Multiple sequence alignment - TraesCS2D01G448200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G448200 chr2D 100.000 4186 0 0 1 4186 557959243 557955058 0.000000e+00 7731.0
1 TraesCS2D01G448200 chr2D 100.000 3055 0 0 4651 7705 557954593 557951539 0.000000e+00 5642.0
2 TraesCS2D01G448200 chr2D 79.153 307 26 17 3209 3498 557953338 557953053 2.210000e-40 178.0
3 TraesCS2D01G448200 chr2D 79.153 307 26 17 5906 6191 557956035 557955746 2.210000e-40 178.0
4 TraesCS2D01G448200 chr2D 87.591 137 14 2 7565 7700 420742003 420741869 1.040000e-33 156.0
5 TraesCS2D01G448200 chr2A 96.372 1075 36 3 5670 6742 698183583 698182510 0.000000e+00 1766.0
6 TraesCS2D01G448200 chr2A 96.569 816 26 2 1781 2595 698190973 698190159 0.000000e+00 1351.0
7 TraesCS2D01G448200 chr2A 93.843 877 41 6 5685 6553 698184453 698183582 0.000000e+00 1308.0
8 TraesCS2D01G448200 chr2A 95.630 778 24 2 959 1726 698192018 698191241 0.000000e+00 1240.0
9 TraesCS2D01G448200 chr2A 94.399 607 25 4 2616 3214 698189794 698189189 0.000000e+00 924.0
10 TraesCS2D01G448200 chr2A 91.050 581 40 3 7127 7703 698179847 698179275 0.000000e+00 774.0
11 TraesCS2D01G448200 chr2A 91.762 522 35 6 3209 3724 698189131 698188612 0.000000e+00 719.0
12 TraesCS2D01G448200 chr2A 79.236 785 115 29 1818 2571 698315398 698314631 3.210000e-138 503.0
13 TraesCS2D01G448200 chr2A 75.500 1049 144 56 5596 6580 698313068 698312069 7.200000e-110 409.0
14 TraesCS2D01G448200 chr2A 75.149 837 105 44 5799 6573 698302636 698301841 1.630000e-76 298.0
15 TraesCS2D01G448200 chr2A 92.537 201 15 0 6742 6942 698180119 698179919 9.780000e-74 289.0
16 TraesCS2D01G448200 chr2A 90.625 192 18 0 3023 3214 698314134 698313943 9.920000e-64 255.0
17 TraesCS2D01G448200 chr2A 73.574 526 81 37 3209 3724 698302529 698302052 1.730000e-31 148.0
18 TraesCS2D01G448200 chr2A 77.273 308 31 18 3209 3498 698183347 698183061 2.240000e-30 145.0
19 TraesCS2D01G448200 chr2A 77.163 289 39 15 3209 3495 698312763 698312500 8.060000e-30 143.0
20 TraesCS2D01G448200 chr2A 76.603 312 26 23 3209 3498 698184232 698183946 2.260000e-25 128.0
21 TraesCS2D01G448200 chr2A 80.921 152 18 6 6950 7090 572050944 572051095 8.170000e-20 110.0
22 TraesCS2D01G448200 chr2A 100.000 30 0 0 72 101 767805206 767805177 1.000000e-03 56.5
23 TraesCS2D01G448200 chr2B 94.583 1126 48 7 5983 7102 666403167 666402049 0.000000e+00 1729.0
24 TraesCS2D01G448200 chr2B 94.583 1126 48 7 5983 7102 666428387 666427269 0.000000e+00 1729.0
25 TraesCS2D01G448200 chr2B 94.853 816 39 3 1781 2595 666430834 666430021 0.000000e+00 1271.0
26 TraesCS2D01G448200 chr2B 91.749 909 34 12 840 1726 666431996 666431107 0.000000e+00 1225.0
27 TraesCS2D01G448200 chr2B 89.685 921 60 10 4702 5588 796324123 796323204 0.000000e+00 1142.0
28 TraesCS2D01G448200 chr2B 88.382 964 71 17 4651 5576 636178637 636177677 0.000000e+00 1122.0
29 TraesCS2D01G448200 chr2B 94.737 627 24 4 2596 3214 666404717 666404092 0.000000e+00 966.0
30 TraesCS2D01G448200 chr2B 94.737 627 24 4 2596 3214 666429937 666429312 0.000000e+00 966.0
31 TraesCS2D01G448200 chr2B 91.806 598 40 6 3209 3799 666404034 666403439 0.000000e+00 824.0
32 TraesCS2D01G448200 chr2B 91.806 598 40 6 3209 3799 666429254 666428659 0.000000e+00 824.0
33 TraesCS2D01G448200 chr2B 93.860 456 26 2 2141 2595 666405255 666404801 0.000000e+00 686.0
34 TraesCS2D01G448200 chr2B 80.556 648 81 22 5575 6194 666404370 666403740 2.530000e-124 457.0
35 TraesCS2D01G448200 chr2B 80.556 648 81 22 5575 6194 666429590 666428960 2.530000e-124 457.0
36 TraesCS2D01G448200 chr2B 93.208 265 17 1 5686 5949 666403430 666403166 9.380000e-104 388.0
37 TraesCS2D01G448200 chr2B 92.830 265 18 1 5686 5949 666428650 666428386 4.360000e-102 383.0
38 TraesCS2D01G448200 chr2B 91.011 178 14 2 7528 7703 666401982 666401805 9.990000e-59 239.0
39 TraesCS2D01G448200 chr2B 91.011 178 14 2 7528 7703 666427202 666427025 9.990000e-59 239.0
40 TraesCS2D01G448200 chr2B 75.926 486 61 31 3051 3498 666428650 666428183 1.700000e-46 198.0
41 TraesCS2D01G448200 chr2B 95.283 106 4 1 563 667 17113321 17113216 4.780000e-37 167.0
42 TraesCS2D01G448200 chr2B 87.050 139 15 2 7565 7703 493331300 493331165 3.720000e-33 154.0
43 TraesCS2D01G448200 chr2B 81.053 190 14 10 3325 3498 666403146 666402963 1.740000e-26 132.0
44 TraesCS2D01G448200 chr2B 78.846 156 33 0 3656 3811 666639955 666639800 1.060000e-18 106.0
45 TraesCS2D01G448200 chr5B 94.503 946 32 7 4653 5580 457985607 457984664 0.000000e+00 1441.0
46 TraesCS2D01G448200 chr5B 94.055 942 36 3 4651 5574 531949724 531950663 0.000000e+00 1411.0
47 TraesCS2D01G448200 chr5B 89.278 886 60 9 4727 5578 469811367 469810483 0.000000e+00 1077.0
48 TraesCS2D01G448200 chr5B 87.097 124 15 1 6917 7040 530948026 530948148 1.040000e-28 139.0
49 TraesCS2D01G448200 chr7A 94.725 910 29 6 4685 5576 676968120 676969028 0.000000e+00 1397.0
50 TraesCS2D01G448200 chr7A 88.791 910 66 12 4698 5573 427515837 427516744 0.000000e+00 1083.0
51 TraesCS2D01G448200 chr7A 89.262 149 15 1 7130 7277 609265476 609265624 1.320000e-42 185.0
52 TraesCS2D01G448200 chrUn 93.100 942 46 6 4652 5575 284643456 284644396 0.000000e+00 1362.0
53 TraesCS2D01G448200 chrUn 92.997 871 42 6 4723 5575 300772552 300773421 0.000000e+00 1253.0
54 TraesCS2D01G448200 chrUn 79.888 179 18 2 582 742 94210070 94210248 1.760000e-21 115.0
55 TraesCS2D01G448200 chr1D 92.479 944 49 10 4651 5576 470824342 470825281 0.000000e+00 1330.0
56 TraesCS2D01G448200 chr1D 89.604 808 44 9 4807 5580 155854411 155855212 0.000000e+00 990.0
57 TraesCS2D01G448200 chr7D 91.121 946 60 13 4651 5577 102729526 102728586 0.000000e+00 1260.0
58 TraesCS2D01G448200 chr7D 80.000 185 18 7 575 741 90306473 90306656 1.360000e-22 119.0
59 TraesCS2D01G448200 chr7D 78.977 176 20 2 582 740 47395725 47395900 3.800000e-18 104.0
60 TraesCS2D01G448200 chr5A 91.937 893 52 13 4699 5574 639095369 639094480 0.000000e+00 1232.0
61 TraesCS2D01G448200 chr5A 92.683 123 8 1 6921 7043 545602824 545602945 7.950000e-40 176.0
62 TraesCS2D01G448200 chr5A 87.200 125 15 1 6916 7040 370194805 370194928 2.900000e-29 141.0
63 TraesCS2D01G448200 chr5A 88.034 117 14 0 7125 7241 545603174 545603290 1.040000e-28 139.0
64 TraesCS2D01G448200 chr5A 85.484 124 18 0 3598 3721 54759090 54759213 6.270000e-26 130.0
65 TraesCS2D01G448200 chr5A 85.484 124 18 0 3598 3721 456982352 456982475 6.270000e-26 130.0
66 TraesCS2D01G448200 chr7B 89.396 943 76 12 4651 5574 10953180 10952243 0.000000e+00 1166.0
67 TraesCS2D01G448200 chr3D 93.082 636 26 4 4959 5576 104294973 104294338 0.000000e+00 915.0
68 TraesCS2D01G448200 chr3D 83.871 124 15 2 6918 7036 606601098 606600975 6.320000e-21 113.0
69 TraesCS2D01G448200 chr3D 95.082 61 3 0 680 740 45552313 45552253 6.360000e-16 97.1
70 TraesCS2D01G448200 chr3D 93.846 65 3 1 680 744 474591271 474591208 6.360000e-16 97.1
71 TraesCS2D01G448200 chr3D 89.394 66 7 0 676 741 561906797 561906862 4.950000e-12 84.2
72 TraesCS2D01G448200 chr3D 100.000 30 0 0 72 101 511407103 511407074 1.000000e-03 56.5
73 TraesCS2D01G448200 chr3A 89.698 728 21 10 69 742 533589314 533588587 0.000000e+00 880.0
74 TraesCS2D01G448200 chr3A 97.183 71 2 0 8 78 533589423 533589353 3.780000e-23 121.0
75 TraesCS2D01G448200 chr6A 89.947 567 29 8 134 674 69029352 69028788 0.000000e+00 706.0
76 TraesCS2D01G448200 chr6A 97.183 71 2 0 8 78 69055662 69055592 3.780000e-23 121.0
77 TraesCS2D01G448200 chr1A 91.029 379 16 9 5216 5576 49302447 49302069 5.370000e-136 496.0
78 TraesCS2D01G448200 chr4A 94.007 267 6 2 69 326 728958015 728957750 5.600000e-106 396.0
79 TraesCS2D01G448200 chr4A 88.500 200 12 1 486 674 728957664 728957465 1.670000e-56 231.0
80 TraesCS2D01G448200 chr4A 98.529 68 1 0 11 78 728958121 728958054 3.780000e-23 121.0
81 TraesCS2D01G448200 chr4A 93.443 61 4 0 367 427 728957753 728957693 2.960000e-14 91.6
82 TraesCS2D01G448200 chr6B 87.402 127 15 1 6914 7040 619037461 619037336 2.240000e-30 145.0
83 TraesCS2D01G448200 chr5D 79.592 196 21 5 557 734 64274095 64274289 1.050000e-23 122.0
84 TraesCS2D01G448200 chr5D 77.723 202 26 7 557 740 68210576 68210376 1.060000e-18 106.0
85 TraesCS2D01G448200 chr5D 78.857 175 20 1 582 739 447941583 447941409 1.370000e-17 102.0
86 TraesCS2D01G448200 chr5D 79.503 161 16 1 595 738 21248403 21248243 1.770000e-16 99.0
87 TraesCS2D01G448200 chr4B 97.143 35 1 0 3124 3158 632122487 632122453 8.350000e-05 60.2
88 TraesCS2D01G448200 chr4B 97.059 34 1 0 3124 3157 631896250 631896217 3.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G448200 chr2D 557951539 557959243 7704 True 3432.250000 7731 89.576500 1 7705 4 chr2D.!!$R2 7704
1 TraesCS2D01G448200 chr2A 698188612 698192018 3406 True 1058.500000 1351 94.590000 959 3724 4 chr2A.!!$R3 2765
2 TraesCS2D01G448200 chr2A 698179275 698184453 5178 True 735.000000 1766 87.946333 3209 7703 6 chr2A.!!$R2 4494
3 TraesCS2D01G448200 chr2A 698312069 698315398 3329 True 327.500000 503 80.631000 1818 6580 4 chr2A.!!$R5 4762
4 TraesCS2D01G448200 chr2A 698301841 698302636 795 True 223.000000 298 74.361500 3209 6573 2 chr2A.!!$R4 3364
5 TraesCS2D01G448200 chr2B 796323204 796324123 919 True 1142.000000 1142 89.685000 4702 5588 1 chr2B.!!$R5 886
6 TraesCS2D01G448200 chr2B 636177677 636178637 960 True 1122.000000 1122 88.382000 4651 5576 1 chr2B.!!$R3 925
7 TraesCS2D01G448200 chr2B 666427025 666431996 4971 True 810.222222 1729 89.783444 840 7703 9 chr2B.!!$R7 6863
8 TraesCS2D01G448200 chr2B 666401805 666405255 3450 True 677.625000 1729 90.101750 2141 7703 8 chr2B.!!$R6 5562
9 TraesCS2D01G448200 chr5B 457984664 457985607 943 True 1441.000000 1441 94.503000 4653 5580 1 chr5B.!!$R1 927
10 TraesCS2D01G448200 chr5B 531949724 531950663 939 False 1411.000000 1411 94.055000 4651 5574 1 chr5B.!!$F2 923
11 TraesCS2D01G448200 chr5B 469810483 469811367 884 True 1077.000000 1077 89.278000 4727 5578 1 chr5B.!!$R2 851
12 TraesCS2D01G448200 chr7A 676968120 676969028 908 False 1397.000000 1397 94.725000 4685 5576 1 chr7A.!!$F3 891
13 TraesCS2D01G448200 chr7A 427515837 427516744 907 False 1083.000000 1083 88.791000 4698 5573 1 chr7A.!!$F1 875
14 TraesCS2D01G448200 chrUn 284643456 284644396 940 False 1362.000000 1362 93.100000 4652 5575 1 chrUn.!!$F2 923
15 TraesCS2D01G448200 chrUn 300772552 300773421 869 False 1253.000000 1253 92.997000 4723 5575 1 chrUn.!!$F3 852
16 TraesCS2D01G448200 chr1D 470824342 470825281 939 False 1330.000000 1330 92.479000 4651 5576 1 chr1D.!!$F2 925
17 TraesCS2D01G448200 chr1D 155854411 155855212 801 False 990.000000 990 89.604000 4807 5580 1 chr1D.!!$F1 773
18 TraesCS2D01G448200 chr7D 102728586 102729526 940 True 1260.000000 1260 91.121000 4651 5577 1 chr7D.!!$R1 926
19 TraesCS2D01G448200 chr5A 639094480 639095369 889 True 1232.000000 1232 91.937000 4699 5574 1 chr5A.!!$R1 875
20 TraesCS2D01G448200 chr7B 10952243 10953180 937 True 1166.000000 1166 89.396000 4651 5574 1 chr7B.!!$R1 923
21 TraesCS2D01G448200 chr3D 104294338 104294973 635 True 915.000000 915 93.082000 4959 5576 1 chr3D.!!$R2 617
22 TraesCS2D01G448200 chr3A 533588587 533589423 836 True 500.500000 880 93.440500 8 742 2 chr3A.!!$R1 734
23 TraesCS2D01G448200 chr6A 69028788 69029352 564 True 706.000000 706 89.947000 134 674 1 chr6A.!!$R1 540
24 TraesCS2D01G448200 chr4A 728957465 728958121 656 True 209.900000 396 93.619750 11 674 4 chr4A.!!$R1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 964 0.109723 AAACCAGGAAAGTGCGGCTA 59.890 50.0 0.00 0.00 0.00 3.93 F
818 965 0.321653 AACCAGGAAAGTGCGGCTAG 60.322 55.0 0.00 0.00 0.00 3.42 F
2187 2594 0.179001 CTGAGGGACAAAACCGGGTT 60.179 55.0 6.59 6.59 0.00 4.11 F
3878 4890 0.035056 ATGCCTGGTTACCTGCTGTC 60.035 55.0 15.19 1.26 0.00 3.51 F
4048 5060 0.034380 GGGCTAGAAACACCTTCCCC 60.034 60.0 0.00 0.00 34.21 4.81 F
4060 5072 0.107654 CCTTCCCCTGATCAACGGAC 60.108 60.0 9.46 0.00 0.00 4.79 F
4064 5076 0.178068 CCCCTGATCAACGGACGATT 59.822 55.0 9.61 0.00 0.00 3.34 F
4083 5095 0.683504 TAGTTCTCTGGACCCGCTCC 60.684 60.0 0.00 0.00 39.97 4.70 F
6403 7525 0.609131 AGTGGGTTGCCTGTACATGC 60.609 55.0 15.39 15.39 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2451 0.401738 CTGGGGTTGAAGAAGGCAGA 59.598 55.000 0.00 0.0 0.00 4.26 R
2418 2839 1.334869 GAAAGCTGGTCACAACTGTGG 59.665 52.381 9.87 0.0 45.65 4.17 R
4029 5041 0.034380 GGGGAAGGTGTTTCTAGCCC 60.034 60.000 0.00 0.0 36.03 5.19 R
5700 6766 0.835941 ATGGTCTGTGAGGATGGAGC 59.164 55.000 0.00 0.0 0.00 4.70 R
5921 6987 6.199908 CGAATGCAGGTGTTCAACAAATTTAA 59.800 34.615 0.00 0.0 0.00 1.52 R
6084 7159 4.263639 TGGCAGATATGATCCAAGGGATTC 60.264 45.833 0.00 0.0 43.27 2.52 R
6403 7525 6.034683 CGAAGACCTAGAACCGTAAAAATGAG 59.965 42.308 0.00 0.0 0.00 2.90 R
6418 7540 3.695060 TGGAGTTCTTAGCGAAGACCTAG 59.305 47.826 8.95 0.0 41.52 3.02 R
7237 10754 1.073923 TCTCTCCCAAAAGAACCCAGC 59.926 52.381 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 448 9.141400 ACAGAGTCTAGATTAAACGATCAAAAC 57.859 33.333 0.00 0.00 0.00 2.43
498 616 1.792949 GCTGTAGAACCAACAGTGACG 59.207 52.381 0.00 0.00 45.01 4.35
658 788 2.445682 ACACAGCCAGGTACCAAAAA 57.554 45.000 15.94 0.00 0.00 1.94
742 889 6.407074 CCGGATATAGAGGCTTGGGTATTTAG 60.407 46.154 0.00 0.00 0.00 1.85
743 890 6.350103 GGATATAGAGGCTTGGGTATTTAGC 58.650 44.000 0.00 0.00 0.00 3.09
744 891 6.070194 GGATATAGAGGCTTGGGTATTTAGCA 60.070 42.308 0.00 0.00 36.64 3.49
745 892 5.850046 ATAGAGGCTTGGGTATTTAGCAT 57.150 39.130 0.00 0.00 36.64 3.79
746 893 6.952605 ATAGAGGCTTGGGTATTTAGCATA 57.047 37.500 0.00 0.00 36.64 3.14
747 894 5.646692 AGAGGCTTGGGTATTTAGCATAA 57.353 39.130 0.00 0.00 36.64 1.90
748 895 6.206180 AGAGGCTTGGGTATTTAGCATAAT 57.794 37.500 0.00 0.00 36.64 1.28
749 896 7.329746 AGAGGCTTGGGTATTTAGCATAATA 57.670 36.000 0.00 0.00 36.64 0.98
750 897 7.933223 AGAGGCTTGGGTATTTAGCATAATAT 58.067 34.615 0.00 0.00 36.64 1.28
751 898 9.057911 AGAGGCTTGGGTATTTAGCATAATATA 57.942 33.333 0.00 0.00 36.64 0.86
752 899 9.853177 GAGGCTTGGGTATTTAGCATAATATAT 57.147 33.333 0.00 0.00 36.64 0.86
799 946 3.791973 AAAAAGTGTGCGATGGTTCAA 57.208 38.095 0.00 0.00 0.00 2.69
800 947 3.791973 AAAAGTGTGCGATGGTTCAAA 57.208 38.095 0.00 0.00 0.00 2.69
801 948 2.774439 AAGTGTGCGATGGTTCAAAC 57.226 45.000 0.00 0.00 0.00 2.93
813 960 2.119671 GTTCAAACCAGGAAAGTGCG 57.880 50.000 0.00 0.00 0.00 5.34
814 961 1.028905 TTCAAACCAGGAAAGTGCGG 58.971 50.000 0.00 0.00 0.00 5.69
815 962 1.007387 CAAACCAGGAAAGTGCGGC 60.007 57.895 0.00 0.00 0.00 6.53
816 963 1.152756 AAACCAGGAAAGTGCGGCT 60.153 52.632 0.00 0.00 0.00 5.52
817 964 0.109723 AAACCAGGAAAGTGCGGCTA 59.890 50.000 0.00 0.00 0.00 3.93
818 965 0.321653 AACCAGGAAAGTGCGGCTAG 60.322 55.000 0.00 0.00 0.00 3.42
819 966 1.450312 CCAGGAAAGTGCGGCTAGG 60.450 63.158 0.00 0.00 0.00 3.02
820 967 1.296715 CAGGAAAGTGCGGCTAGGT 59.703 57.895 0.00 0.00 0.00 3.08
821 968 1.021390 CAGGAAAGTGCGGCTAGGTG 61.021 60.000 0.00 0.00 0.00 4.00
822 969 1.745489 GGAAAGTGCGGCTAGGTGG 60.745 63.158 0.00 0.00 0.00 4.61
823 970 1.003718 GAAAGTGCGGCTAGGTGGT 60.004 57.895 0.00 0.00 0.00 4.16
824 971 1.003718 AAAGTGCGGCTAGGTGGTC 60.004 57.895 0.00 0.00 0.00 4.02
825 972 2.465055 AAAGTGCGGCTAGGTGGTCC 62.465 60.000 0.00 0.00 0.00 4.46
826 973 4.468689 GTGCGGCTAGGTGGTCCC 62.469 72.222 0.00 0.00 0.00 4.46
832 979 4.143333 CTAGGTGGTCCCCGCGTG 62.143 72.222 4.92 0.00 34.37 5.34
905 1052 2.967946 GCACCCACCCAGTAGTCCC 61.968 68.421 0.00 0.00 0.00 4.46
908 1055 0.546988 ACCCACCCAGTAGTCCCTTC 60.547 60.000 0.00 0.00 0.00 3.46
919 1066 5.238214 CCAGTAGTCCCTTCGTACAGTATAC 59.762 48.000 0.00 0.00 0.00 1.47
920 1067 5.819379 CAGTAGTCCCTTCGTACAGTATACA 59.181 44.000 5.50 0.00 0.00 2.29
930 1077 8.235226 CCTTCGTACAGTATACATATACCAGTG 58.765 40.741 5.50 1.66 39.42 3.66
932 1079 6.149973 TCGTACAGTATACATATACCAGTGCC 59.850 42.308 5.50 1.84 39.42 5.01
949 1096 2.989253 CAGTGGGCGTTTTCCCCC 60.989 66.667 0.00 0.00 45.97 5.40
964 1111 1.301716 CCCCCGAGTCGGCATATTG 60.302 63.158 26.60 11.06 46.86 1.90
1443 1609 2.571757 GTCCGCATCCTGACGACA 59.428 61.111 0.00 0.00 0.00 4.35
1444 1610 1.517257 GTCCGCATCCTGACGACAG 60.517 63.158 7.98 7.98 43.12 3.51
1511 1677 0.804989 CACTCGCCCAAATTCAGGTC 59.195 55.000 0.00 0.00 0.00 3.85
1595 1774 3.692593 TGAGCATCACATTGAATCCTGTG 59.307 43.478 6.69 6.69 42.56 3.66
1619 1798 2.750657 GGGCATCCCTGGACTGGAG 61.751 68.421 0.00 0.00 41.34 3.86
1635 1814 3.173965 CTGGAGACTGGTAAGGGAGAAA 58.826 50.000 0.00 0.00 0.00 2.52
1703 1882 2.756400 CAGGTTGCTACTGCCCCA 59.244 61.111 0.00 0.00 38.71 4.96
1704 1883 1.377725 CAGGTTGCTACTGCCCCAG 60.378 63.158 0.00 0.00 38.71 4.45
1726 1905 2.367567 GACTTGCTTCCCATCGGGTATA 59.632 50.000 0.00 0.00 44.74 1.47
1727 1906 2.775384 ACTTGCTTCCCATCGGGTATAA 59.225 45.455 0.00 0.00 44.74 0.98
1728 1907 3.394606 ACTTGCTTCCCATCGGGTATAAT 59.605 43.478 0.00 0.00 44.74 1.28
1729 1908 4.595781 ACTTGCTTCCCATCGGGTATAATA 59.404 41.667 0.00 0.00 44.74 0.98
1730 1909 5.072600 ACTTGCTTCCCATCGGGTATAATAA 59.927 40.000 0.00 0.00 44.74 1.40
1732 1911 4.595781 TGCTTCCCATCGGGTATAATAACT 59.404 41.667 0.00 0.00 44.74 2.24
1815 2214 7.222999 GTCCAAGTTGTACTATCTATTGACTGC 59.777 40.741 1.45 0.00 0.00 4.40
2016 2423 6.125029 AGTCTCCCCTATTTTTCACATGATG 58.875 40.000 0.00 0.00 0.00 3.07
2067 2474 2.160205 GCCTTCTTCAACCCCAGTTAC 58.840 52.381 0.00 0.00 33.27 2.50
2072 2479 1.624813 CTTCAACCCCAGTTACCGGTA 59.375 52.381 11.16 11.16 33.27 4.02
2150 2557 4.031028 CAGCTAATGTTCGCTATGTTTGC 58.969 43.478 0.00 0.00 34.58 3.68
2187 2594 0.179001 CTGAGGGACAAAACCGGGTT 60.179 55.000 6.59 6.59 0.00 4.11
2253 2660 8.286800 TGTTTCCAGTTTGTAAAGAACATATCG 58.713 33.333 0.00 0.00 38.10 2.92
2400 2821 2.224305 GGCACCTACTTCAGTCAAGTGT 60.224 50.000 0.00 0.00 45.60 3.55
2418 2839 6.318648 TCAAGTGTGATGGCAGGTAATTAATC 59.681 38.462 0.00 0.00 0.00 1.75
2449 2870 1.558756 ACCAGCTTTCCATCTCTCCTG 59.441 52.381 0.00 0.00 0.00 3.86
2453 2874 1.340405 GCTTTCCATCTCTCCTGCCAA 60.340 52.381 0.00 0.00 0.00 4.52
2467 2888 2.886523 CCTGCCAATTGAACTTCAGTCA 59.113 45.455 7.12 0.00 0.00 3.41
2487 2909 5.654650 AGTCACACTTTTCACATGGGTTTTA 59.345 36.000 0.00 0.00 0.00 1.52
2497 2920 2.492451 TGGGTTTTAGGATGCCCCA 58.508 52.632 0.00 0.00 43.02 4.96
2563 2990 4.081406 TGCTGCACTTCCATCTTTGTTAT 58.919 39.130 0.00 0.00 0.00 1.89
2570 2997 6.543831 GCACTTCCATCTTTGTTATAGACCAT 59.456 38.462 0.00 0.00 0.00 3.55
2573 3000 8.960591 ACTTCCATCTTTGTTATAGACCATTTG 58.039 33.333 0.00 0.00 0.00 2.32
2587 3014 2.040278 ACCATTTGGCTGCTCTTACTGA 59.960 45.455 0.00 0.00 39.32 3.41
2590 3017 2.928801 TTGGCTGCTCTTACTGAACA 57.071 45.000 0.00 0.00 0.00 3.18
2635 3408 4.654262 CCTAAGGCATTACTTGACCCTCTA 59.346 45.833 0.00 0.00 31.49 2.43
2649 3422 8.097662 ACTTGACCCTCTACTTTTCATCTTAAG 58.902 37.037 0.00 0.00 0.00 1.85
2734 3507 7.575414 TCTTCTGTTGGTTGCTTACATTTTA 57.425 32.000 0.00 0.00 0.00 1.52
2776 3564 8.464404 CATGGTAATTCATATAAGGCATCAAGG 58.536 37.037 0.00 0.00 0.00 3.61
2911 3704 8.467963 AACAATAGTATGCCATTGATTGATGA 57.532 30.769 8.78 0.00 36.00 2.92
2952 3748 5.934402 TCTACACTAGAAACATCTTCCCC 57.066 43.478 0.00 0.00 0.00 4.81
2984 3780 8.874816 GTTTTCTGTTGCCATTTTTACTTAACA 58.125 29.630 0.00 0.00 0.00 2.41
3195 4082 2.935676 GCTACCTGCCACCAGTTCTAAC 60.936 54.545 0.00 0.00 37.38 2.34
3196 4083 1.435256 ACCTGCCACCAGTTCTAACT 58.565 50.000 0.00 0.00 40.60 2.24
3211 4098 7.391148 AGTTCTAACTGCAAAACTCTTTTCA 57.609 32.000 0.00 0.00 37.98 2.69
3212 4099 7.475840 AGTTCTAACTGCAAAACTCTTTTCAG 58.524 34.615 0.00 0.00 37.98 3.02
3447 4423 6.489022 GGTAAATTAACTGAACACCCTCAACT 59.511 38.462 0.00 0.00 0.00 3.16
3499 4475 5.082059 GCGCATATTGATACCTGAAATTCG 58.918 41.667 0.30 0.00 0.00 3.34
3506 4482 6.417191 TTGATACCTGAAATTCGTAGTTGC 57.583 37.500 0.00 0.00 0.00 4.17
3522 4498 3.209410 AGTTGCCACTTGTCAGAGAAAG 58.791 45.455 0.00 0.00 0.00 2.62
3524 4500 3.281727 TGCCACTTGTCAGAGAAAGTT 57.718 42.857 0.00 0.00 34.41 2.66
3548 4524 7.468141 TCATCACCGATAGTAATATTCTGCT 57.532 36.000 0.00 0.00 0.00 4.24
3577 4553 7.485913 CCATGTTTTATAACTCAGCATGTTGAC 59.514 37.037 8.32 0.00 35.24 3.18
3731 4741 0.450983 GCACTTGCATCTGGAAGCTC 59.549 55.000 10.87 0.64 45.75 4.09
3746 4756 5.988287 TGGAAGCTCATAATCATACACACA 58.012 37.500 0.00 0.00 0.00 3.72
3813 4823 4.901197 TTTTGGGTACAGATCTAGCACA 57.099 40.909 0.00 0.00 0.00 4.57
3818 4828 4.225042 TGGGTACAGATCTAGCACAACAAT 59.775 41.667 0.00 0.00 0.00 2.71
3820 4830 4.034510 GGTACAGATCTAGCACAACAATGC 59.965 45.833 0.00 0.00 46.50 3.56
3832 4842 2.821378 ACAACAATGCAGCAGCTATCAA 59.179 40.909 0.00 0.00 42.74 2.57
3833 4843 3.256383 ACAACAATGCAGCAGCTATCAAA 59.744 39.130 0.00 0.00 42.74 2.69
3850 4862 2.095008 TCAAACTGCGTTGTTCTTTGCA 60.095 40.909 0.00 0.00 35.75 4.08
3854 4866 2.046313 CTGCGTTGTTCTTTGCACATC 58.954 47.619 0.00 0.00 33.12 3.06
3867 4879 1.108776 GCACATCATCAATGCCTGGT 58.891 50.000 0.00 0.00 39.12 4.00
3874 4886 1.406539 CATCAATGCCTGGTTACCTGC 59.593 52.381 2.07 6.24 0.00 4.85
3878 4890 0.035056 ATGCCTGGTTACCTGCTGTC 60.035 55.000 15.19 1.26 0.00 3.51
3879 4891 1.374947 GCCTGGTTACCTGCTGTCA 59.625 57.895 2.07 0.00 0.00 3.58
3880 4892 0.035056 GCCTGGTTACCTGCTGTCAT 60.035 55.000 2.07 0.00 0.00 3.06
3888 4900 5.472137 TGGTTACCTGCTGTCATTTTCTAAC 59.528 40.000 2.07 0.00 0.00 2.34
3891 4903 4.074970 ACCTGCTGTCATTTTCTAACTGG 58.925 43.478 0.00 0.00 0.00 4.00
3893 4905 4.083110 CCTGCTGTCATTTTCTAACTGGTG 60.083 45.833 0.00 0.00 0.00 4.17
3901 4913 7.502226 TGTCATTTTCTAACTGGTGAACTCAAT 59.498 33.333 0.00 0.00 0.00 2.57
3907 4919 9.793259 TTTCTAACTGGTGAACTCAATTAATCT 57.207 29.630 0.00 0.00 0.00 2.40
3933 4945 8.588290 ATGTAATTGTACTTTAGAAATGCCCA 57.412 30.769 0.00 0.00 0.00 5.36
3934 4946 8.588290 TGTAATTGTACTTTAGAAATGCCCAT 57.412 30.769 0.00 0.00 0.00 4.00
3935 4947 9.030452 TGTAATTGTACTTTAGAAATGCCCATT 57.970 29.630 0.00 0.00 0.00 3.16
3944 4956 6.788598 TTAGAAATGCCCATTAGAAATGCA 57.211 33.333 0.00 0.00 36.23 3.96
3976 4988 1.475213 GCAAGGGGCTATCTACACCAC 60.475 57.143 0.00 0.00 40.25 4.16
3977 4989 2.119495 CAAGGGGCTATCTACACCACT 58.881 52.381 0.00 0.00 39.52 4.00
3978 4990 1.794714 AGGGGCTATCTACACCACTG 58.205 55.000 0.00 0.00 35.32 3.66
3979 4991 1.291033 AGGGGCTATCTACACCACTGA 59.709 52.381 0.00 0.00 35.32 3.41
3981 4993 3.142217 AGGGGCTATCTACACCACTGATA 59.858 47.826 0.00 0.00 35.32 2.15
3982 4994 3.511934 GGGGCTATCTACACCACTGATAG 59.488 52.174 0.00 0.00 41.29 2.08
3997 5009 8.346300 CACCACTGATAGTAGTAGTAGTTCATG 58.654 40.741 0.00 0.00 0.00 3.07
4001 5013 9.509956 ACTGATAGTAGTAGTAGTTCATGGATC 57.490 37.037 0.00 0.00 0.00 3.36
4002 5014 8.865420 TGATAGTAGTAGTAGTTCATGGATCC 57.135 38.462 4.20 4.20 0.00 3.36
4029 5041 7.654568 TGAAATGCTATGCCATAAAAGATCTG 58.345 34.615 0.00 0.00 0.00 2.90
4035 5047 4.090761 TGCCATAAAAGATCTGGGCTAG 57.909 45.455 17.84 0.00 41.86 3.42
4041 5053 6.038714 CCATAAAAGATCTGGGCTAGAAACAC 59.961 42.308 4.15 0.00 39.30 3.32
4045 5057 3.198853 AGATCTGGGCTAGAAACACCTTC 59.801 47.826 4.15 0.00 39.30 3.46
4046 5058 1.628846 TCTGGGCTAGAAACACCTTCC 59.371 52.381 0.00 0.00 34.21 3.46
4047 5059 0.696501 TGGGCTAGAAACACCTTCCC 59.303 55.000 0.00 0.00 34.21 3.97
4048 5060 0.034380 GGGCTAGAAACACCTTCCCC 60.034 60.000 0.00 0.00 34.21 4.81
4050 5062 1.340114 GGCTAGAAACACCTTCCCCTG 60.340 57.143 0.00 0.00 34.21 4.45
4051 5063 1.628846 GCTAGAAACACCTTCCCCTGA 59.371 52.381 0.00 0.00 34.21 3.86
4052 5064 2.239907 GCTAGAAACACCTTCCCCTGAT 59.760 50.000 0.00 0.00 34.21 2.90
4053 5065 3.682999 GCTAGAAACACCTTCCCCTGATC 60.683 52.174 0.00 0.00 34.21 2.92
4054 5066 2.348472 AGAAACACCTTCCCCTGATCA 58.652 47.619 0.00 0.00 34.21 2.92
4055 5067 2.716424 AGAAACACCTTCCCCTGATCAA 59.284 45.455 0.00 0.00 34.21 2.57
4056 5068 2.586648 AACACCTTCCCCTGATCAAC 57.413 50.000 0.00 0.00 0.00 3.18
4057 5069 0.324943 ACACCTTCCCCTGATCAACG 59.675 55.000 0.00 0.00 0.00 4.10
4058 5070 0.392998 CACCTTCCCCTGATCAACGG 60.393 60.000 0.00 0.00 0.00 4.44
4059 5071 0.546747 ACCTTCCCCTGATCAACGGA 60.547 55.000 9.61 7.99 0.00 4.69
4060 5072 0.107654 CCTTCCCCTGATCAACGGAC 60.108 60.000 9.46 0.00 0.00 4.79
4061 5073 0.460284 CTTCCCCTGATCAACGGACG 60.460 60.000 9.46 5.18 0.00 4.79
4062 5074 0.901114 TTCCCCTGATCAACGGACGA 60.901 55.000 9.46 0.00 0.00 4.20
4063 5075 0.686441 TCCCCTGATCAACGGACGAT 60.686 55.000 9.61 0.00 0.00 3.73
4064 5076 0.178068 CCCCTGATCAACGGACGATT 59.822 55.000 9.61 0.00 0.00 3.34
4065 5077 1.411246 CCCCTGATCAACGGACGATTA 59.589 52.381 9.61 0.00 0.00 1.75
4066 5078 2.545952 CCCCTGATCAACGGACGATTAG 60.546 54.545 9.61 0.00 0.00 1.73
4067 5079 2.100916 CCCTGATCAACGGACGATTAGT 59.899 50.000 2.56 0.00 0.00 2.24
4068 5080 3.430374 CCCTGATCAACGGACGATTAGTT 60.430 47.826 2.56 0.00 0.00 2.24
4069 5081 3.797256 CCTGATCAACGGACGATTAGTTC 59.203 47.826 0.00 0.00 0.00 3.01
4070 5082 4.440250 CCTGATCAACGGACGATTAGTTCT 60.440 45.833 0.00 0.00 0.00 3.01
4071 5083 4.669318 TGATCAACGGACGATTAGTTCTC 58.331 43.478 0.00 0.00 0.00 2.87
4072 5084 4.398358 TGATCAACGGACGATTAGTTCTCT 59.602 41.667 0.00 0.00 0.00 3.10
4073 5085 4.092771 TCAACGGACGATTAGTTCTCTG 57.907 45.455 0.00 0.00 0.00 3.35
4074 5086 3.119602 TCAACGGACGATTAGTTCTCTGG 60.120 47.826 0.00 0.00 0.00 3.86
4075 5087 2.719739 ACGGACGATTAGTTCTCTGGA 58.280 47.619 0.00 0.00 0.00 3.86
4076 5088 2.422832 ACGGACGATTAGTTCTCTGGAC 59.577 50.000 0.00 0.00 0.00 4.02
4077 5089 2.223525 CGGACGATTAGTTCTCTGGACC 60.224 54.545 0.00 0.00 0.00 4.46
4078 5090 2.101082 GGACGATTAGTTCTCTGGACCC 59.899 54.545 0.00 0.00 0.00 4.46
4079 5091 1.749634 ACGATTAGTTCTCTGGACCCG 59.250 52.381 0.00 0.00 0.00 5.28
4080 5092 1.536284 CGATTAGTTCTCTGGACCCGC 60.536 57.143 0.00 0.00 0.00 6.13
4081 5093 1.757699 GATTAGTTCTCTGGACCCGCT 59.242 52.381 0.00 0.00 0.00 5.52
4082 5094 1.183549 TTAGTTCTCTGGACCCGCTC 58.816 55.000 0.00 0.00 0.00 5.03
4083 5095 0.683504 TAGTTCTCTGGACCCGCTCC 60.684 60.000 0.00 0.00 39.97 4.70
4084 5096 2.683933 TTCTCTGGACCCGCTCCC 60.684 66.667 0.00 0.00 38.49 4.30
4100 5112 4.157120 CCGTCCCCGCAACCCTAG 62.157 72.222 0.00 0.00 0.00 3.02
4101 5113 4.832608 CGTCCCCGCAACCCTAGC 62.833 72.222 0.00 0.00 0.00 3.42
4102 5114 4.484872 GTCCCCGCAACCCTAGCC 62.485 72.222 0.00 0.00 0.00 3.93
5421 6487 0.976073 AGATTCCGGGGCTTCTTCGA 60.976 55.000 0.00 0.00 0.00 3.71
5582 6648 4.906065 AACCCTTTTTCGGTAGAAACAC 57.094 40.909 0.00 0.00 45.11 3.32
5584 6650 3.117776 ACCCTTTTTCGGTAGAAACACCT 60.118 43.478 0.00 0.00 45.11 4.00
5588 6654 2.845363 TTCGGTAGAAACACCTTCCC 57.155 50.000 0.00 0.00 36.35 3.97
5589 6655 0.978907 TCGGTAGAAACACCTTCCCC 59.021 55.000 0.00 0.00 36.35 4.81
5590 6656 0.981943 CGGTAGAAACACCTTCCCCT 59.018 55.000 0.00 0.00 36.35 4.79
5591 6657 1.350019 CGGTAGAAACACCTTCCCCTT 59.650 52.381 0.00 0.00 36.35 3.95
5592 6658 2.791655 GGTAGAAACACCTTCCCCTTG 58.208 52.381 0.00 0.00 35.55 3.61
5593 6659 2.374170 GGTAGAAACACCTTCCCCTTGA 59.626 50.000 0.00 0.00 35.55 3.02
5594 6660 3.181437 GGTAGAAACACCTTCCCCTTGAA 60.181 47.826 0.00 0.00 35.55 2.69
5595 6661 3.903530 AGAAACACCTTCCCCTTGAAT 57.096 42.857 0.00 0.00 34.21 2.57
5596 6662 4.199002 AGAAACACCTTCCCCTTGAATT 57.801 40.909 0.00 0.00 34.21 2.17
5597 6663 4.556697 AGAAACACCTTCCCCTTGAATTT 58.443 39.130 0.00 0.00 34.21 1.82
5598 6664 4.968719 AGAAACACCTTCCCCTTGAATTTT 59.031 37.500 0.00 0.00 34.21 1.82
5599 6665 4.955811 AACACCTTCCCCTTGAATTTTC 57.044 40.909 0.00 0.00 31.06 2.29
5600 6666 3.239449 ACACCTTCCCCTTGAATTTTCC 58.761 45.455 0.00 0.00 31.06 3.13
5601 6667 3.238597 CACCTTCCCCTTGAATTTTCCA 58.761 45.455 0.00 0.00 31.06 3.53
5606 6672 5.491070 CTTCCCCTTGAATTTTCCATTTCC 58.509 41.667 0.00 0.00 31.06 3.13
5607 6673 4.497516 TCCCCTTGAATTTTCCATTTCCA 58.502 39.130 0.00 0.00 0.00 3.53
5625 6691 4.069300 TCCATTTTTGCTTCATGTTGCA 57.931 36.364 10.37 10.37 37.42 4.08
5626 6692 4.643463 TCCATTTTTGCTTCATGTTGCAT 58.357 34.783 14.01 0.13 39.07 3.96
5627 6693 4.452795 TCCATTTTTGCTTCATGTTGCATG 59.547 37.500 14.01 10.09 39.07 4.06
5628 6694 4.214545 CCATTTTTGCTTCATGTTGCATGT 59.785 37.500 14.01 1.93 39.07 3.21
5630 6696 4.797693 TTTTGCTTCATGTTGCATGTTG 57.202 36.364 14.01 4.92 39.07 3.33
5631 6697 3.455990 TTGCTTCATGTTGCATGTTGT 57.544 38.095 14.01 0.00 39.07 3.32
5632 6698 4.581077 TTGCTTCATGTTGCATGTTGTA 57.419 36.364 14.01 1.45 39.07 2.41
5641 6707 4.701765 TGTTGCATGTTGTATTTTTGCCT 58.298 34.783 0.00 0.00 32.39 4.75
5643 6709 3.661944 TGCATGTTGTATTTTTGCCTGG 58.338 40.909 0.00 0.00 32.39 4.45
5668 6734 5.346181 ACCTGATGCTACTTCTAAGTTCC 57.654 43.478 0.00 0.00 40.37 3.62
5700 6766 4.228912 CCTGTTGCAGGTTCTTTTAGTG 57.771 45.455 6.99 0.00 45.82 2.74
5865 6931 1.490490 AGGTGCTCCAACTTTCACAGA 59.510 47.619 7.70 0.00 35.89 3.41
5921 6987 9.260002 CAGTTGCAAATTCAGGTTAAGTATTTT 57.740 29.630 0.00 0.00 0.00 1.82
6018 7093 4.103311 ACATAGAGAACTAATCAAGGGGCC 59.897 45.833 0.00 0.00 32.04 5.80
6084 7159 5.064452 CAGTCTCACAGCCTGCTAAAATTAG 59.936 44.000 0.00 0.00 0.00 1.73
6212 7293 8.970691 AATTGTTTCAGAGAAATTCCATTACG 57.029 30.769 0.00 0.00 0.00 3.18
6403 7525 0.609131 AGTGGGTTGCCTGTACATGC 60.609 55.000 15.39 15.39 0.00 4.06
6418 7540 5.933790 TGTACATGCTCATTTTTACGGTTC 58.066 37.500 0.00 0.00 0.00 3.62
6640 7764 2.621055 CAGACCCAGTCGATCTAAGAGG 59.379 54.545 0.00 0.00 37.67 3.69
6642 7766 1.288335 ACCCAGTCGATCTAAGAGGGT 59.712 52.381 0.00 0.00 42.96 4.34
6701 7826 6.584185 AAAGGCAACGGACTAATAAATTGT 57.416 33.333 0.00 0.00 46.39 2.71
6708 7833 7.700656 GCAACGGACTAATAAATTGTTAATGCT 59.299 33.333 0.00 0.00 0.00 3.79
6738 7863 0.761187 TGGCTTTCTGCTCAGTCACT 59.239 50.000 0.00 0.00 42.39 3.41
6802 10318 0.620030 TTGGAATGCAGGAGCTAGCA 59.380 50.000 18.83 9.98 45.92 3.49
6862 10378 0.745845 CCTGATTGAGTCGGGCCTTG 60.746 60.000 0.84 0.00 46.14 3.61
6874 10390 4.099170 GCCTTGCTCGCTGTGCTG 62.099 66.667 4.72 0.00 0.00 4.41
6904 10420 5.238432 AGTCGATTAGTTGCAATTGTGTTGA 59.762 36.000 0.59 0.00 0.00 3.18
6911 10427 6.594788 AGTTGCAATTGTGTTGAAGGATAT 57.405 33.333 0.59 0.00 0.00 1.63
6926 10442 8.429641 GTTGAAGGATATCATTAAGGAGGTGTA 58.570 37.037 1.96 0.00 0.00 2.90
6938 10454 7.931015 TTAAGGAGGTGTATGGATTACAGAT 57.069 36.000 0.00 0.00 41.45 2.90
6978 10494 7.719633 GGTAAAGGAATTAGATCATGCTGGTAA 59.280 37.037 0.00 0.00 0.00 2.85
6983 10499 0.469917 AGATCATGCTGGTAACGGGG 59.530 55.000 0.00 0.00 45.89 5.73
6984 10500 0.535102 GATCATGCTGGTAACGGGGG 60.535 60.000 0.00 0.00 45.89 5.40
7028 10544 4.582701 TGTTTGGTTCATGCCTGTAAAG 57.417 40.909 0.00 0.00 0.00 1.85
7049 10565 9.535878 GTAAAGGAATCTAGTTAGACTTCATGG 57.464 37.037 0.00 0.00 34.72 3.66
7161 10678 3.365265 GACAGGGCCGCACCAAAG 61.365 66.667 0.00 0.00 42.05 2.77
7171 10688 2.045926 CACCAAAGAGGCGGAGGG 60.046 66.667 0.00 0.00 43.14 4.30
7172 10689 3.330720 ACCAAAGAGGCGGAGGGG 61.331 66.667 0.00 0.00 43.14 4.79
7173 10690 3.009115 CCAAAGAGGCGGAGGGGA 61.009 66.667 0.00 0.00 0.00 4.81
7185 10702 3.011517 AGGGGAAGGCGCACATCT 61.012 61.111 10.83 0.00 0.00 2.90
7283 10801 1.836802 GGAGCACTCAGATTTCTCCCT 59.163 52.381 0.00 0.00 37.85 4.20
7294 10812 6.070656 TCAGATTTCTCCCTGAAACAAACAT 58.929 36.000 0.00 0.00 46.08 2.71
7378 10896 5.771666 TCAATTCTTGATCAGCAAAGGAGTT 59.228 36.000 0.00 0.00 35.74 3.01
7380 10898 3.329386 TCTTGATCAGCAAAGGAGTTCG 58.671 45.455 0.00 0.00 35.74 3.95
7418 10936 1.952193 CAGGATCACACACACACACA 58.048 50.000 0.00 0.00 0.00 3.72
7419 10937 1.599071 CAGGATCACACACACACACAC 59.401 52.381 0.00 0.00 0.00 3.82
7420 10938 1.209261 AGGATCACACACACACACACA 59.791 47.619 0.00 0.00 0.00 3.72
7421 10939 1.330521 GGATCACACACACACACACAC 59.669 52.381 0.00 0.00 0.00 3.82
7422 10940 2.006169 GATCACACACACACACACACA 58.994 47.619 0.00 0.00 0.00 3.72
7423 10941 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
7424 10942 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
7425 10943 0.958382 ACACACACACACACACACCC 60.958 55.000 0.00 0.00 0.00 4.61
7465 10983 5.313520 TGGTACATCAGCATGTTTGATTG 57.686 39.130 10.85 9.56 40.66 2.67
7491 11009 5.643379 ACACATATGAAAACGAAATGCCT 57.357 34.783 10.38 0.00 0.00 4.75
7512 11030 4.394795 CTGCAAACAGTACTCGTAAATGC 58.605 43.478 15.59 15.59 39.22 3.56
7519 11037 3.918591 CAGTACTCGTAAATGCGTGAGTT 59.081 43.478 0.00 0.00 41.60 3.01
7585 11103 6.128445 CGATTGCAGTAGTTGAAGAAACAGAT 60.128 38.462 0.00 0.00 41.61 2.90
7633 11151 4.020751 CAGAGGGTGAACAGATCAGAAAGA 60.021 45.833 0.00 0.00 39.19 2.52
7681 11202 4.484537 AAGCTGCAGAGTGAACATCTAT 57.515 40.909 20.43 0.00 0.00 1.98
7697 11218 4.818546 ACATCTATTGCTGCACAATCTACC 59.181 41.667 14.94 0.00 46.28 3.18
7703 11224 2.030007 TGCTGCACAATCTACCTTTTGC 60.030 45.455 0.00 0.00 0.00 3.68
7704 11225 2.855180 CTGCACAATCTACCTTTTGCG 58.145 47.619 0.00 0.00 32.49 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 340 2.589492 CGCTGTTGCCGATCGATCC 61.589 63.158 18.66 7.25 35.36 3.36
401 503 1.407434 CGTGCGTGTTCCTTACGTTA 58.593 50.000 0.00 0.00 43.09 3.18
403 505 2.305127 GCGTGCGTGTTCCTTACGT 61.305 57.895 0.00 0.00 43.09 3.57
406 508 1.731613 CTCGCGTGCGTGTTCCTTA 60.732 57.895 14.47 0.00 40.74 2.69
498 616 1.743321 CGCTCCTCCTGGATGTCCTC 61.743 65.000 0.00 0.00 42.29 3.71
573 703 2.481471 GGGTGCGGCTTATCTTGGC 61.481 63.158 0.00 0.00 0.00 4.52
658 788 0.690762 AGACTGGGGCACGTGTATTT 59.309 50.000 18.38 0.00 0.00 1.40
706 853 4.040461 CCTCTATATCCGGGAGCTTTTTCA 59.960 45.833 0.00 0.00 0.00 2.69
779 926 3.791973 TTGAACCATCGCACACTTTTT 57.208 38.095 0.00 0.00 0.00 1.94
780 927 3.443976 GTTTGAACCATCGCACACTTTT 58.556 40.909 0.00 0.00 0.00 2.27
781 928 3.078594 GTTTGAACCATCGCACACTTT 57.921 42.857 0.00 0.00 0.00 2.66
782 929 2.774439 GTTTGAACCATCGCACACTT 57.226 45.000 0.00 0.00 0.00 3.16
794 941 1.269051 CCGCACTTTCCTGGTTTGAAC 60.269 52.381 0.00 0.00 0.00 3.18
795 942 1.028905 CCGCACTTTCCTGGTTTGAA 58.971 50.000 0.00 0.00 0.00 2.69
796 943 1.452145 GCCGCACTTTCCTGGTTTGA 61.452 55.000 0.00 0.00 0.00 2.69
797 944 1.007387 GCCGCACTTTCCTGGTTTG 60.007 57.895 0.00 0.00 0.00 2.93
798 945 0.109723 TAGCCGCACTTTCCTGGTTT 59.890 50.000 0.00 0.00 0.00 3.27
799 946 0.321653 CTAGCCGCACTTTCCTGGTT 60.322 55.000 0.00 0.00 0.00 3.67
800 947 1.296715 CTAGCCGCACTTTCCTGGT 59.703 57.895 0.00 0.00 0.00 4.00
801 948 1.450312 CCTAGCCGCACTTTCCTGG 60.450 63.158 0.00 0.00 0.00 4.45
802 949 1.021390 CACCTAGCCGCACTTTCCTG 61.021 60.000 0.00 0.00 0.00 3.86
803 950 1.296715 CACCTAGCCGCACTTTCCT 59.703 57.895 0.00 0.00 0.00 3.36
804 951 1.745489 CCACCTAGCCGCACTTTCC 60.745 63.158 0.00 0.00 0.00 3.13
805 952 1.003718 ACCACCTAGCCGCACTTTC 60.004 57.895 0.00 0.00 0.00 2.62
806 953 1.003718 GACCACCTAGCCGCACTTT 60.004 57.895 0.00 0.00 0.00 2.66
807 954 2.663196 GACCACCTAGCCGCACTT 59.337 61.111 0.00 0.00 0.00 3.16
808 955 3.391382 GGACCACCTAGCCGCACT 61.391 66.667 0.00 0.00 0.00 4.40
809 956 4.468689 GGGACCACCTAGCCGCAC 62.469 72.222 0.00 0.00 35.85 5.34
844 991 2.742116 CCACCCTACCACCATCCCG 61.742 68.421 0.00 0.00 0.00 5.14
848 995 1.928567 CACCCCACCCTACCACCAT 60.929 63.158 0.00 0.00 0.00 3.55
892 1039 1.475682 GTACGAAGGGACTACTGGGTG 59.524 57.143 0.00 0.00 38.49 4.61
905 1052 7.749570 GCACTGGTATATGTATACTGTACGAAG 59.250 40.741 4.17 7.98 38.79 3.79
908 1055 6.072342 TGGCACTGGTATATGTATACTGTACG 60.072 42.308 4.17 0.00 38.79 3.67
919 1066 2.260844 CCCACTGGCACTGGTATATG 57.739 55.000 11.53 0.00 0.00 1.78
950 1097 1.846648 GACGCAATATGCCGACTCG 59.153 57.895 2.69 0.00 41.12 4.18
951 1098 0.870307 ACGACGCAATATGCCGACTC 60.870 55.000 7.75 0.00 41.12 3.36
952 1099 0.459585 AACGACGCAATATGCCGACT 60.460 50.000 7.75 0.00 41.12 4.18
953 1100 0.043310 GAACGACGCAATATGCCGAC 60.043 55.000 7.75 0.00 41.12 4.79
954 1101 1.149361 GGAACGACGCAATATGCCGA 61.149 55.000 7.75 0.00 41.12 5.54
1180 1346 2.930385 ATCCTGCATTCGCACGGGAG 62.930 60.000 0.00 0.00 43.52 4.30
1511 1677 6.653989 ACATCAGGTAGGTAGGAAAATTGAG 58.346 40.000 0.00 0.00 0.00 3.02
1544 1720 6.018994 ACAACAACACGTAGAACAATCTCTTC 60.019 38.462 0.00 0.00 37.10 2.87
1619 1798 3.536570 GATGCTTTCTCCCTTACCAGTC 58.463 50.000 0.00 0.00 0.00 3.51
1703 1882 1.604378 CCGATGGGAAGCAAGTCCT 59.396 57.895 0.00 0.00 37.85 3.85
1704 1883 4.225497 CCGATGGGAAGCAAGTCC 57.775 61.111 0.00 0.00 36.90 3.85
2016 2423 5.391312 AAAGGCAAGGAATATGTGTGAAC 57.609 39.130 0.00 0.00 0.00 3.18
2044 2451 0.401738 CTGGGGTTGAAGAAGGCAGA 59.598 55.000 0.00 0.00 0.00 4.26
2067 2474 2.364632 TGCCAAGATGTTCATTACCGG 58.635 47.619 0.00 0.00 0.00 5.28
2072 2479 4.020928 TGCTTTCATGCCAAGATGTTCATT 60.021 37.500 8.29 0.00 0.00 2.57
2150 2557 4.214971 CCTCAGAGTTCAAACCTGTCATTG 59.785 45.833 0.00 0.00 32.55 2.82
2253 2660 8.078596 GGAACAGCAGAAAAATGTATATCATCC 58.921 37.037 0.00 0.00 35.48 3.51
2400 2821 5.122707 TGTGGATTAATTACCTGCCATCA 57.877 39.130 0.00 0.00 0.00 3.07
2418 2839 1.334869 GAAAGCTGGTCACAACTGTGG 59.665 52.381 9.87 0.00 45.65 4.17
2449 2870 3.316308 AGTGTGACTGAAGTTCAATTGGC 59.684 43.478 7.06 0.00 0.00 4.52
2453 2874 6.150976 TGTGAAAAGTGTGACTGAAGTTCAAT 59.849 34.615 7.06 0.00 0.00 2.57
2467 2888 5.205056 TCCTAAAACCCATGTGAAAAGTGT 58.795 37.500 0.00 0.00 0.00 3.55
2497 2920 8.517323 AGAGATATAAGGAATCAAAGTGGGAT 57.483 34.615 0.00 0.00 0.00 3.85
2570 2997 3.141398 CTGTTCAGTAAGAGCAGCCAAA 58.859 45.455 0.00 0.00 46.37 3.28
2623 3396 6.441088 AAGATGAAAAGTAGAGGGTCAAGT 57.559 37.500 0.00 0.00 0.00 3.16
2624 3397 8.314751 TCTTAAGATGAAAAGTAGAGGGTCAAG 58.685 37.037 0.00 0.00 0.00 3.02
2649 3422 7.148523 CCACCCTACATTCTTAAACGTAACTTC 60.149 40.741 0.00 0.00 0.00 3.01
2764 3537 3.806949 AGAACAACCCTTGATGCCTTA 57.193 42.857 0.00 0.00 0.00 2.69
2776 3564 6.401367 GCATTGATAATGTGCAAAGAACAACC 60.401 38.462 0.00 0.00 41.01 3.77
2911 3704 7.764443 AGTGTAGATCTTTTACGCATAACATGT 59.236 33.333 0.00 0.00 34.73 3.21
3002 3799 0.253160 AGGCATCAGGTACCCAGGAA 60.253 55.000 8.74 0.00 0.00 3.36
3003 3800 0.691078 GAGGCATCAGGTACCCAGGA 60.691 60.000 8.74 4.51 0.00 3.86
3095 3982 4.638304 TCACTGTTTTTAGTAGGACCTGC 58.362 43.478 3.53 1.91 0.00 4.85
3195 4082 7.428826 ACTTAATCCTGAAAAGAGTTTTGCAG 58.571 34.615 1.74 1.74 45.81 4.41
3196 4083 7.346751 ACTTAATCCTGAAAAGAGTTTTGCA 57.653 32.000 0.00 0.00 31.94 4.08
3197 4084 9.914131 AATACTTAATCCTGAAAAGAGTTTTGC 57.086 29.630 0.00 0.00 31.94 3.68
3225 4178 5.406175 CGAATGCAGGTGTTCAATGAATTTT 59.594 36.000 0.00 0.00 0.00 1.82
3289 4242 9.099454 GTTCTCTAACAATGAACCATACTAAGG 57.901 37.037 0.00 0.00 35.41 2.69
3290 4243 9.653287 TGTTCTCTAACAATGAACCATACTAAG 57.347 33.333 0.00 0.00 42.60 2.18
3499 4475 3.386768 TCTCTGACAAGTGGCAACTAC 57.613 47.619 0.00 0.00 34.77 2.73
3506 4482 5.049818 GTGATGAACTTTCTCTGACAAGTGG 60.050 44.000 0.00 0.00 33.38 4.00
3522 4498 7.815068 AGCAGAATATTACTATCGGTGATGAAC 59.185 37.037 0.00 0.00 0.00 3.18
3524 4500 7.468141 AGCAGAATATTACTATCGGTGATGA 57.532 36.000 0.00 0.00 0.00 2.92
3548 4524 5.973899 TGCTGAGTTATAAAACATGGCAA 57.026 34.783 0.00 0.00 38.12 4.52
3577 4553 5.773575 AGGTACAACGACAGCAGATATATG 58.226 41.667 0.00 0.00 0.00 1.78
3650 4656 2.894763 AAGCAGCTGACAAATGCAAA 57.105 40.000 20.43 0.00 42.45 3.68
3681 4687 5.120053 GCAACTATTGTGGGCATAAAACAAC 59.880 40.000 0.00 0.00 36.69 3.32
3746 4756 9.507329 CCAGCTAGGTGTATTATATGATTTGTT 57.493 33.333 19.98 0.00 0.00 2.83
3769 4779 2.086094 TGAGCATGTGCATGTAACCAG 58.914 47.619 12.96 0.00 45.16 4.00
3795 4805 3.169908 TGTTGTGCTAGATCTGTACCCA 58.830 45.455 5.18 2.92 0.00 4.51
3796 4806 3.887621 TGTTGTGCTAGATCTGTACCC 57.112 47.619 5.18 0.58 0.00 3.69
3806 4816 1.731424 GCTGCTGCATTGTTGTGCTAG 60.731 52.381 11.11 0.00 45.27 3.42
3813 4823 3.508793 AGTTTGATAGCTGCTGCATTGTT 59.491 39.130 18.42 0.00 42.74 2.83
3837 4847 3.887741 TGATGATGTGCAAAGAACAACG 58.112 40.909 0.00 0.00 0.00 4.10
3850 4862 3.053395 AGGTAACCAGGCATTGATGATGT 60.053 43.478 0.00 0.00 35.96 3.06
3854 4866 1.406539 GCAGGTAACCAGGCATTGATG 59.593 52.381 0.00 0.00 37.17 3.07
3867 4879 5.705441 CCAGTTAGAAAATGACAGCAGGTAA 59.295 40.000 0.00 0.00 0.00 2.85
3874 4886 6.483307 TGAGTTCACCAGTTAGAAAATGACAG 59.517 38.462 0.00 0.00 0.00 3.51
3907 4919 9.688091 TGGGCATTTCTAAAGTACAATTACATA 57.312 29.630 0.00 0.00 0.00 2.29
3908 4920 8.588290 TGGGCATTTCTAAAGTACAATTACAT 57.412 30.769 0.00 0.00 0.00 2.29
3912 4924 9.474313 TCTAATGGGCATTTCTAAAGTACAATT 57.526 29.630 0.00 0.00 32.50 2.32
3913 4925 9.474313 TTCTAATGGGCATTTCTAAAGTACAAT 57.526 29.630 0.00 0.00 32.50 2.71
3914 4926 8.871629 TTCTAATGGGCATTTCTAAAGTACAA 57.128 30.769 0.00 0.00 32.50 2.41
3916 4928 9.736023 CATTTCTAATGGGCATTTCTAAAGTAC 57.264 33.333 0.00 0.00 32.50 2.73
3917 4929 8.413229 GCATTTCTAATGGGCATTTCTAAAGTA 58.587 33.333 1.99 0.00 32.50 2.24
3918 4930 7.093377 TGCATTTCTAATGGGCATTTCTAAAGT 60.093 33.333 1.99 0.00 32.50 2.66
3919 4931 7.223387 GTGCATTTCTAATGGGCATTTCTAAAG 59.777 37.037 0.00 0.00 36.79 1.85
3920 4932 7.041107 GTGCATTTCTAATGGGCATTTCTAAA 58.959 34.615 0.00 0.00 36.79 1.85
3921 4933 6.154192 TGTGCATTTCTAATGGGCATTTCTAA 59.846 34.615 0.00 0.00 36.79 2.10
3922 4934 5.655974 TGTGCATTTCTAATGGGCATTTCTA 59.344 36.000 0.00 0.00 36.79 2.10
3923 4935 4.467082 TGTGCATTTCTAATGGGCATTTCT 59.533 37.500 0.00 0.00 36.79 2.52
3924 4936 4.757594 TGTGCATTTCTAATGGGCATTTC 58.242 39.130 0.00 0.00 36.79 2.17
3925 4937 4.822685 TGTGCATTTCTAATGGGCATTT 57.177 36.364 0.00 0.00 36.79 2.32
3926 4938 4.822685 TTGTGCATTTCTAATGGGCATT 57.177 36.364 0.00 0.00 36.79 3.56
3927 4939 4.822685 TTTGTGCATTTCTAATGGGCAT 57.177 36.364 0.00 0.00 36.79 4.40
3928 4940 4.020396 ACATTTGTGCATTTCTAATGGGCA 60.020 37.500 12.24 0.00 34.30 5.36
3929 4941 4.330620 CACATTTGTGCATTTCTAATGGGC 59.669 41.667 12.24 0.00 39.39 5.36
3944 4956 1.549203 CCCCTTGCTAGCACATTTGT 58.451 50.000 19.17 0.00 0.00 2.83
3968 4980 8.961294 AACTACTACTACTATCAGTGGTGTAG 57.039 38.462 18.93 18.93 40.28 2.74
3976 4988 8.952278 GGATCCATGAACTACTACTACTATCAG 58.048 40.741 6.95 0.00 0.00 2.90
3977 4989 8.445588 TGGATCCATGAACTACTACTACTATCA 58.554 37.037 11.44 0.00 0.00 2.15
3978 4990 8.865420 TGGATCCATGAACTACTACTACTATC 57.135 38.462 11.44 0.00 0.00 2.08
3997 5009 3.159472 TGGCATAGCATTTCATGGATCC 58.841 45.455 4.20 4.20 0.00 3.36
4001 5013 6.751157 TCTTTTATGGCATAGCATTTCATGG 58.249 36.000 7.35 0.00 0.00 3.66
4002 5014 8.304596 AGATCTTTTATGGCATAGCATTTCATG 58.695 33.333 7.35 0.00 0.00 3.07
4007 5019 5.479375 CCCAGATCTTTTATGGCATAGCATT 59.521 40.000 7.35 0.00 32.46 3.56
4009 5021 4.401022 CCCAGATCTTTTATGGCATAGCA 58.599 43.478 7.35 0.00 32.46 3.49
4010 5022 3.192212 GCCCAGATCTTTTATGGCATAGC 59.808 47.826 7.35 0.08 38.73 2.97
4029 5041 0.034380 GGGGAAGGTGTTTCTAGCCC 60.034 60.000 0.00 0.00 36.03 5.19
4035 5047 2.820197 GTTGATCAGGGGAAGGTGTTTC 59.180 50.000 0.00 0.00 34.93 2.78
4041 5053 0.107654 GTCCGTTGATCAGGGGAAGG 60.108 60.000 15.93 4.84 0.00 3.46
4045 5057 0.178068 AATCGTCCGTTGATCAGGGG 59.822 55.000 13.22 10.52 0.00 4.79
4046 5058 2.100916 ACTAATCGTCCGTTGATCAGGG 59.899 50.000 8.25 8.25 0.00 4.45
4047 5059 3.438297 ACTAATCGTCCGTTGATCAGG 57.562 47.619 0.00 0.00 0.00 3.86
4048 5060 4.673441 AGAACTAATCGTCCGTTGATCAG 58.327 43.478 0.00 0.00 0.00 2.90
4050 5062 4.735822 CAGAGAACTAATCGTCCGTTGATC 59.264 45.833 0.00 0.00 0.00 2.92
4051 5063 4.440250 CCAGAGAACTAATCGTCCGTTGAT 60.440 45.833 0.00 0.00 0.00 2.57
4052 5064 3.119602 CCAGAGAACTAATCGTCCGTTGA 60.120 47.826 0.00 0.00 0.00 3.18
4053 5065 3.119602 TCCAGAGAACTAATCGTCCGTTG 60.120 47.826 0.00 0.00 0.00 4.10
4054 5066 3.087031 TCCAGAGAACTAATCGTCCGTT 58.913 45.455 0.00 0.00 0.00 4.44
4055 5067 2.422832 GTCCAGAGAACTAATCGTCCGT 59.577 50.000 0.00 0.00 0.00 4.69
4056 5068 2.223525 GGTCCAGAGAACTAATCGTCCG 60.224 54.545 0.00 0.00 0.00 4.79
4057 5069 2.101082 GGGTCCAGAGAACTAATCGTCC 59.899 54.545 0.00 0.00 0.00 4.79
4058 5070 2.223525 CGGGTCCAGAGAACTAATCGTC 60.224 54.545 0.00 0.00 0.00 4.20
4059 5071 1.749634 CGGGTCCAGAGAACTAATCGT 59.250 52.381 0.00 0.00 0.00 3.73
4060 5072 1.536284 GCGGGTCCAGAGAACTAATCG 60.536 57.143 0.00 0.00 0.00 3.34
4061 5073 1.757699 AGCGGGTCCAGAGAACTAATC 59.242 52.381 0.00 0.00 0.00 1.75
4062 5074 1.757699 GAGCGGGTCCAGAGAACTAAT 59.242 52.381 0.00 0.00 0.00 1.73
4063 5075 1.183549 GAGCGGGTCCAGAGAACTAA 58.816 55.000 0.00 0.00 0.00 2.24
4064 5076 0.683504 GGAGCGGGTCCAGAGAACTA 60.684 60.000 20.82 0.00 46.10 2.24
4065 5077 1.985116 GGAGCGGGTCCAGAGAACT 60.985 63.158 20.82 0.00 46.10 3.01
4066 5078 2.579738 GGAGCGGGTCCAGAGAAC 59.420 66.667 20.82 0.00 46.10 3.01
4085 5097 4.484872 GGCTAGGGTTGCGGGGAC 62.485 72.222 0.00 0.00 0.00 4.46
5421 6487 1.611491 ACAACGGCGGATCAACAAAAT 59.389 42.857 13.24 0.00 0.00 1.82
5582 6648 5.491070 GAAATGGAAAATTCAAGGGGAAGG 58.509 41.667 0.00 0.00 39.30 3.46
5584 6650 4.910304 TGGAAATGGAAAATTCAAGGGGAA 59.090 37.500 0.00 0.00 40.46 3.97
5588 6654 7.595875 GCAAAAATGGAAATGGAAAATTCAAGG 59.404 33.333 0.00 0.00 0.00 3.61
5589 6655 8.354426 AGCAAAAATGGAAATGGAAAATTCAAG 58.646 29.630 0.00 0.00 0.00 3.02
5590 6656 8.235359 AGCAAAAATGGAAATGGAAAATTCAA 57.765 26.923 0.00 0.00 0.00 2.69
5591 6657 7.820578 AGCAAAAATGGAAATGGAAAATTCA 57.179 28.000 0.00 0.00 0.00 2.57
5592 6658 8.351461 TGAAGCAAAAATGGAAATGGAAAATTC 58.649 29.630 0.00 0.00 0.00 2.17
5593 6659 8.235359 TGAAGCAAAAATGGAAATGGAAAATT 57.765 26.923 0.00 0.00 0.00 1.82
5594 6660 7.820578 TGAAGCAAAAATGGAAATGGAAAAT 57.179 28.000 0.00 0.00 0.00 1.82
5595 6661 7.284944 ACATGAAGCAAAAATGGAAATGGAAAA 59.715 29.630 0.00 0.00 0.00 2.29
5596 6662 6.771749 ACATGAAGCAAAAATGGAAATGGAAA 59.228 30.769 0.00 0.00 0.00 3.13
5597 6663 6.297582 ACATGAAGCAAAAATGGAAATGGAA 58.702 32.000 0.00 0.00 0.00 3.53
5598 6664 5.867330 ACATGAAGCAAAAATGGAAATGGA 58.133 33.333 0.00 0.00 0.00 3.41
5599 6665 6.375377 CAACATGAAGCAAAAATGGAAATGG 58.625 36.000 0.00 0.00 0.00 3.16
5600 6666 5.854338 GCAACATGAAGCAAAAATGGAAATG 59.146 36.000 0.00 0.00 0.00 2.32
5601 6667 5.531659 TGCAACATGAAGCAAAAATGGAAAT 59.468 32.000 13.01 0.00 37.90 2.17
5606 6672 5.351233 ACATGCAACATGAAGCAAAAATG 57.649 34.783 17.83 14.18 44.88 2.32
5607 6673 5.297278 ACAACATGCAACATGAAGCAAAAAT 59.703 32.000 17.83 2.47 44.88 1.82
5625 6691 4.221924 GGTACCCAGGCAAAAATACAACAT 59.778 41.667 0.00 0.00 0.00 2.71
5626 6692 3.574826 GGTACCCAGGCAAAAATACAACA 59.425 43.478 0.00 0.00 0.00 3.33
5627 6693 3.830178 AGGTACCCAGGCAAAAATACAAC 59.170 43.478 8.74 0.00 0.00 3.32
5628 6694 3.829601 CAGGTACCCAGGCAAAAATACAA 59.170 43.478 8.74 0.00 0.00 2.41
5630 6696 3.692690 TCAGGTACCCAGGCAAAAATAC 58.307 45.455 8.74 0.00 0.00 1.89
5631 6697 4.277476 CATCAGGTACCCAGGCAAAAATA 58.723 43.478 8.74 0.00 0.00 1.40
5632 6698 2.990740 TCAGGTACCCAGGCAAAAAT 57.009 45.000 8.74 0.00 0.00 1.82
5650 6716 7.226918 GGGTAATTGGAACTTAGAAGTAGCATC 59.773 40.741 0.00 0.00 38.57 3.91
5655 6721 7.902941 AGGTAGGGTAATTGGAACTTAGAAGTA 59.097 37.037 0.00 0.00 38.57 2.24
5656 6722 6.734281 AGGTAGGGTAATTGGAACTTAGAAGT 59.266 38.462 0.00 0.00 42.04 3.01
5660 6726 6.309389 ACAGGTAGGGTAATTGGAACTTAG 57.691 41.667 0.00 0.00 0.00 2.18
5668 6734 3.016736 CCTGCAACAGGTAGGGTAATTG 58.983 50.000 5.43 0.00 45.82 2.32
5700 6766 0.835941 ATGGTCTGTGAGGATGGAGC 59.164 55.000 0.00 0.00 0.00 4.70
5865 6931 8.424133 GGTTCCAATGAAGATAATTAGGCAAAT 58.576 33.333 0.00 0.00 0.00 2.32
5921 6987 6.199908 CGAATGCAGGTGTTCAACAAATTTAA 59.800 34.615 0.00 0.00 0.00 1.52
6084 7159 4.263639 TGGCAGATATGATCCAAGGGATTC 60.264 45.833 0.00 0.00 43.27 2.52
6403 7525 6.034683 CGAAGACCTAGAACCGTAAAAATGAG 59.965 42.308 0.00 0.00 0.00 2.90
6418 7540 3.695060 TGGAGTTCTTAGCGAAGACCTAG 59.305 47.826 8.95 0.00 41.52 3.02
6491 7615 2.060980 CGAGGGAAGGGCTAGTGCT 61.061 63.158 0.00 0.00 39.59 4.40
6596 7720 4.643334 GCCCAAGTATTAACACCCTTTAGG 59.357 45.833 0.00 0.00 43.78 2.69
6640 7764 1.227943 TCAGCAGTTGTCAGCCACC 60.228 57.895 0.00 0.00 0.00 4.61
6642 7766 1.071987 CCTCAGCAGTTGTCAGCCA 59.928 57.895 0.00 0.00 0.00 4.75
6701 7826 7.396055 AGAAAGCCAGTTATACCAAAGCATTAA 59.604 33.333 0.00 0.00 0.00 1.40
6708 7833 9.802468 ACTGAGCAGAAAGCCAGTTATACCAAA 62.802 40.741 4.21 0.00 46.00 3.28
6802 10318 4.899352 AGTACCAGCTTCAGTTTCAGAT 57.101 40.909 0.00 0.00 0.00 2.90
6862 10378 2.510190 CTTGAAGCAGCACAGCGAGC 62.510 60.000 0.00 0.00 40.15 5.03
6874 10390 4.404507 TTGCAACTAATCGACTTGAAGC 57.595 40.909 0.00 0.00 0.00 3.86
6904 10420 7.739444 TCCATACACCTCCTTAATGATATCCTT 59.261 37.037 0.00 0.00 0.00 3.36
6911 10427 7.567250 TCTGTAATCCATACACCTCCTTAATGA 59.433 37.037 0.00 0.00 39.60 2.57
6926 10442 5.984725 TGACGTTACCAATCTGTAATCCAT 58.015 37.500 0.00 0.00 33.58 3.41
6934 10450 6.403200 CCTTTACCATTGACGTTACCAATCTG 60.403 42.308 0.00 0.00 32.40 2.90
6938 10454 4.970711 TCCTTTACCATTGACGTTACCAA 58.029 39.130 0.00 0.00 0.00 3.67
7001 10517 4.128643 CAGGCATGAACCAAACAAAACAT 58.871 39.130 0.00 0.00 0.00 2.71
7028 10544 7.331791 ACAACCATGAAGTCTAACTAGATTCC 58.668 38.462 0.00 0.00 34.39 3.01
7073 10590 1.619432 CCTCTCCCTTGTCTGCTCTCT 60.619 57.143 0.00 0.00 0.00 3.10
7128 10645 2.202878 TCGCTTGGTAGGCATCGC 60.203 61.111 0.00 0.00 0.00 4.58
7129 10646 1.148157 CTGTCGCTTGGTAGGCATCG 61.148 60.000 0.00 0.00 0.00 3.84
7130 10647 0.811616 CCTGTCGCTTGGTAGGCATC 60.812 60.000 0.00 0.00 0.00 3.91
7131 10648 1.221840 CCTGTCGCTTGGTAGGCAT 59.778 57.895 0.00 0.00 0.00 4.40
7134 10651 2.125106 GCCCTGTCGCTTGGTAGG 60.125 66.667 0.00 0.00 0.00 3.18
7171 10688 2.045926 ACCAGATGTGCGCCTTCC 60.046 61.111 4.18 0.00 0.00 3.46
7172 10689 1.375908 TCACCAGATGTGCGCCTTC 60.376 57.895 4.18 4.29 45.03 3.46
7173 10690 1.672356 GTCACCAGATGTGCGCCTT 60.672 57.895 4.18 0.00 45.03 4.35
7178 10695 1.878775 GGCAAGTCACCAGATGTGC 59.121 57.895 0.00 0.00 45.03 4.57
7185 10702 3.918253 GATGGCCGGCAAGTCACCA 62.918 63.158 30.85 15.69 34.28 4.17
7237 10754 1.073923 TCTCTCCCAAAAGAACCCAGC 59.926 52.381 0.00 0.00 0.00 4.85
7238 10755 2.877708 GCTCTCTCCCAAAAGAACCCAG 60.878 54.545 0.00 0.00 0.00 4.45
7311 10829 8.163408 TCGATTCCAGGAATGAACCATTAATAT 58.837 33.333 20.21 0.00 33.90 1.28
7378 10896 5.222079 TGCTTATGTTTATATGGGAGCGA 57.778 39.130 0.00 0.00 0.00 4.93
7380 10898 5.560724 TCCTGCTTATGTTTATATGGGAGC 58.439 41.667 0.00 0.00 0.00 4.70
7418 10936 1.133199 ACCAACATCAATGGGGTGTGT 60.133 47.619 7.54 0.00 42.48 3.72
7419 10937 1.273048 CACCAACATCAATGGGGTGTG 59.727 52.381 19.75 8.12 44.92 3.82
7420 10938 1.631405 CACCAACATCAATGGGGTGT 58.369 50.000 19.75 0.00 44.92 4.16
7424 10942 3.181456 ACCAAAACACCAACATCAATGGG 60.181 43.478 0.00 0.00 42.48 4.00
7425 10943 4.070630 ACCAAAACACCAACATCAATGG 57.929 40.909 0.00 0.00 43.84 3.16
7465 10983 8.342634 AGGCATTTCGTTTTCATATGTGTATAC 58.657 33.333 1.90 0.00 0.00 1.47
7482 11000 2.226437 AGTACTGTTTGCAGGCATTTCG 59.774 45.455 0.00 0.00 46.62 3.46
7491 11009 3.120820 CGCATTTACGAGTACTGTTTGCA 60.121 43.478 0.00 0.00 34.06 4.08
7512 11030 6.792250 GTCATACAATCTTGAACAAACTCACG 59.208 38.462 0.00 0.00 0.00 4.35
7519 11037 7.445121 AGTCTCAGTCATACAATCTTGAACAA 58.555 34.615 0.00 0.00 0.00 2.83
7585 11103 1.140052 TGAGAGTTGCTTTCGGTTCCA 59.860 47.619 0.00 0.00 0.00 3.53
7660 11181 2.855209 AGATGTTCACTCTGCAGCTT 57.145 45.000 9.47 0.00 0.00 3.74
7681 11202 3.552684 GCAAAAGGTAGATTGTGCAGCAA 60.553 43.478 0.00 4.56 41.89 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.