Multiple sequence alignment - TraesCS2D01G447500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G447500 chr2D 100.000 4154 0 0 1 4154 557265101 557269254 0.000000e+00 7672.0
1 TraesCS2D01G447500 chr2D 94.318 88 5 0 2079 2166 299891016 299891103 7.240000e-28 135.0
2 TraesCS2D01G447500 chr2D 89.796 98 8 1 2071 2166 6664750 6664847 1.570000e-24 124.0
3 TraesCS2D01G447500 chr2A 91.450 3275 158 40 695 3946 697299981 697303156 0.000000e+00 4385.0
4 TraesCS2D01G447500 chr2A 90.028 722 60 5 1 713 697297833 697298551 0.000000e+00 924.0
5 TraesCS2D01G447500 chr2A 95.556 90 2 2 2082 2169 593655994 593655905 4.330000e-30 143.0
6 TraesCS2D01G447500 chr2A 91.837 98 7 1 2076 2172 4969446 4969543 7.240000e-28 135.0
7 TraesCS2D01G447500 chr2A 94.286 35 2 0 251 285 134876280 134876314 2.000000e-03 54.7
8 TraesCS2D01G447500 chr2B 93.454 2047 77 17 724 2739 665186989 665189009 0.000000e+00 2985.0
9 TraesCS2D01G447500 chr2B 90.443 722 56 7 2790 3502 665189006 665189723 0.000000e+00 939.0
10 TraesCS2D01G447500 chr2B 91.026 78 7 0 2078 2155 616959410 616959487 5.680000e-19 106.0
11 TraesCS2D01G447500 chr2B 90.566 53 5 0 561 613 138808524 138808472 2.070000e-08 71.3
12 TraesCS2D01G447500 chr3A 93.632 424 17 4 930 1344 58039204 58039626 3.530000e-175 625.0
13 TraesCS2D01G447500 chr3A 83.654 104 16 1 1 104 201530704 201530806 3.420000e-16 97.1
14 TraesCS2D01G447500 chr3A 85.870 92 12 1 2076 2167 609951655 609951745 3.420000e-16 97.1
15 TraesCS2D01G447500 chr3B 94.565 92 5 0 2075 2166 680423291 680423382 4.330000e-30 143.0
16 TraesCS2D01G447500 chr3B 92.632 95 5 2 2082 2174 126580149 126580055 7.240000e-28 135.0
17 TraesCS2D01G447500 chr4A 95.349 86 4 0 2081 2166 590111546 590111631 2.010000e-28 137.0
18 TraesCS2D01G447500 chr3D 92.135 89 7 0 2084 2172 516880548 516880460 4.360000e-25 126.0
19 TraesCS2D01G447500 chr3D 89.655 58 6 0 557 614 456542397 456542454 1.600000e-09 75.0
20 TraesCS2D01G447500 chr3D 91.489 47 4 0 244 290 454888283 454888329 9.640000e-07 65.8
21 TraesCS2D01G447500 chr7A 89.583 96 8 1 2074 2167 675318618 675318713 2.030000e-23 121.0
22 TraesCS2D01G447500 chr7A 80.435 92 16 1 534 625 14185250 14185161 7.450000e-08 69.4
23 TraesCS2D01G447500 chr6B 80.000 125 15 9 487 605 703682103 703681983 2.660000e-12 84.2
24 TraesCS2D01G447500 chr5D 77.483 151 20 10 469 614 488852543 488852684 1.240000e-10 78.7
25 TraesCS2D01G447500 chr5D 81.928 83 12 3 531 613 466246717 466246638 2.680000e-07 67.6
26 TraesCS2D01G447500 chr5B 90.741 54 3 1 561 614 602240762 602240813 2.070000e-08 71.3
27 TraesCS2D01G447500 chr4B 91.667 48 4 0 566 613 78200197 78200244 2.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G447500 chr2D 557265101 557269254 4153 False 7672.0 7672 100.0000 1 4154 1 chr2D.!!$F3 4153
1 TraesCS2D01G447500 chr2A 697297833 697303156 5323 False 2654.5 4385 90.7390 1 3946 2 chr2A.!!$F3 3945
2 TraesCS2D01G447500 chr2B 665186989 665189723 2734 False 1962.0 2985 91.9485 724 3502 2 chr2B.!!$F2 2778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 627 0.249868 CCACTTGACGTGCTCTTGGA 60.250 55.0 0.00 0.00 42.42 3.53 F
1331 2799 0.526662 GTCAAGGACGTCGAGGTGAT 59.473 55.0 16.63 0.44 0.00 3.06 F
2311 3805 1.119684 CACCATCTCCGGACACCATA 58.880 55.0 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 3886 1.110442 TGTTGGCAGAAACTGGGTTG 58.890 50.0 0.00 0.0 31.21 3.77 R
2679 4173 1.123077 AGAGGCATACGGATTGCTCA 58.877 50.0 6.48 0.0 40.03 4.26 R
3823 5327 0.030235 GTTGCCGGCGTTTCTCTTTT 59.970 50.0 23.90 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.873605 CCAAAAGATTTTATCCCTTGAACCAC 59.126 38.462 0.00 0.00 0.00 4.16
49 50 3.495434 TTATCCCTTGAACCACGTGTT 57.505 42.857 15.65 8.89 40.81 3.32
233 242 3.297134 AAAAGAAGAACACAGAGCCCA 57.703 42.857 0.00 0.00 0.00 5.36
240 249 2.427095 AGAACACAGAGCCCAAAAACAC 59.573 45.455 0.00 0.00 0.00 3.32
246 255 0.458260 GAGCCCAAAAACACGGTTGT 59.542 50.000 0.00 0.00 37.67 3.32
271 280 4.769345 TTTCCCTTTTTGGAAAGCACAT 57.231 36.364 1.23 0.00 46.76 3.21
309 318 0.824109 GCATAAGGGGTGCTTTTCCC 59.176 55.000 0.00 0.00 43.90 3.97
315 324 0.317160 GGGGTGCTTTTCCCTTTTCG 59.683 55.000 0.96 0.00 44.07 3.46
348 357 6.402118 GCACATCTATGTTTCTTACGAAAGCA 60.402 38.462 0.00 0.00 39.65 3.91
371 380 7.628446 GCAAATATGTGCTTGTACGAGAAACG 61.628 42.308 14.70 0.00 43.55 3.60
377 386 2.779969 GCTTGTACGAGAAACGCAATCG 60.780 50.000 14.70 0.00 46.94 3.34
394 403 3.609103 ATCGTGCTCTTGTGAAAACAC 57.391 42.857 0.00 0.00 0.00 3.32
401 410 7.119116 TCGTGCTCTTGTGAAAACACATATATT 59.881 33.333 3.95 0.00 34.76 1.28
414 423 9.979578 AAAACACATATATTTTGAAGAAGCACA 57.020 25.926 0.00 0.00 0.00 4.57
417 426 9.182214 ACACATATATTTTGAAGAAGCACAGAT 57.818 29.630 0.00 0.00 0.00 2.90
568 578 2.414994 AATCATGAGTGAGCACCCAG 57.585 50.000 0.09 0.00 37.87 4.45
615 625 0.583438 CACCACTTGACGTGCTCTTG 59.417 55.000 0.00 0.00 42.42 3.02
617 627 0.249868 CCACTTGACGTGCTCTTGGA 60.250 55.000 0.00 0.00 42.42 3.53
623 633 1.684450 TGACGTGCTCTTGGACTACAA 59.316 47.619 0.00 0.00 37.55 2.41
625 635 2.731976 GACGTGCTCTTGGACTACAAAG 59.268 50.000 0.00 0.00 38.91 2.77
629 639 2.289694 TGCTCTTGGACTACAAAGCTCC 60.290 50.000 0.00 0.00 38.91 4.70
638 648 2.367567 ACTACAAAGCTCCCACGAAAGA 59.632 45.455 0.00 0.00 0.00 2.52
640 650 3.695830 ACAAAGCTCCCACGAAAGATA 57.304 42.857 0.00 0.00 0.00 1.98
647 657 3.065371 GCTCCCACGAAAGATAACCATTG 59.935 47.826 0.00 0.00 0.00 2.82
701 711 9.488762 TCTACTTCATCCGTCCCATAATATAAT 57.511 33.333 0.00 0.00 0.00 1.28
1085 2553 1.743995 GGCGCATTTCCCAGTACGT 60.744 57.895 10.83 0.00 0.00 3.57
1331 2799 0.526662 GTCAAGGACGTCGAGGTGAT 59.473 55.000 16.63 0.44 0.00 3.06
1333 2801 2.014857 TCAAGGACGTCGAGGTGATAG 58.985 52.381 16.63 3.46 0.00 2.08
1346 2814 3.641031 TGATAGACACACGATGCCG 57.359 52.632 0.00 0.00 42.50 5.69
1398 2866 1.515088 CGCGCGTTCTCTGAGTGAT 60.515 57.895 24.19 0.00 0.00 3.06
1591 3070 3.814842 CGTGGATGAATGCTGCCTTATAA 59.185 43.478 0.00 0.00 0.00 0.98
1592 3071 4.319766 CGTGGATGAATGCTGCCTTATAAC 60.320 45.833 0.00 0.00 0.00 1.89
1620 3099 5.587289 TGTGCTAAATGTTGTTTTGACCTC 58.413 37.500 0.00 0.00 0.00 3.85
1633 3112 7.873719 TGTTTTGACCTCTGAAGTGAAATTA 57.126 32.000 0.00 0.00 0.00 1.40
1634 3113 8.287439 TGTTTTGACCTCTGAAGTGAAATTAA 57.713 30.769 0.00 0.00 0.00 1.40
1635 3114 8.912988 TGTTTTGACCTCTGAAGTGAAATTAAT 58.087 29.630 0.00 0.00 0.00 1.40
1636 3115 9.750125 GTTTTGACCTCTGAAGTGAAATTAATT 57.250 29.630 0.00 0.00 0.00 1.40
1727 3213 2.222227 AATTCCTCAAGGTCAAGGGC 57.778 50.000 0.00 0.00 36.34 5.19
1730 3216 1.376037 CCTCAAGGTCAAGGGCGAC 60.376 63.158 0.00 0.00 35.03 5.19
1733 3219 2.027625 CAAGGTCAAGGGCGACGAC 61.028 63.158 0.00 0.00 36.73 4.34
1746 3232 1.807738 CGACGACGCTAGAACTTACC 58.192 55.000 0.00 0.00 0.00 2.85
1753 3239 4.171754 GACGCTAGAACTTACCATTCGTT 58.828 43.478 0.00 0.00 0.00 3.85
1912 3406 7.115947 CGGACAGAAAAGTTTACTACGATCTTT 59.884 37.037 0.00 0.00 0.00 2.52
2222 3716 8.689061 TCTTATGCTAAATTCTGCATCACAATT 58.311 29.630 17.64 1.28 45.50 2.32
2272 3766 5.200368 TCAAGGTGGAATTTTCAAAGAGC 57.800 39.130 0.00 0.00 0.00 4.09
2284 3778 6.530019 TTTTCAAAGAGCTTCAGAAAACCT 57.470 33.333 14.30 0.00 34.54 3.50
2311 3805 1.119684 CACCATCTCCGGACACCATA 58.880 55.000 0.00 0.00 0.00 2.74
2383 3877 4.285517 TCTGCTGATCTGAAGGAGTTCTTT 59.714 41.667 7.69 0.00 35.50 2.52
2385 3879 5.380043 TGCTGATCTGAAGGAGTTCTTTTT 58.620 37.500 3.42 0.00 35.50 1.94
2392 3886 7.787725 TCTGAAGGAGTTCTTTTTACAGTTC 57.212 36.000 0.00 0.00 35.50 3.01
2410 3904 1.398692 TCAACCCAGTTTCTGCCAAC 58.601 50.000 0.00 0.00 0.00 3.77
2583 4077 8.383619 CCGAGATCGATCATTCATAAATTAACC 58.616 37.037 26.47 0.00 43.02 2.85
2627 4121 3.624326 GCTTGATGCACACACTTGTTA 57.376 42.857 0.00 0.00 42.31 2.41
2703 4197 2.682856 GCAATCCGTATGCCTCTTTTGA 59.317 45.455 0.00 0.00 37.85 2.69
2713 4207 8.455682 CCGTATGCCTCTTTTGACTTAATTAAA 58.544 33.333 0.00 0.00 0.00 1.52
2757 4251 7.640616 TTATGATGCATTTGTTGAAGTTGTG 57.359 32.000 0.00 0.00 0.00 3.33
2895 4391 8.548721 GTTATATGATAAAACGTGTCTTCTGGG 58.451 37.037 0.00 0.00 0.00 4.45
2910 4406 6.884295 TGTCTTCTGGGTTATTTCCTTACATG 59.116 38.462 0.00 0.00 0.00 3.21
2914 4410 5.885912 TCTGGGTTATTTCCTTACATGCTTC 59.114 40.000 0.00 0.00 0.00 3.86
2960 4456 6.892658 TGTTGGACTACAAGCACATTAATT 57.107 33.333 0.00 0.00 40.38 1.40
2963 4459 6.677781 TGGACTACAAGCACATTAATTAGC 57.322 37.500 1.51 1.51 0.00 3.09
3039 4535 0.759436 TCCTAAGATGGCGGGAGGAC 60.759 60.000 0.00 0.00 31.25 3.85
3047 4543 0.536460 TGGCGGGAGGACAAAGAAAC 60.536 55.000 0.00 0.00 0.00 2.78
3074 4570 2.373169 AGGCTGATGGTGAAGTTGAAGA 59.627 45.455 0.00 0.00 0.00 2.87
3197 4694 6.402658 GGAGAAAGTTGCAGTAGCTTATTGAC 60.403 42.308 0.00 0.00 42.74 3.18
3236 4733 6.465084 GGAAACTCATTGTACAGGTAGAAGT 58.535 40.000 0.00 0.00 0.00 3.01
3340 4844 5.207110 TCTTGCAGATACAGAATAGAGGC 57.793 43.478 0.00 0.00 0.00 4.70
3395 4899 4.439968 TCTGTCATGATGCTGCTAAGAAG 58.560 43.478 0.00 0.00 0.00 2.85
3430 4934 2.017049 GCATTAGCCGTGATCAAGGTT 58.983 47.619 25.73 22.81 32.29 3.50
3449 4953 4.946157 AGGTTAAACATCATCCTTGAGCAG 59.054 41.667 0.00 0.00 34.73 4.24
3553 5057 4.456911 TGTCGTTCCGAGATACTTGTAGTT 59.543 41.667 0.00 0.00 36.23 2.24
3555 5059 5.860716 GTCGTTCCGAGATACTTGTAGTTTT 59.139 40.000 0.00 0.00 36.23 2.43
3562 5066 7.974501 TCCGAGATACTTGTAGTTTTCTGATTC 59.025 37.037 0.00 0.00 0.00 2.52
3706 5210 4.955811 GGAAACCCTCCTGATTTGTTTT 57.044 40.909 0.00 0.00 41.61 2.43
3708 5212 6.605471 GGAAACCCTCCTGATTTGTTTTAT 57.395 37.500 0.00 0.00 41.61 1.40
3709 5213 7.004555 GGAAACCCTCCTGATTTGTTTTATT 57.995 36.000 0.00 0.00 41.61 1.40
3710 5214 8.129496 GGAAACCCTCCTGATTTGTTTTATTA 57.871 34.615 0.00 0.00 41.61 0.98
3711 5215 8.251026 GGAAACCCTCCTGATTTGTTTTATTAG 58.749 37.037 0.00 0.00 41.61 1.73
3712 5216 8.950007 AAACCCTCCTGATTTGTTTTATTAGA 57.050 30.769 0.00 0.00 0.00 2.10
3713 5217 8.950007 AACCCTCCTGATTTGTTTTATTAGAA 57.050 30.769 0.00 0.00 0.00 2.10
3714 5218 8.950007 ACCCTCCTGATTTGTTTTATTAGAAA 57.050 30.769 0.00 0.00 0.00 2.52
3715 5219 8.803235 ACCCTCCTGATTTGTTTTATTAGAAAC 58.197 33.333 0.00 0.00 39.41 2.78
3716 5220 9.025041 CCCTCCTGATTTGTTTTATTAGAAACT 57.975 33.333 2.68 0.00 39.62 2.66
3717 5221 9.846248 CCTCCTGATTTGTTTTATTAGAAACTG 57.154 33.333 2.68 0.00 39.62 3.16
3736 5240 0.606673 GAGAACCAGTTGCCCAGGTC 60.607 60.000 0.00 0.00 33.74 3.85
3737 5241 1.062488 AGAACCAGTTGCCCAGGTCT 61.062 55.000 0.00 0.00 33.74 3.85
3738 5242 0.178990 GAACCAGTTGCCCAGGTCTT 60.179 55.000 0.00 0.00 33.74 3.01
3739 5243 1.073284 GAACCAGTTGCCCAGGTCTTA 59.927 52.381 0.00 0.00 33.74 2.10
3775 5279 0.396435 CAGACAACCTGGGCTGTGTA 59.604 55.000 8.26 0.00 39.23 2.90
3777 5281 0.107831 GACAACCTGGGCTGTGTACA 59.892 55.000 8.26 0.00 0.00 2.90
3785 5289 0.618458 GGGCTGTGTACATCCCTGAA 59.382 55.000 15.00 0.00 46.21 3.02
3792 5296 3.008923 TGTGTACATCCCTGAAGCATTGA 59.991 43.478 0.00 0.00 0.00 2.57
3793 5297 3.375299 GTGTACATCCCTGAAGCATTGAC 59.625 47.826 0.00 0.00 0.00 3.18
3794 5298 3.264193 TGTACATCCCTGAAGCATTGACT 59.736 43.478 0.00 0.00 0.00 3.41
3795 5299 2.719739 ACATCCCTGAAGCATTGACTG 58.280 47.619 0.00 0.00 0.00 3.51
3796 5300 2.022195 CATCCCTGAAGCATTGACTGG 58.978 52.381 0.00 0.00 0.00 4.00
3797 5301 1.067295 TCCCTGAAGCATTGACTGGT 58.933 50.000 0.00 0.00 37.10 4.00
3798 5302 2.265367 TCCCTGAAGCATTGACTGGTA 58.735 47.619 0.00 0.00 33.48 3.25
3799 5303 2.237143 TCCCTGAAGCATTGACTGGTAG 59.763 50.000 0.00 0.00 33.48 3.18
3800 5304 2.012673 CCTGAAGCATTGACTGGTAGC 58.987 52.381 0.00 0.00 33.48 3.58
3801 5305 2.616256 CCTGAAGCATTGACTGGTAGCA 60.616 50.000 0.00 0.00 33.48 3.49
3802 5306 3.076621 CTGAAGCATTGACTGGTAGCAA 58.923 45.455 0.00 0.00 33.48 3.91
3803 5307 3.076621 TGAAGCATTGACTGGTAGCAAG 58.923 45.455 0.00 0.00 33.48 4.01
3804 5308 3.244526 TGAAGCATTGACTGGTAGCAAGA 60.245 43.478 0.00 0.00 33.48 3.02
3815 5319 3.861840 TGGTAGCAAGAGAATTCTTCCG 58.138 45.455 9.87 2.17 41.71 4.30
3820 5324 4.894784 AGCAAGAGAATTCTTCCGTTGTA 58.105 39.130 9.87 0.00 41.71 2.41
3823 5327 7.103641 AGCAAGAGAATTCTTCCGTTGTATAA 58.896 34.615 9.87 0.00 41.71 0.98
3834 5338 7.790000 TCTTCCGTTGTATAAAAAGAGAAACG 58.210 34.615 0.00 0.00 38.80 3.60
3836 5340 5.084055 CCGTTGTATAAAAAGAGAAACGCC 58.916 41.667 0.00 0.00 38.01 5.68
3846 5350 2.354188 GAAACGCCGGCAACCAAC 60.354 61.111 28.98 8.41 0.00 3.77
3854 5358 2.568090 GGCAACCAACGGCATCAG 59.432 61.111 0.00 0.00 0.00 2.90
3855 5359 2.568090 GCAACCAACGGCATCAGG 59.432 61.111 0.00 0.00 0.00 3.86
3856 5360 2.568090 CAACCAACGGCATCAGGC 59.432 61.111 0.00 0.00 43.74 4.85
3867 5371 2.288961 GCATCAGGCAAAACATGGAG 57.711 50.000 0.00 0.00 43.97 3.86
3886 5390 3.507233 GGAGAACATCAAGGCATGTCAAA 59.493 43.478 0.00 0.00 35.87 2.69
3901 5405 6.455913 GGCATGTCAAATGAAAATGAAATCCG 60.456 38.462 10.11 0.00 0.00 4.18
3902 5406 6.091169 GCATGTCAAATGAAAATGAAATCCGT 59.909 34.615 10.11 0.00 0.00 4.69
3925 5429 8.021973 CCGTATATGAAGTAACTACTGGATCAC 58.978 40.741 0.00 0.00 36.50 3.06
3926 5430 8.021973 CGTATATGAAGTAACTACTGGATCACC 58.978 40.741 0.00 0.00 36.50 4.02
3933 5438 6.021030 AGTAACTACTGGATCACCCTTTACA 58.979 40.000 0.00 0.00 34.72 2.41
3959 5464 4.245660 GCCACAGCTAAAATTCCTTTTCC 58.754 43.478 0.00 0.00 36.09 3.13
3960 5465 4.021104 GCCACAGCTAAAATTCCTTTTCCT 60.021 41.667 0.00 0.00 36.09 3.36
3961 5466 5.185056 GCCACAGCTAAAATTCCTTTTCCTA 59.815 40.000 0.00 0.00 36.09 2.94
3962 5467 6.127338 GCCACAGCTAAAATTCCTTTTCCTAT 60.127 38.462 0.00 0.00 36.09 2.57
3963 5468 7.484140 CCACAGCTAAAATTCCTTTTCCTATC 58.516 38.462 0.00 0.00 36.09 2.08
3964 5469 7.340487 CCACAGCTAAAATTCCTTTTCCTATCT 59.660 37.037 0.00 0.00 36.09 1.98
3965 5470 8.401709 CACAGCTAAAATTCCTTTTCCTATCTC 58.598 37.037 0.00 0.00 36.09 2.75
3966 5471 7.558081 ACAGCTAAAATTCCTTTTCCTATCTCC 59.442 37.037 0.00 0.00 36.09 3.71
3967 5472 7.777440 CAGCTAAAATTCCTTTTCCTATCTCCT 59.223 37.037 0.00 0.00 36.09 3.69
3968 5473 9.004231 AGCTAAAATTCCTTTTCCTATCTCCTA 57.996 33.333 0.00 0.00 36.09 2.94
3969 5474 9.628500 GCTAAAATTCCTTTTCCTATCTCCTAA 57.372 33.333 0.00 0.00 36.09 2.69
3972 5477 6.771934 ATTCCTTTTCCTATCTCCTAAGGG 57.228 41.667 0.00 0.00 34.35 3.95
3973 5478 5.236425 TCCTTTTCCTATCTCCTAAGGGT 57.764 43.478 0.00 0.00 34.35 4.34
3974 5479 6.365609 TCCTTTTCCTATCTCCTAAGGGTA 57.634 41.667 0.00 0.00 34.35 3.69
3975 5480 6.141790 TCCTTTTCCTATCTCCTAAGGGTAC 58.858 44.000 0.00 0.00 34.35 3.34
3976 5481 6.067781 TCCTTTTCCTATCTCCTAAGGGTACT 60.068 42.308 0.00 0.00 34.35 2.73
3977 5482 6.616137 CCTTTTCCTATCTCCTAAGGGTACTT 59.384 42.308 0.00 0.00 40.74 2.24
3978 5483 7.202020 CCTTTTCCTATCTCCTAAGGGTACTTC 60.202 44.444 0.00 0.00 38.14 3.01
3979 5484 6.351317 TTCCTATCTCCTAAGGGTACTTCA 57.649 41.667 0.00 0.00 38.14 3.02
3980 5485 6.547396 TCCTATCTCCTAAGGGTACTTCAT 57.453 41.667 0.00 0.00 38.14 2.57
3981 5486 6.935036 TCCTATCTCCTAAGGGTACTTCATT 58.065 40.000 0.00 0.00 38.14 2.57
3982 5487 7.371043 TCCTATCTCCTAAGGGTACTTCATTT 58.629 38.462 0.00 0.00 38.14 2.32
3983 5488 7.290248 TCCTATCTCCTAAGGGTACTTCATTTG 59.710 40.741 0.00 0.00 38.14 2.32
3984 5489 6.893020 ATCTCCTAAGGGTACTTCATTTGT 57.107 37.500 0.00 0.00 38.14 2.83
3985 5490 6.049955 TCTCCTAAGGGTACTTCATTTGTG 57.950 41.667 0.00 0.00 38.14 3.33
3986 5491 5.045869 TCTCCTAAGGGTACTTCATTTGTGG 60.046 44.000 0.00 0.00 38.14 4.17
3987 5492 4.847512 TCCTAAGGGTACTTCATTTGTGGA 59.152 41.667 0.00 0.00 38.14 4.02
3988 5493 5.311121 TCCTAAGGGTACTTCATTTGTGGAA 59.689 40.000 0.00 0.00 38.14 3.53
3989 5494 6.011981 TCCTAAGGGTACTTCATTTGTGGAAT 60.012 38.462 0.00 0.00 38.14 3.01
3990 5495 5.982890 AAGGGTACTTCATTTGTGGAATG 57.017 39.130 0.00 0.00 45.31 2.67
3991 5496 4.344104 AGGGTACTTCATTTGTGGAATGG 58.656 43.478 0.00 0.00 44.30 3.16
3992 5497 4.044065 AGGGTACTTCATTTGTGGAATGGA 59.956 41.667 0.00 0.00 44.30 3.41
3993 5498 4.770010 GGGTACTTCATTTGTGGAATGGAA 59.230 41.667 0.00 0.00 44.30 3.53
3994 5499 5.245075 GGGTACTTCATTTGTGGAATGGAAA 59.755 40.000 0.00 0.00 44.30 3.13
3995 5500 6.239458 GGGTACTTCATTTGTGGAATGGAAAA 60.239 38.462 0.00 0.00 44.30 2.29
3996 5501 6.645003 GGTACTTCATTTGTGGAATGGAAAAC 59.355 38.462 0.00 0.00 44.30 2.43
3997 5502 6.232581 ACTTCATTTGTGGAATGGAAAACA 57.767 33.333 0.00 0.00 44.30 2.83
3998 5503 6.048509 ACTTCATTTGTGGAATGGAAAACAC 58.951 36.000 0.00 0.00 44.30 3.32
3999 5504 5.604758 TCATTTGTGGAATGGAAAACACA 57.395 34.783 0.00 0.00 44.30 3.72
4000 5505 5.599732 TCATTTGTGGAATGGAAAACACAG 58.400 37.500 0.00 0.00 44.30 3.66
4001 5506 5.362143 TCATTTGTGGAATGGAAAACACAGA 59.638 36.000 0.00 0.00 44.30 3.41
4002 5507 5.867903 TTTGTGGAATGGAAAACACAGAT 57.132 34.783 0.00 0.00 43.74 2.90
4003 5508 4.852134 TGTGGAATGGAAAACACAGATG 57.148 40.909 0.00 0.00 38.76 2.90
4004 5509 3.005684 TGTGGAATGGAAAACACAGATGC 59.994 43.478 0.00 0.00 38.76 3.91
4005 5510 2.562298 TGGAATGGAAAACACAGATGCC 59.438 45.455 0.00 0.00 0.00 4.40
4006 5511 2.562298 GGAATGGAAAACACAGATGCCA 59.438 45.455 0.00 0.00 0.00 4.92
4007 5512 3.196254 GGAATGGAAAACACAGATGCCAT 59.804 43.478 0.00 0.00 37.71 4.40
4008 5513 4.402155 GGAATGGAAAACACAGATGCCATA 59.598 41.667 0.00 0.00 35.22 2.74
4009 5514 5.069516 GGAATGGAAAACACAGATGCCATAT 59.930 40.000 0.00 0.00 35.22 1.78
4010 5515 6.407299 GGAATGGAAAACACAGATGCCATATT 60.407 38.462 0.00 0.00 35.22 1.28
4011 5516 5.999205 TGGAAAACACAGATGCCATATTT 57.001 34.783 0.00 0.00 0.00 1.40
4012 5517 5.722263 TGGAAAACACAGATGCCATATTTG 58.278 37.500 0.00 0.00 0.00 2.32
4013 5518 5.245751 TGGAAAACACAGATGCCATATTTGT 59.754 36.000 0.00 0.00 0.00 2.83
4014 5519 6.165577 GGAAAACACAGATGCCATATTTGTT 58.834 36.000 0.00 0.00 0.00 2.83
4015 5520 6.311200 GGAAAACACAGATGCCATATTTGTTC 59.689 38.462 4.49 0.00 0.00 3.18
4016 5521 4.621068 ACACAGATGCCATATTTGTTCG 57.379 40.909 0.00 0.00 0.00 3.95
4017 5522 4.009675 ACACAGATGCCATATTTGTTCGT 58.990 39.130 0.00 0.00 0.00 3.85
4018 5523 4.094887 ACACAGATGCCATATTTGTTCGTC 59.905 41.667 0.00 0.00 0.00 4.20
4019 5524 4.333649 CACAGATGCCATATTTGTTCGTCT 59.666 41.667 0.00 0.00 0.00 4.18
4020 5525 4.943705 ACAGATGCCATATTTGTTCGTCTT 59.056 37.500 0.00 0.00 0.00 3.01
4021 5526 5.163723 ACAGATGCCATATTTGTTCGTCTTG 60.164 40.000 0.00 0.00 0.00 3.02
4022 5527 4.336433 AGATGCCATATTTGTTCGTCTTGG 59.664 41.667 0.00 0.00 0.00 3.61
4023 5528 3.680490 TGCCATATTTGTTCGTCTTGGA 58.320 40.909 0.00 0.00 0.00 3.53
4024 5529 4.269183 TGCCATATTTGTTCGTCTTGGAT 58.731 39.130 0.00 0.00 0.00 3.41
4025 5530 4.335315 TGCCATATTTGTTCGTCTTGGATC 59.665 41.667 0.00 0.00 0.00 3.36
4026 5531 4.576463 GCCATATTTGTTCGTCTTGGATCT 59.424 41.667 0.00 0.00 0.00 2.75
4027 5532 5.066505 GCCATATTTGTTCGTCTTGGATCTT 59.933 40.000 0.00 0.00 0.00 2.40
4028 5533 6.489675 CCATATTTGTTCGTCTTGGATCTTG 58.510 40.000 0.00 0.00 0.00 3.02
4029 5534 6.094048 CCATATTTGTTCGTCTTGGATCTTGT 59.906 38.462 0.00 0.00 0.00 3.16
4030 5535 4.811555 TTTGTTCGTCTTGGATCTTGTG 57.188 40.909 0.00 0.00 0.00 3.33
4031 5536 2.143122 TGTTCGTCTTGGATCTTGTGC 58.857 47.619 0.00 0.00 0.00 4.57
4032 5537 1.464997 GTTCGTCTTGGATCTTGTGCC 59.535 52.381 0.00 0.00 0.00 5.01
4033 5538 0.976641 TCGTCTTGGATCTTGTGCCT 59.023 50.000 0.00 0.00 0.00 4.75
4034 5539 1.347707 TCGTCTTGGATCTTGTGCCTT 59.652 47.619 0.00 0.00 0.00 4.35
4035 5540 1.734465 CGTCTTGGATCTTGTGCCTTC 59.266 52.381 0.00 0.00 0.00 3.46
4036 5541 2.087646 GTCTTGGATCTTGTGCCTTCC 58.912 52.381 0.00 0.00 0.00 3.46
4037 5542 1.988107 TCTTGGATCTTGTGCCTTCCT 59.012 47.619 0.00 0.00 0.00 3.36
4038 5543 2.376518 TCTTGGATCTTGTGCCTTCCTT 59.623 45.455 0.00 0.00 0.00 3.36
4039 5544 3.587061 TCTTGGATCTTGTGCCTTCCTTA 59.413 43.478 0.00 0.00 0.00 2.69
4040 5545 4.042809 TCTTGGATCTTGTGCCTTCCTTAA 59.957 41.667 0.00 0.00 0.00 1.85
4041 5546 3.686016 TGGATCTTGTGCCTTCCTTAAC 58.314 45.455 0.00 0.00 0.00 2.01
4042 5547 3.073798 TGGATCTTGTGCCTTCCTTAACA 59.926 43.478 0.00 0.00 0.00 2.41
4043 5548 4.079253 GGATCTTGTGCCTTCCTTAACAA 58.921 43.478 0.00 0.00 0.00 2.83
4044 5549 4.156739 GGATCTTGTGCCTTCCTTAACAAG 59.843 45.833 7.85 7.85 46.98 3.16
4045 5550 4.164843 TCTTGTGCCTTCCTTAACAAGT 57.835 40.909 12.59 0.00 46.14 3.16
4046 5551 4.532834 TCTTGTGCCTTCCTTAACAAGTT 58.467 39.130 12.59 0.00 46.14 2.66
4047 5552 5.686753 TCTTGTGCCTTCCTTAACAAGTTA 58.313 37.500 12.59 0.00 46.14 2.24
4048 5553 6.123651 TCTTGTGCCTTCCTTAACAAGTTAA 58.876 36.000 12.59 5.40 46.14 2.01
4049 5554 6.775629 TCTTGTGCCTTCCTTAACAAGTTAAT 59.224 34.615 12.59 0.00 46.14 1.40
4050 5555 6.569179 TGTGCCTTCCTTAACAAGTTAATC 57.431 37.500 5.92 0.00 34.86 1.75
4051 5556 6.303839 TGTGCCTTCCTTAACAAGTTAATCT 58.696 36.000 5.92 0.00 34.86 2.40
4052 5557 6.206634 TGTGCCTTCCTTAACAAGTTAATCTG 59.793 38.462 5.92 0.00 34.86 2.90
4053 5558 5.710099 TGCCTTCCTTAACAAGTTAATCTGG 59.290 40.000 5.92 4.90 34.86 3.86
4054 5559 5.710567 GCCTTCCTTAACAAGTTAATCTGGT 59.289 40.000 5.92 0.00 34.86 4.00
4055 5560 6.882678 GCCTTCCTTAACAAGTTAATCTGGTA 59.117 38.462 5.92 0.00 34.86 3.25
4056 5561 7.148289 GCCTTCCTTAACAAGTTAATCTGGTAC 60.148 40.741 5.92 0.00 34.86 3.34
4057 5562 8.101419 CCTTCCTTAACAAGTTAATCTGGTACT 58.899 37.037 5.92 0.00 34.86 2.73
4058 5563 9.503399 CTTCCTTAACAAGTTAATCTGGTACTT 57.497 33.333 5.92 0.00 34.86 2.24
4059 5564 9.856162 TTCCTTAACAAGTTAATCTGGTACTTT 57.144 29.630 5.92 0.00 34.86 2.66
4060 5565 9.280174 TCCTTAACAAGTTAATCTGGTACTTTG 57.720 33.333 5.92 0.00 34.86 2.77
4061 5566 9.063615 CCTTAACAAGTTAATCTGGTACTTTGT 57.936 33.333 5.92 0.00 34.86 2.83
4064 5569 6.735130 ACAAGTTAATCTGGTACTTTGTTGC 58.265 36.000 0.00 0.00 30.08 4.17
4065 5570 6.320164 ACAAGTTAATCTGGTACTTTGTTGCA 59.680 34.615 0.00 0.00 30.08 4.08
4066 5571 6.952773 AGTTAATCTGGTACTTTGTTGCAA 57.047 33.333 0.00 0.00 0.00 4.08
4067 5572 7.341445 AGTTAATCTGGTACTTTGTTGCAAA 57.659 32.000 0.00 0.00 0.00 3.68
4087 5592 8.969260 TGCAAACATACTATTTCAGATGATCT 57.031 30.769 0.00 0.00 0.00 2.75
4088 5593 8.833493 TGCAAACATACTATTTCAGATGATCTG 58.167 33.333 16.15 16.15 45.59 2.90
4089 5594 8.834465 GCAAACATACTATTTCAGATGATCTGT 58.166 33.333 20.82 5.86 44.58 3.41
4091 5596 9.553064 AAACATACTATTTCAGATGATCTGTCC 57.447 33.333 20.82 0.00 44.58 4.02
4092 5597 8.489676 ACATACTATTTCAGATGATCTGTCCT 57.510 34.615 20.82 9.73 44.58 3.85
4093 5598 8.932610 ACATACTATTTCAGATGATCTGTCCTT 58.067 33.333 20.82 8.33 44.58 3.36
4094 5599 9.775854 CATACTATTTCAGATGATCTGTCCTTT 57.224 33.333 20.82 6.43 44.58 3.11
4096 5601 8.503458 ACTATTTCAGATGATCTGTCCTTTTG 57.497 34.615 20.82 9.71 44.58 2.44
4097 5602 8.324306 ACTATTTCAGATGATCTGTCCTTTTGA 58.676 33.333 20.82 0.00 44.58 2.69
4098 5603 9.339850 CTATTTCAGATGATCTGTCCTTTTGAT 57.660 33.333 20.82 8.05 44.58 2.57
4099 5604 6.997239 TTCAGATGATCTGTCCTTTTGATG 57.003 37.500 20.82 0.00 44.58 3.07
4100 5605 6.058553 TCAGATGATCTGTCCTTTTGATGT 57.941 37.500 20.82 0.00 44.58 3.06
4101 5606 7.186570 TCAGATGATCTGTCCTTTTGATGTA 57.813 36.000 20.82 0.00 44.58 2.29
4102 5607 7.623630 TCAGATGATCTGTCCTTTTGATGTAA 58.376 34.615 20.82 0.00 44.58 2.41
4103 5608 8.270030 TCAGATGATCTGTCCTTTTGATGTAAT 58.730 33.333 20.82 0.00 44.58 1.89
4104 5609 9.551734 CAGATGATCTGTCCTTTTGATGTAATA 57.448 33.333 14.17 0.00 39.58 0.98
4108 5613 9.551734 TGATCTGTCCTTTTGATGTAATATCAG 57.448 33.333 0.00 0.00 0.00 2.90
4109 5614 7.792374 TCTGTCCTTTTGATGTAATATCAGC 57.208 36.000 0.00 0.00 0.00 4.26
4110 5615 6.767902 TCTGTCCTTTTGATGTAATATCAGCC 59.232 38.462 0.00 0.00 0.00 4.85
4111 5616 6.422333 TGTCCTTTTGATGTAATATCAGCCA 58.578 36.000 0.00 0.00 0.00 4.75
4112 5617 7.062322 TGTCCTTTTGATGTAATATCAGCCAT 58.938 34.615 0.00 0.00 0.00 4.40
4113 5618 8.217111 TGTCCTTTTGATGTAATATCAGCCATA 58.783 33.333 0.00 0.00 0.00 2.74
4114 5619 9.236006 GTCCTTTTGATGTAATATCAGCCATAT 57.764 33.333 0.00 0.00 0.00 1.78
4115 5620 9.234827 TCCTTTTGATGTAATATCAGCCATATG 57.765 33.333 0.00 0.00 0.00 1.78
4116 5621 9.017509 CCTTTTGATGTAATATCAGCCATATGT 57.982 33.333 1.24 0.00 0.00 2.29
4120 5625 8.565896 TGATGTAATATCAGCCATATGTTTCC 57.434 34.615 1.24 0.00 0.00 3.13
4121 5626 7.611467 TGATGTAATATCAGCCATATGTTTCCC 59.389 37.037 1.24 0.00 0.00 3.97
4122 5627 7.090319 TGTAATATCAGCCATATGTTTCCCT 57.910 36.000 1.24 0.00 0.00 4.20
4123 5628 8.213489 TGTAATATCAGCCATATGTTTCCCTA 57.787 34.615 1.24 0.00 0.00 3.53
4124 5629 8.835734 TGTAATATCAGCCATATGTTTCCCTAT 58.164 33.333 1.24 0.00 0.00 2.57
4125 5630 9.331282 GTAATATCAGCCATATGTTTCCCTATC 57.669 37.037 1.24 0.00 0.00 2.08
4126 5631 5.848286 ATCAGCCATATGTTTCCCTATCA 57.152 39.130 1.24 0.00 0.00 2.15
4127 5632 4.973168 TCAGCCATATGTTTCCCTATCAC 58.027 43.478 1.24 0.00 0.00 3.06
4128 5633 4.660303 TCAGCCATATGTTTCCCTATCACT 59.340 41.667 1.24 0.00 0.00 3.41
4129 5634 5.132648 TCAGCCATATGTTTCCCTATCACTT 59.867 40.000 1.24 0.00 0.00 3.16
4130 5635 5.240183 CAGCCATATGTTTCCCTATCACTTG 59.760 44.000 1.24 0.00 0.00 3.16
4131 5636 4.022849 GCCATATGTTTCCCTATCACTTGC 60.023 45.833 1.24 0.00 0.00 4.01
4132 5637 4.214119 CCATATGTTTCCCTATCACTTGCG 59.786 45.833 1.24 0.00 0.00 4.85
4133 5638 3.627395 ATGTTTCCCTATCACTTGCGA 57.373 42.857 0.00 0.00 0.00 5.10
4134 5639 2.695359 TGTTTCCCTATCACTTGCGAC 58.305 47.619 0.00 0.00 0.00 5.19
4135 5640 2.037902 TGTTTCCCTATCACTTGCGACA 59.962 45.455 0.00 0.00 0.00 4.35
4136 5641 3.071479 GTTTCCCTATCACTTGCGACAA 58.929 45.455 0.00 0.00 0.00 3.18
4137 5642 3.627395 TTCCCTATCACTTGCGACAAT 57.373 42.857 0.00 0.00 0.00 2.71
4138 5643 3.179443 TCCCTATCACTTGCGACAATC 57.821 47.619 0.00 0.00 0.00 2.67
4139 5644 2.499693 TCCCTATCACTTGCGACAATCA 59.500 45.455 0.00 0.00 0.00 2.57
4140 5645 3.134623 TCCCTATCACTTGCGACAATCAT 59.865 43.478 0.00 0.00 0.00 2.45
4141 5646 4.343814 TCCCTATCACTTGCGACAATCATA 59.656 41.667 0.00 0.00 0.00 2.15
4142 5647 5.012046 TCCCTATCACTTGCGACAATCATAT 59.988 40.000 0.00 0.00 0.00 1.78
4143 5648 5.702670 CCCTATCACTTGCGACAATCATATT 59.297 40.000 0.00 0.00 0.00 1.28
4144 5649 6.205464 CCCTATCACTTGCGACAATCATATTT 59.795 38.462 0.00 0.00 0.00 1.40
4145 5650 7.255242 CCCTATCACTTGCGACAATCATATTTT 60.255 37.037 0.00 0.00 0.00 1.82
4146 5651 8.131100 CCTATCACTTGCGACAATCATATTTTT 58.869 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.586082 CGTGGTTCAAGGGATAAAATCTTTTG 59.414 38.462 0.00 0.00 0.00 2.44
25 26 4.457949 ACACGTGGTTCAAGGGATAAAATC 59.542 41.667 21.57 0.00 0.00 2.17
49 50 6.968263 TGGTGAAAATGGTTCAGTATTTGA 57.032 33.333 0.00 0.00 0.00 2.69
57 58 3.251016 TCCCATGGTGAAAATGGTTCA 57.749 42.857 11.73 0.00 42.68 3.18
188 189 6.537453 TCTGGTTTGGTTTTCATTTTCTGA 57.463 33.333 0.00 0.00 0.00 3.27
223 226 0.030638 CCGTGTTTTTGGGCTCTGTG 59.969 55.000 0.00 0.00 0.00 3.66
232 241 3.553917 GGAAATCCACAACCGTGTTTTTG 59.446 43.478 0.00 0.00 41.93 2.44
233 242 3.431068 GGGAAATCCACAACCGTGTTTTT 60.431 43.478 1.22 0.00 41.93 1.94
240 249 3.389221 CAAAAAGGGAAATCCACAACCG 58.611 45.455 1.22 0.00 38.24 4.44
309 318 6.754209 ACATAGATGTGCTTCTACTCGAAAAG 59.246 38.462 0.00 0.00 40.03 2.27
315 324 9.026074 GTAAGAAACATAGATGTGCTTCTACTC 57.974 37.037 11.92 3.91 41.61 2.59
348 357 5.670341 GCGTTTCTCGTACAAGCACATATTT 60.670 40.000 0.00 0.00 42.13 1.40
354 363 0.856641 TGCGTTTCTCGTACAAGCAC 59.143 50.000 0.00 0.00 42.13 4.40
394 403 9.447040 CACATCTGTGCTTCTTCAAAATATATG 57.553 33.333 0.00 0.00 39.39 1.78
464 474 6.479095 TTTCTGTTTTTCAGTTTTTGCCTG 57.521 33.333 0.00 0.00 43.97 4.85
490 500 7.176589 TGGGTTTTAATGAGTTCTTTTGTGT 57.823 32.000 0.00 0.00 0.00 3.72
537 547 8.795513 TGCTCACTCATGATTTCATTCTTTTAA 58.204 29.630 0.00 0.00 33.61 1.52
615 625 0.606604 TCGTGGGAGCTTTGTAGTCC 59.393 55.000 0.00 0.00 0.00 3.85
617 627 2.367567 TCTTTCGTGGGAGCTTTGTAGT 59.632 45.455 0.00 0.00 0.00 2.73
623 633 2.304761 TGGTTATCTTTCGTGGGAGCTT 59.695 45.455 0.00 0.00 0.00 3.74
625 635 2.396590 TGGTTATCTTTCGTGGGAGC 57.603 50.000 0.00 0.00 0.00 4.70
629 639 5.646360 ACTAACCAATGGTTATCTTTCGTGG 59.354 40.000 23.50 11.91 45.58 4.94
647 657 7.334671 CCTAAGAGAATTTCAGACCAACTAACC 59.665 40.741 0.00 0.00 0.00 2.85
654 664 6.688073 AGAACCTAAGAGAATTTCAGACCA 57.312 37.500 0.00 0.00 0.00 4.02
660 670 9.320352 GGATGAAGTAGAACCTAAGAGAATTTC 57.680 37.037 0.00 0.00 0.00 2.17
701 711 4.815040 TCTTTCGCCGTTCAAAAACATA 57.185 36.364 0.00 0.00 34.93 2.29
703 713 3.489180 TTCTTTCGCCGTTCAAAAACA 57.511 38.095 0.00 0.00 34.93 2.83
705 715 4.099824 GTCTTTCTTTCGCCGTTCAAAAA 58.900 39.130 0.00 0.00 0.00 1.94
764 2223 5.393962 CCTGCTTACAAAAGAGATTTTCCG 58.606 41.667 0.00 0.00 34.37 4.30
925 2384 3.295386 TTTGGGATTGGAGGGGGCG 62.295 63.158 0.00 0.00 0.00 6.13
926 2385 1.685765 GTTTGGGATTGGAGGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
927 2386 1.001631 GGTTTGGGATTGGAGGGGG 59.998 63.158 0.00 0.00 0.00 5.40
928 2387 1.001631 GGGTTTGGGATTGGAGGGG 59.998 63.158 0.00 0.00 0.00 4.79
929 2388 1.001631 GGGGTTTGGGATTGGAGGG 59.998 63.158 0.00 0.00 0.00 4.30
930 2389 1.379843 CGGGGTTTGGGATTGGAGG 60.380 63.158 0.00 0.00 0.00 4.30
931 2390 1.379843 CCGGGGTTTGGGATTGGAG 60.380 63.158 0.00 0.00 0.00 3.86
932 2391 2.767352 CCGGGGTTTGGGATTGGA 59.233 61.111 0.00 0.00 0.00 3.53
1064 2532 3.690685 TACTGGGAAATGCGCCCCG 62.691 63.158 13.85 11.04 45.40 5.73
1085 2553 4.779733 GGGAGTGGAGGAGCGGGA 62.780 72.222 0.00 0.00 0.00 5.14
1331 2799 0.099968 GTAGCGGCATCGTGTGTCTA 59.900 55.000 1.45 0.00 38.89 2.59
1333 2801 1.445410 TGTAGCGGCATCGTGTGTC 60.445 57.895 1.45 0.00 38.89 3.67
1394 2862 4.214758 ACAAACAAAACTAGCCCGTATCAC 59.785 41.667 0.00 0.00 0.00 3.06
1398 2866 3.565063 GGAACAAACAAAACTAGCCCGTA 59.435 43.478 0.00 0.00 0.00 4.02
1591 3070 8.174422 GTCAAAACAACATTTAGCACATTTTGT 58.826 29.630 0.00 0.00 37.19 2.83
1592 3071 7.639461 GGTCAAAACAACATTTAGCACATTTTG 59.361 33.333 0.00 0.00 37.21 2.44
1633 3112 7.745620 AACGAAGGTTGAAGTCATCTTAATT 57.254 32.000 0.00 0.00 34.37 1.40
1634 3113 7.094762 GGAAACGAAGGTTGAAGTCATCTTAAT 60.095 37.037 0.00 0.00 36.25 1.40
1635 3114 6.204108 GGAAACGAAGGTTGAAGTCATCTTAA 59.796 38.462 0.00 0.00 36.25 1.85
1636 3115 5.699458 GGAAACGAAGGTTGAAGTCATCTTA 59.301 40.000 0.00 0.00 36.25 2.10
1654 3133 3.896648 AGCAGTAAACACATGGAAACG 57.103 42.857 0.00 0.00 0.00 3.60
1702 3188 4.156739 CCTTGACCTTGAGGAATTTACAGC 59.843 45.833 3.59 0.00 38.94 4.40
1727 3213 1.129251 TGGTAAGTTCTAGCGTCGTCG 59.871 52.381 0.00 0.00 40.37 5.12
1730 3216 2.782192 CGAATGGTAAGTTCTAGCGTCG 59.218 50.000 0.00 0.00 0.00 5.12
1733 3219 4.171005 TCAACGAATGGTAAGTTCTAGCG 58.829 43.478 0.00 0.00 0.00 4.26
1746 3232 5.172460 TGTCCATGCATATTCAACGAATG 57.828 39.130 0.00 0.00 33.95 2.67
1753 3239 4.948621 TGTGAACATGTCCATGCATATTCA 59.051 37.500 0.00 6.98 42.39 2.57
1802 3296 7.683704 GCATCTATTCAGCAAGAACATTCCAAT 60.684 37.037 0.00 0.00 39.49 3.16
2155 3649 3.157750 AGCTAAGGTATACTCCCTCCG 57.842 52.381 2.25 0.00 0.00 4.63
2168 3662 7.090173 TCGATGAAAAATTTCCAAAGCTAAGG 58.910 34.615 3.60 0.00 36.36 2.69
2222 3716 5.669904 TCCTTCCCATGACATCCTACAAATA 59.330 40.000 0.00 0.00 0.00 1.40
2272 3766 1.882623 GGTGGAGCAGGTTTTCTGAAG 59.117 52.381 0.00 0.00 46.18 3.02
2284 3778 2.659063 CGGAGATGGTGGTGGAGCA 61.659 63.158 0.00 0.00 36.23 4.26
2311 3805 2.150397 AAAGCTTGTACTTCGCGACT 57.850 45.000 9.15 0.00 0.00 4.18
2383 3877 4.097286 GCAGAAACTGGGTTGAACTGTAAA 59.903 41.667 0.00 0.00 30.87 2.01
2385 3879 3.211045 GCAGAAACTGGGTTGAACTGTA 58.789 45.455 0.00 0.00 30.87 2.74
2392 3886 1.110442 TGTTGGCAGAAACTGGGTTG 58.890 50.000 0.00 0.00 31.21 3.77
2544 4038 2.552031 GATCTCGGTCCTTGGCTAAAC 58.448 52.381 0.00 0.00 0.00 2.01
2627 4121 9.678260 AGCAAAGATTTCTGAACTGTAGATAAT 57.322 29.630 0.00 0.00 0.00 1.28
2679 4173 1.123077 AGAGGCATACGGATTGCTCA 58.877 50.000 6.48 0.00 40.03 4.26
2687 4181 6.436843 AATTAAGTCAAAAGAGGCATACGG 57.563 37.500 0.00 0.00 0.00 4.02
2735 4229 4.449743 GCACAACTTCAACAAATGCATCAT 59.550 37.500 0.00 0.00 0.00 2.45
2740 4234 3.000523 CAGTGCACAACTTCAACAAATGC 59.999 43.478 21.04 0.00 36.83 3.56
2750 4244 3.788227 TTATCCTCCAGTGCACAACTT 57.212 42.857 21.04 0.00 36.83 2.66
2757 4251 3.950395 AGAGCAATTTTATCCTCCAGTGC 59.050 43.478 0.00 0.00 0.00 4.40
2868 4364 8.266682 CCAGAAGACACGTTTTATCATATAACG 58.733 37.037 16.13 16.13 44.73 3.18
2885 4381 6.442541 TGTAAGGAAATAACCCAGAAGACA 57.557 37.500 0.00 0.00 0.00 3.41
2930 4426 4.757149 GTGCTTGTAGTCCAACATCTCTTT 59.243 41.667 0.00 0.00 0.00 2.52
2941 4437 6.677781 TGCTAATTAATGTGCTTGTAGTCC 57.322 37.500 12.26 0.00 0.00 3.85
2960 4456 9.515226 AGAAATAGAAACTTAAACACCATGCTA 57.485 29.630 0.00 0.00 0.00 3.49
3039 4535 4.543692 CATCAGCCTTCACAGTTTCTTTG 58.456 43.478 0.00 0.00 0.00 2.77
3047 4543 2.082231 CTTCACCATCAGCCTTCACAG 58.918 52.381 0.00 0.00 0.00 3.66
3074 4570 3.270877 GCCTGATCATTAACCTTCACGT 58.729 45.455 0.00 0.00 0.00 4.49
3197 4694 2.053627 GTTTCCGCATCTGCACTTTTG 58.946 47.619 2.72 0.00 42.21 2.44
3340 4844 7.043391 TGCTGAAGTCTTCGATTACAATTATCG 60.043 37.037 8.06 3.21 44.64 2.92
3395 4899 3.067320 GCTAATGCCCTCTGTTTCCATTC 59.933 47.826 0.00 0.00 0.00 2.67
3430 4934 3.943381 CAGCTGCTCAAGGATGATGTTTA 59.057 43.478 0.00 0.00 34.37 2.01
3449 4953 7.042051 TGACTCGTATTAAATAATGAAGCCAGC 60.042 37.037 0.00 0.00 0.00 4.85
3553 5057 3.394274 TGAACTGGGTCCAGAATCAGAAA 59.606 43.478 22.46 3.48 46.30 2.52
3555 5059 2.303022 GTGAACTGGGTCCAGAATCAGA 59.697 50.000 22.46 4.36 46.30 3.27
3716 5220 1.455849 CCTGGGCAACTGGTTCTCA 59.544 57.895 0.00 0.00 33.77 3.27
3717 5221 4.404691 CCTGGGCAACTGGTTCTC 57.595 61.111 0.00 0.00 33.77 2.87
3744 5248 4.081697 CCAGGTTGTCTGTTTTTGTTTCCT 60.082 41.667 0.00 0.00 41.83 3.36
3745 5249 4.180817 CCAGGTTGTCTGTTTTTGTTTCC 58.819 43.478 0.00 0.00 41.83 3.13
3747 5251 3.618752 GCCCAGGTTGTCTGTTTTTGTTT 60.619 43.478 0.00 0.00 41.83 2.83
3748 5252 2.093711 GCCCAGGTTGTCTGTTTTTGTT 60.094 45.455 0.00 0.00 41.83 2.83
3749 5253 1.480545 GCCCAGGTTGTCTGTTTTTGT 59.519 47.619 0.00 0.00 41.83 2.83
3750 5254 1.756538 AGCCCAGGTTGTCTGTTTTTG 59.243 47.619 0.00 0.00 41.83 2.44
3751 5255 1.756538 CAGCCCAGGTTGTCTGTTTTT 59.243 47.619 0.00 0.00 41.83 1.94
3752 5256 1.341976 ACAGCCCAGGTTGTCTGTTTT 60.342 47.619 0.00 0.00 41.83 2.43
3756 5260 0.396435 TACACAGCCCAGGTTGTCTG 59.604 55.000 2.84 0.00 43.00 3.51
3759 5263 0.771127 ATGTACACAGCCCAGGTTGT 59.229 50.000 0.00 0.00 40.10 3.32
3775 5279 2.619849 CCAGTCAATGCTTCAGGGATGT 60.620 50.000 0.00 0.00 0.00 3.06
3777 5281 1.637553 ACCAGTCAATGCTTCAGGGAT 59.362 47.619 0.00 0.00 0.00 3.85
3785 5289 2.568956 TCTCTTGCTACCAGTCAATGCT 59.431 45.455 0.00 0.00 0.00 3.79
3792 5296 4.621747 CGGAAGAATTCTCTTGCTACCAGT 60.622 45.833 8.78 0.00 45.29 4.00
3793 5297 3.868077 CGGAAGAATTCTCTTGCTACCAG 59.132 47.826 8.78 0.00 45.29 4.00
3794 5298 3.260884 ACGGAAGAATTCTCTTGCTACCA 59.739 43.478 8.78 0.00 45.29 3.25
3795 5299 3.863041 ACGGAAGAATTCTCTTGCTACC 58.137 45.455 8.78 3.71 45.29 3.18
3796 5300 4.691216 ACAACGGAAGAATTCTCTTGCTAC 59.309 41.667 8.78 0.00 45.29 3.58
3797 5301 4.894784 ACAACGGAAGAATTCTCTTGCTA 58.105 39.130 8.78 0.00 45.29 3.49
3798 5302 3.744660 ACAACGGAAGAATTCTCTTGCT 58.255 40.909 8.78 0.00 45.29 3.91
3799 5303 5.803020 ATACAACGGAAGAATTCTCTTGC 57.197 39.130 8.78 0.00 46.56 4.01
3802 5306 9.720769 TCTTTTTATACAACGGAAGAATTCTCT 57.279 29.630 8.78 0.00 46.56 3.10
3803 5307 9.974750 CTCTTTTTATACAACGGAAGAATTCTC 57.025 33.333 8.78 2.54 46.56 2.87
3804 5308 9.720769 TCTCTTTTTATACAACGGAAGAATTCT 57.279 29.630 0.88 0.88 46.56 2.40
3815 5319 5.084055 CCGGCGTTTCTCTTTTTATACAAC 58.916 41.667 6.01 0.00 0.00 3.32
3820 5324 2.156098 TGCCGGCGTTTCTCTTTTTAT 58.844 42.857 23.90 0.00 0.00 1.40
3823 5327 0.030235 GTTGCCGGCGTTTCTCTTTT 59.970 50.000 23.90 0.00 0.00 2.27
3836 5340 3.326889 CTGATGCCGTTGGTTGCCG 62.327 63.158 0.00 0.00 0.00 5.69
3846 5350 0.458889 CCATGTTTTGCCTGATGCCG 60.459 55.000 0.00 0.00 40.16 5.69
3848 5352 1.820519 TCTCCATGTTTTGCCTGATGC 59.179 47.619 0.00 0.00 41.77 3.91
3854 5358 3.940209 TGATGTTCTCCATGTTTTGCC 57.060 42.857 0.00 0.00 32.56 4.52
3855 5359 4.240096 CCTTGATGTTCTCCATGTTTTGC 58.760 43.478 0.00 0.00 32.56 3.68
3856 5360 4.240096 GCCTTGATGTTCTCCATGTTTTG 58.760 43.478 0.00 0.00 32.56 2.44
3857 5361 3.896888 TGCCTTGATGTTCTCCATGTTTT 59.103 39.130 0.00 0.00 32.56 2.43
3858 5362 3.499338 TGCCTTGATGTTCTCCATGTTT 58.501 40.909 0.00 0.00 32.56 2.83
3859 5363 3.159213 TGCCTTGATGTTCTCCATGTT 57.841 42.857 0.00 0.00 32.56 2.71
3861 5365 3.021695 ACATGCCTTGATGTTCTCCATG 58.978 45.455 0.00 0.00 32.38 3.66
3862 5366 3.285484 GACATGCCTTGATGTTCTCCAT 58.715 45.455 0.00 0.00 36.67 3.41
3867 5371 5.063180 TCATTTGACATGCCTTGATGTTC 57.937 39.130 0.00 0.00 36.67 3.18
3901 5405 8.305317 GGGTGATCCAGTAGTTACTTCATATAC 58.695 40.741 0.00 0.00 33.46 1.47
3902 5406 8.232412 AGGGTGATCCAGTAGTTACTTCATATA 58.768 37.037 0.00 0.00 38.24 0.86
3925 5429 2.438868 GCTGTGGCTTTTGTAAAGGG 57.561 50.000 1.78 0.00 35.22 3.95
3946 5451 8.061920 CCCTTAGGAGATAGGAAAAGGAATTTT 58.938 37.037 0.00 0.00 36.42 1.82
3947 5452 7.186594 ACCCTTAGGAGATAGGAAAAGGAATTT 59.813 37.037 0.00 0.00 36.42 1.82
3948 5453 6.683340 ACCCTTAGGAGATAGGAAAAGGAATT 59.317 38.462 0.00 0.00 36.42 2.17
3949 5454 6.221089 ACCCTTAGGAGATAGGAAAAGGAAT 58.779 40.000 0.00 0.00 36.42 3.01
3950 5455 5.610791 ACCCTTAGGAGATAGGAAAAGGAA 58.389 41.667 0.00 0.00 36.42 3.36
3951 5456 5.236425 ACCCTTAGGAGATAGGAAAAGGA 57.764 43.478 0.00 0.00 36.42 3.36
3952 5457 6.144625 AGTACCCTTAGGAGATAGGAAAAGG 58.855 44.000 0.00 0.00 36.73 3.11
3953 5458 7.344871 TGAAGTACCCTTAGGAGATAGGAAAAG 59.655 40.741 0.00 0.00 36.73 2.27
3954 5459 7.194050 TGAAGTACCCTTAGGAGATAGGAAAA 58.806 38.462 0.00 0.00 36.73 2.29
3955 5460 6.748969 TGAAGTACCCTTAGGAGATAGGAAA 58.251 40.000 0.00 0.00 36.73 3.13
3956 5461 6.351317 TGAAGTACCCTTAGGAGATAGGAA 57.649 41.667 0.00 0.00 36.73 3.36
3957 5462 6.547396 ATGAAGTACCCTTAGGAGATAGGA 57.453 41.667 0.00 0.00 36.73 2.94
3958 5463 7.071321 ACAAATGAAGTACCCTTAGGAGATAGG 59.929 40.741 0.00 0.00 36.73 2.57
3959 5464 7.928706 CACAAATGAAGTACCCTTAGGAGATAG 59.071 40.741 0.00 0.00 36.73 2.08
3960 5465 7.147549 CCACAAATGAAGTACCCTTAGGAGATA 60.148 40.741 0.00 0.00 36.73 1.98
3961 5466 6.353082 CCACAAATGAAGTACCCTTAGGAGAT 60.353 42.308 0.00 0.00 36.73 2.75
3962 5467 5.045869 CCACAAATGAAGTACCCTTAGGAGA 60.046 44.000 0.00 0.00 36.73 3.71
3963 5468 5.045869 TCCACAAATGAAGTACCCTTAGGAG 60.046 44.000 0.00 0.00 36.73 3.69
3964 5469 4.847512 TCCACAAATGAAGTACCCTTAGGA 59.152 41.667 0.00 0.00 36.73 2.94
3965 5470 5.174037 TCCACAAATGAAGTACCCTTAGG 57.826 43.478 0.00 0.00 40.04 2.69
3966 5471 6.095440 CCATTCCACAAATGAAGTACCCTTAG 59.905 42.308 0.00 0.00 46.54 2.18
3967 5472 5.949354 CCATTCCACAAATGAAGTACCCTTA 59.051 40.000 0.00 0.00 46.54 2.69
3968 5473 4.772100 CCATTCCACAAATGAAGTACCCTT 59.228 41.667 0.00 0.00 46.54 3.95
3969 5474 4.044065 TCCATTCCACAAATGAAGTACCCT 59.956 41.667 0.00 0.00 46.54 4.34
3970 5475 4.340617 TCCATTCCACAAATGAAGTACCC 58.659 43.478 0.00 0.00 46.54 3.69
3971 5476 5.975693 TTCCATTCCACAAATGAAGTACC 57.024 39.130 0.00 0.00 46.54 3.34
3972 5477 7.169140 GTGTTTTCCATTCCACAAATGAAGTAC 59.831 37.037 0.00 0.00 46.54 2.73
3973 5478 7.147828 TGTGTTTTCCATTCCACAAATGAAGTA 60.148 33.333 0.00 0.00 46.54 2.24
3974 5479 6.048509 GTGTTTTCCATTCCACAAATGAAGT 58.951 36.000 0.00 0.00 46.54 3.01
3975 5480 6.047870 TGTGTTTTCCATTCCACAAATGAAG 58.952 36.000 0.00 0.00 46.54 3.02
3976 5481 5.982356 TGTGTTTTCCATTCCACAAATGAA 58.018 33.333 0.00 0.00 46.54 2.57
3977 5482 5.362143 TCTGTGTTTTCCATTCCACAAATGA 59.638 36.000 0.00 0.00 46.54 2.57
3978 5483 5.599732 TCTGTGTTTTCCATTCCACAAATG 58.400 37.500 0.00 0.00 43.77 2.32
3979 5484 5.867903 TCTGTGTTTTCCATTCCACAAAT 57.132 34.783 0.00 0.00 37.37 2.32
3980 5485 5.599732 CATCTGTGTTTTCCATTCCACAAA 58.400 37.500 0.00 0.00 37.37 2.83
3981 5486 4.501229 GCATCTGTGTTTTCCATTCCACAA 60.501 41.667 0.00 0.00 37.37 3.33
3982 5487 3.005684 GCATCTGTGTTTTCCATTCCACA 59.994 43.478 0.00 0.00 36.47 4.17
3983 5488 3.578688 GCATCTGTGTTTTCCATTCCAC 58.421 45.455 0.00 0.00 0.00 4.02
3984 5489 2.562298 GGCATCTGTGTTTTCCATTCCA 59.438 45.455 0.00 0.00 0.00 3.53
3985 5490 2.562298 TGGCATCTGTGTTTTCCATTCC 59.438 45.455 0.00 0.00 0.00 3.01
3986 5491 3.940209 TGGCATCTGTGTTTTCCATTC 57.060 42.857 0.00 0.00 0.00 2.67
3987 5492 6.549433 AATATGGCATCTGTGTTTTCCATT 57.451 33.333 1.65 0.00 35.99 3.16
3988 5493 6.070653 ACAAATATGGCATCTGTGTTTTCCAT 60.071 34.615 1.65 0.00 37.92 3.41
3989 5494 5.245751 ACAAATATGGCATCTGTGTTTTCCA 59.754 36.000 1.65 0.00 0.00 3.53
3990 5495 5.723295 ACAAATATGGCATCTGTGTTTTCC 58.277 37.500 1.65 0.00 0.00 3.13
3991 5496 6.033831 CGAACAAATATGGCATCTGTGTTTTC 59.966 38.462 18.96 9.39 0.00 2.29
3992 5497 5.863397 CGAACAAATATGGCATCTGTGTTTT 59.137 36.000 18.96 2.22 0.00 2.43
3993 5498 5.048083 ACGAACAAATATGGCATCTGTGTTT 60.048 36.000 18.96 5.39 0.00 2.83
3994 5499 4.458989 ACGAACAAATATGGCATCTGTGTT 59.541 37.500 18.24 18.24 0.00 3.32
3995 5500 4.009675 ACGAACAAATATGGCATCTGTGT 58.990 39.130 1.65 2.47 0.00 3.72
3996 5501 4.333649 AGACGAACAAATATGGCATCTGTG 59.666 41.667 1.65 1.69 0.00 3.66
3997 5502 4.517285 AGACGAACAAATATGGCATCTGT 58.483 39.130 1.65 3.47 0.00 3.41
3998 5503 5.268544 CAAGACGAACAAATATGGCATCTG 58.731 41.667 1.65 2.77 0.00 2.90
3999 5504 4.336433 CCAAGACGAACAAATATGGCATCT 59.664 41.667 1.65 0.00 0.00 2.90
4000 5505 4.335315 TCCAAGACGAACAAATATGGCATC 59.665 41.667 1.65 0.00 0.00 3.91
4001 5506 4.269183 TCCAAGACGAACAAATATGGCAT 58.731 39.130 4.88 4.88 0.00 4.40
4002 5507 3.680490 TCCAAGACGAACAAATATGGCA 58.320 40.909 0.00 0.00 0.00 4.92
4003 5508 4.576463 AGATCCAAGACGAACAAATATGGC 59.424 41.667 0.00 0.00 0.00 4.40
4004 5509 6.094048 ACAAGATCCAAGACGAACAAATATGG 59.906 38.462 0.00 0.00 0.00 2.74
4005 5510 6.963242 CACAAGATCCAAGACGAACAAATATG 59.037 38.462 0.00 0.00 0.00 1.78
4006 5511 6.403636 GCACAAGATCCAAGACGAACAAATAT 60.404 38.462 0.00 0.00 0.00 1.28
4007 5512 5.106712 GCACAAGATCCAAGACGAACAAATA 60.107 40.000 0.00 0.00 0.00 1.40
4008 5513 4.320494 GCACAAGATCCAAGACGAACAAAT 60.320 41.667 0.00 0.00 0.00 2.32
4009 5514 3.003275 GCACAAGATCCAAGACGAACAAA 59.997 43.478 0.00 0.00 0.00 2.83
4010 5515 2.548057 GCACAAGATCCAAGACGAACAA 59.452 45.455 0.00 0.00 0.00 2.83
4011 5516 2.143122 GCACAAGATCCAAGACGAACA 58.857 47.619 0.00 0.00 0.00 3.18
4012 5517 1.464997 GGCACAAGATCCAAGACGAAC 59.535 52.381 0.00 0.00 0.00 3.95
4013 5518 1.347707 AGGCACAAGATCCAAGACGAA 59.652 47.619 0.00 0.00 0.00 3.85
4014 5519 0.976641 AGGCACAAGATCCAAGACGA 59.023 50.000 0.00 0.00 0.00 4.20
4015 5520 1.734465 GAAGGCACAAGATCCAAGACG 59.266 52.381 0.00 0.00 0.00 4.18
4016 5521 2.087646 GGAAGGCACAAGATCCAAGAC 58.912 52.381 0.00 0.00 32.08 3.01
4017 5522 1.988107 AGGAAGGCACAAGATCCAAGA 59.012 47.619 0.00 0.00 34.30 3.02
4018 5523 2.503895 AGGAAGGCACAAGATCCAAG 57.496 50.000 0.00 0.00 34.30 3.61
4019 5524 2.978156 AAGGAAGGCACAAGATCCAA 57.022 45.000 0.00 0.00 34.30 3.53
4020 5525 3.073798 TGTTAAGGAAGGCACAAGATCCA 59.926 43.478 0.00 0.00 34.30 3.41
4021 5526 3.686016 TGTTAAGGAAGGCACAAGATCC 58.314 45.455 0.00 0.00 0.00 3.36
4022 5527 4.762251 ACTTGTTAAGGAAGGCACAAGATC 59.238 41.667 15.87 0.00 46.08 2.75
4023 5528 4.729868 ACTTGTTAAGGAAGGCACAAGAT 58.270 39.130 15.87 0.56 46.08 2.40
4024 5529 4.164843 ACTTGTTAAGGAAGGCACAAGA 57.835 40.909 15.87 0.00 46.08 3.02
4026 5531 6.775629 AGATTAACTTGTTAAGGAAGGCACAA 59.224 34.615 10.97 0.00 0.00 3.33
4027 5532 6.206634 CAGATTAACTTGTTAAGGAAGGCACA 59.793 38.462 10.97 0.00 0.00 4.57
4028 5533 6.349363 CCAGATTAACTTGTTAAGGAAGGCAC 60.349 42.308 10.97 0.00 0.00 5.01
4029 5534 5.710099 CCAGATTAACTTGTTAAGGAAGGCA 59.290 40.000 10.97 0.00 0.00 4.75
4030 5535 5.710567 ACCAGATTAACTTGTTAAGGAAGGC 59.289 40.000 13.44 0.00 0.00 4.35
4031 5536 8.101419 AGTACCAGATTAACTTGTTAAGGAAGG 58.899 37.037 13.44 12.45 0.00 3.46
4032 5537 9.503399 AAGTACCAGATTAACTTGTTAAGGAAG 57.497 33.333 13.44 6.09 32.38 3.46
4033 5538 9.856162 AAAGTACCAGATTAACTTGTTAAGGAA 57.144 29.630 13.44 0.00 33.85 3.36
4034 5539 9.280174 CAAAGTACCAGATTAACTTGTTAAGGA 57.720 33.333 13.44 0.00 33.85 3.36
4035 5540 9.063615 ACAAAGTACCAGATTAACTTGTTAAGG 57.936 33.333 10.97 9.29 33.85 2.69
4038 5543 8.347035 GCAACAAAGTACCAGATTAACTTGTTA 58.653 33.333 0.00 0.00 33.85 2.41
4039 5544 7.147983 TGCAACAAAGTACCAGATTAACTTGTT 60.148 33.333 0.00 0.00 33.85 2.83
4040 5545 6.320164 TGCAACAAAGTACCAGATTAACTTGT 59.680 34.615 0.00 0.00 33.85 3.16
4041 5546 6.734137 TGCAACAAAGTACCAGATTAACTTG 58.266 36.000 0.00 0.00 33.85 3.16
4042 5547 6.952773 TGCAACAAAGTACCAGATTAACTT 57.047 33.333 0.00 0.00 35.01 2.66
4043 5548 6.952773 TTGCAACAAAGTACCAGATTAACT 57.047 33.333 0.00 0.00 0.00 2.24
4044 5549 6.975772 TGTTTGCAACAAAGTACCAGATTAAC 59.024 34.615 0.00 0.00 38.72 2.01
4045 5550 7.101652 TGTTTGCAACAAAGTACCAGATTAA 57.898 32.000 0.00 0.00 38.72 1.40
4046 5551 6.701145 TGTTTGCAACAAAGTACCAGATTA 57.299 33.333 0.00 0.00 38.72 1.75
4047 5552 5.590530 TGTTTGCAACAAAGTACCAGATT 57.409 34.783 0.00 0.00 38.72 2.40
4048 5553 5.789643 ATGTTTGCAACAAAGTACCAGAT 57.210 34.783 0.00 0.00 45.86 2.90
4049 5554 5.825679 AGTATGTTTGCAACAAAGTACCAGA 59.174 36.000 0.00 0.00 45.86 3.86
4050 5555 6.072112 AGTATGTTTGCAACAAAGTACCAG 57.928 37.500 0.00 0.00 45.86 4.00
4051 5556 7.753309 ATAGTATGTTTGCAACAAAGTACCA 57.247 32.000 0.00 0.00 45.86 3.25
4052 5557 9.124807 GAAATAGTATGTTTGCAACAAAGTACC 57.875 33.333 0.00 0.00 45.86 3.34
4053 5558 9.672086 TGAAATAGTATGTTTGCAACAAAGTAC 57.328 29.630 0.00 0.00 45.86 2.73
4054 5559 9.891828 CTGAAATAGTATGTTTGCAACAAAGTA 57.108 29.630 0.00 0.00 45.86 2.24
4055 5560 8.629158 TCTGAAATAGTATGTTTGCAACAAAGT 58.371 29.630 0.00 0.00 45.86 2.66
4056 5561 9.630098 ATCTGAAATAGTATGTTTGCAACAAAG 57.370 29.630 0.00 0.00 45.86 2.77
4057 5562 9.409312 CATCTGAAATAGTATGTTTGCAACAAA 57.591 29.630 0.00 0.00 45.86 2.83
4058 5563 8.791675 TCATCTGAAATAGTATGTTTGCAACAA 58.208 29.630 0.00 0.00 45.86 2.83
4059 5564 8.334263 TCATCTGAAATAGTATGTTTGCAACA 57.666 30.769 0.00 0.88 46.94 3.33
4060 5565 9.443283 GATCATCTGAAATAGTATGTTTGCAAC 57.557 33.333 0.00 0.00 0.00 4.17
4061 5566 9.399797 AGATCATCTGAAATAGTATGTTTGCAA 57.600 29.630 0.00 0.00 0.00 4.08
4062 5567 8.969260 AGATCATCTGAAATAGTATGTTTGCA 57.031 30.769 0.00 0.00 0.00 4.08
4082 5587 9.551734 CTGATATTACATCAAAAGGACAGATCA 57.448 33.333 0.00 0.00 0.00 2.92
4083 5588 8.502387 GCTGATATTACATCAAAAGGACAGATC 58.498 37.037 0.00 0.00 0.00 2.75
4084 5589 7.446625 GGCTGATATTACATCAAAAGGACAGAT 59.553 37.037 0.00 0.00 0.00 2.90
4085 5590 6.767902 GGCTGATATTACATCAAAAGGACAGA 59.232 38.462 0.00 0.00 0.00 3.41
4086 5591 6.543465 TGGCTGATATTACATCAAAAGGACAG 59.457 38.462 0.00 0.00 0.00 3.51
4087 5592 6.422333 TGGCTGATATTACATCAAAAGGACA 58.578 36.000 0.00 0.00 0.00 4.02
4088 5593 6.942532 TGGCTGATATTACATCAAAAGGAC 57.057 37.500 0.00 0.00 0.00 3.85
4089 5594 9.234827 CATATGGCTGATATTACATCAAAAGGA 57.765 33.333 0.00 0.00 0.00 3.36
4090 5595 9.017509 ACATATGGCTGATATTACATCAAAAGG 57.982 33.333 7.80 0.00 0.00 3.11
4094 5599 9.013229 GGAAACATATGGCTGATATTACATCAA 57.987 33.333 7.80 0.00 0.00 2.57
4095 5600 7.611467 GGGAAACATATGGCTGATATTACATCA 59.389 37.037 7.80 0.00 0.00 3.07
4096 5601 7.831193 AGGGAAACATATGGCTGATATTACATC 59.169 37.037 7.80 0.00 0.00 3.06
4097 5602 7.702785 AGGGAAACATATGGCTGATATTACAT 58.297 34.615 7.80 0.00 0.00 2.29
4098 5603 7.090319 AGGGAAACATATGGCTGATATTACA 57.910 36.000 7.80 0.00 0.00 2.41
4099 5604 9.331282 GATAGGGAAACATATGGCTGATATTAC 57.669 37.037 7.80 0.00 37.46 1.89
4100 5605 9.056799 TGATAGGGAAACATATGGCTGATATTA 57.943 33.333 7.80 0.00 37.46 0.98
4101 5606 7.831193 GTGATAGGGAAACATATGGCTGATATT 59.169 37.037 7.80 0.00 37.46 1.28
4102 5607 7.183475 AGTGATAGGGAAACATATGGCTGATAT 59.817 37.037 7.80 0.00 37.46 1.63
4103 5608 6.501805 AGTGATAGGGAAACATATGGCTGATA 59.498 38.462 7.80 0.00 37.46 2.15
4104 5609 5.311649 AGTGATAGGGAAACATATGGCTGAT 59.688 40.000 7.80 0.00 37.46 2.90
4105 5610 4.660303 AGTGATAGGGAAACATATGGCTGA 59.340 41.667 7.80 0.00 37.46 4.26
4106 5611 4.978099 AGTGATAGGGAAACATATGGCTG 58.022 43.478 7.80 0.00 37.46 4.85
4107 5612 5.380043 CAAGTGATAGGGAAACATATGGCT 58.620 41.667 7.80 0.00 37.46 4.75
4108 5613 4.022849 GCAAGTGATAGGGAAACATATGGC 60.023 45.833 7.80 0.00 37.46 4.40
4109 5614 4.214119 CGCAAGTGATAGGGAAACATATGG 59.786 45.833 7.80 0.00 37.46 2.74
4110 5615 5.050091 GTCGCAAGTGATAGGGAAACATATG 60.050 44.000 0.00 0.00 36.50 1.78
4111 5616 5.057149 GTCGCAAGTGATAGGGAAACATAT 58.943 41.667 0.00 0.00 38.31 1.78
4112 5617 4.081365 TGTCGCAAGTGATAGGGAAACATA 60.081 41.667 0.00 0.00 39.48 2.29
4113 5618 3.270877 GTCGCAAGTGATAGGGAAACAT 58.729 45.455 0.00 0.00 39.48 2.71
4114 5619 2.037902 TGTCGCAAGTGATAGGGAAACA 59.962 45.455 0.00 0.00 39.48 2.83
4115 5620 2.695359 TGTCGCAAGTGATAGGGAAAC 58.305 47.619 0.00 0.00 39.48 2.78
4116 5621 3.410631 TTGTCGCAAGTGATAGGGAAA 57.589 42.857 0.00 0.00 39.48 3.13
4117 5622 3.055458 TGATTGTCGCAAGTGATAGGGAA 60.055 43.478 0.00 0.00 39.48 3.97
4118 5623 2.499693 TGATTGTCGCAAGTGATAGGGA 59.500 45.455 0.00 0.00 39.48 4.20
4119 5624 2.905075 TGATTGTCGCAAGTGATAGGG 58.095 47.619 0.00 0.00 39.48 3.53
4120 5625 6.791887 AATATGATTGTCGCAAGTGATAGG 57.208 37.500 0.00 0.00 39.48 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.