Multiple sequence alignment - TraesCS2D01G448500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G448500 chr2D 100.000 4914 0 0 1 4914 558235916 558240829 0.000000e+00 9075.0
1 TraesCS2D01G448500 chr2D 78.610 187 29 7 9 189 8688827 8689008 4.020000e-21 113.0
2 TraesCS2D01G448500 chr2D 100.000 29 0 0 12 40 12975735 12975763 2.000000e-03 54.7
3 TraesCS2D01G448500 chr2A 93.641 4183 155 37 773 4914 698823531 698827643 0.000000e+00 6148.0
4 TraesCS2D01G448500 chr2A 100.000 30 0 0 12 41 450882562 450882591 6.870000e-04 56.5
5 TraesCS2D01G448500 chr2A 100.000 29 0 0 14 42 293935155 293935183 2.000000e-03 54.7
6 TraesCS2D01G448500 chr2B 91.384 1973 110 22 2967 4914 666651968 666653905 0.000000e+00 2647.0
7 TraesCS2D01G448500 chr2B 89.393 1103 74 16 776 1856 666649860 666650941 0.000000e+00 1349.0
8 TraesCS2D01G448500 chr2B 95.490 510 20 2 2041 2549 666650956 666651463 0.000000e+00 811.0
9 TraesCS2D01G448500 chr2B 91.160 362 28 3 2595 2953 666651624 666651984 5.720000e-134 488.0
10 TraesCS2D01G448500 chr2B 81.818 528 69 16 183 693 666649341 666649858 7.610000e-113 418.0
11 TraesCS2D01G448500 chr3A 77.855 429 83 10 183 607 175812164 175812584 6.310000e-64 255.0
12 TraesCS2D01G448500 chr5D 73.864 176 37 9 4 174 396907595 396907766 1.480000e-05 62.1
13 TraesCS2D01G448500 chr6A 100.000 31 0 0 10 40 61667423 61667393 1.910000e-04 58.4
14 TraesCS2D01G448500 chr3B 100.000 31 0 0 10 40 248669961 248669991 1.910000e-04 58.4
15 TraesCS2D01G448500 chr4A 96.970 33 0 1 12 44 632865208 632865239 2.000000e-03 54.7
16 TraesCS2D01G448500 chr3D 100.000 29 0 0 12 40 433315910 433315938 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G448500 chr2D 558235916 558240829 4913 False 9075.0 9075 100.000 1 4914 1 chr2D.!!$F3 4913
1 TraesCS2D01G448500 chr2A 698823531 698827643 4112 False 6148.0 6148 93.641 773 4914 1 chr2A.!!$F3 4141
2 TraesCS2D01G448500 chr2B 666649341 666653905 4564 False 1142.6 2647 89.849 183 4914 5 chr2B.!!$F1 4731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 784 0.031616 ACAAGTTTTCCCAAGGCCCA 60.032 50.0 0.0 0.0 0.0 5.36 F
1410 1455 0.031178 GCTTGTTCTTGCCTGGTGTG 59.969 55.0 0.0 0.0 0.0 3.82 F
2389 2439 0.955919 GGGGAGCAGTCTTTGGAACG 60.956 60.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1789 1.146637 GAAGCTGCCTATGCTCGATG 58.853 55.0 0.0 0.0 40.22 3.84 R
3069 3239 0.460284 GGCCAGTCATACACCTGTCG 60.460 60.0 0.0 0.0 0.00 4.35 R
3926 4112 0.682209 CTGCCAAAGCTGCTACCCAT 60.682 55.0 0.9 0.0 40.80 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.581024 GAGCATCTCTAGCAGATCCTG 57.419 52.381 2.22 0.00 40.20 3.86
35 36 2.892852 GAGCATCTCTAGCAGATCCTGT 59.107 50.000 2.22 0.00 40.20 4.00
36 37 4.078537 GAGCATCTCTAGCAGATCCTGTA 58.921 47.826 2.22 0.00 40.20 2.74
37 38 4.478203 AGCATCTCTAGCAGATCCTGTAA 58.522 43.478 0.00 0.00 40.20 2.41
38 39 4.898265 AGCATCTCTAGCAGATCCTGTAAA 59.102 41.667 0.00 0.00 40.20 2.01
39 40 5.365025 AGCATCTCTAGCAGATCCTGTAAAA 59.635 40.000 0.00 0.00 40.20 1.52
40 41 5.695816 GCATCTCTAGCAGATCCTGTAAAAG 59.304 44.000 0.00 0.00 40.20 2.27
41 42 5.269505 TCTCTAGCAGATCCTGTAAAAGC 57.730 43.478 0.00 0.00 33.43 3.51
42 43 4.959210 TCTCTAGCAGATCCTGTAAAAGCT 59.041 41.667 0.00 0.00 33.43 3.74
43 44 5.068460 TCTCTAGCAGATCCTGTAAAAGCTC 59.932 44.000 0.00 0.00 33.43 4.09
44 45 2.898705 AGCAGATCCTGTAAAAGCTCG 58.101 47.619 0.00 0.00 33.43 5.03
45 46 1.328986 GCAGATCCTGTAAAAGCTCGC 59.671 52.381 0.00 0.00 33.43 5.03
46 47 1.590238 CAGATCCTGTAAAAGCTCGCG 59.410 52.381 0.00 0.00 0.00 5.87
47 48 0.931005 GATCCTGTAAAAGCTCGCGG 59.069 55.000 6.13 0.00 0.00 6.46
48 49 0.462047 ATCCTGTAAAAGCTCGCGGG 60.462 55.000 6.13 2.60 0.00 6.13
49 50 2.106683 CCTGTAAAAGCTCGCGGGG 61.107 63.158 8.71 1.20 0.00 5.73
50 51 2.744709 TGTAAAAGCTCGCGGGGC 60.745 61.111 8.71 12.71 0.00 5.80
51 52 3.506096 GTAAAAGCTCGCGGGGCC 61.506 66.667 8.71 0.00 0.00 5.80
60 61 4.693525 CGCGGGGCCGTGTTTTTC 62.694 66.667 0.00 0.00 43.86 2.29
61 62 3.292159 GCGGGGCCGTGTTTTTCT 61.292 61.111 0.00 0.00 42.09 2.52
62 63 1.967494 GCGGGGCCGTGTTTTTCTA 60.967 57.895 0.00 0.00 42.09 2.10
63 64 1.918868 GCGGGGCCGTGTTTTTCTAG 61.919 60.000 0.00 0.00 42.09 2.43
64 65 1.880894 GGGGCCGTGTTTTTCTAGC 59.119 57.895 0.00 0.00 0.00 3.42
65 66 1.500396 GGGCCGTGTTTTTCTAGCG 59.500 57.895 0.00 0.00 0.00 4.26
66 67 1.500396 GGCCGTGTTTTTCTAGCGG 59.500 57.895 0.00 0.00 44.60 5.52
67 68 0.952010 GGCCGTGTTTTTCTAGCGGA 60.952 55.000 6.86 0.00 44.57 5.54
68 69 1.084289 GCCGTGTTTTTCTAGCGGAT 58.916 50.000 6.86 0.00 44.57 4.18
69 70 1.467342 GCCGTGTTTTTCTAGCGGATT 59.533 47.619 6.86 0.00 44.57 3.01
70 71 2.095415 GCCGTGTTTTTCTAGCGGATTT 60.095 45.455 6.86 0.00 44.57 2.17
71 72 3.125658 GCCGTGTTTTTCTAGCGGATTTA 59.874 43.478 6.86 0.00 44.57 1.40
72 73 4.644954 CCGTGTTTTTCTAGCGGATTTAC 58.355 43.478 0.00 0.00 44.57 2.01
73 74 4.152759 CCGTGTTTTTCTAGCGGATTTACA 59.847 41.667 0.00 0.00 44.57 2.41
74 75 5.313623 CGTGTTTTTCTAGCGGATTTACAG 58.686 41.667 0.00 0.00 0.00 2.74
75 76 5.107220 CGTGTTTTTCTAGCGGATTTACAGT 60.107 40.000 0.00 0.00 0.00 3.55
76 77 6.089820 CGTGTTTTTCTAGCGGATTTACAGTA 59.910 38.462 0.00 0.00 0.00 2.74
77 78 7.232300 GTGTTTTTCTAGCGGATTTACAGTAC 58.768 38.462 0.00 0.00 0.00 2.73
78 79 6.930164 TGTTTTTCTAGCGGATTTACAGTACA 59.070 34.615 0.00 0.00 0.00 2.90
79 80 6.956299 TTTTCTAGCGGATTTACAGTACAC 57.044 37.500 0.00 0.00 0.00 2.90
80 81 4.282950 TCTAGCGGATTTACAGTACACG 57.717 45.455 0.00 0.00 0.00 4.49
81 82 1.636988 AGCGGATTTACAGTACACGC 58.363 50.000 0.00 0.00 45.15 5.34
82 83 1.067425 AGCGGATTTACAGTACACGCA 60.067 47.619 15.49 0.00 46.96 5.24
83 84 1.727880 GCGGATTTACAGTACACGCAA 59.272 47.619 0.00 0.00 44.32 4.85
84 85 2.158058 GCGGATTTACAGTACACGCAAA 59.842 45.455 0.00 0.00 44.32 3.68
85 86 3.364167 GCGGATTTACAGTACACGCAAAA 60.364 43.478 0.00 0.00 44.32 2.44
86 87 4.670735 GCGGATTTACAGTACACGCAAAAT 60.671 41.667 0.00 0.00 44.32 1.82
87 88 5.446206 GCGGATTTACAGTACACGCAAAATA 60.446 40.000 0.00 0.00 44.32 1.40
88 89 5.955496 CGGATTTACAGTACACGCAAAATAC 59.045 40.000 0.00 0.00 0.00 1.89
89 90 6.253013 GGATTTACAGTACACGCAAAATACC 58.747 40.000 0.00 0.00 0.00 2.73
90 91 5.610235 TTTACAGTACACGCAAAATACCC 57.390 39.130 0.00 0.00 0.00 3.69
91 92 2.070783 ACAGTACACGCAAAATACCCG 58.929 47.619 0.00 0.00 0.00 5.28
92 93 1.395608 CAGTACACGCAAAATACCCGG 59.604 52.381 0.00 0.00 0.00 5.73
93 94 0.097499 GTACACGCAAAATACCCGGC 59.903 55.000 0.00 0.00 0.00 6.13
94 95 1.025647 TACACGCAAAATACCCGGCC 61.026 55.000 0.00 0.00 0.00 6.13
95 96 2.752640 ACGCAAAATACCCGGCCC 60.753 61.111 0.00 0.00 0.00 5.80
96 97 2.752238 CGCAAAATACCCGGCCCA 60.752 61.111 0.00 0.00 0.00 5.36
97 98 2.770589 CGCAAAATACCCGGCCCAG 61.771 63.158 0.00 0.00 0.00 4.45
98 99 1.379309 GCAAAATACCCGGCCCAGA 60.379 57.895 0.00 0.00 0.00 3.86
99 100 1.663379 GCAAAATACCCGGCCCAGAC 61.663 60.000 0.00 0.00 0.00 3.51
100 101 0.322997 CAAAATACCCGGCCCAGACA 60.323 55.000 0.00 0.00 0.00 3.41
101 102 0.034477 AAAATACCCGGCCCAGACAG 60.034 55.000 0.00 0.00 0.00 3.51
102 103 1.921869 AAATACCCGGCCCAGACAGG 61.922 60.000 0.00 0.00 37.03 4.00
103 104 3.635869 ATACCCGGCCCAGACAGGT 62.636 63.158 0.00 0.00 34.66 4.00
107 108 4.087892 CGGCCCAGACAGGTCCTG 62.088 72.222 17.88 17.88 37.52 3.86
109 110 1.612442 GGCCCAGACAGGTCCTGTA 60.612 63.158 24.80 0.00 45.44 2.74
110 111 1.198759 GGCCCAGACAGGTCCTGTAA 61.199 60.000 24.80 0.00 45.44 2.41
111 112 0.690762 GCCCAGACAGGTCCTGTAAA 59.309 55.000 24.80 0.00 45.44 2.01
112 113 1.073284 GCCCAGACAGGTCCTGTAAAA 59.927 52.381 24.80 0.00 45.44 1.52
113 114 2.876079 GCCCAGACAGGTCCTGTAAAAG 60.876 54.545 24.80 14.55 45.44 2.27
114 115 2.427506 CCAGACAGGTCCTGTAAAAGC 58.572 52.381 24.80 11.75 45.44 3.51
115 116 2.069273 CAGACAGGTCCTGTAAAAGCG 58.931 52.381 24.80 6.03 45.44 4.68
116 117 1.002087 AGACAGGTCCTGTAAAAGCGG 59.998 52.381 24.80 0.00 45.44 5.52
117 118 0.605589 ACAGGTCCTGTAAAAGCGGC 60.606 55.000 23.57 0.00 43.46 6.53
118 119 1.375523 AGGTCCTGTAAAAGCGGCG 60.376 57.895 0.51 0.51 0.00 6.46
119 120 1.670083 GGTCCTGTAAAAGCGGCGT 60.670 57.895 9.37 0.00 0.00 5.68
120 121 1.495951 GTCCTGTAAAAGCGGCGTG 59.504 57.895 9.37 0.00 0.00 5.34
121 122 0.947180 GTCCTGTAAAAGCGGCGTGA 60.947 55.000 9.37 0.00 0.00 4.35
122 123 0.947180 TCCTGTAAAAGCGGCGTGAC 60.947 55.000 9.37 0.21 0.00 3.67
123 124 1.225376 CCTGTAAAAGCGGCGTGACA 61.225 55.000 9.37 5.11 0.00 3.58
124 125 0.110823 CTGTAAAAGCGGCGTGACAC 60.111 55.000 9.37 0.00 0.00 3.67
125 126 1.154727 GTAAAAGCGGCGTGACACG 60.155 57.895 23.43 23.43 45.88 4.49
126 127 1.592131 TAAAAGCGGCGTGACACGT 60.592 52.632 27.32 9.77 44.73 4.49
127 128 0.318529 TAAAAGCGGCGTGACACGTA 60.319 50.000 27.32 8.78 44.73 3.57
128 129 1.152989 AAAAGCGGCGTGACACGTAA 61.153 50.000 27.32 0.00 44.73 3.18
129 130 1.152989 AAAGCGGCGTGACACGTAAA 61.153 50.000 27.32 0.00 44.73 2.01
130 131 0.947180 AAGCGGCGTGACACGTAAAT 60.947 50.000 27.32 10.43 44.73 1.40
131 132 0.947180 AGCGGCGTGACACGTAAATT 60.947 50.000 27.32 8.75 44.73 1.82
132 133 0.110554 GCGGCGTGACACGTAAATTT 60.111 50.000 27.32 0.00 44.73 1.82
133 134 1.660896 GCGGCGTGACACGTAAATTTT 60.661 47.619 27.32 0.00 44.73 1.82
134 135 2.641912 CGGCGTGACACGTAAATTTTT 58.358 42.857 27.32 0.00 44.73 1.94
150 151 2.793288 TTTTTACGGGAGGCCCTTAG 57.207 50.000 0.00 0.00 42.67 2.18
151 152 1.955451 TTTTACGGGAGGCCCTTAGA 58.045 50.000 0.00 0.00 42.67 2.10
152 153 1.197812 TTTACGGGAGGCCCTTAGAC 58.802 55.000 0.00 0.00 42.67 2.59
153 154 0.688749 TTACGGGAGGCCCTTAGACC 60.689 60.000 0.00 0.00 42.67 3.85
154 155 2.916527 TACGGGAGGCCCTTAGACCG 62.917 65.000 13.32 13.32 42.67 4.79
155 156 3.862991 GGGAGGCCCTTAGACCGC 61.863 72.222 0.00 0.00 41.34 5.68
156 157 3.862991 GGAGGCCCTTAGACCGCC 61.863 72.222 0.00 0.00 43.35 6.13
157 158 3.862991 GAGGCCCTTAGACCGCCC 61.863 72.222 0.00 0.00 44.13 6.13
161 162 3.078836 CCCTTAGACCGCCCCGAA 61.079 66.667 0.00 0.00 0.00 4.30
162 163 2.440817 CCCTTAGACCGCCCCGAAT 61.441 63.158 0.00 0.00 0.00 3.34
163 164 1.069258 CCTTAGACCGCCCCGAATC 59.931 63.158 0.00 0.00 0.00 2.52
164 165 1.069258 CTTAGACCGCCCCGAATCC 59.931 63.158 0.00 0.00 0.00 3.01
165 166 2.694829 CTTAGACCGCCCCGAATCCG 62.695 65.000 0.00 0.00 0.00 4.18
170 171 2.280524 CGCCCCGAATCCGCAATA 60.281 61.111 0.00 0.00 0.00 1.90
171 172 1.671054 CGCCCCGAATCCGCAATAT 60.671 57.895 0.00 0.00 0.00 1.28
172 173 0.390603 CGCCCCGAATCCGCAATATA 60.391 55.000 0.00 0.00 0.00 0.86
173 174 1.742411 CGCCCCGAATCCGCAATATAT 60.742 52.381 0.00 0.00 0.00 0.86
174 175 2.482316 CGCCCCGAATCCGCAATATATA 60.482 50.000 0.00 0.00 0.00 0.86
175 176 2.870411 GCCCCGAATCCGCAATATATAC 59.130 50.000 0.00 0.00 0.00 1.47
176 177 3.463944 CCCCGAATCCGCAATATATACC 58.536 50.000 0.00 0.00 0.00 2.73
177 178 3.120792 CCCGAATCCGCAATATATACCG 58.879 50.000 0.00 0.00 0.00 4.02
178 179 3.120792 CCGAATCCGCAATATATACCGG 58.879 50.000 14.59 14.59 41.97 5.28
181 182 2.953466 TCCGCAATATATACCGGAGC 57.047 50.000 9.46 0.00 44.13 4.70
186 187 2.810650 CAATATATACCGGAGCGAGGC 58.189 52.381 9.46 0.00 0.00 4.70
231 233 3.474570 GAGGAGTGGCGCAGGGAT 61.475 66.667 10.83 0.00 0.00 3.85
232 234 3.453070 GAGGAGTGGCGCAGGGATC 62.453 68.421 10.83 0.00 0.00 3.36
234 236 2.512515 GAGTGGCGCAGGGATCAC 60.513 66.667 10.83 6.95 0.00 3.06
240 242 3.190849 CGCAGGGATCACGCACAG 61.191 66.667 11.38 0.00 0.00 3.66
242 244 1.153289 GCAGGGATCACGCACAGAT 60.153 57.895 6.87 0.00 0.00 2.90
243 245 1.434622 GCAGGGATCACGCACAGATG 61.435 60.000 6.87 0.00 0.00 2.90
267 269 3.237741 GCCCTCCTCCATAGCGCT 61.238 66.667 17.26 17.26 0.00 5.92
268 270 2.812619 GCCCTCCTCCATAGCGCTT 61.813 63.158 18.68 0.00 0.00 4.68
270 272 1.690219 CCCTCCTCCATAGCGCTTGT 61.690 60.000 18.68 1.11 0.00 3.16
271 273 0.179000 CCTCCTCCATAGCGCTTGTT 59.821 55.000 18.68 0.00 0.00 2.83
282 284 3.294493 GCTTGTTGCCGGGCTTGA 61.294 61.111 21.46 3.27 35.15 3.02
288 290 1.907807 TTGCCGGGCTTGAAGCAAT 60.908 52.632 21.46 0.00 44.75 3.56
292 294 1.877680 GCCGGGCTTGAAGCAATTTTT 60.878 47.619 19.89 0.00 44.75 1.94
304 306 3.500343 AGCAATTTTTACAGGCTGGACT 58.500 40.909 20.34 0.00 32.76 3.85
306 308 3.614870 GCAATTTTTACAGGCTGGACTGG 60.615 47.826 20.34 1.62 42.75 4.00
309 311 2.787473 TTTACAGGCTGGACTGGATG 57.213 50.000 20.34 0.00 42.75 3.51
315 317 0.615331 GGCTGGACTGGATGTTCTCA 59.385 55.000 0.00 0.00 0.00 3.27
318 320 1.905215 CTGGACTGGATGTTCTCACCT 59.095 52.381 0.00 0.00 0.00 4.00
320 322 1.677217 GGACTGGATGTTCTCACCTGC 60.677 57.143 0.00 0.00 0.00 4.85
387 389 4.849329 GCGTTCGCCGTCGGAGAT 62.849 66.667 18.81 0.00 40.67 2.75
421 423 1.228124 TGGGTTGGAGGCGTTGAAG 60.228 57.895 0.00 0.00 0.00 3.02
433 435 1.207329 GCGTTGAAGGAGGAGTACCAT 59.793 52.381 0.00 0.00 38.94 3.55
440 442 0.468400 GGAGGAGTACCATCTCGCCT 60.468 60.000 0.00 0.00 38.94 5.52
441 443 1.404843 GAGGAGTACCATCTCGCCTT 58.595 55.000 0.00 0.00 38.94 4.35
442 444 1.757699 GAGGAGTACCATCTCGCCTTT 59.242 52.381 0.00 0.00 38.94 3.11
443 445 1.482593 AGGAGTACCATCTCGCCTTTG 59.517 52.381 0.00 0.00 38.94 2.77
457 459 1.072331 GCCTTTGTCCTCTCCAACTCA 59.928 52.381 0.00 0.00 0.00 3.41
479 481 2.848679 TGGAGCACCACCTCAGCA 60.849 61.111 0.00 0.00 41.77 4.41
483 485 0.321919 GAGCACCACCTCAGCATCAA 60.322 55.000 0.00 0.00 0.00 2.57
501 503 2.093500 TCAAGAAGGACGGTGATGATGG 60.093 50.000 0.00 0.00 0.00 3.51
502 504 0.179000 AGAAGGACGGTGATGATGGC 59.821 55.000 0.00 0.00 0.00 4.40
503 505 1.153369 AAGGACGGTGATGATGGCG 60.153 57.895 0.00 0.00 0.00 5.69
514 516 2.289010 TGATGATGGCGATGCGTAGATT 60.289 45.455 0.00 0.00 0.00 2.40
523 525 4.150098 GGCGATGCGTAGATTTAGGTTTAG 59.850 45.833 0.00 0.00 0.00 1.85
527 529 7.043192 GCGATGCGTAGATTTAGGTTTAGTTTA 60.043 37.037 0.00 0.00 0.00 2.01
528 530 8.477709 CGATGCGTAGATTTAGGTTTAGTTTAG 58.522 37.037 0.00 0.00 0.00 1.85
529 531 9.310716 GATGCGTAGATTTAGGTTTAGTTTAGT 57.689 33.333 0.00 0.00 0.00 2.24
531 533 9.492973 TGCGTAGATTTAGGTTTAGTTTAGTTT 57.507 29.630 0.00 0.00 0.00 2.66
578 580 6.208007 TCGTATGAACTCCGGTGATGTAATAT 59.792 38.462 11.17 0.00 0.00 1.28
579 581 6.308041 CGTATGAACTCCGGTGATGTAATATG 59.692 42.308 11.17 3.20 0.00 1.78
583 588 3.709653 ACTCCGGTGATGTAATATGTGGT 59.290 43.478 11.17 0.00 0.00 4.16
589 594 4.260620 GGTGATGTAATATGTGGTGCGAAC 60.261 45.833 0.00 0.00 0.00 3.95
594 599 2.113860 ATATGTGGTGCGAACTGCTT 57.886 45.000 0.00 0.00 46.63 3.91
607 612 6.362283 GTGCGAACTGCTTGTTTAAATTATGT 59.638 34.615 0.00 0.00 46.63 2.29
609 614 6.580791 GCGAACTGCTTGTTTAAATTATGTCA 59.419 34.615 0.00 0.00 39.30 3.58
631 636 7.429630 TGTCATATGTGTTTGTGTTTGTTTACG 59.570 33.333 1.90 0.00 0.00 3.18
634 639 3.180613 GTGTTTGTGTTTGTTTACGGGG 58.819 45.455 0.00 0.00 0.00 5.73
643 648 4.928020 TGTTTGTTTACGGGGTTTGTTTTC 59.072 37.500 0.00 0.00 0.00 2.29
644 649 3.797451 TGTTTACGGGGTTTGTTTTCC 57.203 42.857 0.00 0.00 0.00 3.13
645 650 2.098770 TGTTTACGGGGTTTGTTTTCCG 59.901 45.455 0.00 0.00 46.95 4.30
646 651 0.667453 TTACGGGGTTTGTTTTCCGC 59.333 50.000 0.00 0.00 45.65 5.54
650 666 0.883153 GGGGTTTGTTTTCCGCGTAT 59.117 50.000 4.92 0.00 0.00 3.06
651 667 1.270274 GGGGTTTGTTTTCCGCGTATT 59.730 47.619 4.92 0.00 0.00 1.89
684 702 4.722361 TTACCATAAAATTTGCGGGACC 57.278 40.909 8.72 0.00 0.00 4.46
695 713 4.020378 CGGGACCGCGGTTTGTTG 62.020 66.667 34.65 16.81 0.00 3.33
696 714 3.666253 GGGACCGCGGTTTGTTGG 61.666 66.667 34.65 2.00 0.00 3.77
697 715 2.592287 GGACCGCGGTTTGTTGGA 60.592 61.111 34.65 0.00 0.00 3.53
698 716 1.969589 GGACCGCGGTTTGTTGGAT 60.970 57.895 34.65 5.28 0.00 3.41
699 717 1.520600 GGACCGCGGTTTGTTGGATT 61.521 55.000 34.65 4.34 0.00 3.01
700 718 0.312729 GACCGCGGTTTGTTGGATTT 59.687 50.000 34.65 3.67 0.00 2.17
701 719 0.747852 ACCGCGGTTTGTTGGATTTT 59.252 45.000 28.70 0.00 0.00 1.82
702 720 1.137282 ACCGCGGTTTGTTGGATTTTT 59.863 42.857 28.70 0.00 0.00 1.94
757 775 4.932146 TCTAAAAGCTGCACAAGTTTTCC 58.068 39.130 1.02 0.00 38.26 3.13
758 776 2.602257 AAAGCTGCACAAGTTTTCCC 57.398 45.000 1.02 0.00 34.53 3.97
759 777 1.484038 AAGCTGCACAAGTTTTCCCA 58.516 45.000 1.02 0.00 0.00 4.37
760 778 1.484038 AGCTGCACAAGTTTTCCCAA 58.516 45.000 1.02 0.00 0.00 4.12
761 779 1.410153 AGCTGCACAAGTTTTCCCAAG 59.590 47.619 1.02 0.00 0.00 3.61
762 780 1.538849 GCTGCACAAGTTTTCCCAAGG 60.539 52.381 0.00 0.00 0.00 3.61
763 781 0.463620 TGCACAAGTTTTCCCAAGGC 59.536 50.000 0.00 0.00 0.00 4.35
764 782 0.249868 GCACAAGTTTTCCCAAGGCC 60.250 55.000 0.00 0.00 0.00 5.19
765 783 0.392706 CACAAGTTTTCCCAAGGCCC 59.607 55.000 0.00 0.00 0.00 5.80
766 784 0.031616 ACAAGTTTTCCCAAGGCCCA 60.032 50.000 0.00 0.00 0.00 5.36
767 785 1.127343 CAAGTTTTCCCAAGGCCCAA 58.873 50.000 0.00 0.00 0.00 4.12
768 786 1.699083 CAAGTTTTCCCAAGGCCCAAT 59.301 47.619 0.00 0.00 0.00 3.16
769 787 2.106338 CAAGTTTTCCCAAGGCCCAATT 59.894 45.455 0.00 0.00 0.00 2.32
770 788 3.268034 AGTTTTCCCAAGGCCCAATTA 57.732 42.857 0.00 0.00 0.00 1.40
771 789 3.173151 AGTTTTCCCAAGGCCCAATTAG 58.827 45.455 0.00 0.00 0.00 1.73
784 802 1.140852 CCAATTAGGCGGGATCACTGA 59.859 52.381 0.00 0.00 0.00 3.41
937 955 1.833860 CGAGTTCATCGCTTCCTCTC 58.166 55.000 0.00 0.00 45.98 3.20
939 957 1.754226 GAGTTCATCGCTTCCTCTCCT 59.246 52.381 0.00 0.00 0.00 3.69
940 958 1.754226 AGTTCATCGCTTCCTCTCCTC 59.246 52.381 0.00 0.00 0.00 3.71
941 959 1.754226 GTTCATCGCTTCCTCTCCTCT 59.246 52.381 0.00 0.00 0.00 3.69
943 961 0.249405 CATCGCTTCCTCTCCTCTGC 60.249 60.000 0.00 0.00 0.00 4.26
944 962 0.685785 ATCGCTTCCTCTCCTCTGCA 60.686 55.000 0.00 0.00 0.00 4.41
945 963 1.141449 CGCTTCCTCTCCTCTGCAG 59.859 63.158 7.63 7.63 0.00 4.41
946 964 1.318886 CGCTTCCTCTCCTCTGCAGA 61.319 60.000 17.19 17.19 0.00 4.26
947 965 0.461135 GCTTCCTCTCCTCTGCAGAG 59.539 60.000 32.84 32.84 41.71 3.35
955 973 2.507992 CTCTGCAGAGGCCGTTCG 60.508 66.667 32.30 8.34 40.13 3.95
956 974 3.997064 CTCTGCAGAGGCCGTTCGG 62.997 68.421 32.30 7.60 40.13 4.30
1078 1096 2.326664 GTCTCGTTTCTTCGACCCTTC 58.673 52.381 0.00 0.00 35.91 3.46
1083 1101 2.547218 CGTTTCTTCGACCCTTCCTTCA 60.547 50.000 0.00 0.00 0.00 3.02
1150 1168 0.594110 CGTGTTAATTTGGCCACCGT 59.406 50.000 3.88 0.00 0.00 4.83
1175 1193 9.101655 GTAACTTCTCTAGAGTTAGTAGACCAG 57.898 40.741 22.04 8.27 0.00 4.00
1193 1211 3.274288 CCAGAGAGATTTGCACCTTACC 58.726 50.000 0.00 0.00 0.00 2.85
1248 1266 5.935206 TGTTAGTTTTGGATCTGTATTGCGA 59.065 36.000 0.00 0.00 0.00 5.10
1283 1301 2.583593 CCGCCGCTTCTGCTACTC 60.584 66.667 0.00 0.00 36.97 2.59
1389 1434 8.725405 TGCTCGTATTTTATGAACTTATGGAA 57.275 30.769 0.00 0.00 0.00 3.53
1390 1435 9.168451 TGCTCGTATTTTATGAACTTATGGAAA 57.832 29.630 0.00 0.00 0.00 3.13
1410 1455 0.031178 GCTTGTTCTTGCCTGGTGTG 59.969 55.000 0.00 0.00 0.00 3.82
1423 1468 2.146342 CTGGTGTGTAAGTGGAGCTTG 58.854 52.381 0.00 0.00 38.05 4.01
1438 1484 5.807011 GTGGAGCTTGGCATTTTAGTATTTG 59.193 40.000 0.00 0.00 0.00 2.32
1630 1677 5.743117 TCCCAAAATGCAAATCTTTATGGG 58.257 37.500 16.58 16.58 45.07 4.00
1636 1683 7.910441 AAATGCAAATCTTTATGGGAAGTTG 57.090 32.000 0.00 0.00 0.00 3.16
1682 1729 7.591426 GGTCTTGCTTACAATTTGTTACTTGAG 59.409 37.037 7.45 0.72 34.61 3.02
1741 1789 4.112634 GGAGCACCAAAAGTTTTGAAGTC 58.887 43.478 26.36 16.72 35.97 3.01
1768 1816 1.127343 ATAGGCAGCTTCTCCCAGTC 58.873 55.000 0.00 0.00 0.00 3.51
1774 1822 2.169352 GCAGCTTCTCCCAGTCTTCATA 59.831 50.000 0.00 0.00 0.00 2.15
1776 1824 4.378774 CAGCTTCTCCCAGTCTTCATATG 58.621 47.826 0.00 0.00 0.00 1.78
1828 1876 4.098914 AGCCTGGTTCATTTAGTGTTCA 57.901 40.909 0.00 0.00 0.00 3.18
1930 1978 1.136147 GCACGCTGAAATGGAGCTG 59.864 57.895 0.00 0.00 34.03 4.24
1936 1984 4.025396 CACGCTGAAATGGAGCTGTAATAG 60.025 45.833 0.00 0.00 34.03 1.73
2008 2057 6.016777 GCTGTAGATAGCATGCCTACATTTTT 60.017 38.462 25.72 5.79 41.04 1.94
2200 2249 5.235186 CACCGATGACATCTTCTGGTATTTC 59.765 44.000 13.45 0.00 31.39 2.17
2201 2250 5.104941 ACCGATGACATCTTCTGGTATTTCA 60.105 40.000 13.45 0.00 31.09 2.69
2260 2309 9.776158 CTTGTAATCATTAGAGTACCGCTATAG 57.224 37.037 0.00 0.00 42.92 1.31
2389 2439 0.955919 GGGGAGCAGTCTTTGGAACG 60.956 60.000 0.00 0.00 0.00 3.95
2433 2483 5.667466 TCAGGTATTATCGAACCTTTGGAC 58.333 41.667 3.70 0.00 43.77 4.02
2565 2615 7.024768 TCTACCGAAGAACAAACAAAAAGTTG 58.975 34.615 0.00 0.00 41.19 3.16
2650 2815 5.655532 AGTTACTATGTGTAGGTGGTACAGG 59.344 44.000 0.00 0.00 42.56 4.00
2882 3050 5.393962 CAGGTTGCAAGTAAGAAGTAATGC 58.606 41.667 0.00 0.00 0.00 3.56
2953 3122 5.178096 TCTTTGACATCCAATTCCTAGCA 57.822 39.130 0.00 0.00 34.23 3.49
2957 3126 4.922206 TGACATCCAATTCCTAGCACTTT 58.078 39.130 0.00 0.00 0.00 2.66
3069 3239 2.399356 GCCAGTCTAACGCTTGGCC 61.399 63.158 0.00 0.00 36.52 5.36
3127 3305 6.942576 ACAATCTGTTATCTACTTGCCTTGTT 59.057 34.615 0.00 0.00 0.00 2.83
3128 3306 7.119846 ACAATCTGTTATCTACTTGCCTTGTTC 59.880 37.037 0.00 0.00 0.00 3.18
3129 3307 6.109156 TCTGTTATCTACTTGCCTTGTTCA 57.891 37.500 0.00 0.00 0.00 3.18
3130 3308 6.711277 TCTGTTATCTACTTGCCTTGTTCAT 58.289 36.000 0.00 0.00 0.00 2.57
3131 3309 6.595326 TCTGTTATCTACTTGCCTTGTTCATG 59.405 38.462 0.00 0.00 0.00 3.07
3132 3310 6.237901 TGTTATCTACTTGCCTTGTTCATGT 58.762 36.000 0.00 0.00 0.00 3.21
3463 3641 2.356665 TAAGCCAACTGAACCTTGCA 57.643 45.000 0.00 0.00 0.00 4.08
3492 3670 4.713735 TGCCGCCCGATTGAAGCA 62.714 61.111 0.00 0.00 0.00 3.91
3639 3822 5.238650 TGCTTTGGCTTAAGTACTCTCAAAC 59.761 40.000 4.02 0.82 39.59 2.93
3815 4001 5.054390 TGGAAACTTATCGCATTTTCACC 57.946 39.130 0.00 0.00 30.88 4.02
3926 4112 4.093850 GTGCAGCATAATGATCATATCGCA 59.906 41.667 19.46 14.63 0.00 5.10
3942 4128 1.811860 GCATGGGTAGCAGCTTTGG 59.188 57.895 0.00 0.00 0.00 3.28
4016 4203 6.619801 AAGTGTAGTCAACAATGAACCTTC 57.380 37.500 0.00 0.00 40.63 3.46
4220 4408 8.722342 TGAAAATTGTGTAATTTAGAACTCGC 57.278 30.769 0.00 0.00 43.74 5.03
4293 4481 3.620488 ACCACTAATAGGCAATGGTGTG 58.380 45.455 0.20 0.00 42.12 3.82
4294 4482 3.010138 ACCACTAATAGGCAATGGTGTGT 59.990 43.478 0.20 0.00 42.12 3.72
4295 4483 3.378112 CCACTAATAGGCAATGGTGTGTG 59.622 47.826 0.00 0.00 0.00 3.82
4296 4484 4.260985 CACTAATAGGCAATGGTGTGTGA 58.739 43.478 0.00 0.00 0.00 3.58
4297 4485 4.094887 CACTAATAGGCAATGGTGTGTGAC 59.905 45.833 0.00 0.00 0.00 3.67
4319 4507 4.098807 ACTGTGTGTGGTTTAAATTGTCCC 59.901 41.667 0.00 0.00 0.00 4.46
4476 4669 9.125026 GAATCAACATATTAGAATTGGTGACCT 57.875 33.333 2.11 0.00 39.70 3.85
4477 4670 7.864108 TCAACATATTAGAATTGGTGACCTG 57.136 36.000 2.11 0.00 32.38 4.00
4496 4689 3.181462 CCTGAATAGCTGTGTGGCATAGA 60.181 47.826 0.00 0.00 34.17 1.98
4510 4703 8.407832 TGTGTGGCATAGAATTATCTGAATTTG 58.592 33.333 0.00 0.00 37.10 2.32
4529 4722 1.275291 TGCTGTCTACCAGTAACCTGC 59.725 52.381 0.00 0.00 43.55 4.85
4544 4737 1.539827 ACCTGCGTAAAATTGCCTGAC 59.460 47.619 0.00 0.00 0.00 3.51
4656 4851 3.839490 TCCGGTGAAATGGACCTAACTTA 59.161 43.478 0.00 0.00 0.00 2.24
4657 4852 3.937079 CCGGTGAAATGGACCTAACTTAC 59.063 47.826 0.00 0.00 0.00 2.34
4673 4868 8.822805 ACCTAACTTACATGAGTTGGATTCTAA 58.177 33.333 10.96 0.00 39.61 2.10
4698 4893 5.204409 TGCATATGATTTGCAATCCTTCC 57.796 39.130 8.09 0.00 46.48 3.46
4711 4906 5.051153 GCAATCCTTCCTAGTTGTAGCTAC 58.949 45.833 17.30 17.30 0.00 3.58
4723 4918 4.692625 AGTTGTAGCTACTGTTGCTTCATG 59.307 41.667 23.84 0.00 41.46 3.07
4744 4939 3.688673 TGCATGTTGTATCTGAAATGCGA 59.311 39.130 0.00 0.00 42.53 5.10
4748 4943 6.522165 GCATGTTGTATCTGAAATGCGATATG 59.478 38.462 0.00 0.00 32.04 1.78
4824 5019 6.830912 TGTCACTTCATCATAGATTAAGGGG 58.169 40.000 4.02 0.00 0.00 4.79
4894 5089 2.223803 TCCTGAGACAGAACTCCTCC 57.776 55.000 0.00 0.00 36.22 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.239998 GCTAGAGATGCTCTTACAAACAAAATT 58.760 33.333 1.88 0.00 41.50 1.82
1 2 7.391554 TGCTAGAGATGCTCTTACAAACAAAAT 59.608 33.333 1.88 0.00 41.50 1.82
2 3 6.710295 TGCTAGAGATGCTCTTACAAACAAAA 59.290 34.615 1.88 0.00 41.50 2.44
3 4 6.230472 TGCTAGAGATGCTCTTACAAACAAA 58.770 36.000 1.88 0.00 41.50 2.83
4 5 5.793817 TGCTAGAGATGCTCTTACAAACAA 58.206 37.500 1.88 0.00 41.50 2.83
5 6 5.185828 TCTGCTAGAGATGCTCTTACAAACA 59.814 40.000 1.88 0.00 41.50 2.83
6 7 5.655488 TCTGCTAGAGATGCTCTTACAAAC 58.345 41.667 1.88 0.00 41.50 2.93
7 8 5.921962 TCTGCTAGAGATGCTCTTACAAA 57.078 39.130 1.88 0.00 41.50 2.83
8 9 5.010516 GGATCTGCTAGAGATGCTCTTACAA 59.989 44.000 12.96 0.00 44.26 2.41
9 10 4.522405 GGATCTGCTAGAGATGCTCTTACA 59.478 45.833 12.96 1.38 44.26 2.41
10 11 5.059404 GGATCTGCTAGAGATGCTCTTAC 57.941 47.826 12.96 0.00 44.26 2.34
17 18 5.695816 GCTTTTACAGGATCTGCTAGAGATG 59.304 44.000 8.78 1.49 41.91 2.90
18 19 5.602145 AGCTTTTACAGGATCTGCTAGAGAT 59.398 40.000 0.00 0.00 44.78 2.75
19 20 4.959210 AGCTTTTACAGGATCTGCTAGAGA 59.041 41.667 0.00 0.00 34.37 3.10
20 21 5.275067 AGCTTTTACAGGATCTGCTAGAG 57.725 43.478 0.00 0.00 34.37 2.43
21 22 4.202060 CGAGCTTTTACAGGATCTGCTAGA 60.202 45.833 0.00 0.00 34.37 2.43
22 23 4.047822 CGAGCTTTTACAGGATCTGCTAG 58.952 47.826 0.00 0.00 34.37 3.42
23 24 3.738281 GCGAGCTTTTACAGGATCTGCTA 60.738 47.826 0.00 0.00 34.37 3.49
24 25 2.898705 CGAGCTTTTACAGGATCTGCT 58.101 47.619 0.00 0.00 34.37 4.24
25 26 1.328986 GCGAGCTTTTACAGGATCTGC 59.671 52.381 0.00 0.00 34.37 4.26
26 27 1.590238 CGCGAGCTTTTACAGGATCTG 59.410 52.381 0.00 0.00 37.52 2.90
27 28 1.471676 CCGCGAGCTTTTACAGGATCT 60.472 52.381 8.23 0.00 0.00 2.75
28 29 0.931005 CCGCGAGCTTTTACAGGATC 59.069 55.000 8.23 0.00 0.00 3.36
29 30 0.462047 CCCGCGAGCTTTTACAGGAT 60.462 55.000 8.23 0.00 0.00 3.24
30 31 1.079405 CCCGCGAGCTTTTACAGGA 60.079 57.895 8.23 0.00 0.00 3.86
31 32 2.106683 CCCCGCGAGCTTTTACAGG 61.107 63.158 8.23 0.00 0.00 4.00
32 33 2.750888 GCCCCGCGAGCTTTTACAG 61.751 63.158 8.23 0.00 0.00 2.74
33 34 2.744709 GCCCCGCGAGCTTTTACA 60.745 61.111 8.23 0.00 0.00 2.41
34 35 3.506096 GGCCCCGCGAGCTTTTAC 61.506 66.667 8.23 0.00 0.00 2.01
43 44 4.693525 GAAAAACACGGCCCCGCG 62.694 66.667 6.63 0.00 44.19 6.46
44 45 1.918868 CTAGAAAAACACGGCCCCGC 61.919 60.000 6.63 0.00 44.19 6.13
45 46 1.918868 GCTAGAAAAACACGGCCCCG 61.919 60.000 4.96 4.96 46.03 5.73
46 47 1.880894 GCTAGAAAAACACGGCCCC 59.119 57.895 0.00 0.00 0.00 5.80
47 48 1.500396 CGCTAGAAAAACACGGCCC 59.500 57.895 0.00 0.00 0.00 5.80
48 49 0.952010 TCCGCTAGAAAAACACGGCC 60.952 55.000 0.00 0.00 43.50 6.13
49 50 1.084289 ATCCGCTAGAAAAACACGGC 58.916 50.000 0.00 0.00 43.50 5.68
50 51 3.824414 AAATCCGCTAGAAAAACACGG 57.176 42.857 0.00 0.00 45.15 4.94
51 52 5.107220 ACTGTAAATCCGCTAGAAAAACACG 60.107 40.000 0.00 0.00 0.00 4.49
52 53 6.237313 ACTGTAAATCCGCTAGAAAAACAC 57.763 37.500 0.00 0.00 0.00 3.32
53 54 6.930164 TGTACTGTAAATCCGCTAGAAAAACA 59.070 34.615 0.00 0.00 0.00 2.83
54 55 7.232300 GTGTACTGTAAATCCGCTAGAAAAAC 58.768 38.462 0.00 0.00 0.00 2.43
55 56 6.089820 CGTGTACTGTAAATCCGCTAGAAAAA 59.910 38.462 0.00 0.00 0.00 1.94
56 57 5.574055 CGTGTACTGTAAATCCGCTAGAAAA 59.426 40.000 0.00 0.00 0.00 2.29
57 58 5.097529 CGTGTACTGTAAATCCGCTAGAAA 58.902 41.667 0.00 0.00 0.00 2.52
58 59 4.665212 CGTGTACTGTAAATCCGCTAGAA 58.335 43.478 0.00 0.00 0.00 2.10
59 60 3.488047 GCGTGTACTGTAAATCCGCTAGA 60.488 47.826 5.92 0.00 36.94 2.43
60 61 2.787680 GCGTGTACTGTAAATCCGCTAG 59.212 50.000 5.92 0.00 36.94 3.42
61 62 2.164017 TGCGTGTACTGTAAATCCGCTA 59.836 45.455 12.37 0.22 40.24 4.26
62 63 1.067425 TGCGTGTACTGTAAATCCGCT 60.067 47.619 12.37 0.00 40.24 5.52
63 64 1.352114 TGCGTGTACTGTAAATCCGC 58.648 50.000 6.16 6.16 40.02 5.54
64 65 4.392619 TTTTGCGTGTACTGTAAATCCG 57.607 40.909 0.00 0.00 0.00 4.18
65 66 6.253013 GGTATTTTGCGTGTACTGTAAATCC 58.747 40.000 0.00 0.34 0.00 3.01
66 67 6.253013 GGGTATTTTGCGTGTACTGTAAATC 58.747 40.000 0.00 0.00 0.00 2.17
67 68 5.163834 CGGGTATTTTGCGTGTACTGTAAAT 60.164 40.000 0.00 0.00 0.00 1.40
68 69 4.152045 CGGGTATTTTGCGTGTACTGTAAA 59.848 41.667 0.00 0.00 0.00 2.01
69 70 3.679025 CGGGTATTTTGCGTGTACTGTAA 59.321 43.478 0.00 0.00 0.00 2.41
70 71 3.252400 CGGGTATTTTGCGTGTACTGTA 58.748 45.455 0.00 0.00 0.00 2.74
71 72 2.070783 CGGGTATTTTGCGTGTACTGT 58.929 47.619 0.00 0.00 0.00 3.55
72 73 1.395608 CCGGGTATTTTGCGTGTACTG 59.604 52.381 0.00 0.00 0.00 2.74
73 74 1.729284 CCGGGTATTTTGCGTGTACT 58.271 50.000 0.00 0.00 0.00 2.73
74 75 0.097499 GCCGGGTATTTTGCGTGTAC 59.903 55.000 2.18 0.00 0.00 2.90
75 76 1.025647 GGCCGGGTATTTTGCGTGTA 61.026 55.000 2.18 0.00 0.00 2.90
76 77 2.337246 GGCCGGGTATTTTGCGTGT 61.337 57.895 2.18 0.00 0.00 4.49
77 78 2.487892 GGCCGGGTATTTTGCGTG 59.512 61.111 2.18 0.00 0.00 5.34
78 79 2.752640 GGGCCGGGTATTTTGCGT 60.753 61.111 2.18 0.00 0.00 5.24
79 80 2.752238 TGGGCCGGGTATTTTGCG 60.752 61.111 2.18 0.00 0.00 4.85
80 81 1.379309 TCTGGGCCGGGTATTTTGC 60.379 57.895 13.58 0.00 0.00 3.68
81 82 0.322997 TGTCTGGGCCGGGTATTTTG 60.323 55.000 13.58 0.00 0.00 2.44
82 83 0.034477 CTGTCTGGGCCGGGTATTTT 60.034 55.000 13.58 0.00 0.00 1.82
83 84 1.607612 CTGTCTGGGCCGGGTATTT 59.392 57.895 13.58 0.00 0.00 1.40
84 85 2.375345 CCTGTCTGGGCCGGGTATT 61.375 63.158 13.58 0.00 0.00 1.89
85 86 2.768344 CCTGTCTGGGCCGGGTAT 60.768 66.667 13.58 0.00 0.00 2.73
86 87 4.326227 ACCTGTCTGGGCCGGGTA 62.326 66.667 13.58 0.57 39.84 3.69
92 93 0.690762 TTTACAGGACCTGTCTGGGC 59.309 55.000 30.43 0.00 41.21 5.36
93 94 2.876079 GCTTTTACAGGACCTGTCTGGG 60.876 54.545 30.43 18.87 41.21 4.45
94 95 2.427506 GCTTTTACAGGACCTGTCTGG 58.572 52.381 30.43 18.54 41.21 3.86
95 96 2.069273 CGCTTTTACAGGACCTGTCTG 58.931 52.381 30.43 18.31 41.21 3.51
96 97 1.002087 CCGCTTTTACAGGACCTGTCT 59.998 52.381 30.43 10.21 41.21 3.41
97 98 1.439679 CCGCTTTTACAGGACCTGTC 58.560 55.000 30.43 14.69 41.21 3.51
99 100 1.635663 CGCCGCTTTTACAGGACCTG 61.636 60.000 20.45 20.45 37.52 4.00
100 101 1.375523 CGCCGCTTTTACAGGACCT 60.376 57.895 0.00 0.00 0.00 3.85
101 102 1.670083 ACGCCGCTTTTACAGGACC 60.670 57.895 0.00 0.00 0.00 4.46
102 103 0.947180 TCACGCCGCTTTTACAGGAC 60.947 55.000 0.00 0.00 0.00 3.85
103 104 0.947180 GTCACGCCGCTTTTACAGGA 60.947 55.000 0.00 0.00 0.00 3.86
104 105 1.225376 TGTCACGCCGCTTTTACAGG 61.225 55.000 0.00 0.00 0.00 4.00
105 106 0.110823 GTGTCACGCCGCTTTTACAG 60.111 55.000 0.00 0.00 0.00 2.74
106 107 1.823260 CGTGTCACGCCGCTTTTACA 61.823 55.000 13.22 0.00 33.65 2.41
107 108 1.154727 CGTGTCACGCCGCTTTTAC 60.155 57.895 13.22 0.00 33.65 2.01
108 109 3.236322 CGTGTCACGCCGCTTTTA 58.764 55.556 13.22 0.00 33.65 1.52
138 139 3.862991 GCGGTCTAAGGGCCTCCC 61.863 72.222 6.46 3.81 45.90 4.30
139 140 3.862991 GGCGGTCTAAGGGCCTCC 61.863 72.222 6.46 1.91 43.52 4.30
140 141 3.862991 GGGCGGTCTAAGGGCCTC 61.863 72.222 6.46 0.00 46.10 4.70
144 145 2.379030 GATTCGGGGCGGTCTAAGGG 62.379 65.000 0.00 0.00 0.00 3.95
145 146 1.069258 GATTCGGGGCGGTCTAAGG 59.931 63.158 0.00 0.00 0.00 2.69
146 147 1.069258 GGATTCGGGGCGGTCTAAG 59.931 63.158 0.00 0.00 0.00 2.18
147 148 2.788640 CGGATTCGGGGCGGTCTAA 61.789 63.158 0.00 0.00 0.00 2.10
148 149 3.221389 CGGATTCGGGGCGGTCTA 61.221 66.667 0.00 0.00 0.00 2.59
152 153 3.702284 TATATTGCGGATTCGGGGCGG 62.702 57.143 0.00 0.00 36.79 6.13
153 154 0.390603 TATATTGCGGATTCGGGGCG 60.391 55.000 0.00 0.00 36.79 6.13
154 155 2.038387 ATATATTGCGGATTCGGGGC 57.962 50.000 0.00 0.00 36.79 5.80
155 156 3.463944 GGTATATATTGCGGATTCGGGG 58.536 50.000 0.00 0.00 36.79 5.73
156 157 3.120792 CGGTATATATTGCGGATTCGGG 58.879 50.000 0.00 0.00 36.79 5.14
157 158 3.120792 CCGGTATATATTGCGGATTCGG 58.879 50.000 0.00 0.00 36.79 4.30
158 159 4.036567 TCCGGTATATATTGCGGATTCG 57.963 45.455 0.00 0.00 39.81 3.34
159 160 3.802685 GCTCCGGTATATATTGCGGATTC 59.197 47.826 0.00 0.00 0.00 2.52
160 161 3.737047 CGCTCCGGTATATATTGCGGATT 60.737 47.826 0.00 0.00 38.54 3.01
161 162 2.223735 CGCTCCGGTATATATTGCGGAT 60.224 50.000 0.00 0.00 38.54 4.18
162 163 1.133598 CGCTCCGGTATATATTGCGGA 59.866 52.381 0.00 0.00 38.54 5.54
163 164 1.133598 TCGCTCCGGTATATATTGCGG 59.866 52.381 0.00 0.00 41.82 5.69
164 165 2.451132 CTCGCTCCGGTATATATTGCG 58.549 52.381 0.00 6.45 42.70 4.85
165 166 2.810650 CCTCGCTCCGGTATATATTGC 58.189 52.381 0.00 0.00 0.00 3.56
166 167 2.481449 GGCCTCGCTCCGGTATATATTG 60.481 54.545 0.00 0.00 0.00 1.90
167 168 1.755380 GGCCTCGCTCCGGTATATATT 59.245 52.381 0.00 0.00 0.00 1.28
168 169 1.400737 GGCCTCGCTCCGGTATATAT 58.599 55.000 0.00 0.00 0.00 0.86
169 170 1.028330 CGGCCTCGCTCCGGTATATA 61.028 60.000 0.00 0.00 42.99 0.86
170 171 2.341101 CGGCCTCGCTCCGGTATAT 61.341 63.158 0.00 0.00 42.99 0.86
171 172 2.981909 CGGCCTCGCTCCGGTATA 60.982 66.667 0.00 0.00 42.99 1.47
203 205 4.640690 ACTCCTCCACTGGCGGGT 62.641 66.667 4.16 0.00 0.00 5.28
210 212 3.699894 CTGCGCCACTCCTCCACT 61.700 66.667 4.18 0.00 0.00 4.00
245 247 3.161450 TATGGAGGAGGGCGCCAC 61.161 66.667 30.85 21.10 33.93 5.01
246 248 2.844362 CTATGGAGGAGGGCGCCA 60.844 66.667 30.85 5.63 35.91 5.69
248 250 4.671569 CGCTATGGAGGAGGGCGC 62.672 72.222 0.00 0.00 39.42 6.53
265 267 2.753931 CTTCAAGCCCGGCAACAAGC 62.754 60.000 13.15 0.00 44.65 4.01
267 269 2.855514 GCTTCAAGCCCGGCAACAA 61.856 57.895 13.15 0.00 34.48 2.83
268 270 3.294493 GCTTCAAGCCCGGCAACA 61.294 61.111 13.15 0.00 34.48 3.33
270 272 1.470996 AATTGCTTCAAGCCCGGCAA 61.471 50.000 13.15 0.00 46.32 4.52
271 273 1.470996 AAATTGCTTCAAGCCCGGCA 61.471 50.000 13.15 0.00 41.51 5.69
282 284 3.897505 AGTCCAGCCTGTAAAAATTGCTT 59.102 39.130 0.00 0.00 0.00 3.91
288 290 3.181434 ACATCCAGTCCAGCCTGTAAAAA 60.181 43.478 0.00 0.00 0.00 1.94
292 294 1.555075 GAACATCCAGTCCAGCCTGTA 59.445 52.381 0.00 0.00 0.00 2.74
304 306 1.375908 GCGCAGGTGAGAACATCCA 60.376 57.895 0.30 0.00 0.00 3.41
306 308 0.390340 TGAGCGCAGGTGAGAACATC 60.390 55.000 11.47 0.00 39.88 3.06
309 311 1.905922 GCTTGAGCGCAGGTGAGAAC 61.906 60.000 11.47 0.00 39.88 3.01
340 342 3.121030 GAACCATGCGCGCTCTGT 61.121 61.111 33.29 21.99 0.00 3.41
342 344 4.435436 TCGAACCATGCGCGCTCT 62.435 61.111 33.29 17.06 0.00 4.09
351 353 1.153823 CTCCTTCGCGTCGAACCAT 60.154 57.895 5.77 0.00 41.05 3.55
373 375 1.138883 CTTCATCTCCGACGGCGAA 59.861 57.895 15.16 8.83 40.82 4.70
374 376 2.798689 CTTCATCTCCGACGGCGA 59.201 61.111 15.16 9.35 40.82 5.54
379 381 1.427592 GCTGCAGCTTCATCTCCGAC 61.428 60.000 31.33 0.00 38.21 4.79
380 382 1.153489 GCTGCAGCTTCATCTCCGA 60.153 57.895 31.33 0.00 38.21 4.55
382 384 2.178890 CCGCTGCAGCTTCATCTCC 61.179 63.158 34.22 4.61 39.32 3.71
403 405 1.228124 CTTCAACGCCTCCAACCCA 60.228 57.895 0.00 0.00 0.00 4.51
407 409 1.125093 TCCTCCTTCAACGCCTCCAA 61.125 55.000 0.00 0.00 0.00 3.53
413 415 0.606604 TGGTACTCCTCCTTCAACGC 59.393 55.000 0.00 0.00 34.23 4.84
421 423 0.468400 AGGCGAGATGGTACTCCTCC 60.468 60.000 0.00 0.00 33.83 4.30
433 435 0.541998 TGGAGAGGACAAAGGCGAGA 60.542 55.000 0.00 0.00 0.00 4.04
440 442 5.513094 CCATTAGTGAGTTGGAGAGGACAAA 60.513 44.000 0.00 0.00 31.94 2.83
441 443 4.020218 CCATTAGTGAGTTGGAGAGGACAA 60.020 45.833 0.00 0.00 31.94 3.18
442 444 3.515502 CCATTAGTGAGTTGGAGAGGACA 59.484 47.826 0.00 0.00 31.94 4.02
443 445 3.769844 TCCATTAGTGAGTTGGAGAGGAC 59.230 47.826 0.00 0.00 34.65 3.85
457 459 1.556911 CTGAGGTGGTGCTCCATTAGT 59.443 52.381 11.31 0.00 46.20 2.24
476 478 0.976641 TCACCGTCCTTCTTGATGCT 59.023 50.000 0.00 0.00 0.00 3.79
479 481 3.432749 CCATCATCACCGTCCTTCTTGAT 60.433 47.826 0.00 0.00 0.00 2.57
483 485 0.179000 GCCATCATCACCGTCCTTCT 59.821 55.000 0.00 0.00 0.00 2.85
501 503 4.743644 ACTAAACCTAAATCTACGCATCGC 59.256 41.667 0.00 0.00 0.00 4.58
502 504 6.823678 AACTAAACCTAAATCTACGCATCG 57.176 37.500 0.00 0.00 0.00 3.84
503 505 9.310716 ACTAAACTAAACCTAAATCTACGCATC 57.689 33.333 0.00 0.00 0.00 3.91
527 529 8.732746 AAACAGAGTTCACACTAACATAAACT 57.267 30.769 0.00 0.00 31.22 2.66
528 530 9.434559 GAAAACAGAGTTCACACTAACATAAAC 57.565 33.333 0.00 0.00 31.22 2.01
529 531 8.332464 CGAAAACAGAGTTCACACTAACATAAA 58.668 33.333 0.00 0.00 31.22 1.40
531 533 6.982141 ACGAAAACAGAGTTCACACTAACATA 59.018 34.615 0.00 0.00 31.22 2.29
532 534 5.815740 ACGAAAACAGAGTTCACACTAACAT 59.184 36.000 0.00 0.00 31.22 2.71
533 535 5.172934 ACGAAAACAGAGTTCACACTAACA 58.827 37.500 0.00 0.00 31.22 2.41
534 536 5.713822 ACGAAAACAGAGTTCACACTAAC 57.286 39.130 0.00 0.00 31.22 2.34
535 537 7.204604 TCATACGAAAACAGAGTTCACACTAA 58.795 34.615 0.00 0.00 31.22 2.24
578 580 1.029408 AACAAGCAGTTCGCACCACA 61.029 50.000 0.00 0.00 46.13 4.17
579 581 0.100503 AAACAAGCAGTTCGCACCAC 59.899 50.000 0.00 0.00 46.13 4.16
583 588 6.442952 ACATAATTTAAACAAGCAGTTCGCA 58.557 32.000 0.00 0.00 46.13 5.10
607 612 6.913132 CCGTAAACAAACACAAACACATATGA 59.087 34.615 10.38 0.00 0.00 2.15
609 614 6.210078 CCCGTAAACAAACACAAACACATAT 58.790 36.000 0.00 0.00 0.00 1.78
631 636 0.883153 ATACGCGGAAAACAAACCCC 59.117 50.000 12.47 0.00 0.00 4.95
634 639 6.678540 ATTTACAATACGCGGAAAACAAAC 57.321 33.333 12.47 0.00 0.00 2.93
666 682 2.202295 CGGTCCCGCAAATTTTATGG 57.798 50.000 0.00 0.00 0.00 2.74
679 697 3.666253 CCAACAAACCGCGGTCCC 61.666 66.667 34.29 0.00 0.00 4.46
734 752 4.978580 GGAAAACTTGTGCAGCTTTTAGAG 59.021 41.667 0.00 0.00 0.00 2.43
735 753 4.202111 GGGAAAACTTGTGCAGCTTTTAGA 60.202 41.667 0.00 0.00 0.00 2.10
736 754 4.051237 GGGAAAACTTGTGCAGCTTTTAG 58.949 43.478 0.00 0.00 0.00 1.85
737 755 3.449018 TGGGAAAACTTGTGCAGCTTTTA 59.551 39.130 0.00 0.00 0.00 1.52
738 756 2.235898 TGGGAAAACTTGTGCAGCTTTT 59.764 40.909 0.00 0.00 0.00 2.27
739 757 1.830477 TGGGAAAACTTGTGCAGCTTT 59.170 42.857 0.00 0.00 0.00 3.51
740 758 1.484038 TGGGAAAACTTGTGCAGCTT 58.516 45.000 0.00 0.00 0.00 3.74
741 759 1.410153 CTTGGGAAAACTTGTGCAGCT 59.590 47.619 0.00 0.00 0.00 4.24
742 760 1.538849 CCTTGGGAAAACTTGTGCAGC 60.539 52.381 0.00 0.00 0.00 5.25
743 761 1.538849 GCCTTGGGAAAACTTGTGCAG 60.539 52.381 0.00 0.00 0.00 4.41
744 762 0.463620 GCCTTGGGAAAACTTGTGCA 59.536 50.000 0.00 0.00 0.00 4.57
745 763 0.249868 GGCCTTGGGAAAACTTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
746 764 0.392706 GGGCCTTGGGAAAACTTGTG 59.607 55.000 0.84 0.00 0.00 3.33
747 765 0.031616 TGGGCCTTGGGAAAACTTGT 60.032 50.000 4.53 0.00 0.00 3.16
748 766 1.127343 TTGGGCCTTGGGAAAACTTG 58.873 50.000 4.53 0.00 0.00 3.16
749 767 2.116869 ATTGGGCCTTGGGAAAACTT 57.883 45.000 4.53 0.00 0.00 2.66
750 768 2.116869 AATTGGGCCTTGGGAAAACT 57.883 45.000 4.53 0.00 0.00 2.66
751 769 2.236146 CCTAATTGGGCCTTGGGAAAAC 59.764 50.000 4.53 0.00 0.00 2.43
752 770 2.545810 CCTAATTGGGCCTTGGGAAAA 58.454 47.619 4.53 0.00 0.00 2.29
753 771 1.899438 GCCTAATTGGGCCTTGGGAAA 60.899 52.381 21.60 0.00 45.92 3.13
754 772 0.325203 GCCTAATTGGGCCTTGGGAA 60.325 55.000 21.60 0.00 45.92 3.97
755 773 1.309688 GCCTAATTGGGCCTTGGGA 59.690 57.895 21.60 0.00 45.92 4.37
756 774 3.954837 GCCTAATTGGGCCTTGGG 58.045 61.111 21.60 4.10 45.92 4.12
762 780 1.150536 TGATCCCGCCTAATTGGGC 59.849 57.895 22.20 22.20 45.60 5.36
764 782 1.140852 TCAGTGATCCCGCCTAATTGG 59.859 52.381 0.00 0.00 39.35 3.16
765 783 2.213499 GTCAGTGATCCCGCCTAATTG 58.787 52.381 0.00 0.00 0.00 2.32
766 784 1.141053 GGTCAGTGATCCCGCCTAATT 59.859 52.381 0.00 0.00 0.00 1.40
767 785 0.759346 GGTCAGTGATCCCGCCTAAT 59.241 55.000 0.00 0.00 0.00 1.73
768 786 0.325296 AGGTCAGTGATCCCGCCTAA 60.325 55.000 0.00 0.00 0.00 2.69
769 787 0.554305 TAGGTCAGTGATCCCGCCTA 59.446 55.000 0.00 0.96 0.00 3.93
770 788 0.105453 ATAGGTCAGTGATCCCGCCT 60.105 55.000 0.00 2.00 0.00 5.52
771 789 0.759346 AATAGGTCAGTGATCCCGCC 59.241 55.000 0.00 0.00 0.00 6.13
784 802 2.482494 AGCAGTTGGGCTCTAATAGGT 58.518 47.619 0.00 0.00 41.05 3.08
939 957 4.069232 CCGAACGGCCTCTGCAGA 62.069 66.667 17.19 17.19 40.13 4.26
950 968 4.692475 AAGGGGAACGGCCGAACG 62.692 66.667 35.90 5.06 37.63 3.95
951 969 2.281970 AAAGGGGAACGGCCGAAC 60.282 61.111 35.90 23.74 37.63 3.95
952 970 2.032987 GAAAGGGGAACGGCCGAA 59.967 61.111 35.90 0.00 37.63 4.30
953 971 2.132089 AATGAAAGGGGAACGGCCGA 62.132 55.000 35.90 4.92 37.63 5.54
954 972 1.248101 AAATGAAAGGGGAACGGCCG 61.248 55.000 26.86 26.86 37.63 6.13
955 973 0.530744 GAAATGAAAGGGGAACGGCC 59.469 55.000 0.00 0.00 0.00 6.13
956 974 0.530744 GGAAATGAAAGGGGAACGGC 59.469 55.000 0.00 0.00 0.00 5.68
957 975 2.092323 GAGGAAATGAAAGGGGAACGG 58.908 52.381 0.00 0.00 0.00 4.44
958 976 2.092323 GGAGGAAATGAAAGGGGAACG 58.908 52.381 0.00 0.00 0.00 3.95
1017 1035 3.610669 CCGGAGATGGAGAGGGCG 61.611 72.222 0.00 0.00 0.00 6.13
1063 1081 3.067833 CTGAAGGAAGGGTCGAAGAAAC 58.932 50.000 0.00 0.00 39.69 2.78
1078 1096 5.165961 TCCCATGAAGAAAGTACTGAAGG 57.834 43.478 0.00 0.00 0.00 3.46
1083 1101 7.557719 CCAATATGTTCCCATGAAGAAAGTACT 59.442 37.037 0.00 0.00 32.29 2.73
1114 1132 9.710900 AATTAACACGCATCTGATTCTCATATA 57.289 29.630 0.00 0.00 0.00 0.86
1150 1168 9.044646 TCTGGTCTACTAACTCTAGAGAAGTTA 57.955 37.037 26.57 13.71 33.04 2.24
1175 1193 3.944087 ACAGGTAAGGTGCAAATCTCTC 58.056 45.455 0.00 0.00 0.00 3.20
1193 1211 3.118956 CCTAGGTCCTTAGCACAGAACAG 60.119 52.174 0.00 0.00 0.00 3.16
1248 1266 1.504446 GTTGTGTGTGCAACCACGT 59.496 52.632 11.20 0.00 45.04 4.49
1283 1301 3.059884 CCATACCATAAGTAGCACTGCG 58.940 50.000 0.00 0.00 33.42 5.18
1291 1309 8.057011 TCAGTTACTCTGACCATACCATAAGTA 58.943 37.037 0.00 0.00 46.77 2.24
1353 1377 8.344831 TCATAAAATACGAGCAATTGGATCTTG 58.655 33.333 7.72 2.61 0.00 3.02
1354 1378 8.450578 TCATAAAATACGAGCAATTGGATCTT 57.549 30.769 7.72 0.00 0.00 2.40
1389 1434 1.035139 CACCAGGCAAGAACAAGCTT 58.965 50.000 0.00 0.00 0.00 3.74
1390 1435 0.106519 ACACCAGGCAAGAACAAGCT 60.107 50.000 0.00 0.00 0.00 3.74
1410 1455 3.942130 AAAATGCCAAGCTCCACTTAC 57.058 42.857 0.00 0.00 36.04 2.34
1423 1468 8.971321 CAGAATGCATACAAATACTAAAATGCC 58.029 33.333 0.00 0.00 39.11 4.40
1562 1609 7.939782 TGCAAGTAATTTCTGTTTGAGATCAA 58.060 30.769 0.00 0.00 0.00 2.57
1630 1677 1.423395 CTCTGCAGACGGTCAACTTC 58.577 55.000 13.74 0.00 0.00 3.01
1689 1737 7.136772 GCAACTATTCAACCGTAAAAAGAACT 58.863 34.615 0.00 0.00 0.00 3.01
1713 1761 1.251251 ACTTTTGGTGCTCCAGATGC 58.749 50.000 7.68 0.00 45.22 3.91
1741 1789 1.146637 GAAGCTGCCTATGCTCGATG 58.853 55.000 0.00 0.00 40.22 3.84
1768 1816 8.703336 CCACGAGACAATGTAATACATATGAAG 58.297 37.037 10.38 0.69 37.97 3.02
1774 1822 7.284716 TCTCTACCACGAGACAATGTAATACAT 59.715 37.037 0.00 0.00 36.40 2.29
1776 1824 7.024340 TCTCTACCACGAGACAATGTAATAC 57.976 40.000 0.00 0.00 35.23 1.89
1884 1932 5.882000 TGCTCAATTCATATGCAACTACAGT 59.118 36.000 0.00 0.00 0.00 3.55
1887 1935 5.514279 GGTGCTCAATTCATATGCAACTAC 58.486 41.667 0.00 0.00 38.21 2.73
2029 2078 3.773860 ACATGTGTGTTCTCGCAAAAA 57.226 38.095 0.00 0.00 34.01 1.94
2030 2079 3.773860 AACATGTGTGTTCTCGCAAAA 57.226 38.095 0.00 0.00 45.14 2.44
2200 2249 2.360165 AGCAAAGCTCTGTCCAAAACTG 59.640 45.455 0.00 0.00 30.62 3.16
2201 2250 2.659428 AGCAAAGCTCTGTCCAAAACT 58.341 42.857 0.00 0.00 30.62 2.66
2299 2349 6.525628 CACTGCATAATCACATCACAGAAAAC 59.474 38.462 0.00 0.00 0.00 2.43
2389 2439 1.745653 GGAGCAAAGACATAACCCAGC 59.254 52.381 0.00 0.00 0.00 4.85
2433 2483 4.142337 TGCACATGTGGCAATGAAGAATAG 60.142 41.667 26.55 0.00 38.54 1.73
2565 2615 2.481952 ACTTTGAGCTTGTTGAGATCGC 59.518 45.455 0.00 0.00 43.77 4.58
2755 2921 3.386237 AGAGACGCACCTGGCCTC 61.386 66.667 3.32 0.00 40.31 4.70
2957 3126 4.967036 AGGAATTTGATTTCCCGCAAAAA 58.033 34.783 0.00 0.00 45.32 1.94
2972 3142 5.859205 CTTGCCCATTAAGCTAGGAATTT 57.141 39.130 0.00 0.00 30.72 1.82
3069 3239 0.460284 GGCCAGTCATACACCTGTCG 60.460 60.000 0.00 0.00 0.00 4.35
3127 3305 6.602410 TGGAAAATTGCCAATAGAACATGA 57.398 33.333 0.00 0.00 31.13 3.07
3128 3306 6.199531 CGATGGAAAATTGCCAATAGAACATG 59.800 38.462 0.00 0.00 39.21 3.21
3129 3307 6.275335 CGATGGAAAATTGCCAATAGAACAT 58.725 36.000 0.00 0.00 39.21 2.71
3130 3308 5.394005 CCGATGGAAAATTGCCAATAGAACA 60.394 40.000 0.00 0.00 39.21 3.18
3131 3309 5.043248 CCGATGGAAAATTGCCAATAGAAC 58.957 41.667 0.00 0.00 39.21 3.01
3132 3310 4.099266 CCCGATGGAAAATTGCCAATAGAA 59.901 41.667 0.00 0.00 39.21 2.10
3463 3641 1.290009 GGCGGCAGCTTTGTCAATT 59.710 52.632 9.17 0.00 44.37 2.32
3639 3822 6.963049 AGAGCCTTTACATTAACTTGTACG 57.037 37.500 0.00 0.00 31.98 3.67
3696 3882 2.304180 ACTTCCAGCACTAGCATTGACT 59.696 45.455 0.00 0.00 45.49 3.41
3775 3961 7.951591 AGTTTCCATACAGCAACTTAACAAAT 58.048 30.769 0.00 0.00 0.00 2.32
3795 3981 7.527457 AGTTAGGTGAAAATGCGATAAGTTTC 58.473 34.615 0.00 0.00 0.00 2.78
3815 4001 9.844790 TGTTGATATTTCAATCTGCAAAGTTAG 57.155 29.630 1.79 0.00 43.49 2.34
3908 4094 4.577693 ACCCATGCGATATGATCATTATGC 59.422 41.667 14.65 14.89 0.00 3.14
3926 4112 0.682209 CTGCCAAAGCTGCTACCCAT 60.682 55.000 0.90 0.00 40.80 4.00
3942 4128 1.004440 GGGTCAGTGACTCACCTGC 60.004 63.158 22.18 4.20 32.50 4.85
4016 4203 3.256136 ACTCCCTGTAGTTTCAGTTCGAG 59.744 47.826 0.00 0.00 34.02 4.04
4124 4311 4.557296 GCAATACAGCTTGAGCACAGAAAA 60.557 41.667 5.70 0.00 45.16 2.29
4125 4312 3.058016 GCAATACAGCTTGAGCACAGAAA 60.058 43.478 5.70 0.00 45.16 2.52
4126 4313 2.485426 GCAATACAGCTTGAGCACAGAA 59.515 45.455 5.70 0.00 45.16 3.02
4127 4314 2.079158 GCAATACAGCTTGAGCACAGA 58.921 47.619 5.70 0.00 45.16 3.41
4218 4406 2.983136 CCACTCAGCTATTTAGATCGCG 59.017 50.000 0.00 0.00 0.00 5.87
4220 4408 3.982475 TGCCACTCAGCTATTTAGATCG 58.018 45.455 0.00 0.00 0.00 3.69
4293 4481 5.646606 ACAATTTAAACCACACACAGTCAC 58.353 37.500 0.00 0.00 0.00 3.67
4294 4482 5.163602 GGACAATTTAAACCACACACAGTCA 60.164 40.000 0.00 0.00 0.00 3.41
4295 4483 5.278604 GGACAATTTAAACCACACACAGTC 58.721 41.667 0.00 0.00 0.00 3.51
4296 4484 4.098807 GGGACAATTTAAACCACACACAGT 59.901 41.667 0.00 0.00 0.00 3.55
4297 4485 4.098654 TGGGACAATTTAAACCACACACAG 59.901 41.667 0.00 0.00 31.92 3.66
4319 4507 5.578005 ATGCCATCAGTTGATTTCTTCTG 57.422 39.130 0.00 0.00 31.21 3.02
4476 4669 4.486125 TTCTATGCCACACAGCTATTCA 57.514 40.909 0.00 0.00 0.00 2.57
4477 4670 7.605691 AGATAATTCTATGCCACACAGCTATTC 59.394 37.037 0.00 0.00 0.00 1.75
4496 4689 8.218338 CTGGTAGACAGCAAATTCAGATAATT 57.782 34.615 0.00 0.00 40.97 1.40
4529 4722 3.529634 TTCGTGTCAGGCAATTTTACG 57.470 42.857 0.00 0.00 0.00 3.18
4544 4737 4.408993 TTCAGCATTGTTCTCATTCGTG 57.591 40.909 0.00 0.00 0.00 4.35
4603 4796 1.134491 ACCTACCTAGCATGCCGAAAC 60.134 52.381 15.66 0.00 0.00 2.78
4656 4851 6.839124 TGCAAATTAGAATCCAACTCATGT 57.161 33.333 0.00 0.00 0.00 3.21
4657 4852 9.406828 CATATGCAAATTAGAATCCAACTCATG 57.593 33.333 0.00 0.00 0.00 3.07
4698 4893 5.470368 TGAAGCAACAGTAGCTACAACTAG 58.530 41.667 25.28 11.85 42.53 2.57
4723 4918 4.277257 TCGCATTTCAGATACAACATGC 57.723 40.909 0.00 0.00 34.85 4.06
4771 4966 3.266636 TCAACGACAAACTTGCAGAGAA 58.733 40.909 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.