGAGGAGGCGTGCGTGT 62.665 66.667 0.00 0.00 0.00 4.49
3728 11014 2.125753 CTCTGTGAGGAGGCGTGC 60.126 66.667 0.00 0.00 0.00 5.34
3740 11026 4.681978 GGTTGTCGCGGCCTCTGT 62.682 66.667 8.89 0.00 0.00 3.41
3758 11044 1.067071 GTGCGCCTAGTACTCCTTGTT 60.067 52.381 4.18 0.00 32.41 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.