Multiple sequence alignment - TraesCS2D01G447900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G447900 chr2D 100.000 3197 0 0 1 3197 557683059 557686255 0.000000e+00 5904.0
1 TraesCS2D01G447900 chr2D 86.885 244 20 5 3 246 557666399 557666630 2.450000e-66 263.0
2 TraesCS2D01G447900 chr2D 94.792 96 4 1 3102 3197 492993702 492993796 7.150000e-32 148.0
3 TraesCS2D01G447900 chr2D 93.617 94 5 1 3104 3197 390401749 390401841 4.300000e-29 139.0
4 TraesCS2D01G447900 chr2A 91.031 2163 101 33 378 2491 698091985 698094103 0.000000e+00 2833.0
5 TraesCS2D01G447900 chr2A 90.842 273 14 6 3 271 698091669 698091934 3.920000e-94 355.0
6 TraesCS2D01G447900 chr2A 89.189 222 16 6 2900 3115 698099882 698100101 1.460000e-68 270.0
7 TraesCS2D01G447900 chr2A 84.615 208 24 4 3 210 698083552 698083751 1.940000e-47 200.0
8 TraesCS2D01G447900 chr2A 91.837 49 3 1 308 356 698091940 698091987 2.060000e-07 67.6
9 TraesCS2D01G447900 chr2B 92.300 2000 91 26 318 2293 665857525 665859485 0.000000e+00 2782.0
10 TraesCS2D01G447900 chr2B 84.921 630 60 25 2489 3102 665859685 665860295 3.530000e-169 604.0
11 TraesCS2D01G447900 chr2B 95.175 228 11 0 3 230 665857189 665857416 8.430000e-96 361.0
12 TraesCS2D01G447900 chr6D 84.533 653 82 11 1028 1669 354369085 354369729 2.090000e-176 628.0
13 TraesCS2D01G447900 chr6D 95.833 96 3 1 3102 3197 143373174 143373080 1.540000e-33 154.0
14 TraesCS2D01G447900 chr6D 94.681 94 4 1 3104 3197 26354498 26354590 9.240000e-31 145.0
15 TraesCS2D01G447900 chr6A 84.178 651 88 8 1028 1669 487771312 487770668 4.530000e-173 617.0
16 TraesCS2D01G447900 chr6B 83.739 658 81 15 1028 1669 523881487 523880840 1.640000e-167 599.0
17 TraesCS2D01G447900 chr1D 94.792 96 4 1 3102 3197 450755687 450755593 7.150000e-32 148.0
18 TraesCS2D01G447900 chr7D 93.617 94 5 1 3102 3195 385711729 385711637 4.300000e-29 139.0
19 TraesCS2D01G447900 chr7D 93.617 94 5 1 3104 3197 429979515 429979607 4.300000e-29 139.0
20 TraesCS2D01G447900 chr5D 93.617 94 4 2 3104 3197 479573388 479573479 4.300000e-29 139.0
21 TraesCS2D01G447900 chr4B 92.708 96 6 1 3102 3197 481630269 481630363 1.550000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G447900 chr2D 557683059 557686255 3196 False 5904.0 5904 100.000000 1 3197 1 chr2D.!!$F4 3196
1 TraesCS2D01G447900 chr2A 698091669 698094103 2434 False 1085.2 2833 91.236667 3 2491 3 chr2A.!!$F3 2488
2 TraesCS2D01G447900 chr2B 665857189 665860295 3106 False 1249.0 2782 90.798667 3 3102 3 chr2B.!!$F1 3099
3 TraesCS2D01G447900 chr6D 354369085 354369729 644 False 628.0 628 84.533000 1028 1669 1 chr6D.!!$F2 641
4 TraesCS2D01G447900 chr6A 487770668 487771312 644 True 617.0 617 84.178000 1028 1669 1 chr6A.!!$R1 641
5 TraesCS2D01G447900 chr6B 523880840 523881487 647 True 599.0 599 83.739000 1028 1669 1 chr6B.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 355 0.038166 TCACCTTGTCATTCCAGGGC 59.962 55.0 0.0 0.0 35.08 5.19 F
905 1010 0.106708 TGAGTGAGTGAGGTGGTTGC 59.893 55.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1913 0.596083 CGTCTCCTGATCATCACGGC 60.596 60.0 0.0 0.0 0.0 5.68 R
2465 2641 0.038251 TGAGCCTGTTACTGCACTCG 60.038 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 64 1.614903 TCGTCTCCCGTTGCTTAAAGA 59.385 47.619 0.00 0.00 37.94 2.52
62 67 3.254892 GTCTCCCGTTGCTTAAAGAGAG 58.745 50.000 0.00 0.00 31.39 3.20
149 154 4.096382 TGAAAGCCACTTCTTTGACAGTTC 59.904 41.667 0.00 0.00 36.50 3.01
178 183 4.276926 GCTCTGAATGCCACCCTTAATAAG 59.723 45.833 0.00 0.00 0.00 1.73
194 199 6.531948 CCTTAATAAGTCTCTTTGGTCAGTCG 59.468 42.308 0.00 0.00 0.00 4.18
210 215 4.002982 TCAGTCGGATCACTTTGGAATTG 58.997 43.478 0.00 0.00 0.00 2.32
230 235 2.291153 TGGAGCAGGCTTTAGCTTTCAT 60.291 45.455 0.00 0.00 42.04 2.57
231 236 2.757314 GGAGCAGGCTTTAGCTTTCATT 59.243 45.455 0.00 0.00 42.04 2.57
232 237 3.181492 GGAGCAGGCTTTAGCTTTCATTC 60.181 47.826 0.00 0.00 42.04 2.67
233 238 3.424703 AGCAGGCTTTAGCTTTCATTCA 58.575 40.909 0.00 0.00 38.01 2.57
234 239 3.442977 AGCAGGCTTTAGCTTTCATTCAG 59.557 43.478 0.00 0.00 38.01 3.02
246 251 5.048224 AGCTTTCATTCAGACACCAAATCAG 60.048 40.000 0.00 0.00 0.00 2.90
247 252 5.278660 GCTTTCATTCAGACACCAAATCAGT 60.279 40.000 0.00 0.00 0.00 3.41
248 253 6.713762 TTTCATTCAGACACCAAATCAGTT 57.286 33.333 0.00 0.00 0.00 3.16
251 256 6.295249 TCATTCAGACACCAAATCAGTTGTA 58.705 36.000 0.00 0.00 35.23 2.41
255 260 6.791303 TCAGACACCAAATCAGTTGTAAAAC 58.209 36.000 0.00 0.00 35.23 2.43
271 335 7.707035 AGTTGTAAAACATATTTGAAAACCGCA 59.293 29.630 0.00 0.00 0.00 5.69
272 336 8.491950 GTTGTAAAACATATTTGAAAACCGCAT 58.508 29.630 0.00 0.00 0.00 4.73
273 337 8.233692 TGTAAAACATATTTGAAAACCGCATC 57.766 30.769 0.00 0.00 0.00 3.91
274 338 7.867909 TGTAAAACATATTTGAAAACCGCATCA 59.132 29.630 0.00 0.00 0.00 3.07
275 339 6.704512 AAACATATTTGAAAACCGCATCAC 57.295 33.333 0.00 0.00 0.00 3.06
276 340 4.743493 ACATATTTGAAAACCGCATCACC 58.257 39.130 0.00 0.00 0.00 4.02
277 341 4.462483 ACATATTTGAAAACCGCATCACCT 59.538 37.500 0.00 0.00 0.00 4.00
278 342 5.047377 ACATATTTGAAAACCGCATCACCTT 60.047 36.000 0.00 0.00 0.00 3.50
279 343 2.791383 TTGAAAACCGCATCACCTTG 57.209 45.000 0.00 0.00 0.00 3.61
280 344 1.686355 TGAAAACCGCATCACCTTGT 58.314 45.000 0.00 0.00 0.00 3.16
281 345 1.606668 TGAAAACCGCATCACCTTGTC 59.393 47.619 0.00 0.00 0.00 3.18
282 346 1.606668 GAAAACCGCATCACCTTGTCA 59.393 47.619 0.00 0.00 0.00 3.58
283 347 1.909700 AAACCGCATCACCTTGTCAT 58.090 45.000 0.00 0.00 0.00 3.06
284 348 1.909700 AACCGCATCACCTTGTCATT 58.090 45.000 0.00 0.00 0.00 2.57
285 349 1.453155 ACCGCATCACCTTGTCATTC 58.547 50.000 0.00 0.00 0.00 2.67
286 350 0.734889 CCGCATCACCTTGTCATTCC 59.265 55.000 0.00 0.00 0.00 3.01
287 351 1.452110 CGCATCACCTTGTCATTCCA 58.548 50.000 0.00 0.00 0.00 3.53
288 352 1.399440 CGCATCACCTTGTCATTCCAG 59.601 52.381 0.00 0.00 0.00 3.86
289 353 1.747355 GCATCACCTTGTCATTCCAGG 59.253 52.381 0.00 0.00 0.00 4.45
290 354 2.372264 CATCACCTTGTCATTCCAGGG 58.628 52.381 0.00 0.00 37.59 4.45
291 355 0.038166 TCACCTTGTCATTCCAGGGC 59.962 55.000 0.00 0.00 35.08 5.19
292 356 0.967380 CACCTTGTCATTCCAGGGCC 60.967 60.000 0.00 0.00 35.08 5.80
293 357 1.380380 CCTTGTCATTCCAGGGCCC 60.380 63.158 16.46 16.46 0.00 5.80
294 358 1.693640 CTTGTCATTCCAGGGCCCT 59.306 57.895 22.28 22.28 0.00 5.19
295 359 0.682209 CTTGTCATTCCAGGGCCCTG 60.682 60.000 40.71 40.71 43.26 4.45
303 367 2.286121 CAGGGCCCTGGGGAAGTA 60.286 66.667 40.24 0.00 40.17 2.24
304 368 2.042930 AGGGCCCTGGGGAAGTAG 59.957 66.667 28.05 0.00 37.50 2.57
305 369 2.042261 GGGCCCTGGGGAAGTAGA 59.958 66.667 17.04 0.00 37.50 2.59
306 370 1.618447 GGGCCCTGGGGAAGTAGAA 60.618 63.158 17.04 0.00 37.50 2.10
309 373 0.183731 GCCCTGGGGAAGTAGAATGG 59.816 60.000 16.03 0.00 37.50 3.16
313 377 3.598264 CCTGGGGAAGTAGAATGGGATA 58.402 50.000 0.00 0.00 0.00 2.59
316 380 3.916349 TGGGGAAGTAGAATGGGATATGG 59.084 47.826 0.00 0.00 0.00 2.74
356 438 6.440647 TGGGAACTATCAGTAGAAGATTGTGT 59.559 38.462 0.00 0.00 33.04 3.72
357 439 7.038302 TGGGAACTATCAGTAGAAGATTGTGTT 60.038 37.037 0.00 0.00 33.04 3.32
358 440 7.278868 GGGAACTATCAGTAGAAGATTGTGTTG 59.721 40.741 0.00 0.00 33.04 3.33
359 441 7.278868 GGAACTATCAGTAGAAGATTGTGTTGG 59.721 40.741 0.00 0.00 33.04 3.77
360 442 7.246171 ACTATCAGTAGAAGATTGTGTTGGT 57.754 36.000 0.00 0.00 31.85 3.67
361 443 7.099764 ACTATCAGTAGAAGATTGTGTTGGTG 58.900 38.462 0.00 0.00 31.85 4.17
362 444 4.641396 TCAGTAGAAGATTGTGTTGGTGG 58.359 43.478 0.00 0.00 0.00 4.61
363 445 3.753272 CAGTAGAAGATTGTGTTGGTGGG 59.247 47.826 0.00 0.00 0.00 4.61
364 446 1.620822 AGAAGATTGTGTTGGTGGGC 58.379 50.000 0.00 0.00 0.00 5.36
365 447 1.145738 AGAAGATTGTGTTGGTGGGCT 59.854 47.619 0.00 0.00 0.00 5.19
366 448 1.270550 GAAGATTGTGTTGGTGGGCTG 59.729 52.381 0.00 0.00 0.00 4.85
367 449 1.181098 AGATTGTGTTGGTGGGCTGC 61.181 55.000 0.00 0.00 0.00 5.25
368 450 1.457267 ATTGTGTTGGTGGGCTGCA 60.457 52.632 0.50 0.00 0.00 4.41
369 451 1.747325 ATTGTGTTGGTGGGCTGCAC 61.747 55.000 0.50 0.00 0.00 4.57
370 452 2.519302 GTGTTGGTGGGCTGCACT 60.519 61.111 2.50 0.00 0.00 4.40
371 453 1.228124 GTGTTGGTGGGCTGCACTA 60.228 57.895 2.50 0.00 0.00 2.74
372 454 1.228124 TGTTGGTGGGCTGCACTAC 60.228 57.895 2.50 0.00 0.00 2.73
373 455 1.228124 GTTGGTGGGCTGCACTACA 60.228 57.895 2.50 0.00 0.00 2.74
374 456 1.228124 TTGGTGGGCTGCACTACAC 60.228 57.895 2.50 5.51 0.00 2.90
375 457 2.359975 GGTGGGCTGCACTACACC 60.360 66.667 15.59 15.59 45.56 4.16
376 458 2.742372 GTGGGCTGCACTACACCG 60.742 66.667 2.50 0.00 0.00 4.94
377 459 4.015406 TGGGCTGCACTACACCGG 62.015 66.667 2.50 0.00 0.00 5.28
378 460 4.016706 GGGCTGCACTACACCGGT 62.017 66.667 0.00 0.00 0.00 5.28
379 461 2.742372 GGCTGCACTACACCGGTG 60.742 66.667 32.83 32.83 37.70 4.94
418 500 7.058525 TCATGTTTCCTGCTCATCATCTATTT 58.941 34.615 0.00 0.00 0.00 1.40
447 533 2.743664 TCATACGTATATCCGGTGGACG 59.256 50.000 7.96 15.71 43.80 4.79
459 545 2.167861 GTGGACGCATTCTCCTCGC 61.168 63.158 0.00 0.00 0.00 5.03
461 547 2.586357 GACGCATTCTCCTCGCCC 60.586 66.667 0.00 0.00 0.00 6.13
476 562 4.293648 CCCTGTGACGTGTGCGGA 62.294 66.667 0.00 0.00 43.45 5.54
595 681 0.185901 AGATGCCAACAACCACCAGT 59.814 50.000 0.00 0.00 0.00 4.00
596 682 0.598065 GATGCCAACAACCACCAGTC 59.402 55.000 0.00 0.00 0.00 3.51
597 683 0.827507 ATGCCAACAACCACCAGTCC 60.828 55.000 0.00 0.00 0.00 3.85
598 684 1.454847 GCCAACAACCACCAGTCCA 60.455 57.895 0.00 0.00 0.00 4.02
599 685 1.455383 GCCAACAACCACCAGTCCAG 61.455 60.000 0.00 0.00 0.00 3.86
634 730 3.633525 TCACTTTGCTTTGCAGACAATCT 59.366 39.130 0.00 0.00 40.61 2.40
636 732 3.887716 ACTTTGCTTTGCAGACAATCTCT 59.112 39.130 0.00 0.00 40.61 3.10
638 734 3.413846 TGCTTTGCAGACAATCTCTCT 57.586 42.857 0.00 0.00 35.21 3.10
639 735 3.748083 TGCTTTGCAGACAATCTCTCTT 58.252 40.909 0.00 0.00 35.21 2.85
643 739 5.480642 TTTGCAGACAATCTCTCTTCTCT 57.519 39.130 0.00 0.00 35.21 3.10
657 753 5.640147 TCTCTTCTCTTCTCTTTCTCCAGT 58.360 41.667 0.00 0.00 0.00 4.00
658 754 5.710099 TCTCTTCTCTTCTCTTTCTCCAGTC 59.290 44.000 0.00 0.00 0.00 3.51
713 809 4.746729 CCATCATCTGATTCCGATCTCTC 58.253 47.826 0.00 0.00 33.28 3.20
802 898 1.300542 GCAGATGCTCCTACGCCTC 60.301 63.158 0.00 0.00 38.21 4.70
905 1010 0.106708 TGAGTGAGTGAGGTGGTTGC 59.893 55.000 0.00 0.00 0.00 4.17
924 1029 0.673644 CCAACACATCTGTCCCCGTC 60.674 60.000 0.00 0.00 0.00 4.79
933 1038 3.082055 GTCCCCGTCCCTTCCTCC 61.082 72.222 0.00 0.00 0.00 4.30
950 1056 2.360585 CCCCTTTTCTCCCCTGCC 59.639 66.667 0.00 0.00 0.00 4.85
1288 1411 3.706373 GCACCTTCGGCTCCCTCA 61.706 66.667 0.00 0.00 0.00 3.86
1621 1750 1.220206 CTCTGCCGCTCCAACATCT 59.780 57.895 0.00 0.00 0.00 2.90
1734 1863 5.045359 TGTTGAGATGGATGAATTGGAGAGT 60.045 40.000 0.00 0.00 0.00 3.24
1751 1880 0.174389 AGTATGTGTGAGGAGCAGCG 59.826 55.000 0.00 0.00 0.00 5.18
1807 1936 1.035923 TGATGATCAGGAGACGGAGC 58.964 55.000 0.09 0.00 41.53 4.70
1839 1968 0.468029 GAGCAGAGGAGGAGGAGGAG 60.468 65.000 0.00 0.00 0.00 3.69
1841 1970 1.943730 GCAGAGGAGGAGGAGGAGGA 61.944 65.000 0.00 0.00 0.00 3.71
1842 1971 0.185901 CAGAGGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
1843 1972 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1845 1974 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1846 1975 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1847 1976 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
1848 1977 2.693017 GAGGAGGAGGAGGAGGCA 59.307 66.667 0.00 0.00 0.00 4.75
1849 1978 1.002274 GAGGAGGAGGAGGAGGCAA 59.998 63.158 0.00 0.00 0.00 4.52
1850 1979 0.399806 GAGGAGGAGGAGGAGGCAAT 60.400 60.000 0.00 0.00 0.00 3.56
1851 1980 0.399806 AGGAGGAGGAGGAGGCAATC 60.400 60.000 0.00 0.00 0.00 2.67
1880 2009 1.135915 TGAGATCAGAGAAGAAGGCGC 59.864 52.381 0.00 0.00 0.00 6.53
1881 2010 1.408702 GAGATCAGAGAAGAAGGCGCT 59.591 52.381 7.64 0.00 0.00 5.92
2206 2354 1.139734 CAGTCGTGACGATCCTGGG 59.860 63.158 12.08 0.00 38.42 4.45
2236 2384 0.676466 TCCCGTTTCTGCGCATGATT 60.676 50.000 12.24 0.00 0.00 2.57
2245 2393 1.007734 GCGCATGATTGGATGCCAG 60.008 57.895 0.30 0.00 45.08 4.85
2306 2460 5.096169 CGTCCTGTGATAATGTCGATATCC 58.904 45.833 0.00 0.00 0.00 2.59
2309 2463 5.419155 TCCTGTGATAATGTCGATATCCCTC 59.581 44.000 0.00 0.00 0.00 4.30
2343 2497 2.433970 GCTCTGCTTGGGTAAGATCTCT 59.566 50.000 0.00 0.00 35.92 3.10
2345 2499 4.692228 CTCTGCTTGGGTAAGATCTCTTC 58.308 47.826 0.00 0.00 37.40 2.87
2351 2526 5.396213 GCTTGGGTAAGATCTCTTCTGATGT 60.396 44.000 0.00 0.00 37.40 3.06
2361 2536 5.078411 TCTCTTCTGATGTTAGTTCAGCC 57.922 43.478 0.00 0.00 40.35 4.85
2366 2541 0.739813 GATGTTAGTTCAGCCGGCGT 60.740 55.000 23.20 6.69 0.00 5.68
2373 2548 3.247056 TTCAGCCGGCGTTGGATCA 62.247 57.895 23.20 0.74 0.00 2.92
2415 2590 5.013079 TCCAAGTTCCAACTCATGACATAGT 59.987 40.000 0.00 0.00 38.57 2.12
2433 2608 0.391597 GTTTCGTCTCCTCCACCACA 59.608 55.000 0.00 0.00 0.00 4.17
2434 2609 0.679505 TTTCGTCTCCTCCACCACAG 59.320 55.000 0.00 0.00 0.00 3.66
2436 2611 0.894184 TCGTCTCCTCCACCACAGTC 60.894 60.000 0.00 0.00 0.00 3.51
2437 2612 1.878656 CGTCTCCTCCACCACAGTCC 61.879 65.000 0.00 0.00 0.00 3.85
2438 2613 0.832135 GTCTCCTCCACCACAGTCCA 60.832 60.000 0.00 0.00 0.00 4.02
2439 2614 0.117140 TCTCCTCCACCACAGTCCAT 59.883 55.000 0.00 0.00 0.00 3.41
2440 2615 0.987294 CTCCTCCACCACAGTCCATT 59.013 55.000 0.00 0.00 0.00 3.16
2441 2616 0.984230 TCCTCCACCACAGTCCATTC 59.016 55.000 0.00 0.00 0.00 2.67
2465 2641 1.337703 TCAGTGGACATGTTTTGCTGC 59.662 47.619 0.00 0.00 0.00 5.25
2503 2716 5.810074 GGCTCAAGTTTTTGTGTGTGTTTAT 59.190 36.000 0.00 0.00 35.73 1.40
2504 2717 6.237808 GGCTCAAGTTTTTGTGTGTGTTTATG 60.238 38.462 0.00 0.00 35.73 1.90
2506 2719 5.578727 TCAAGTTTTTGTGTGTGTTTATGCC 59.421 36.000 0.00 0.00 35.73 4.40
2509 2722 6.169800 AGTTTTTGTGTGTGTTTATGCCTTT 58.830 32.000 0.00 0.00 0.00 3.11
2510 2723 6.091986 AGTTTTTGTGTGTGTTTATGCCTTTG 59.908 34.615 0.00 0.00 0.00 2.77
2511 2724 3.090952 TGTGTGTGTTTATGCCTTTGC 57.909 42.857 0.00 0.00 38.26 3.68
2531 2744 3.125146 TGCAATTAGCTGTAAAGCGAGTG 59.875 43.478 0.00 3.49 45.94 3.51
2543 2756 2.386661 AGCGAGTGTGAAATCCGAAT 57.613 45.000 0.00 0.00 0.00 3.34
2548 2761 3.865164 CGAGTGTGAAATCCGAATGATCA 59.135 43.478 0.00 0.00 31.61 2.92
2554 2767 6.808212 GTGTGAAATCCGAATGATCAAATGTT 59.192 34.615 0.00 0.00 31.61 2.71
2557 2770 5.920193 AATCCGAATGATCAAATGTTGGT 57.080 34.783 0.00 0.00 31.61 3.67
2558 2771 5.920193 ATCCGAATGATCAAATGTTGGTT 57.080 34.783 0.00 0.00 0.00 3.67
2559 2772 5.309323 TCCGAATGATCAAATGTTGGTTC 57.691 39.130 0.00 0.00 0.00 3.62
2560 2773 4.764308 TCCGAATGATCAAATGTTGGTTCA 59.236 37.500 0.00 0.00 0.00 3.18
2561 2774 5.242615 TCCGAATGATCAAATGTTGGTTCAA 59.757 36.000 0.00 0.00 30.77 2.69
2562 2775 5.925397 CCGAATGATCAAATGTTGGTTCAAA 59.075 36.000 0.00 0.00 30.77 2.69
2564 2777 7.412129 CCGAATGATCAAATGTTGGTTCAAATG 60.412 37.037 0.00 0.00 30.77 2.32
2565 2778 7.116662 CGAATGATCAAATGTTGGTTCAAATGT 59.883 33.333 0.00 0.00 30.77 2.71
2567 2780 9.775854 AATGATCAAATGTTGGTTCAAATGTTA 57.224 25.926 0.00 0.00 30.77 2.41
2568 2781 8.815141 TGATCAAATGTTGGTTCAAATGTTAG 57.185 30.769 0.00 0.00 0.00 2.34
2569 2782 8.420222 TGATCAAATGTTGGTTCAAATGTTAGT 58.580 29.630 0.00 0.00 0.00 2.24
2570 2783 9.906660 GATCAAATGTTGGTTCAAATGTTAGTA 57.093 29.630 0.00 0.00 0.00 1.82
2571 2784 9.691362 ATCAAATGTTGGTTCAAATGTTAGTAC 57.309 29.630 0.00 0.00 0.00 2.73
2577 2790 7.876068 TGTTGGTTCAAATGTTAGTACTAGGAG 59.124 37.037 2.23 0.00 0.00 3.69
2580 2793 6.757478 GGTTCAAATGTTAGTACTAGGAGCTC 59.243 42.308 4.71 4.71 0.00 4.09
2581 2794 6.132791 TCAAATGTTAGTACTAGGAGCTCG 57.867 41.667 7.83 0.00 0.00 5.03
2588 2801 2.362717 AGTACTAGGAGCTCGGAATTGC 59.637 50.000 7.83 0.00 0.00 3.56
2601 2814 3.118629 TCGGAATTGCTCTCTTGCATACT 60.119 43.478 0.00 0.00 42.96 2.12
2602 2815 3.624861 CGGAATTGCTCTCTTGCATACTT 59.375 43.478 0.00 0.00 42.96 2.24
2603 2816 4.095483 CGGAATTGCTCTCTTGCATACTTT 59.905 41.667 0.00 0.00 42.96 2.66
2613 2835 5.942236 TCTCTTGCATACTTTTTGAGCTCAT 59.058 36.000 19.04 4.41 0.00 2.90
2616 2838 8.284945 TCTTGCATACTTTTTGAGCTCATATT 57.715 30.769 19.04 3.23 0.00 1.28
2619 2841 7.700505 TGCATACTTTTTGAGCTCATATTCAG 58.299 34.615 19.04 11.65 0.00 3.02
2620 2842 7.137426 GCATACTTTTTGAGCTCATATTCAGG 58.863 38.462 19.04 5.65 0.00 3.86
2621 2843 7.646314 CATACTTTTTGAGCTCATATTCAGGG 58.354 38.462 19.04 5.51 0.00 4.45
2622 2844 5.819991 ACTTTTTGAGCTCATATTCAGGGA 58.180 37.500 19.04 0.00 0.00 4.20
2623 2845 5.649831 ACTTTTTGAGCTCATATTCAGGGAC 59.350 40.000 19.04 0.00 0.00 4.46
2624 2846 4.842531 TTTGAGCTCATATTCAGGGACA 57.157 40.909 19.04 0.00 0.00 4.02
2625 2847 3.827008 TGAGCTCATATTCAGGGACAC 57.173 47.619 13.74 0.00 0.00 3.67
2626 2848 3.106827 TGAGCTCATATTCAGGGACACA 58.893 45.455 13.74 0.00 0.00 3.72
2627 2849 3.519107 TGAGCTCATATTCAGGGACACAA 59.481 43.478 13.74 0.00 0.00 3.33
2628 2850 4.164796 TGAGCTCATATTCAGGGACACAAT 59.835 41.667 13.74 0.00 0.00 2.71
2629 2851 4.712476 AGCTCATATTCAGGGACACAATC 58.288 43.478 0.00 0.00 0.00 2.67
2630 2852 4.411540 AGCTCATATTCAGGGACACAATCT 59.588 41.667 0.00 0.00 0.00 2.40
2631 2853 5.604231 AGCTCATATTCAGGGACACAATCTA 59.396 40.000 0.00 0.00 0.00 1.98
2632 2854 6.271857 AGCTCATATTCAGGGACACAATCTAT 59.728 38.462 0.00 0.00 0.00 1.98
2633 2855 7.455953 AGCTCATATTCAGGGACACAATCTATA 59.544 37.037 0.00 0.00 0.00 1.31
2634 2856 8.263640 GCTCATATTCAGGGACACAATCTATAT 58.736 37.037 0.00 0.00 0.00 0.86
2637 2859 9.948964 CATATTCAGGGACACAATCTATATTCA 57.051 33.333 0.00 0.00 0.00 2.57
2663 2885 2.230508 AGTACTGAAATTCGCGGAGACA 59.769 45.455 6.13 0.00 0.00 3.41
2679 2901 3.478509 GAGACAGGCCGAGAGATAAGTA 58.521 50.000 0.00 0.00 0.00 2.24
2696 2918 9.708222 GAGATAAGTAATATTTGCAGTGTGTTG 57.292 33.333 0.00 0.00 0.00 3.33
2723 2945 1.639298 GACGCTTGCTGTGGTCCATC 61.639 60.000 0.00 0.00 0.00 3.51
2725 2947 1.878775 GCTTGCTGTGGTCCATCAC 59.121 57.895 0.00 0.00 38.09 3.06
2749 2971 6.171921 CCATCAAGAATTAGCCTGATCCTAG 58.828 44.000 0.00 0.00 0.00 3.02
2752 2974 5.130975 TCAAGAATTAGCCTGATCCTAGCAA 59.869 40.000 0.00 0.00 0.00 3.91
2786 3009 4.318475 CGACAGTGCACGTTTTTCTATTCA 60.318 41.667 12.01 0.00 0.00 2.57
2792 3015 5.059221 GTGCACGTTTTTCTATTCAATTCGG 59.941 40.000 0.00 0.00 0.00 4.30
2801 3024 1.941325 ATTCAATTCGGCGGAGACTC 58.059 50.000 7.21 0.00 0.00 3.36
2802 3025 0.457853 TTCAATTCGGCGGAGACTCG 60.458 55.000 7.21 0.00 0.00 4.18
2818 3041 0.094216 CTCGTGATGAGTTGCTTGCG 59.906 55.000 0.00 0.00 40.03 4.85
2853 3076 4.651503 GGTCAGATCTGGGTTTGAGATAGA 59.348 45.833 22.42 0.00 29.97 1.98
2884 3110 4.856801 CCTGATTCCCCGCACCCG 62.857 72.222 0.00 0.00 0.00 5.28
2899 3126 4.347453 CCGCACCCACTTTGCAGC 62.347 66.667 0.00 0.00 40.20 5.25
2917 3144 3.648009 CAGCAAAAGGAATGGCGTTTTA 58.352 40.909 0.00 0.00 41.24 1.52
2925 3152 7.172969 AAAAGGAATGGCGTTTTAATATCGGC 61.173 38.462 11.76 11.76 41.34 5.54
2931 3158 1.659211 CGTTTTAATATCGGCCAGCGC 60.659 52.381 2.24 0.00 0.00 5.92
2976 3203 2.273557 CGGGTTTACGGACAATAGTGG 58.726 52.381 0.00 0.00 0.00 4.00
3017 3244 0.906282 AATCCCGTCCGTGGTTAGGT 60.906 55.000 0.00 0.00 0.00 3.08
3018 3245 0.906282 ATCCCGTCCGTGGTTAGGTT 60.906 55.000 0.00 0.00 0.00 3.50
3019 3246 0.251564 TCCCGTCCGTGGTTAGGTTA 60.252 55.000 0.00 0.00 0.00 2.85
3020 3247 0.174162 CCCGTCCGTGGTTAGGTTAG 59.826 60.000 0.00 0.00 0.00 2.34
3021 3248 0.174162 CCGTCCGTGGTTAGGTTAGG 59.826 60.000 0.00 0.00 0.00 2.69
3022 3249 0.459063 CGTCCGTGGTTAGGTTAGGC 60.459 60.000 0.00 0.00 0.00 3.93
3045 3278 4.619227 CCCTCCGTGGCACGTGTT 62.619 66.667 34.74 0.00 40.58 3.32
3069 3302 0.445436 GCGTTCCAGATCTGTGCTTG 59.555 55.000 21.11 5.81 0.00 4.01
3070 3303 0.445436 CGTTCCAGATCTGTGCTTGC 59.555 55.000 21.11 4.77 0.00 4.01
3080 3313 0.594796 CTGTGCTTGCGGTTTGGTTC 60.595 55.000 0.00 0.00 0.00 3.62
3084 3317 2.094752 GTGCTTGCGGTTTGGTTCATAT 60.095 45.455 0.00 0.00 0.00 1.78
3102 3335 6.982160 TCATATGGCAGAGGCAAATAATTT 57.018 33.333 2.13 0.00 42.43 1.82
3103 3336 8.359642 GTTCATATGGCAGAGGCAAATAATTTA 58.640 33.333 2.13 0.00 42.43 1.40
3104 3337 8.114331 TCATATGGCAGAGGCAAATAATTTAG 57.886 34.615 2.13 0.00 42.43 1.85
3105 3338 7.944000 TCATATGGCAGAGGCAAATAATTTAGA 59.056 33.333 2.13 0.00 42.43 2.10
3106 3339 6.645790 ATGGCAGAGGCAAATAATTTAGAG 57.354 37.500 0.00 0.00 42.43 2.43
3107 3340 4.339247 TGGCAGAGGCAAATAATTTAGAGC 59.661 41.667 0.00 0.00 43.71 4.09
3108 3341 4.339247 GGCAGAGGCAAATAATTTAGAGCA 59.661 41.667 0.00 0.00 43.71 4.26
3109 3342 5.163519 GGCAGAGGCAAATAATTTAGAGCAA 60.164 40.000 0.00 0.00 43.71 3.91
3110 3343 5.745769 GCAGAGGCAAATAATTTAGAGCAAC 59.254 40.000 0.00 0.00 40.72 4.17
3111 3344 6.405176 GCAGAGGCAAATAATTTAGAGCAACT 60.405 38.462 0.00 0.00 40.72 3.16
3112 3345 7.192232 CAGAGGCAAATAATTTAGAGCAACTC 58.808 38.462 0.00 0.00 0.00 3.01
3113 3346 7.066766 CAGAGGCAAATAATTTAGAGCAACTCT 59.933 37.037 2.23 2.23 43.83 3.24
3114 3347 8.267894 AGAGGCAAATAATTTAGAGCAACTCTA 58.732 33.333 0.16 0.16 41.50 2.43
3115 3348 8.443953 AGGCAAATAATTTAGAGCAACTCTAG 57.556 34.615 4.64 0.00 42.92 2.43
3116 3349 7.012799 AGGCAAATAATTTAGAGCAACTCTAGC 59.987 37.037 4.64 2.98 42.92 3.42
3117 3350 7.201732 GGCAAATAATTTAGAGCAACTCTAGCA 60.202 37.037 4.64 0.00 42.92 3.49
3118 3351 8.184192 GCAAATAATTTAGAGCAACTCTAGCAA 58.816 33.333 4.64 0.00 42.92 3.91
3119 3352 9.713740 CAAATAATTTAGAGCAACTCTAGCAAG 57.286 33.333 4.64 0.00 42.92 4.01
3120 3353 9.672673 AAATAATTTAGAGCAACTCTAGCAAGA 57.327 29.630 4.64 0.00 42.92 3.02
3121 3354 6.976636 AATTTAGAGCAACTCTAGCAAGAC 57.023 37.500 4.64 0.00 42.92 3.01
3122 3355 4.457834 TTAGAGCAACTCTAGCAAGACC 57.542 45.455 4.64 0.00 42.92 3.85
3123 3356 2.534990 AGAGCAACTCTAGCAAGACCT 58.465 47.619 0.00 0.00 39.28 3.85
3124 3357 2.495669 AGAGCAACTCTAGCAAGACCTC 59.504 50.000 0.00 0.00 39.28 3.85
3125 3358 1.203523 AGCAACTCTAGCAAGACCTCG 59.796 52.381 0.00 0.00 0.00 4.63
3126 3359 1.634702 CAACTCTAGCAAGACCTCGC 58.365 55.000 0.00 0.00 0.00 5.03
3127 3360 1.067565 CAACTCTAGCAAGACCTCGCA 60.068 52.381 0.00 0.00 0.00 5.10
3128 3361 1.479709 ACTCTAGCAAGACCTCGCAT 58.520 50.000 0.00 0.00 0.00 4.73
3129 3362 1.827969 ACTCTAGCAAGACCTCGCATT 59.172 47.619 0.00 0.00 0.00 3.56
3130 3363 2.234908 ACTCTAGCAAGACCTCGCATTT 59.765 45.455 0.00 0.00 0.00 2.32
3131 3364 3.265791 CTCTAGCAAGACCTCGCATTTT 58.734 45.455 0.00 0.00 0.00 1.82
3132 3365 3.002791 TCTAGCAAGACCTCGCATTTTG 58.997 45.455 0.00 0.00 0.00 2.44
3133 3366 0.242017 AGCAAGACCTCGCATTTTGC 59.758 50.000 0.00 0.00 43.23 3.68
3134 3367 0.733909 GCAAGACCTCGCATTTTGCC 60.734 55.000 0.00 0.00 41.12 4.52
3135 3368 0.454957 CAAGACCTCGCATTTTGCCG 60.455 55.000 0.00 0.00 41.12 5.69
3136 3369 0.605319 AAGACCTCGCATTTTGCCGA 60.605 50.000 0.00 0.00 41.12 5.54
3137 3370 1.134694 GACCTCGCATTTTGCCGAC 59.865 57.895 0.00 0.00 41.12 4.79
3138 3371 2.253414 GACCTCGCATTTTGCCGACC 62.253 60.000 0.00 0.00 41.12 4.79
3139 3372 2.485122 CTCGCATTTTGCCGACCC 59.515 61.111 0.00 0.00 41.12 4.46
3140 3373 3.381169 CTCGCATTTTGCCGACCCG 62.381 63.158 0.00 0.00 41.12 5.28
3141 3374 3.732892 CGCATTTTGCCGACCCGT 61.733 61.111 0.00 0.00 41.12 5.28
3142 3375 2.392181 CGCATTTTGCCGACCCGTA 61.392 57.895 0.00 0.00 41.12 4.02
3143 3376 1.877367 GCATTTTGCCGACCCGTAA 59.123 52.632 0.00 0.00 37.42 3.18
3144 3377 0.241481 GCATTTTGCCGACCCGTAAA 59.759 50.000 0.00 0.00 37.42 2.01
3145 3378 1.336056 GCATTTTGCCGACCCGTAAAA 60.336 47.619 0.00 0.00 37.42 1.52
3146 3379 2.672760 GCATTTTGCCGACCCGTAAAAT 60.673 45.455 0.00 0.00 37.42 1.82
3147 3380 2.708386 TTTTGCCGACCCGTAAAATG 57.292 45.000 0.00 0.00 0.00 2.32
3148 3381 1.606903 TTTGCCGACCCGTAAAATGT 58.393 45.000 0.00 0.00 0.00 2.71
3149 3382 0.875728 TTGCCGACCCGTAAAATGTG 59.124 50.000 0.00 0.00 0.00 3.21
3150 3383 0.250381 TGCCGACCCGTAAAATGTGT 60.250 50.000 0.00 0.00 0.00 3.72
3151 3384 0.876399 GCCGACCCGTAAAATGTGTT 59.124 50.000 0.00 0.00 0.00 3.32
3152 3385 1.267533 GCCGACCCGTAAAATGTGTTT 59.732 47.619 0.00 0.00 0.00 2.83
3153 3386 2.918968 GCCGACCCGTAAAATGTGTTTG 60.919 50.000 0.00 0.00 0.00 2.93
3154 3387 2.312348 CGACCCGTAAAATGTGTTTGC 58.688 47.619 0.00 0.00 0.00 3.68
3155 3388 2.287069 CGACCCGTAAAATGTGTTTGCA 60.287 45.455 0.00 0.00 0.00 4.08
3156 3389 3.707793 GACCCGTAAAATGTGTTTGCAA 58.292 40.909 0.00 0.00 0.00 4.08
3157 3390 3.712187 ACCCGTAAAATGTGTTTGCAAG 58.288 40.909 0.00 0.00 0.00 4.01
3158 3391 3.131400 ACCCGTAAAATGTGTTTGCAAGT 59.869 39.130 0.00 0.00 0.00 3.16
3159 3392 3.733727 CCCGTAAAATGTGTTTGCAAGTC 59.266 43.478 0.00 0.00 0.00 3.01
3160 3393 3.420576 CCGTAAAATGTGTTTGCAAGTCG 59.579 43.478 0.00 0.00 0.00 4.18
3161 3394 3.121828 CGTAAAATGTGTTTGCAAGTCGC 60.122 43.478 0.00 4.85 42.89 5.19
3181 3414 4.065110 GGGGACGATTATGCAGGC 57.935 61.111 0.00 0.00 0.00 4.85
3182 3415 1.600916 GGGGACGATTATGCAGGCC 60.601 63.158 0.00 0.00 0.00 5.19
3183 3416 1.961277 GGGACGATTATGCAGGCCG 60.961 63.158 0.00 0.00 0.00 6.13
3184 3417 1.069090 GGACGATTATGCAGGCCGA 59.931 57.895 0.00 0.00 0.00 5.54
3185 3418 0.531974 GGACGATTATGCAGGCCGAA 60.532 55.000 0.00 0.00 0.00 4.30
3186 3419 1.295792 GACGATTATGCAGGCCGAAA 58.704 50.000 0.00 0.00 0.00 3.46
3187 3420 1.668751 GACGATTATGCAGGCCGAAAA 59.331 47.619 0.00 0.00 0.00 2.29
3188 3421 2.290641 GACGATTATGCAGGCCGAAAAT 59.709 45.455 0.00 0.00 0.00 1.82
3189 3422 2.687935 ACGATTATGCAGGCCGAAAATT 59.312 40.909 0.00 0.00 0.00 1.82
3190 3423 3.044986 CGATTATGCAGGCCGAAAATTG 58.955 45.455 0.00 0.00 0.00 2.32
3191 3424 2.292103 TTATGCAGGCCGAAAATTGC 57.708 45.000 5.48 5.48 37.09 3.56
3192 3425 0.100325 TATGCAGGCCGAAAATTGCG 59.900 50.000 7.78 0.00 39.34 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.221126 GGTCTGTTTGACAGCTTTCTTCAAT 60.221 40.000 0.87 0.00 45.54 2.57
1 2 4.096382 GGTCTGTTTGACAGCTTTCTTCAA 59.904 41.667 0.87 0.00 45.54 2.69
59 64 4.601857 TCCCTAAACAATCCAAGGTTCTCT 59.398 41.667 0.00 0.00 0.00 3.10
62 67 4.918588 TCTCCCTAAACAATCCAAGGTTC 58.081 43.478 0.00 0.00 0.00 3.62
149 154 0.455633 GTGGCATTCAGAGCTTTGCG 60.456 55.000 0.00 0.00 35.95 4.85
178 183 2.231478 TGATCCGACTGACCAAAGAGAC 59.769 50.000 0.00 0.00 0.00 3.36
194 199 3.091545 TGCTCCAATTCCAAAGTGATCC 58.908 45.455 0.00 0.00 0.00 3.36
210 215 1.826385 TGAAAGCTAAAGCCTGCTCC 58.174 50.000 0.00 0.00 43.38 4.70
230 235 7.094162 TGTTTTACAACTGATTTGGTGTCTGAA 60.094 33.333 0.00 0.00 39.84 3.02
231 236 6.375736 TGTTTTACAACTGATTTGGTGTCTGA 59.624 34.615 0.00 0.00 39.84 3.27
232 237 6.559810 TGTTTTACAACTGATTTGGTGTCTG 58.440 36.000 0.00 0.00 39.84 3.51
233 238 6.767524 TGTTTTACAACTGATTTGGTGTCT 57.232 33.333 0.00 0.00 39.84 3.41
234 239 9.691362 AATATGTTTTACAACTGATTTGGTGTC 57.309 29.630 0.00 0.00 39.84 3.67
246 251 7.842484 TGCGGTTTTCAAATATGTTTTACAAC 58.158 30.769 0.00 0.00 0.00 3.32
247 252 8.594881 ATGCGGTTTTCAAATATGTTTTACAA 57.405 26.923 0.00 0.00 0.00 2.41
248 253 7.867909 TGATGCGGTTTTCAAATATGTTTTACA 59.132 29.630 0.00 0.00 0.00 2.41
251 256 6.147000 GGTGATGCGGTTTTCAAATATGTTTT 59.853 34.615 0.00 0.00 0.00 2.43
255 260 4.997565 AGGTGATGCGGTTTTCAAATATG 58.002 39.130 0.00 0.00 0.00 1.78
271 335 1.341383 GCCCTGGAATGACAAGGTGAT 60.341 52.381 0.00 0.00 0.00 3.06
272 336 0.038166 GCCCTGGAATGACAAGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
273 337 0.967380 GGCCCTGGAATGACAAGGTG 60.967 60.000 0.00 0.00 0.00 4.00
274 338 1.384191 GGCCCTGGAATGACAAGGT 59.616 57.895 0.00 0.00 0.00 3.50
275 339 1.380380 GGGCCCTGGAATGACAAGG 60.380 63.158 17.04 0.00 0.00 3.61
276 340 0.682209 CAGGGCCCTGGAATGACAAG 60.682 60.000 40.24 14.01 40.17 3.16
277 341 1.383799 CAGGGCCCTGGAATGACAA 59.616 57.895 40.24 0.00 40.17 3.18
278 342 3.089838 CAGGGCCCTGGAATGACA 58.910 61.111 40.24 0.00 40.17 3.58
286 350 2.286121 TACTTCCCCAGGGCCCTG 60.286 66.667 40.71 40.71 43.26 4.45
287 351 2.042930 CTACTTCCCCAGGGCCCT 59.957 66.667 22.28 22.28 34.68 5.19
288 352 0.994050 ATTCTACTTCCCCAGGGCCC 60.994 60.000 16.46 16.46 34.68 5.80
289 353 0.183731 CATTCTACTTCCCCAGGGCC 59.816 60.000 0.00 0.00 34.68 5.80
290 354 0.183731 CCATTCTACTTCCCCAGGGC 59.816 60.000 0.00 0.00 34.68 5.19
291 355 0.846693 CCCATTCTACTTCCCCAGGG 59.153 60.000 0.00 0.00 0.00 4.45
292 356 1.893315 TCCCATTCTACTTCCCCAGG 58.107 55.000 0.00 0.00 0.00 4.45
293 357 4.018960 CCATATCCCATTCTACTTCCCCAG 60.019 50.000 0.00 0.00 0.00 4.45
294 358 3.916349 CCATATCCCATTCTACTTCCCCA 59.084 47.826 0.00 0.00 0.00 4.96
295 359 3.916989 ACCATATCCCATTCTACTTCCCC 59.083 47.826 0.00 0.00 0.00 4.81
296 360 5.584551 AACCATATCCCATTCTACTTCCC 57.415 43.478 0.00 0.00 0.00 3.97
297 361 6.004574 GGAAACCATATCCCATTCTACTTCC 58.995 44.000 0.00 0.00 0.00 3.46
298 362 6.601332 TGGAAACCATATCCCATTCTACTTC 58.399 40.000 0.00 0.00 36.04 3.01
299 363 6.590656 TGGAAACCATATCCCATTCTACTT 57.409 37.500 0.00 0.00 36.04 2.24
300 364 6.786843 ATGGAAACCATATCCCATTCTACT 57.213 37.500 1.11 0.00 43.19 2.57
305 369 7.754091 AAAAGAATGGAAACCATATCCCATT 57.246 32.000 0.00 0.00 44.40 3.16
306 370 7.754091 AAAAAGAATGGAAACCATATCCCAT 57.246 32.000 3.64 0.00 44.40 4.00
356 438 1.228124 GTGTAGTGCAGCCCACCAA 60.228 57.895 0.00 0.00 45.83 3.67
357 439 2.429930 GTGTAGTGCAGCCCACCA 59.570 61.111 0.00 0.00 45.83 4.17
358 440 2.359975 GGTGTAGTGCAGCCCACC 60.360 66.667 11.56 11.56 45.83 4.61
359 441 2.742372 CGGTGTAGTGCAGCCCAC 60.742 66.667 4.77 0.00 45.01 4.61
360 442 4.015406 CCGGTGTAGTGCAGCCCA 62.015 66.667 4.77 0.00 42.23 5.36
361 443 4.016706 ACCGGTGTAGTGCAGCCC 62.017 66.667 6.12 0.00 42.23 5.19
362 444 2.742372 CACCGGTGTAGTGCAGCC 60.742 66.667 26.95 0.00 42.23 4.85
367 449 3.687212 TGATAATTTGCACCGGTGTAGTG 59.313 43.478 33.92 10.72 38.30 2.74
368 450 3.945346 TGATAATTTGCACCGGTGTAGT 58.055 40.909 33.92 19.82 0.00 2.73
369 451 4.335315 ACATGATAATTTGCACCGGTGTAG 59.665 41.667 33.92 17.32 0.00 2.74
370 452 4.265893 ACATGATAATTTGCACCGGTGTA 58.734 39.130 33.92 28.63 0.00 2.90
371 453 3.088532 ACATGATAATTTGCACCGGTGT 58.911 40.909 33.92 17.60 0.00 4.16
372 454 3.781079 ACATGATAATTTGCACCGGTG 57.219 42.857 30.66 30.66 0.00 4.94
373 455 3.761218 TGAACATGATAATTTGCACCGGT 59.239 39.130 0.00 0.00 0.00 5.28
374 456 4.368874 TGAACATGATAATTTGCACCGG 57.631 40.909 0.00 0.00 0.00 5.28
375 457 5.342433 ACATGAACATGATAATTTGCACCG 58.658 37.500 19.56 0.00 41.20 4.94
376 458 7.201548 GGAAACATGAACATGATAATTTGCACC 60.202 37.037 19.56 5.76 41.20 5.01
377 459 7.546667 AGGAAACATGAACATGATAATTTGCAC 59.453 33.333 19.56 4.90 41.20 4.57
378 460 7.546316 CAGGAAACATGAACATGATAATTTGCA 59.454 33.333 19.56 0.00 41.20 4.08
379 461 7.464977 GCAGGAAACATGAACATGATAATTTGC 60.465 37.037 19.56 14.00 41.20 3.68
418 500 7.085746 CACCGGATATACGTATGATTGTGTAA 58.914 38.462 18.37 0.00 0.00 2.41
431 517 0.242825 ATGCGTCCACCGGATATACG 59.757 55.000 9.46 13.56 46.53 3.06
447 533 1.817099 CACAGGGCGAGGAGAATGC 60.817 63.158 0.00 0.00 0.00 3.56
459 545 3.800685 TTCCGCACACGTCACAGGG 62.801 63.158 0.00 0.00 37.70 4.45
461 547 1.821241 CTGTTCCGCACACGTCACAG 61.821 60.000 0.00 0.00 39.58 3.66
476 562 2.261729 GTCCCTTTCCTCTCTCCTGTT 58.738 52.381 0.00 0.00 0.00 3.16
508 594 0.399806 TTTTTCTTTGCCCTGCCCCT 60.400 50.000 0.00 0.00 0.00 4.79
595 681 0.178906 TGATGGTGGACTGGACTGGA 60.179 55.000 0.00 0.00 0.00 3.86
596 682 0.036010 GTGATGGTGGACTGGACTGG 60.036 60.000 0.00 0.00 0.00 4.00
597 683 0.979665 AGTGATGGTGGACTGGACTG 59.020 55.000 0.00 0.00 0.00 3.51
598 684 1.734655 AAGTGATGGTGGACTGGACT 58.265 50.000 0.00 0.00 0.00 3.85
599 685 2.154462 CAAAGTGATGGTGGACTGGAC 58.846 52.381 0.00 0.00 0.00 4.02
634 730 5.640147 ACTGGAGAAAGAGAAGAGAAGAGA 58.360 41.667 0.00 0.00 0.00 3.10
636 732 4.770010 GGACTGGAGAAAGAGAAGAGAAGA 59.230 45.833 0.00 0.00 0.00 2.87
638 734 3.835395 GGGACTGGAGAAAGAGAAGAGAA 59.165 47.826 0.00 0.00 0.00 2.87
639 735 3.076785 AGGGACTGGAGAAAGAGAAGAGA 59.923 47.826 0.00 0.00 37.18 3.10
643 739 2.541466 GGAGGGACTGGAGAAAGAGAA 58.459 52.381 0.00 0.00 41.55 2.87
657 753 1.384082 GGGATCTTTCGGGGAGGGA 60.384 63.158 0.00 0.00 0.00 4.20
658 754 2.452937 GGGGATCTTTCGGGGAGGG 61.453 68.421 0.00 0.00 0.00 4.30
889 994 0.465460 TTGGCAACCACCTCACTCAC 60.465 55.000 0.00 0.00 30.78 3.51
890 995 0.465460 GTTGGCAACCACCTCACTCA 60.465 55.000 19.57 0.00 30.78 3.41
891 996 0.465460 TGTTGGCAACCACCTCACTC 60.465 55.000 26.31 0.00 30.78 3.51
892 997 0.751643 GTGTTGGCAACCACCTCACT 60.752 55.000 26.31 0.00 34.68 3.41
905 1010 0.673644 GACGGGGACAGATGTGTTGG 60.674 60.000 0.00 0.00 36.88 3.77
924 1029 0.626382 GAGAAAAGGGGGAGGAAGGG 59.374 60.000 0.00 0.00 0.00 3.95
933 1038 2.360585 GGCAGGGGAGAAAAGGGG 59.639 66.667 0.00 0.00 0.00 4.79
936 1042 1.866853 GCAACGGCAGGGGAGAAAAG 61.867 60.000 0.00 0.00 40.72 2.27
1170 1293 2.722201 GGAGAAGACGTGGCCGGAT 61.722 63.158 5.05 0.00 38.78 4.18
1288 1411 1.229788 AGCCAAAGAGCCTCCTCCT 60.230 57.895 0.00 0.00 38.96 3.69
1734 1863 1.517361 CCGCTGCTCCTCACACATA 59.483 57.895 0.00 0.00 0.00 2.29
1784 1913 0.596083 CGTCTCCTGATCATCACGGC 60.596 60.000 0.00 0.00 0.00 5.68
1839 1968 2.514824 GTGCCGATTGCCTCCTCC 60.515 66.667 0.00 0.00 40.16 4.30
1841 1970 4.473520 CCGTGCCGATTGCCTCCT 62.474 66.667 0.00 0.00 40.16 3.69
1846 1975 3.869272 CTCAGCCGTGCCGATTGC 61.869 66.667 0.00 0.00 41.77 3.56
1847 1976 1.493950 GATCTCAGCCGTGCCGATTG 61.494 60.000 0.00 0.00 0.00 2.67
1848 1977 1.227380 GATCTCAGCCGTGCCGATT 60.227 57.895 0.00 0.00 0.00 3.34
1849 1978 2.360949 CTGATCTCAGCCGTGCCGAT 62.361 60.000 0.00 0.00 37.15 4.18
1850 1979 3.068064 TGATCTCAGCCGTGCCGA 61.068 61.111 0.00 0.00 0.00 5.54
1851 1980 2.584418 CTGATCTCAGCCGTGCCG 60.584 66.667 0.00 0.00 37.15 5.69
2236 2384 0.915872 ATGGTCCTCACTGGCATCCA 60.916 55.000 0.00 0.00 36.13 3.41
2245 2393 6.570672 TTAGTACGATGATATGGTCCTCAC 57.429 41.667 0.00 0.00 0.00 3.51
2306 2460 3.818787 GCATGCTGCAACCCGAGG 61.819 66.667 11.37 0.00 44.26 4.63
2343 2497 2.935238 GCCGGCTGAACTAACATCAGAA 60.935 50.000 22.15 0.00 45.74 3.02
2345 2499 1.009829 GCCGGCTGAACTAACATCAG 58.990 55.000 22.15 0.00 45.65 2.90
2351 2526 1.669760 CCAACGCCGGCTGAACTAA 60.670 57.895 26.68 0.00 0.00 2.24
2361 2536 0.446222 AACGAAATGATCCAACGCCG 59.554 50.000 0.00 0.00 0.00 6.46
2386 2561 2.297701 TGAGTTGGAACTTGGAAGTGC 58.702 47.619 0.00 0.00 39.88 4.40
2387 2562 4.023707 GTCATGAGTTGGAACTTGGAAGTG 60.024 45.833 0.00 0.00 39.88 3.16
2388 2563 4.137543 GTCATGAGTTGGAACTTGGAAGT 58.862 43.478 0.00 0.00 39.88 3.01
2389 2564 4.136796 TGTCATGAGTTGGAACTTGGAAG 58.863 43.478 0.00 0.00 39.88 3.46
2415 2590 0.679505 CTGTGGTGGAGGAGACGAAA 59.320 55.000 0.00 0.00 0.00 3.46
2436 2611 5.458041 AACATGTCCACTGAAAAGAATGG 57.542 39.130 0.00 0.00 0.00 3.16
2437 2612 6.292488 GCAAAACATGTCCACTGAAAAGAATG 60.292 38.462 0.00 0.00 0.00 2.67
2438 2613 5.754890 GCAAAACATGTCCACTGAAAAGAAT 59.245 36.000 0.00 0.00 0.00 2.40
2439 2614 5.105392 AGCAAAACATGTCCACTGAAAAGAA 60.105 36.000 0.00 0.00 0.00 2.52
2440 2615 4.402155 AGCAAAACATGTCCACTGAAAAGA 59.598 37.500 0.00 0.00 0.00 2.52
2441 2616 4.505191 CAGCAAAACATGTCCACTGAAAAG 59.495 41.667 0.00 0.00 0.00 2.27
2465 2641 0.038251 TGAGCCTGTTACTGCACTCG 60.038 55.000 0.00 0.00 0.00 4.18
2503 2716 4.855482 GCTTTACAGCTAATTGCAAAGGCA 60.855 41.667 18.81 0.00 45.54 4.75
2504 2717 3.614176 GCTTTACAGCTAATTGCAAAGGC 59.386 43.478 1.71 8.38 45.94 4.35
2506 2719 4.722194 TCGCTTTACAGCTAATTGCAAAG 58.278 39.130 1.71 0.00 44.85 2.77
2509 2722 3.125146 CACTCGCTTTACAGCTAATTGCA 59.875 43.478 0.00 0.00 44.85 4.08
2510 2723 3.125316 ACACTCGCTTTACAGCTAATTGC 59.875 43.478 0.00 0.00 44.85 3.56
2511 2724 4.388773 TCACACTCGCTTTACAGCTAATTG 59.611 41.667 0.00 0.00 44.85 2.32
2517 2730 3.424962 GGATTTCACACTCGCTTTACAGC 60.425 47.826 0.00 0.00 43.41 4.40
2531 2744 6.254157 CCAACATTTGATCATTCGGATTTCAC 59.746 38.462 0.00 0.00 36.00 3.18
2543 2756 8.420222 ACTAACATTTGAACCAACATTTGATCA 58.580 29.630 0.00 0.00 0.00 2.92
2554 2767 6.212791 AGCTCCTAGTACTAACATTTGAACCA 59.787 38.462 3.76 0.00 0.00 3.67
2557 2770 6.405508 CCGAGCTCCTAGTACTAACATTTGAA 60.406 42.308 8.47 0.00 0.00 2.69
2558 2771 5.067413 CCGAGCTCCTAGTACTAACATTTGA 59.933 44.000 8.47 0.00 0.00 2.69
2559 2772 5.067413 TCCGAGCTCCTAGTACTAACATTTG 59.933 44.000 8.47 0.00 0.00 2.32
2560 2773 5.198965 TCCGAGCTCCTAGTACTAACATTT 58.801 41.667 8.47 0.00 0.00 2.32
2561 2774 4.789807 TCCGAGCTCCTAGTACTAACATT 58.210 43.478 8.47 0.00 0.00 2.71
2562 2775 4.434545 TCCGAGCTCCTAGTACTAACAT 57.565 45.455 8.47 0.00 0.00 2.71
2564 2777 5.521544 CAATTCCGAGCTCCTAGTACTAAC 58.478 45.833 8.47 0.00 0.00 2.34
2565 2778 4.037684 GCAATTCCGAGCTCCTAGTACTAA 59.962 45.833 8.47 0.00 0.00 2.24
2567 2780 2.362717 GCAATTCCGAGCTCCTAGTACT 59.637 50.000 8.47 0.00 0.00 2.73
2568 2781 2.362717 AGCAATTCCGAGCTCCTAGTAC 59.637 50.000 8.47 0.00 36.00 2.73
2569 2782 2.667470 AGCAATTCCGAGCTCCTAGTA 58.333 47.619 8.47 0.00 36.00 1.82
2570 2783 1.490574 AGCAATTCCGAGCTCCTAGT 58.509 50.000 8.47 0.00 36.00 2.57
2577 2790 0.376502 GCAAGAGAGCAATTCCGAGC 59.623 55.000 0.00 0.00 0.00 5.03
2588 2801 5.410746 TGAGCTCAAAAAGTATGCAAGAGAG 59.589 40.000 15.67 0.00 0.00 3.20
2601 2814 5.415701 GTGTCCCTGAATATGAGCTCAAAAA 59.584 40.000 22.50 9.91 0.00 1.94
2602 2815 4.943705 GTGTCCCTGAATATGAGCTCAAAA 59.056 41.667 22.50 12.67 0.00 2.44
2603 2816 4.019411 TGTGTCCCTGAATATGAGCTCAAA 60.019 41.667 22.50 0.00 0.00 2.69
2632 2854 9.135843 CCGCGAATTTCAGTACTATAATGAATA 57.864 33.333 8.23 0.00 41.62 1.75
2633 2855 7.870954 TCCGCGAATTTCAGTACTATAATGAAT 59.129 33.333 8.23 0.00 41.62 2.57
2634 2856 7.204604 TCCGCGAATTTCAGTACTATAATGAA 58.795 34.615 8.23 0.00 40.51 2.57
2635 2857 6.741109 TCCGCGAATTTCAGTACTATAATGA 58.259 36.000 8.23 0.00 0.00 2.57
2636 2858 6.861572 TCTCCGCGAATTTCAGTACTATAATG 59.138 38.462 8.23 0.00 0.00 1.90
2637 2859 6.862090 GTCTCCGCGAATTTCAGTACTATAAT 59.138 38.462 8.23 0.00 0.00 1.28
2647 2869 1.019278 GCCTGTCTCCGCGAATTTCA 61.019 55.000 8.23 0.00 0.00 2.69
2663 2885 6.166982 GCAAATATTACTTATCTCTCGGCCT 58.833 40.000 0.00 0.00 0.00 5.19
2679 2901 4.536065 CGACACAACACACTGCAAATATT 58.464 39.130 0.00 0.00 0.00 1.28
2723 2945 4.518211 GGATCAGGCTAATTCTTGATGGTG 59.482 45.833 0.00 0.00 0.00 4.17
2725 2947 4.983053 AGGATCAGGCTAATTCTTGATGG 58.017 43.478 0.00 0.00 0.00 3.51
2726 2948 5.642919 GCTAGGATCAGGCTAATTCTTGATG 59.357 44.000 0.00 0.00 0.00 3.07
2728 2950 4.655649 TGCTAGGATCAGGCTAATTCTTGA 59.344 41.667 0.00 0.00 0.00 3.02
2729 2951 4.965814 TGCTAGGATCAGGCTAATTCTTG 58.034 43.478 0.00 0.00 0.00 3.02
2730 2952 5.636903 TTGCTAGGATCAGGCTAATTCTT 57.363 39.130 0.00 0.00 0.00 2.52
2733 2955 5.379706 ACTTTGCTAGGATCAGGCTAATT 57.620 39.130 0.00 0.00 0.00 1.40
2734 2956 5.128919 CAACTTTGCTAGGATCAGGCTAAT 58.871 41.667 0.00 0.00 0.00 1.73
2735 2957 4.019321 ACAACTTTGCTAGGATCAGGCTAA 60.019 41.667 0.00 0.00 0.00 3.09
2749 2971 2.221055 CACTGTCGGTCTACAACTTTGC 59.779 50.000 0.00 0.00 0.00 3.68
2752 2974 1.411246 TGCACTGTCGGTCTACAACTT 59.589 47.619 0.00 0.00 0.00 2.66
2786 3009 1.153823 CACGAGTCTCCGCCGAATT 60.154 57.895 0.00 0.00 0.00 2.17
2792 3015 4.700037 CTCATCACGAGTCTCCGC 57.300 61.111 0.00 0.00 36.94 5.54
2801 3024 1.133253 CCGCAAGCAACTCATCACG 59.867 57.895 0.00 0.00 0.00 4.35
2802 3025 1.154150 GCCGCAAGCAACTCATCAC 60.154 57.895 0.00 0.00 42.97 3.06
2818 3041 2.527951 ATCTGACCAAGAGCCGTGCC 62.528 60.000 0.00 0.00 38.67 5.01
2853 3076 3.274288 GAATCAGGTTCCGCTTCATCTT 58.726 45.455 0.00 0.00 0.00 2.40
2878 3104 3.977244 CAAAGTGGGTGCGGGTGC 61.977 66.667 0.00 0.00 43.20 5.01
2884 3110 0.461693 TTTTGCTGCAAAGTGGGTGC 60.462 50.000 24.83 0.00 42.55 5.01
2886 3112 0.465287 CCTTTTGCTGCAAAGTGGGT 59.535 50.000 27.05 0.00 34.72 4.51
2887 3113 0.752054 TCCTTTTGCTGCAAAGTGGG 59.248 50.000 30.49 27.53 34.72 4.61
2888 3114 2.600470 TTCCTTTTGCTGCAAAGTGG 57.400 45.000 28.00 28.00 34.72 4.00
2899 3126 6.198216 CCGATATTAAAACGCCATTCCTTTTG 59.802 38.462 0.00 0.00 0.00 2.44
2925 3152 2.282462 AACAAAGGGAGGCGCTGG 60.282 61.111 7.64 0.00 0.00 4.85
2931 3158 2.305927 TCAGCTTAGGAACAAAGGGAGG 59.694 50.000 0.00 0.00 0.00 4.30
2960 3187 2.339418 CACGCCACTATTGTCCGTAAA 58.661 47.619 3.05 0.00 32.40 2.01
2976 3203 1.081840 GCTGCAGAAACTTCCACGC 60.082 57.895 20.43 0.00 0.00 5.34
3036 3269 2.711185 GAACGCCAGAAACACGTGCC 62.711 60.000 17.22 5.21 40.44 5.01
3069 3302 0.814457 TGCCATATGAACCAAACCGC 59.186 50.000 3.65 0.00 0.00 5.68
3070 3303 2.355756 CTCTGCCATATGAACCAAACCG 59.644 50.000 3.65 0.00 0.00 4.44
3080 3313 8.114331 TCTAAATTATTTGCCTCTGCCATATG 57.886 34.615 0.00 0.00 36.33 1.78
3084 3317 4.339247 GCTCTAAATTATTTGCCTCTGCCA 59.661 41.667 0.00 0.00 36.33 4.92
3102 3335 3.697045 GAGGTCTTGCTAGAGTTGCTCTA 59.303 47.826 0.00 5.84 41.50 2.43
3103 3336 2.495669 GAGGTCTTGCTAGAGTTGCTCT 59.504 50.000 0.00 4.02 43.83 4.09
3104 3337 2.733858 CGAGGTCTTGCTAGAGTTGCTC 60.734 54.545 0.00 0.00 0.00 4.26
3105 3338 1.203523 CGAGGTCTTGCTAGAGTTGCT 59.796 52.381 0.00 0.00 0.00 3.91
3106 3339 1.634702 CGAGGTCTTGCTAGAGTTGC 58.365 55.000 0.00 0.00 0.00 4.17
3107 3340 1.067565 TGCGAGGTCTTGCTAGAGTTG 60.068 52.381 11.07 0.00 40.60 3.16
3108 3341 1.257743 TGCGAGGTCTTGCTAGAGTT 58.742 50.000 11.07 0.00 40.60 3.01
3109 3342 1.479709 ATGCGAGGTCTTGCTAGAGT 58.520 50.000 11.07 0.00 40.60 3.24
3110 3343 2.593346 AATGCGAGGTCTTGCTAGAG 57.407 50.000 11.07 0.00 40.60 2.43
3111 3344 3.002791 CAAAATGCGAGGTCTTGCTAGA 58.997 45.455 11.07 0.00 40.60 2.43
3112 3345 2.476854 GCAAAATGCGAGGTCTTGCTAG 60.477 50.000 11.07 0.00 40.60 3.42
3113 3346 1.468520 GCAAAATGCGAGGTCTTGCTA 59.531 47.619 11.07 0.00 40.60 3.49
3114 3347 0.242017 GCAAAATGCGAGGTCTTGCT 59.758 50.000 11.07 0.00 40.60 3.91
3115 3348 0.733909 GGCAAAATGCGAGGTCTTGC 60.734 55.000 3.34 3.34 46.21 4.01
3116 3349 0.454957 CGGCAAAATGCGAGGTCTTG 60.455 55.000 0.00 0.00 46.21 3.02
3117 3350 0.605319 TCGGCAAAATGCGAGGTCTT 60.605 50.000 0.00 0.00 46.21 3.01
3118 3351 1.003839 TCGGCAAAATGCGAGGTCT 60.004 52.632 0.00 0.00 46.21 3.85
3119 3352 1.134694 GTCGGCAAAATGCGAGGTC 59.865 57.895 0.00 0.00 46.21 3.85
3120 3353 2.332654 GGTCGGCAAAATGCGAGGT 61.333 57.895 0.00 0.00 46.21 3.85
3121 3354 2.485122 GGTCGGCAAAATGCGAGG 59.515 61.111 0.00 0.00 46.21 4.63
3122 3355 2.485122 GGGTCGGCAAAATGCGAG 59.515 61.111 0.00 0.00 46.21 5.03
3123 3356 2.783241 TACGGGTCGGCAAAATGCGA 62.783 55.000 0.00 0.00 46.21 5.10
3124 3357 1.913451 TTACGGGTCGGCAAAATGCG 61.913 55.000 0.00 0.00 46.21 4.73
3125 3358 0.241481 TTTACGGGTCGGCAAAATGC 59.759 50.000 0.00 0.00 44.08 3.56
3126 3359 2.708386 TTTTACGGGTCGGCAAAATG 57.292 45.000 0.00 0.00 0.00 2.32
3127 3360 2.559231 ACATTTTACGGGTCGGCAAAAT 59.441 40.909 0.00 8.18 36.66 1.82
3128 3361 1.955080 ACATTTTACGGGTCGGCAAAA 59.045 42.857 0.00 0.00 32.64 2.44
3129 3362 1.267261 CACATTTTACGGGTCGGCAAA 59.733 47.619 0.00 0.00 0.00 3.68
3130 3363 0.875728 CACATTTTACGGGTCGGCAA 59.124 50.000 0.00 0.00 0.00 4.52
3131 3364 0.250381 ACACATTTTACGGGTCGGCA 60.250 50.000 0.00 0.00 0.00 5.69
3132 3365 0.876399 AACACATTTTACGGGTCGGC 59.124 50.000 0.00 0.00 0.00 5.54
3133 3366 2.918968 GCAAACACATTTTACGGGTCGG 60.919 50.000 0.00 0.00 0.00 4.79
3134 3367 2.287069 TGCAAACACATTTTACGGGTCG 60.287 45.455 0.00 0.00 0.00 4.79
3135 3368 3.357166 TGCAAACACATTTTACGGGTC 57.643 42.857 0.00 0.00 0.00 4.46
3136 3369 3.131400 ACTTGCAAACACATTTTACGGGT 59.869 39.130 0.00 0.00 0.00 5.28
3137 3370 3.712187 ACTTGCAAACACATTTTACGGG 58.288 40.909 0.00 0.00 0.00 5.28
3138 3371 3.420576 CGACTTGCAAACACATTTTACGG 59.579 43.478 0.00 0.00 0.00 4.02
3139 3372 3.121828 GCGACTTGCAAACACATTTTACG 60.122 43.478 0.00 0.00 45.45 3.18
3140 3373 4.354725 GCGACTTGCAAACACATTTTAC 57.645 40.909 0.00 0.00 45.45 2.01
3154 3387 3.642778 ATCGTCCCCGTGCGACTTG 62.643 63.158 0.00 0.00 40.03 3.16
3155 3388 1.597797 TAATCGTCCCCGTGCGACTT 61.598 55.000 0.00 0.00 40.03 3.01
3156 3389 1.389609 ATAATCGTCCCCGTGCGACT 61.390 55.000 0.00 0.00 40.03 4.18
3157 3390 1.066918 ATAATCGTCCCCGTGCGAC 59.933 57.895 0.00 0.00 40.03 5.19
3158 3391 1.066752 CATAATCGTCCCCGTGCGA 59.933 57.895 0.00 0.00 41.50 5.10
3159 3392 2.594962 GCATAATCGTCCCCGTGCG 61.595 63.158 0.00 0.00 35.01 5.34
3160 3393 1.498865 CTGCATAATCGTCCCCGTGC 61.499 60.000 0.00 0.00 34.17 5.34
3161 3394 0.880278 CCTGCATAATCGTCCCCGTG 60.880 60.000 0.00 0.00 35.01 4.94
3162 3395 1.445942 CCTGCATAATCGTCCCCGT 59.554 57.895 0.00 0.00 35.01 5.28
3163 3396 1.961277 GCCTGCATAATCGTCCCCG 60.961 63.158 0.00 0.00 0.00 5.73
3164 3397 1.600916 GGCCTGCATAATCGTCCCC 60.601 63.158 0.00 0.00 0.00 4.81
3165 3398 1.961277 CGGCCTGCATAATCGTCCC 60.961 63.158 0.00 0.00 0.00 4.46
3166 3399 0.531974 TTCGGCCTGCATAATCGTCC 60.532 55.000 0.00 0.00 0.00 4.79
3167 3400 1.295792 TTTCGGCCTGCATAATCGTC 58.704 50.000 0.00 0.00 0.00 4.20
3168 3401 1.745232 TTTTCGGCCTGCATAATCGT 58.255 45.000 0.00 0.00 0.00 3.73
3169 3402 3.044986 CAATTTTCGGCCTGCATAATCG 58.955 45.455 0.00 0.00 0.00 3.34
3170 3403 2.796593 GCAATTTTCGGCCTGCATAATC 59.203 45.455 7.48 0.00 34.87 1.75
3171 3404 2.799207 CGCAATTTTCGGCCTGCATAAT 60.799 45.455 12.34 0.00 34.39 1.28
3172 3405 1.468908 CGCAATTTTCGGCCTGCATAA 60.469 47.619 12.34 0.00 34.39 1.90
3173 3406 0.100325 CGCAATTTTCGGCCTGCATA 59.900 50.000 12.34 0.00 34.39 3.14
3174 3407 1.153784 CGCAATTTTCGGCCTGCAT 60.154 52.632 12.34 0.00 34.39 3.96
3175 3408 2.257980 CGCAATTTTCGGCCTGCA 59.742 55.556 12.34 0.00 34.39 4.41
3176 3409 2.506881 CCGCAATTTTCGGCCTGC 60.507 61.111 0.00 0.89 40.46 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.