Multiple sequence alignment - TraesCS2D01G447200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G447200 chr2D 100.000 2324 0 0 1 2324 557163550 557165873 0.000000e+00 4292.0
1 TraesCS2D01G447200 chr2D 88.879 1106 57 36 622 1705 557140217 557141278 0.000000e+00 1301.0
2 TraesCS2D01G447200 chr2D 79.412 238 15 17 358 562 557139867 557140103 1.120000e-28 137.0
3 TraesCS2D01G447200 chr2B 89.465 1870 129 39 458 2322 664385432 664387238 0.000000e+00 2300.0
4 TraesCS2D01G447200 chr2B 89.150 1705 110 35 633 2312 664382240 664383894 0.000000e+00 2054.0
5 TraesCS2D01G447200 chr2B 88.392 1611 107 44 418 1985 664358831 664360404 0.000000e+00 1866.0
6 TraesCS2D01G447200 chr2B 85.278 360 22 11 1 338 664384874 664385224 2.210000e-90 342.0
7 TraesCS2D01G447200 chr2B 81.735 219 12 16 357 548 664381877 664382094 8.600000e-35 158.0
8 TraesCS2D01G447200 chr2A 83.905 1311 91 64 369 1611 697071812 697073070 0.000000e+00 1142.0
9 TraesCS2D01G447200 chr2A 92.661 218 16 0 3 220 667009581 667009798 4.820000e-82 315.0
10 TraesCS2D01G447200 chr2A 91.875 160 13 0 1616 1775 697074430 697074589 8.360000e-55 224.0
11 TraesCS2D01G447200 chr2A 89.655 87 5 2 438 524 697071737 697071819 8.780000e-20 108.0
12 TraesCS2D01G447200 chr5B 90.455 220 20 1 1 220 548688350 548688132 2.920000e-74 289.0
13 TraesCS2D01G447200 chr5B 88.679 53 6 0 168 220 470515550 470515498 5.360000e-07 65.8
14 TraesCS2D01G447200 chr6B 92.271 207 8 3 25 223 565396624 565396418 1.050000e-73 287.0
15 TraesCS2D01G447200 chr5D 87.727 220 27 0 1 220 449303772 449303991 8.240000e-65 257.0
16 TraesCS2D01G447200 chr6D 98.507 67 1 0 70 136 379051797 379051731 4.060000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G447200 chr2D 557163550 557165873 2323 False 4292.000000 4292 100.000000 1 2324 1 chr2D.!!$F1 2323
1 TraesCS2D01G447200 chr2D 557139867 557141278 1411 False 719.000000 1301 84.145500 358 1705 2 chr2D.!!$F2 1347
2 TraesCS2D01G447200 chr2B 664358831 664360404 1573 False 1866.000000 1866 88.392000 418 1985 1 chr2B.!!$F1 1567
3 TraesCS2D01G447200 chr2B 664381877 664387238 5361 False 1213.500000 2300 86.407000 1 2322 4 chr2B.!!$F2 2321
4 TraesCS2D01G447200 chr2A 697071737 697074589 2852 False 491.333333 1142 88.478333 369 1775 3 chr2A.!!$F2 1406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 823 0.031178 CCTGCTGTTCAAAGCCACAC 59.969 55.0 0.0 0.0 42.83 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 6950 0.106519 GTATGGGTGATTGGGCAGCT 60.107 55.0 0.0 0.0 36.56 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.307108 TCGATGGACACACGGCCA 61.307 61.111 2.24 0.00 38.78 5.36
18 19 3.118454 CGATGGACACACGGCCAC 61.118 66.667 2.24 0.00 36.92 5.01
19 20 2.746277 GATGGACACACGGCCACC 60.746 66.667 2.24 0.00 36.92 4.61
33 34 4.101448 CACCGAGGAAGCCCCCAG 62.101 72.222 0.00 0.00 34.66 4.45
52 53 4.520846 CGCCACGCCGCTTTCATC 62.521 66.667 0.00 0.00 0.00 2.92
53 54 4.179579 GCCACGCCGCTTTCATCC 62.180 66.667 0.00 0.00 0.00 3.51
54 55 2.436646 CCACGCCGCTTTCATCCT 60.437 61.111 0.00 0.00 0.00 3.24
55 56 1.153449 CCACGCCGCTTTCATCCTA 60.153 57.895 0.00 0.00 0.00 2.94
56 57 0.742990 CCACGCCGCTTTCATCCTAA 60.743 55.000 0.00 0.00 0.00 2.69
57 58 1.083489 CACGCCGCTTTCATCCTAAA 58.917 50.000 0.00 0.00 0.00 1.85
58 59 1.466950 CACGCCGCTTTCATCCTAAAA 59.533 47.619 0.00 0.00 0.00 1.52
59 60 1.737793 ACGCCGCTTTCATCCTAAAAG 59.262 47.619 0.00 0.00 36.91 2.27
61 62 2.223044 CGCCGCTTTCATCCTAAAAGAC 60.223 50.000 0.03 0.00 36.09 3.01
62 63 2.097629 GCCGCTTTCATCCTAAAAGACC 59.902 50.000 0.03 0.00 36.09 3.85
63 64 3.343617 CCGCTTTCATCCTAAAAGACCA 58.656 45.455 0.03 0.00 36.09 4.02
64 65 3.375299 CCGCTTTCATCCTAAAAGACCAG 59.625 47.826 0.03 0.00 36.09 4.00
65 66 4.253685 CGCTTTCATCCTAAAAGACCAGA 58.746 43.478 0.03 0.00 36.09 3.86
66 67 4.695455 CGCTTTCATCCTAAAAGACCAGAA 59.305 41.667 0.03 0.00 36.09 3.02
67 68 5.181245 CGCTTTCATCCTAAAAGACCAGAAA 59.819 40.000 0.03 0.00 36.09 2.52
68 69 6.616017 GCTTTCATCCTAAAAGACCAGAAAG 58.384 40.000 0.00 0.00 41.99 2.62
70 71 4.589908 TCATCCTAAAAGACCAGAAAGCC 58.410 43.478 0.00 0.00 0.00 4.35
74 75 2.452600 AAAAGACCAGAAAGCCCACA 57.547 45.000 0.00 0.00 0.00 4.17
75 76 2.452600 AAAGACCAGAAAGCCCACAA 57.547 45.000 0.00 0.00 0.00 3.33
76 77 1.692411 AAGACCAGAAAGCCCACAAC 58.308 50.000 0.00 0.00 0.00 3.32
77 78 0.550914 AGACCAGAAAGCCCACAACA 59.449 50.000 0.00 0.00 0.00 3.33
78 79 0.668535 GACCAGAAAGCCCACAACAC 59.331 55.000 0.00 0.00 0.00 3.32
79 80 0.258774 ACCAGAAAGCCCACAACACT 59.741 50.000 0.00 0.00 0.00 3.55
80 81 0.670162 CCAGAAAGCCCACAACACTG 59.330 55.000 0.00 0.00 0.00 3.66
81 82 0.670162 CAGAAAGCCCACAACACTGG 59.330 55.000 0.00 0.00 0.00 4.00
88 89 3.494850 CCACAACACTGGGACACTT 57.505 52.632 0.00 0.00 0.00 3.16
89 90 2.631160 CCACAACACTGGGACACTTA 57.369 50.000 0.00 0.00 0.00 2.24
90 91 2.218603 CCACAACACTGGGACACTTAC 58.781 52.381 0.00 0.00 0.00 2.34
91 92 2.420827 CCACAACACTGGGACACTTACA 60.421 50.000 0.00 0.00 0.00 2.41
92 93 3.476552 CACAACACTGGGACACTTACAT 58.523 45.455 0.00 0.00 0.00 2.29
93 94 4.504165 CCACAACACTGGGACACTTACATA 60.504 45.833 0.00 0.00 0.00 2.29
94 95 5.245531 CACAACACTGGGACACTTACATAT 58.754 41.667 0.00 0.00 0.00 1.78
95 96 6.403049 CACAACACTGGGACACTTACATATA 58.597 40.000 0.00 0.00 0.00 0.86
96 97 6.535150 CACAACACTGGGACACTTACATATAG 59.465 42.308 0.00 0.00 0.00 1.31
97 98 5.871396 ACACTGGGACACTTACATATAGG 57.129 43.478 0.00 0.00 0.00 2.57
98 99 4.654262 ACACTGGGACACTTACATATAGGG 59.346 45.833 0.00 0.00 0.00 3.53
99 100 3.646637 ACTGGGACACTTACATATAGGGC 59.353 47.826 0.00 0.00 0.00 5.19
100 101 2.976882 TGGGACACTTACATATAGGGCC 59.023 50.000 0.00 0.00 0.00 5.80
101 102 2.305052 GGGACACTTACATATAGGGCCC 59.695 54.545 16.46 16.46 0.00 5.80
102 103 2.976882 GGACACTTACATATAGGGCCCA 59.023 50.000 27.56 10.89 0.00 5.36
103 104 3.244457 GGACACTTACATATAGGGCCCAC 60.244 52.174 27.56 0.00 0.00 4.61
104 105 3.389866 ACACTTACATATAGGGCCCACA 58.610 45.455 27.56 12.31 0.00 4.17
105 106 3.783642 ACACTTACATATAGGGCCCACAA 59.216 43.478 27.56 9.62 0.00 3.33
106 107 4.228666 ACACTTACATATAGGGCCCACAAA 59.771 41.667 27.56 6.58 0.00 2.83
107 108 5.197451 CACTTACATATAGGGCCCACAAAA 58.803 41.667 27.56 4.44 0.00 2.44
108 109 5.067283 CACTTACATATAGGGCCCACAAAAC 59.933 44.000 27.56 0.00 0.00 2.43
109 110 5.044402 ACTTACATATAGGGCCCACAAAACT 60.044 40.000 27.56 2.98 0.00 2.66
110 111 3.631250 ACATATAGGGCCCACAAAACTG 58.369 45.455 27.56 13.83 0.00 3.16
111 112 3.011257 ACATATAGGGCCCACAAAACTGT 59.989 43.478 27.56 14.49 0.00 3.55
112 113 4.228666 ACATATAGGGCCCACAAAACTGTA 59.771 41.667 27.56 3.96 0.00 2.74
113 114 2.871096 TAGGGCCCACAAAACTGTAG 57.129 50.000 27.56 0.00 0.00 2.74
114 115 1.145571 AGGGCCCACAAAACTGTAGA 58.854 50.000 27.56 0.00 0.00 2.59
115 116 1.073923 AGGGCCCACAAAACTGTAGAG 59.926 52.381 27.56 0.00 0.00 2.43
116 117 1.534729 GGCCCACAAAACTGTAGAGG 58.465 55.000 0.00 0.00 0.00 3.69
117 118 0.881796 GCCCACAAAACTGTAGAGGC 59.118 55.000 0.00 0.00 0.00 4.70
118 119 1.534729 CCCACAAAACTGTAGAGGCC 58.465 55.000 0.00 0.00 0.00 5.19
119 120 1.534729 CCACAAAACTGTAGAGGCCC 58.465 55.000 0.00 0.00 0.00 5.80
120 121 1.202879 CCACAAAACTGTAGAGGCCCA 60.203 52.381 0.00 0.00 0.00 5.36
121 122 2.154462 CACAAAACTGTAGAGGCCCAG 58.846 52.381 0.00 1.32 34.82 4.45
122 123 1.073923 ACAAAACTGTAGAGGCCCAGG 59.926 52.381 10.94 0.00 32.90 4.45
123 124 0.698818 AAAACTGTAGAGGCCCAGGG 59.301 55.000 0.00 0.00 32.90 4.45
124 125 0.178873 AAACTGTAGAGGCCCAGGGA 60.179 55.000 10.89 0.00 32.90 4.20
125 126 0.618968 AACTGTAGAGGCCCAGGGAG 60.619 60.000 10.89 0.00 32.90 4.30
126 127 1.764054 CTGTAGAGGCCCAGGGAGG 60.764 68.421 10.89 0.00 37.03 4.30
139 140 2.747686 GGAGGCGACCCAGTCAAA 59.252 61.111 0.00 0.00 32.09 2.69
140 141 1.072505 GGAGGCGACCCAGTCAAAA 59.927 57.895 0.00 0.00 32.09 2.44
141 142 0.322546 GGAGGCGACCCAGTCAAAAT 60.323 55.000 0.00 0.00 32.09 1.82
142 143 1.087501 GAGGCGACCCAGTCAAAATC 58.912 55.000 0.00 0.00 32.09 2.17
143 144 0.673644 AGGCGACCCAGTCAAAATCG 60.674 55.000 0.00 0.00 35.91 3.34
144 145 1.644786 GGCGACCCAGTCAAAATCGG 61.645 60.000 0.00 0.00 33.45 4.18
145 146 0.672401 GCGACCCAGTCAAAATCGGA 60.672 55.000 0.00 0.00 33.45 4.55
146 147 1.803334 CGACCCAGTCAAAATCGGAA 58.197 50.000 0.00 0.00 32.09 4.30
147 148 1.732259 CGACCCAGTCAAAATCGGAAG 59.268 52.381 0.00 0.00 32.09 3.46
148 149 1.468914 GACCCAGTCAAAATCGGAAGC 59.531 52.381 0.00 0.00 32.09 3.86
149 150 1.202879 ACCCAGTCAAAATCGGAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
150 151 1.885887 CCCAGTCAAAATCGGAAGCAA 59.114 47.619 0.00 0.00 0.00 3.91
151 152 2.295909 CCCAGTCAAAATCGGAAGCAAA 59.704 45.455 0.00 0.00 0.00 3.68
152 153 3.243704 CCCAGTCAAAATCGGAAGCAAAA 60.244 43.478 0.00 0.00 0.00 2.44
153 154 4.367450 CCAGTCAAAATCGGAAGCAAAAA 58.633 39.130 0.00 0.00 0.00 1.94
154 155 4.990426 CCAGTCAAAATCGGAAGCAAAAAT 59.010 37.500 0.00 0.00 0.00 1.82
155 156 5.119125 CCAGTCAAAATCGGAAGCAAAAATC 59.881 40.000 0.00 0.00 0.00 2.17
156 157 4.917415 AGTCAAAATCGGAAGCAAAAATCG 59.083 37.500 0.00 0.00 0.00 3.34
157 158 3.672867 TCAAAATCGGAAGCAAAAATCGC 59.327 39.130 0.00 0.00 0.00 4.58
158 159 3.575965 AAATCGGAAGCAAAAATCGCT 57.424 38.095 0.00 0.00 42.98 4.93
159 160 4.695217 AAATCGGAAGCAAAAATCGCTA 57.305 36.364 0.00 0.00 39.29 4.26
160 161 4.695217 AATCGGAAGCAAAAATCGCTAA 57.305 36.364 0.00 0.00 39.29 3.09
161 162 4.900635 ATCGGAAGCAAAAATCGCTAAT 57.099 36.364 0.00 0.00 39.29 1.73
162 163 4.014847 TCGGAAGCAAAAATCGCTAATG 57.985 40.909 0.00 0.00 39.29 1.90
163 164 3.438781 TCGGAAGCAAAAATCGCTAATGT 59.561 39.130 0.00 0.00 39.29 2.71
164 165 4.083003 TCGGAAGCAAAAATCGCTAATGTT 60.083 37.500 0.00 0.00 39.29 2.71
165 166 4.030529 CGGAAGCAAAAATCGCTAATGTTG 59.969 41.667 0.00 0.00 39.29 3.33
166 167 4.201618 GGAAGCAAAAATCGCTAATGTTGC 60.202 41.667 0.00 0.00 39.29 4.17
167 168 3.253230 AGCAAAAATCGCTAATGTTGCC 58.747 40.909 0.00 0.00 38.84 4.52
168 169 2.348362 GCAAAAATCGCTAATGTTGCCC 59.652 45.455 0.00 0.00 34.99 5.36
169 170 3.848726 CAAAAATCGCTAATGTTGCCCT 58.151 40.909 0.00 0.00 0.00 5.19
170 171 3.782889 AAAATCGCTAATGTTGCCCTC 57.217 42.857 0.00 0.00 0.00 4.30
171 172 2.418368 AATCGCTAATGTTGCCCTCA 57.582 45.000 0.00 0.00 0.00 3.86
172 173 2.418368 ATCGCTAATGTTGCCCTCAA 57.582 45.000 0.00 0.00 0.00 3.02
173 174 2.418368 TCGCTAATGTTGCCCTCAAT 57.582 45.000 0.00 0.00 34.29 2.57
174 175 2.722094 TCGCTAATGTTGCCCTCAATT 58.278 42.857 0.00 0.00 34.29 2.32
175 176 2.423185 TCGCTAATGTTGCCCTCAATTG 59.577 45.455 0.00 0.00 34.29 2.32
176 177 2.423185 CGCTAATGTTGCCCTCAATTGA 59.577 45.455 8.12 8.12 34.29 2.57
177 178 3.067180 CGCTAATGTTGCCCTCAATTGAT 59.933 43.478 8.96 0.00 34.29 2.57
178 179 4.440525 CGCTAATGTTGCCCTCAATTGATT 60.441 41.667 8.96 0.24 34.29 2.57
179 180 5.045872 GCTAATGTTGCCCTCAATTGATTC 58.954 41.667 8.96 1.94 34.29 2.52
180 181 5.163478 GCTAATGTTGCCCTCAATTGATTCT 60.163 40.000 8.96 0.00 34.29 2.40
181 182 4.996788 ATGTTGCCCTCAATTGATTCTC 57.003 40.909 8.96 0.00 34.29 2.87
182 183 3.765381 TGTTGCCCTCAATTGATTCTCA 58.235 40.909 8.96 2.47 34.29 3.27
183 184 3.760151 TGTTGCCCTCAATTGATTCTCAG 59.240 43.478 8.96 0.00 34.29 3.35
184 185 2.372264 TGCCCTCAATTGATTCTCAGC 58.628 47.619 8.96 6.58 0.00 4.26
185 186 2.025605 TGCCCTCAATTGATTCTCAGCT 60.026 45.455 8.96 0.00 0.00 4.24
186 187 2.617774 GCCCTCAATTGATTCTCAGCTC 59.382 50.000 8.96 0.00 0.00 4.09
187 188 3.684981 GCCCTCAATTGATTCTCAGCTCT 60.685 47.826 8.96 0.00 0.00 4.09
188 189 4.128643 CCCTCAATTGATTCTCAGCTCTC 58.871 47.826 8.96 0.00 0.00 3.20
189 190 4.141665 CCCTCAATTGATTCTCAGCTCTCT 60.142 45.833 8.96 0.00 0.00 3.10
190 191 5.070180 CCCTCAATTGATTCTCAGCTCTCTA 59.930 44.000 8.96 0.00 0.00 2.43
191 192 6.407865 CCCTCAATTGATTCTCAGCTCTCTAA 60.408 42.308 8.96 0.00 0.00 2.10
192 193 7.046652 CCTCAATTGATTCTCAGCTCTCTAAA 58.953 38.462 8.96 0.00 0.00 1.85
193 194 7.551974 CCTCAATTGATTCTCAGCTCTCTAAAA 59.448 37.037 8.96 0.00 0.00 1.52
194 195 8.261492 TCAATTGATTCTCAGCTCTCTAAAAC 57.739 34.615 3.38 0.00 0.00 2.43
195 196 8.099537 TCAATTGATTCTCAGCTCTCTAAAACT 58.900 33.333 3.38 0.00 0.00 2.66
196 197 9.376075 CAATTGATTCTCAGCTCTCTAAAACTA 57.624 33.333 0.00 0.00 0.00 2.24
197 198 9.598517 AATTGATTCTCAGCTCTCTAAAACTAG 57.401 33.333 0.00 0.00 0.00 2.57
198 199 7.106439 TGATTCTCAGCTCTCTAAAACTAGG 57.894 40.000 0.00 0.00 0.00 3.02
199 200 5.923733 TTCTCAGCTCTCTAAAACTAGGG 57.076 43.478 0.00 0.00 0.00 3.53
200 201 5.194473 TCTCAGCTCTCTAAAACTAGGGA 57.806 43.478 0.00 0.00 0.00 4.20
201 202 5.197451 TCTCAGCTCTCTAAAACTAGGGAG 58.803 45.833 4.90 4.90 45.29 4.30
208 209 6.777213 TCTCTAAAACTAGGGAGCTTAGTG 57.223 41.667 0.00 0.00 31.96 2.74
209 210 6.254522 TCTCTAAAACTAGGGAGCTTAGTGT 58.745 40.000 0.00 0.00 31.96 3.55
210 211 6.724905 TCTCTAAAACTAGGGAGCTTAGTGTT 59.275 38.462 5.12 5.12 34.02 3.32
211 212 7.234988 TCTCTAAAACTAGGGAGCTTAGTGTTT 59.765 37.037 5.08 6.95 32.32 2.83
212 213 7.742767 TCTAAAACTAGGGAGCTTAGTGTTTT 58.257 34.615 16.53 16.53 38.86 2.43
213 214 8.873144 TCTAAAACTAGGGAGCTTAGTGTTTTA 58.127 33.333 16.83 16.83 37.35 1.52
214 215 9.668497 CTAAAACTAGGGAGCTTAGTGTTTTAT 57.332 33.333 17.50 5.31 37.58 1.40
216 217 9.668497 AAAACTAGGGAGCTTAGTGTTTTATAG 57.332 33.333 13.08 0.00 35.35 1.31
217 218 7.362802 ACTAGGGAGCTTAGTGTTTTATAGG 57.637 40.000 0.00 0.00 30.46 2.57
218 219 7.130775 ACTAGGGAGCTTAGTGTTTTATAGGA 58.869 38.462 0.00 0.00 30.46 2.94
219 220 7.790314 ACTAGGGAGCTTAGTGTTTTATAGGAT 59.210 37.037 0.00 0.00 30.46 3.24
220 221 6.831976 AGGGAGCTTAGTGTTTTATAGGATG 58.168 40.000 0.00 0.00 0.00 3.51
221 222 5.470437 GGGAGCTTAGTGTTTTATAGGATGC 59.530 44.000 0.00 0.00 0.00 3.91
222 223 6.055588 GGAGCTTAGTGTTTTATAGGATGCA 58.944 40.000 0.00 0.00 0.00 3.96
223 224 6.203723 GGAGCTTAGTGTTTTATAGGATGCAG 59.796 42.308 0.00 0.00 0.00 4.41
224 225 6.889198 AGCTTAGTGTTTTATAGGATGCAGA 58.111 36.000 0.00 0.00 0.00 4.26
225 226 6.989169 AGCTTAGTGTTTTATAGGATGCAGAG 59.011 38.462 0.00 0.00 0.00 3.35
226 227 6.203723 GCTTAGTGTTTTATAGGATGCAGAGG 59.796 42.308 0.00 0.00 0.00 3.69
227 228 5.700402 AGTGTTTTATAGGATGCAGAGGT 57.300 39.130 0.00 0.00 0.00 3.85
228 229 5.675538 AGTGTTTTATAGGATGCAGAGGTC 58.324 41.667 0.00 0.00 0.00 3.85
229 230 5.189736 AGTGTTTTATAGGATGCAGAGGTCA 59.810 40.000 0.00 0.00 0.00 4.02
230 231 5.525378 GTGTTTTATAGGATGCAGAGGTCAG 59.475 44.000 0.00 0.00 0.00 3.51
231 232 5.425217 TGTTTTATAGGATGCAGAGGTCAGA 59.575 40.000 0.00 0.00 0.00 3.27
232 233 6.100279 TGTTTTATAGGATGCAGAGGTCAGAT 59.900 38.462 0.00 0.00 0.00 2.90
233 234 5.735285 TTATAGGATGCAGAGGTCAGATG 57.265 43.478 0.00 0.00 0.00 2.90
234 235 1.876849 AGGATGCAGAGGTCAGATGT 58.123 50.000 0.00 0.00 0.00 3.06
235 236 1.485480 AGGATGCAGAGGTCAGATGTG 59.515 52.381 0.00 0.00 0.00 3.21
236 237 1.209019 GGATGCAGAGGTCAGATGTGT 59.791 52.381 0.00 0.00 0.00 3.72
237 238 2.277969 GATGCAGAGGTCAGATGTGTG 58.722 52.381 0.00 0.00 0.00 3.82
238 239 1.051008 TGCAGAGGTCAGATGTGTGT 58.949 50.000 0.00 0.00 0.00 3.72
239 240 1.417517 TGCAGAGGTCAGATGTGTGTT 59.582 47.619 0.00 0.00 0.00 3.32
240 241 2.158769 TGCAGAGGTCAGATGTGTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
241 242 3.070878 TGCAGAGGTCAGATGTGTGTTTA 59.929 43.478 0.00 0.00 0.00 2.01
242 243 4.256920 GCAGAGGTCAGATGTGTGTTTAT 58.743 43.478 0.00 0.00 0.00 1.40
243 244 4.697352 GCAGAGGTCAGATGTGTGTTTATT 59.303 41.667 0.00 0.00 0.00 1.40
244 245 5.391310 GCAGAGGTCAGATGTGTGTTTATTG 60.391 44.000 0.00 0.00 0.00 1.90
245 246 5.934043 CAGAGGTCAGATGTGTGTTTATTGA 59.066 40.000 0.00 0.00 0.00 2.57
246 247 6.091849 CAGAGGTCAGATGTGTGTTTATTGAG 59.908 42.308 0.00 0.00 0.00 3.02
247 248 5.869579 AGGTCAGATGTGTGTTTATTGAGT 58.130 37.500 0.00 0.00 0.00 3.41
248 249 6.299141 AGGTCAGATGTGTGTTTATTGAGTT 58.701 36.000 0.00 0.00 0.00 3.01
249 250 6.772716 AGGTCAGATGTGTGTTTATTGAGTTT 59.227 34.615 0.00 0.00 0.00 2.66
250 251 6.857964 GGTCAGATGTGTGTTTATTGAGTTTG 59.142 38.462 0.00 0.00 0.00 2.93
251 252 7.417612 GTCAGATGTGTGTTTATTGAGTTTGT 58.582 34.615 0.00 0.00 0.00 2.83
252 253 8.556194 GTCAGATGTGTGTTTATTGAGTTTGTA 58.444 33.333 0.00 0.00 0.00 2.41
253 254 9.283768 TCAGATGTGTGTTTATTGAGTTTGTAT 57.716 29.630 0.00 0.00 0.00 2.29
254 255 9.897744 CAGATGTGTGTTTATTGAGTTTGTATT 57.102 29.630 0.00 0.00 0.00 1.89
287 288 9.097257 AGAACCTGTTTATTGTGTTTCATTTTG 57.903 29.630 0.00 0.00 0.00 2.44
288 289 9.092876 GAACCTGTTTATTGTGTTTCATTTTGA 57.907 29.630 0.00 0.00 0.00 2.69
289 290 9.442047 AACCTGTTTATTGTGTTTCATTTTGAA 57.558 25.926 0.00 0.00 34.03 2.69
290 291 9.612066 ACCTGTTTATTGTGTTTCATTTTGAAT 57.388 25.926 0.00 0.00 36.11 2.57
316 317 9.658475 TTAATAAAGCCAATAAATGAATCGTCG 57.342 29.630 0.00 0.00 0.00 5.12
317 318 5.560966 AAAGCCAATAAATGAATCGTCGT 57.439 34.783 0.00 0.00 0.00 4.34
318 319 4.795970 AGCCAATAAATGAATCGTCGTC 57.204 40.909 0.00 0.00 0.00 4.20
319 320 3.245284 AGCCAATAAATGAATCGTCGTCG 59.755 43.478 0.00 0.00 38.55 5.12
320 321 3.531982 CCAATAAATGAATCGTCGTCGC 58.468 45.455 0.00 0.00 36.96 5.19
321 322 3.531982 CAATAAATGAATCGTCGTCGCC 58.468 45.455 0.00 0.00 36.96 5.54
322 323 2.572191 TAAATGAATCGTCGTCGCCT 57.428 45.000 0.00 0.00 36.96 5.52
323 324 1.722011 AAATGAATCGTCGTCGCCTT 58.278 45.000 0.00 0.00 36.96 4.35
324 325 2.572191 AATGAATCGTCGTCGCCTTA 57.428 45.000 0.00 0.00 36.96 2.69
325 326 2.795175 ATGAATCGTCGTCGCCTTAT 57.205 45.000 0.00 0.00 36.96 1.73
326 327 2.572191 TGAATCGTCGTCGCCTTATT 57.428 45.000 0.00 0.00 36.96 1.40
327 328 2.883574 TGAATCGTCGTCGCCTTATTT 58.116 42.857 0.00 0.00 36.96 1.40
328 329 4.031418 TGAATCGTCGTCGCCTTATTTA 57.969 40.909 0.00 0.00 36.96 1.40
329 330 4.613944 TGAATCGTCGTCGCCTTATTTAT 58.386 39.130 0.00 0.00 36.96 1.40
330 331 5.761003 TGAATCGTCGTCGCCTTATTTATA 58.239 37.500 0.00 0.00 36.96 0.98
331 332 5.854866 TGAATCGTCGTCGCCTTATTTATAG 59.145 40.000 0.00 0.00 36.96 1.31
332 333 3.558505 TCGTCGTCGCCTTATTTATAGC 58.441 45.455 0.00 0.00 36.96 2.97
333 334 3.251729 TCGTCGTCGCCTTATTTATAGCT 59.748 43.478 0.00 0.00 36.96 3.32
334 335 3.979495 CGTCGTCGCCTTATTTATAGCTT 59.021 43.478 0.00 0.00 0.00 3.74
335 336 4.443394 CGTCGTCGCCTTATTTATAGCTTT 59.557 41.667 0.00 0.00 0.00 3.51
336 337 5.051240 CGTCGTCGCCTTATTTATAGCTTTT 60.051 40.000 0.00 0.00 0.00 2.27
337 338 6.353302 GTCGTCGCCTTATTTATAGCTTTTC 58.647 40.000 0.00 0.00 0.00 2.29
338 339 5.174398 TCGTCGCCTTATTTATAGCTTTTCG 59.826 40.000 0.00 0.00 0.00 3.46
339 340 5.611844 CGTCGCCTTATTTATAGCTTTTCGG 60.612 44.000 0.00 0.00 0.00 4.30
340 341 4.753107 TCGCCTTATTTATAGCTTTTCGGG 59.247 41.667 0.00 0.00 0.00 5.14
341 342 4.083484 CGCCTTATTTATAGCTTTTCGGGG 60.083 45.833 0.00 0.00 0.00 5.73
342 343 4.321008 GCCTTATTTATAGCTTTTCGGGGC 60.321 45.833 0.00 0.00 0.00 5.80
343 344 5.070685 CCTTATTTATAGCTTTTCGGGGCT 58.929 41.667 0.00 0.00 41.92 5.19
344 345 5.048713 CCTTATTTATAGCTTTTCGGGGCTG 60.049 44.000 0.00 0.00 39.31 4.85
345 346 2.341846 TTATAGCTTTTCGGGGCTGG 57.658 50.000 0.00 0.00 39.31 4.85
346 347 0.472471 TATAGCTTTTCGGGGCTGGG 59.528 55.000 0.00 0.00 39.31 4.45
347 348 1.571773 ATAGCTTTTCGGGGCTGGGT 61.572 55.000 0.00 0.00 39.31 4.51
348 349 0.910566 TAGCTTTTCGGGGCTGGGTA 60.911 55.000 0.00 0.00 39.31 3.69
349 350 1.076995 GCTTTTCGGGGCTGGGTAT 60.077 57.895 0.00 0.00 0.00 2.73
350 351 0.181824 GCTTTTCGGGGCTGGGTATA 59.818 55.000 0.00 0.00 0.00 1.47
351 352 1.202891 GCTTTTCGGGGCTGGGTATAT 60.203 52.381 0.00 0.00 0.00 0.86
352 353 2.751816 GCTTTTCGGGGCTGGGTATATT 60.752 50.000 0.00 0.00 0.00 1.28
353 354 3.562182 CTTTTCGGGGCTGGGTATATTT 58.438 45.455 0.00 0.00 0.00 1.40
354 355 2.943036 TTCGGGGCTGGGTATATTTC 57.057 50.000 0.00 0.00 0.00 2.17
355 356 0.682852 TCGGGGCTGGGTATATTTCG 59.317 55.000 0.00 0.00 0.00 3.46
356 357 0.682852 CGGGGCTGGGTATATTTCGA 59.317 55.000 0.00 0.00 0.00 3.71
374 375 0.470341 GAGTACTCCATTGGGGCTCC 59.530 60.000 12.13 0.00 36.21 4.70
381 382 3.319198 ATTGGGGCTCCGACACGT 61.319 61.111 0.00 0.00 35.24 4.49
382 383 2.890766 ATTGGGGCTCCGACACGTT 61.891 57.895 0.00 0.00 35.24 3.99
499 533 3.869272 GGTCTGCTGCGCGGAATG 61.869 66.667 23.20 8.85 46.01 2.67
605 680 1.370657 GGCTCGGCTCGTCTAATCG 60.371 63.158 0.00 0.00 0.00 3.34
608 684 1.398705 GCTCGGCTCGTCTAATCGTAG 60.399 57.143 0.00 0.00 0.00 3.51
639 763 2.505819 CCTATTCTGGTGCCTAGTGGTT 59.494 50.000 0.00 0.00 35.27 3.67
642 766 2.031919 TGGTGCCTAGTGGTTGCG 59.968 61.111 0.00 0.00 35.27 4.85
690 815 2.598394 GGCCTGCCTGCTGTTCAA 60.598 61.111 0.00 0.00 0.00 2.69
691 816 2.202395 GGCCTGCCTGCTGTTCAAA 61.202 57.895 0.00 0.00 0.00 2.69
692 817 1.288127 GCCTGCCTGCTGTTCAAAG 59.712 57.895 0.00 0.00 0.00 2.77
693 818 1.288127 CCTGCCTGCTGTTCAAAGC 59.712 57.895 0.00 0.00 43.82 3.51
694 819 1.288127 CTGCCTGCTGTTCAAAGCC 59.712 57.895 0.00 0.00 42.83 4.35
695 820 1.455402 TGCCTGCTGTTCAAAGCCA 60.455 52.632 0.00 0.00 42.83 4.75
698 823 0.031178 CCTGCTGTTCAAAGCCACAC 59.969 55.000 0.00 0.00 42.83 3.82
722 847 2.864946 CGATCAATCAGTCCTCTGCTTG 59.135 50.000 5.73 5.73 44.33 4.01
747 888 1.000283 CTCTCTCTCACACACACACCC 60.000 57.143 0.00 0.00 0.00 4.61
886 1040 6.915300 GCCTATATATACGAGCTCACATTCTG 59.085 42.308 15.40 0.00 0.00 3.02
954 1108 1.242076 AGCAAGCAATGGACTGTGTC 58.758 50.000 0.00 0.00 0.00 3.67
1124 1278 3.132139 CGGCGTCTTCCTCCTCGA 61.132 66.667 0.00 0.00 0.00 4.04
1125 1279 2.490685 GGCGTCTTCCTCCTCGAC 59.509 66.667 0.00 0.00 0.00 4.20
1127 1281 2.792599 CGTCTTCCTCCTCGACGG 59.207 66.667 0.00 0.00 44.75 4.79
1128 1282 2.762234 CGTCTTCCTCCTCGACGGG 61.762 68.421 0.00 0.00 44.75 5.28
1129 1283 2.754658 TCTTCCTCCTCGACGGGC 60.755 66.667 0.00 0.00 0.00 6.13
1381 1549 2.258591 CCGAGGTGTGACAGTCCG 59.741 66.667 0.00 0.00 0.00 4.79
1382 1550 2.561956 CCGAGGTGTGACAGTCCGT 61.562 63.158 0.00 0.00 0.00 4.69
1383 1551 1.239296 CCGAGGTGTGACAGTCCGTA 61.239 60.000 0.00 0.00 0.00 4.02
1395 1563 1.852895 CAGTCCGTAGTAATTCGCAGC 59.147 52.381 0.00 0.00 0.00 5.25
1399 1567 0.844503 CGTAGTAATTCGCAGCCGTC 59.155 55.000 0.00 0.00 35.54 4.79
1417 1585 2.665185 GTCAGGTGGTCGTGGCAC 60.665 66.667 7.79 7.79 34.69 5.01
1418 1586 2.842462 TCAGGTGGTCGTGGCACT 60.842 61.111 16.72 0.00 0.00 4.40
1419 1587 2.666190 CAGGTGGTCGTGGCACTG 60.666 66.667 16.72 9.49 0.00 3.66
1420 1588 3.941188 AGGTGGTCGTGGCACTGG 61.941 66.667 16.72 0.59 0.00 4.00
1422 1590 3.936203 GTGGTCGTGGCACTGGGA 61.936 66.667 16.72 2.57 0.00 4.37
1517 1695 2.017049 GCCAATGCCAGTTACTTCGAT 58.983 47.619 0.00 0.00 0.00 3.59
1672 3207 6.375174 AGTCATTAGCTTATGAAATGTGTGCA 59.625 34.615 16.51 0.00 36.37 4.57
1903 6777 1.876664 GAAGCGCAGAGGGAAAACC 59.123 57.895 11.47 0.00 40.67 3.27
1999 6873 1.301716 GAACAAGCCCGCTCACAGA 60.302 57.895 0.00 0.00 0.00 3.41
2004 6878 1.021390 AAGCCCGCTCACAGAAATCG 61.021 55.000 0.00 0.00 0.00 3.34
2005 6879 1.447838 GCCCGCTCACAGAAATCGA 60.448 57.895 0.00 0.00 0.00 3.59
2006 6880 1.424493 GCCCGCTCACAGAAATCGAG 61.424 60.000 0.00 0.00 0.00 4.04
2008 6882 1.424493 CCGCTCACAGAAATCGAGGC 61.424 60.000 0.00 0.00 0.00 4.70
2009 6883 1.424493 CGCTCACAGAAATCGAGGCC 61.424 60.000 0.00 0.00 0.00 5.19
2075 6950 2.158593 TCGGGGGACATTTTCACTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
2118 6993 2.485426 TGGCAAGCTTTTCTCTGATTCG 59.515 45.455 0.00 0.00 0.00 3.34
2122 6997 1.079503 GCTTTTCTCTGATTCGCGGT 58.920 50.000 6.13 0.00 0.00 5.68
2138 7013 4.197750 TCGCGGTAGTTCTTCTTAGAGAT 58.802 43.478 6.13 0.00 0.00 2.75
2151 7026 3.629855 TCTTAGAGATCTCCTGCTTGACG 59.370 47.826 19.30 0.00 0.00 4.35
2166 7041 3.722082 GCTTGACGCTCGTTTACATCAAG 60.722 47.826 12.10 12.10 43.74 3.02
2183 7058 5.807520 ACATCAAGTAGACGCAAAGACTATG 59.192 40.000 0.00 0.00 30.51 2.23
2189 7064 2.653101 GACGCAAAGACTATGGGTCGC 61.653 57.143 7.77 0.00 46.29 5.19
2214 7089 2.528743 CGAGCAATACCAGCGCCAG 61.529 63.158 2.29 0.00 37.01 4.85
2215 7090 2.124570 AGCAATACCAGCGCCAGG 60.125 61.111 14.40 14.40 37.01 4.45
2216 7091 3.892581 GCAATACCAGCGCCAGGC 61.893 66.667 15.76 0.00 44.05 4.85
2270 7145 3.112580 CGTAAACAAGTGGCTGGTTTTG 58.887 45.455 6.92 0.00 38.42 2.44
2289 7164 6.537301 GGTTTTGGGAAGTTTCTTAAACCTTG 59.463 38.462 16.89 0.00 42.34 3.61
2296 7171 7.919091 GGGAAGTTTCTTAAACCTTGTGTTTAG 59.081 37.037 0.00 0.00 46.99 1.85
2301 7176 8.791605 GTTTCTTAAACCTTGTGTTTAGTTTCG 58.208 33.333 0.00 0.00 46.99 3.46
2308 7183 2.645802 TGTGTTTAGTTTCGGCAAGGT 58.354 42.857 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.307108 TGGCCGTGTGTCCATCGA 61.307 61.111 0.00 0.00 0.00 3.59
1 2 3.118454 GTGGCCGTGTGTCCATCG 61.118 66.667 0.00 0.00 34.47 3.84
16 17 4.101448 CTGGGGGCTTCCTCGGTG 62.101 72.222 0.00 0.00 32.60 4.94
35 36 4.520846 GATGAAAGCGGCGTGGCG 62.521 66.667 9.37 11.80 38.18 5.69
37 38 0.742990 TTAGGATGAAAGCGGCGTGG 60.743 55.000 9.37 0.00 0.00 4.94
39 40 1.737793 CTTTTAGGATGAAAGCGGCGT 59.262 47.619 9.37 0.00 0.00 5.68
41 42 2.097629 GGTCTTTTAGGATGAAAGCGGC 59.902 50.000 0.00 0.00 34.80 6.53
42 43 3.343617 TGGTCTTTTAGGATGAAAGCGG 58.656 45.455 0.00 0.00 34.80 5.52
44 45 6.575162 TTTCTGGTCTTTTAGGATGAAAGC 57.425 37.500 0.00 0.00 34.80 3.51
45 46 6.349694 GGCTTTCTGGTCTTTTAGGATGAAAG 60.350 42.308 0.00 0.00 40.86 2.62
46 47 5.476945 GGCTTTCTGGTCTTTTAGGATGAAA 59.523 40.000 0.00 0.00 0.00 2.69
48 49 4.567747 GGGCTTTCTGGTCTTTTAGGATGA 60.568 45.833 0.00 0.00 0.00 2.92
49 50 3.696548 GGGCTTTCTGGTCTTTTAGGATG 59.303 47.826 0.00 0.00 0.00 3.51
50 51 3.333680 TGGGCTTTCTGGTCTTTTAGGAT 59.666 43.478 0.00 0.00 0.00 3.24
51 52 2.714250 TGGGCTTTCTGGTCTTTTAGGA 59.286 45.455 0.00 0.00 0.00 2.94
52 53 2.820197 GTGGGCTTTCTGGTCTTTTAGG 59.180 50.000 0.00 0.00 0.00 2.69
53 54 3.486383 TGTGGGCTTTCTGGTCTTTTAG 58.514 45.455 0.00 0.00 0.00 1.85
54 55 3.586470 TGTGGGCTTTCTGGTCTTTTA 57.414 42.857 0.00 0.00 0.00 1.52
55 56 2.430694 GTTGTGGGCTTTCTGGTCTTTT 59.569 45.455 0.00 0.00 0.00 2.27
56 57 2.031870 GTTGTGGGCTTTCTGGTCTTT 58.968 47.619 0.00 0.00 0.00 2.52
57 58 1.064017 TGTTGTGGGCTTTCTGGTCTT 60.064 47.619 0.00 0.00 0.00 3.01
58 59 0.550914 TGTTGTGGGCTTTCTGGTCT 59.449 50.000 0.00 0.00 0.00 3.85
59 60 0.668535 GTGTTGTGGGCTTTCTGGTC 59.331 55.000 0.00 0.00 0.00 4.02
61 62 0.670162 CAGTGTTGTGGGCTTTCTGG 59.330 55.000 0.00 0.00 0.00 3.86
62 63 0.670162 CCAGTGTTGTGGGCTTTCTG 59.330 55.000 0.00 0.00 33.46 3.02
63 64 3.116091 CCAGTGTTGTGGGCTTTCT 57.884 52.632 0.00 0.00 33.46 2.52
70 71 2.218603 GTAAGTGTCCCAGTGTTGTGG 58.781 52.381 0.00 0.00 37.34 4.17
74 75 5.130477 CCCTATATGTAAGTGTCCCAGTGTT 59.870 44.000 0.00 0.00 0.00 3.32
75 76 4.654262 CCCTATATGTAAGTGTCCCAGTGT 59.346 45.833 0.00 0.00 0.00 3.55
76 77 4.503296 GCCCTATATGTAAGTGTCCCAGTG 60.503 50.000 0.00 0.00 0.00 3.66
77 78 3.646637 GCCCTATATGTAAGTGTCCCAGT 59.353 47.826 0.00 0.00 0.00 4.00
78 79 3.008049 GGCCCTATATGTAAGTGTCCCAG 59.992 52.174 0.00 0.00 0.00 4.45
79 80 2.976882 GGCCCTATATGTAAGTGTCCCA 59.023 50.000 0.00 0.00 0.00 4.37
80 81 2.305052 GGGCCCTATATGTAAGTGTCCC 59.695 54.545 17.04 0.00 0.00 4.46
81 82 2.976882 TGGGCCCTATATGTAAGTGTCC 59.023 50.000 25.70 0.00 0.00 4.02
82 83 3.389983 TGTGGGCCCTATATGTAAGTGTC 59.610 47.826 25.70 0.00 0.00 3.67
83 84 3.389866 TGTGGGCCCTATATGTAAGTGT 58.610 45.455 25.70 0.00 0.00 3.55
84 85 4.431416 TTGTGGGCCCTATATGTAAGTG 57.569 45.455 25.70 0.00 0.00 3.16
85 86 5.044402 AGTTTTGTGGGCCCTATATGTAAGT 60.044 40.000 25.70 8.05 0.00 2.24
86 87 5.299279 CAGTTTTGTGGGCCCTATATGTAAG 59.701 44.000 25.70 2.16 0.00 2.34
87 88 5.197451 CAGTTTTGTGGGCCCTATATGTAA 58.803 41.667 25.70 5.25 0.00 2.41
88 89 4.228666 ACAGTTTTGTGGGCCCTATATGTA 59.771 41.667 25.70 0.00 35.83 2.29
89 90 3.011257 ACAGTTTTGTGGGCCCTATATGT 59.989 43.478 25.70 15.15 35.83 2.29
90 91 3.631250 ACAGTTTTGTGGGCCCTATATG 58.369 45.455 25.70 14.50 35.83 1.78
91 92 4.724798 TCTACAGTTTTGTGGGCCCTATAT 59.275 41.667 25.70 0.00 38.23 0.86
92 93 4.105577 TCTACAGTTTTGTGGGCCCTATA 58.894 43.478 25.70 6.18 38.23 1.31
93 94 2.916934 TCTACAGTTTTGTGGGCCCTAT 59.083 45.455 25.70 0.00 38.23 2.57
94 95 2.304761 CTCTACAGTTTTGTGGGCCCTA 59.695 50.000 25.70 9.60 38.23 3.53
95 96 1.073923 CTCTACAGTTTTGTGGGCCCT 59.926 52.381 25.70 0.50 38.23 5.19
96 97 1.534729 CTCTACAGTTTTGTGGGCCC 58.465 55.000 17.59 17.59 38.23 5.80
97 98 1.534729 CCTCTACAGTTTTGTGGGCC 58.465 55.000 0.00 0.00 38.23 5.80
98 99 0.881796 GCCTCTACAGTTTTGTGGGC 59.118 55.000 0.00 0.00 39.56 5.36
99 100 1.534729 GGCCTCTACAGTTTTGTGGG 58.465 55.000 0.00 0.00 38.23 4.61
100 101 1.202879 TGGGCCTCTACAGTTTTGTGG 60.203 52.381 4.53 0.00 38.23 4.17
101 102 2.154462 CTGGGCCTCTACAGTTTTGTG 58.846 52.381 4.53 0.00 38.23 3.33
102 103 1.073923 CCTGGGCCTCTACAGTTTTGT 59.926 52.381 4.53 0.00 41.39 2.83
103 104 1.614317 CCCTGGGCCTCTACAGTTTTG 60.614 57.143 4.53 0.00 32.90 2.44
104 105 0.698818 CCCTGGGCCTCTACAGTTTT 59.301 55.000 4.53 0.00 32.90 2.43
105 106 0.178873 TCCCTGGGCCTCTACAGTTT 60.179 55.000 8.22 0.00 32.90 2.66
106 107 0.618968 CTCCCTGGGCCTCTACAGTT 60.619 60.000 8.22 0.00 32.90 3.16
107 108 1.002274 CTCCCTGGGCCTCTACAGT 59.998 63.158 8.22 0.00 32.90 3.55
108 109 1.764054 CCTCCCTGGGCCTCTACAG 60.764 68.421 8.22 0.34 34.54 2.74
109 110 2.368594 CCTCCCTGGGCCTCTACA 59.631 66.667 8.22 0.00 0.00 2.74
110 111 3.164977 GCCTCCCTGGGCCTCTAC 61.165 72.222 8.22 0.00 45.92 2.59
122 123 0.322546 ATTTTGACTGGGTCGCCTCC 60.323 55.000 0.00 0.00 34.95 4.30
123 124 1.087501 GATTTTGACTGGGTCGCCTC 58.912 55.000 0.00 0.00 34.95 4.70
124 125 0.673644 CGATTTTGACTGGGTCGCCT 60.674 55.000 0.00 0.00 34.95 5.52
125 126 1.644786 CCGATTTTGACTGGGTCGCC 61.645 60.000 0.00 0.00 34.95 5.54
126 127 0.672401 TCCGATTTTGACTGGGTCGC 60.672 55.000 0.00 0.00 34.95 5.19
127 128 1.732259 CTTCCGATTTTGACTGGGTCG 59.268 52.381 0.00 0.00 34.95 4.79
128 129 1.468914 GCTTCCGATTTTGACTGGGTC 59.531 52.381 0.00 0.00 0.00 4.46
129 130 1.202879 TGCTTCCGATTTTGACTGGGT 60.203 47.619 0.00 0.00 0.00 4.51
130 131 1.533625 TGCTTCCGATTTTGACTGGG 58.466 50.000 0.00 0.00 0.00 4.45
131 132 3.641437 TTTGCTTCCGATTTTGACTGG 57.359 42.857 0.00 0.00 0.00 4.00
132 133 5.164158 CGATTTTTGCTTCCGATTTTGACTG 60.164 40.000 0.00 0.00 0.00 3.51
133 134 4.917415 CGATTTTTGCTTCCGATTTTGACT 59.083 37.500 0.00 0.00 0.00 3.41
134 135 4.432892 GCGATTTTTGCTTCCGATTTTGAC 60.433 41.667 0.00 0.00 0.00 3.18
135 136 3.672867 GCGATTTTTGCTTCCGATTTTGA 59.327 39.130 0.00 0.00 0.00 2.69
136 137 3.674753 AGCGATTTTTGCTTCCGATTTTG 59.325 39.130 0.00 0.00 40.48 2.44
137 138 3.913089 AGCGATTTTTGCTTCCGATTTT 58.087 36.364 0.00 0.00 40.48 1.82
138 139 3.575965 AGCGATTTTTGCTTCCGATTT 57.424 38.095 0.00 0.00 40.48 2.17
139 140 4.695217 TTAGCGATTTTTGCTTCCGATT 57.305 36.364 0.00 0.00 43.71 3.34
140 141 4.096382 ACATTAGCGATTTTTGCTTCCGAT 59.904 37.500 0.00 0.00 43.71 4.18
141 142 3.438781 ACATTAGCGATTTTTGCTTCCGA 59.561 39.130 0.00 0.00 43.71 4.55
142 143 3.758300 ACATTAGCGATTTTTGCTTCCG 58.242 40.909 0.00 0.00 43.71 4.30
143 144 4.201618 GCAACATTAGCGATTTTTGCTTCC 60.202 41.667 5.64 0.00 43.71 3.46
144 145 4.201618 GGCAACATTAGCGATTTTTGCTTC 60.202 41.667 10.83 0.00 43.71 3.86
145 146 3.679502 GGCAACATTAGCGATTTTTGCTT 59.320 39.130 10.83 0.00 43.71 3.91
146 147 3.253230 GGCAACATTAGCGATTTTTGCT 58.747 40.909 10.83 0.00 46.29 3.91
147 148 2.348362 GGGCAACATTAGCGATTTTTGC 59.652 45.455 4.59 4.59 39.74 3.68
148 149 3.848726 AGGGCAACATTAGCGATTTTTG 58.151 40.909 0.00 0.00 39.74 2.44
149 150 3.509575 TGAGGGCAACATTAGCGATTTTT 59.490 39.130 0.00 0.00 39.74 1.94
150 151 3.088532 TGAGGGCAACATTAGCGATTTT 58.911 40.909 0.00 0.00 39.74 1.82
151 152 2.722094 TGAGGGCAACATTAGCGATTT 58.278 42.857 0.00 0.00 39.74 2.17
152 153 2.418368 TGAGGGCAACATTAGCGATT 57.582 45.000 0.00 0.00 39.74 3.34
153 154 2.418368 TTGAGGGCAACATTAGCGAT 57.582 45.000 0.00 0.00 39.74 4.58
154 155 2.418368 ATTGAGGGCAACATTAGCGA 57.582 45.000 0.00 0.00 36.72 4.93
155 156 2.423185 TCAATTGAGGGCAACATTAGCG 59.577 45.455 3.38 0.00 36.72 4.26
156 157 4.660789 ATCAATTGAGGGCAACATTAGC 57.339 40.909 14.54 0.00 36.72 3.09
157 158 6.095860 TGAGAATCAATTGAGGGCAACATTAG 59.904 38.462 14.54 0.00 45.97 1.73
158 159 5.951148 TGAGAATCAATTGAGGGCAACATTA 59.049 36.000 14.54 0.00 45.97 1.90
159 160 4.773674 TGAGAATCAATTGAGGGCAACATT 59.226 37.500 14.54 0.22 45.97 2.71
160 161 4.346730 TGAGAATCAATTGAGGGCAACAT 58.653 39.130 14.54 0.00 45.97 2.71
161 162 3.765381 TGAGAATCAATTGAGGGCAACA 58.235 40.909 14.54 6.53 45.97 3.33
175 176 6.322712 TCCCTAGTTTTAGAGAGCTGAGAATC 59.677 42.308 0.00 0.00 0.00 2.52
176 177 6.198639 TCCCTAGTTTTAGAGAGCTGAGAAT 58.801 40.000 0.00 0.00 0.00 2.40
177 178 5.580998 TCCCTAGTTTTAGAGAGCTGAGAA 58.419 41.667 0.00 0.00 0.00 2.87
178 179 5.194473 TCCCTAGTTTTAGAGAGCTGAGA 57.806 43.478 0.00 0.00 0.00 3.27
179 180 5.514274 CTCCCTAGTTTTAGAGAGCTGAG 57.486 47.826 0.00 0.00 26.93 3.35
184 185 6.378848 ACACTAAGCTCCCTAGTTTTAGAGAG 59.621 42.308 0.00 0.00 35.48 3.20
185 186 6.254522 ACACTAAGCTCCCTAGTTTTAGAGA 58.745 40.000 0.00 0.00 31.73 3.10
186 187 6.532988 ACACTAAGCTCCCTAGTTTTAGAG 57.467 41.667 0.00 0.00 31.73 2.43
187 188 6.930068 AACACTAAGCTCCCTAGTTTTAGA 57.070 37.500 0.00 0.00 31.73 2.10
188 189 7.981102 AAAACACTAAGCTCCCTAGTTTTAG 57.019 36.000 12.38 0.03 36.35 1.85
190 191 9.668497 CTATAAAACACTAAGCTCCCTAGTTTT 57.332 33.333 16.06 16.06 39.88 2.43
191 192 8.265764 CCTATAAAACACTAAGCTCCCTAGTTT 58.734 37.037 0.00 0.00 0.00 2.66
192 193 7.622479 TCCTATAAAACACTAAGCTCCCTAGTT 59.378 37.037 0.00 0.00 0.00 2.24
193 194 7.130775 TCCTATAAAACACTAAGCTCCCTAGT 58.869 38.462 0.00 0.00 0.00 2.57
194 195 7.598759 TCCTATAAAACACTAAGCTCCCTAG 57.401 40.000 0.00 0.00 0.00 3.02
195 196 7.472945 GCATCCTATAAAACACTAAGCTCCCTA 60.473 40.741 0.00 0.00 0.00 3.53
196 197 6.689177 GCATCCTATAAAACACTAAGCTCCCT 60.689 42.308 0.00 0.00 0.00 4.20
197 198 5.470437 GCATCCTATAAAACACTAAGCTCCC 59.530 44.000 0.00 0.00 0.00 4.30
198 199 6.055588 TGCATCCTATAAAACACTAAGCTCC 58.944 40.000 0.00 0.00 0.00 4.70
199 200 6.986817 TCTGCATCCTATAAAACACTAAGCTC 59.013 38.462 0.00 0.00 0.00 4.09
200 201 6.889198 TCTGCATCCTATAAAACACTAAGCT 58.111 36.000 0.00 0.00 0.00 3.74
201 202 6.203723 CCTCTGCATCCTATAAAACACTAAGC 59.796 42.308 0.00 0.00 0.00 3.09
202 203 7.275920 ACCTCTGCATCCTATAAAACACTAAG 58.724 38.462 0.00 0.00 0.00 2.18
203 204 7.093068 TGACCTCTGCATCCTATAAAACACTAA 60.093 37.037 0.00 0.00 0.00 2.24
204 205 6.382859 TGACCTCTGCATCCTATAAAACACTA 59.617 38.462 0.00 0.00 0.00 2.74
205 206 5.189736 TGACCTCTGCATCCTATAAAACACT 59.810 40.000 0.00 0.00 0.00 3.55
206 207 5.428253 TGACCTCTGCATCCTATAAAACAC 58.572 41.667 0.00 0.00 0.00 3.32
207 208 5.425217 TCTGACCTCTGCATCCTATAAAACA 59.575 40.000 0.00 0.00 0.00 2.83
208 209 5.918608 TCTGACCTCTGCATCCTATAAAAC 58.081 41.667 0.00 0.00 0.00 2.43
209 210 6.100279 ACATCTGACCTCTGCATCCTATAAAA 59.900 38.462 0.00 0.00 0.00 1.52
210 211 5.604231 ACATCTGACCTCTGCATCCTATAAA 59.396 40.000 0.00 0.00 0.00 1.40
211 212 5.011431 CACATCTGACCTCTGCATCCTATAA 59.989 44.000 0.00 0.00 0.00 0.98
212 213 4.525874 CACATCTGACCTCTGCATCCTATA 59.474 45.833 0.00 0.00 0.00 1.31
213 214 3.324268 CACATCTGACCTCTGCATCCTAT 59.676 47.826 0.00 0.00 0.00 2.57
214 215 2.697229 CACATCTGACCTCTGCATCCTA 59.303 50.000 0.00 0.00 0.00 2.94
215 216 1.485480 CACATCTGACCTCTGCATCCT 59.515 52.381 0.00 0.00 0.00 3.24
216 217 1.209019 ACACATCTGACCTCTGCATCC 59.791 52.381 0.00 0.00 0.00 3.51
217 218 2.277969 CACACATCTGACCTCTGCATC 58.722 52.381 0.00 0.00 0.00 3.91
218 219 1.627329 ACACACATCTGACCTCTGCAT 59.373 47.619 0.00 0.00 0.00 3.96
219 220 1.051008 ACACACATCTGACCTCTGCA 58.949 50.000 0.00 0.00 0.00 4.41
220 221 2.175878 AACACACATCTGACCTCTGC 57.824 50.000 0.00 0.00 0.00 4.26
221 222 5.934043 TCAATAAACACACATCTGACCTCTG 59.066 40.000 0.00 0.00 0.00 3.35
222 223 6.114187 TCAATAAACACACATCTGACCTCT 57.886 37.500 0.00 0.00 0.00 3.69
223 224 5.934625 ACTCAATAAACACACATCTGACCTC 59.065 40.000 0.00 0.00 0.00 3.85
224 225 5.869579 ACTCAATAAACACACATCTGACCT 58.130 37.500 0.00 0.00 0.00 3.85
225 226 6.560253 AACTCAATAAACACACATCTGACC 57.440 37.500 0.00 0.00 0.00 4.02
226 227 7.417612 ACAAACTCAATAAACACACATCTGAC 58.582 34.615 0.00 0.00 0.00 3.51
227 228 7.566760 ACAAACTCAATAAACACACATCTGA 57.433 32.000 0.00 0.00 0.00 3.27
228 229 9.897744 AATACAAACTCAATAAACACACATCTG 57.102 29.630 0.00 0.00 0.00 2.90
261 262 9.097257 CAAAATGAAACACAATAAACAGGTTCT 57.903 29.630 0.00 0.00 0.00 3.01
262 263 9.092876 TCAAAATGAAACACAATAAACAGGTTC 57.907 29.630 0.00 0.00 0.00 3.62
263 264 9.442047 TTCAAAATGAAACACAATAAACAGGTT 57.558 25.926 0.00 0.00 32.71 3.50
264 265 9.612066 ATTCAAAATGAAACACAATAAACAGGT 57.388 25.926 0.00 0.00 40.12 4.00
290 291 9.658475 CGACGATTCATTTATTGGCTTTATTAA 57.342 29.630 0.00 0.00 0.00 1.40
291 292 8.832521 ACGACGATTCATTTATTGGCTTTATTA 58.167 29.630 0.00 0.00 0.00 0.98
292 293 7.703328 ACGACGATTCATTTATTGGCTTTATT 58.297 30.769 0.00 0.00 0.00 1.40
293 294 7.259290 ACGACGATTCATTTATTGGCTTTAT 57.741 32.000 0.00 0.00 0.00 1.40
294 295 6.508880 CGACGACGATTCATTTATTGGCTTTA 60.509 38.462 0.00 0.00 42.66 1.85
295 296 5.560966 ACGACGATTCATTTATTGGCTTT 57.439 34.783 0.00 0.00 0.00 3.51
296 297 4.260212 CGACGACGATTCATTTATTGGCTT 60.260 41.667 0.00 0.00 42.66 4.35
297 298 3.245284 CGACGACGATTCATTTATTGGCT 59.755 43.478 0.00 0.00 42.66 4.75
298 299 3.531982 CGACGACGATTCATTTATTGGC 58.468 45.455 0.00 0.00 42.66 4.52
299 300 3.531982 GCGACGACGATTCATTTATTGG 58.468 45.455 12.29 0.00 42.66 3.16
300 301 3.245284 AGGCGACGACGATTCATTTATTG 59.755 43.478 12.29 0.00 42.66 1.90
301 302 3.454375 AGGCGACGACGATTCATTTATT 58.546 40.909 12.29 0.00 42.66 1.40
302 303 3.093717 AGGCGACGACGATTCATTTAT 57.906 42.857 12.29 0.00 42.66 1.40
303 304 2.572191 AGGCGACGACGATTCATTTA 57.428 45.000 12.29 0.00 42.66 1.40
304 305 1.722011 AAGGCGACGACGATTCATTT 58.278 45.000 12.29 0.00 42.66 2.32
305 306 2.572191 TAAGGCGACGACGATTCATT 57.428 45.000 12.29 0.00 42.66 2.57
306 307 2.795175 ATAAGGCGACGACGATTCAT 57.205 45.000 12.29 0.00 42.66 2.57
307 308 2.572191 AATAAGGCGACGACGATTCA 57.428 45.000 12.29 0.00 42.66 2.57
308 309 5.219987 GCTATAAATAAGGCGACGACGATTC 60.220 44.000 12.29 0.00 42.66 2.52
309 310 4.620184 GCTATAAATAAGGCGACGACGATT 59.380 41.667 12.29 7.40 42.66 3.34
310 311 4.082895 AGCTATAAATAAGGCGACGACGAT 60.083 41.667 12.29 0.00 42.66 3.73
311 312 3.251729 AGCTATAAATAAGGCGACGACGA 59.748 43.478 12.29 0.00 42.66 4.20
312 313 3.562505 AGCTATAAATAAGGCGACGACG 58.437 45.455 2.12 2.12 42.93 5.12
313 314 5.902051 AAAGCTATAAATAAGGCGACGAC 57.098 39.130 0.00 0.00 0.00 4.34
314 315 5.174398 CGAAAAGCTATAAATAAGGCGACGA 59.826 40.000 0.00 0.00 0.00 4.20
315 316 5.363517 CGAAAAGCTATAAATAAGGCGACG 58.636 41.667 0.00 0.00 0.00 5.12
316 317 5.333875 CCCGAAAAGCTATAAATAAGGCGAC 60.334 44.000 0.00 0.00 0.00 5.19
317 318 4.753107 CCCGAAAAGCTATAAATAAGGCGA 59.247 41.667 0.00 0.00 0.00 5.54
318 319 4.083484 CCCCGAAAAGCTATAAATAAGGCG 60.083 45.833 0.00 0.00 0.00 5.52
319 320 4.321008 GCCCCGAAAAGCTATAAATAAGGC 60.321 45.833 0.00 0.00 0.00 4.35
320 321 5.048713 CAGCCCCGAAAAGCTATAAATAAGG 60.049 44.000 0.00 0.00 37.18 2.69
321 322 5.048713 CCAGCCCCGAAAAGCTATAAATAAG 60.049 44.000 0.00 0.00 37.18 1.73
322 323 4.825085 CCAGCCCCGAAAAGCTATAAATAA 59.175 41.667 0.00 0.00 37.18 1.40
323 324 4.394729 CCAGCCCCGAAAAGCTATAAATA 58.605 43.478 0.00 0.00 37.18 1.40
324 325 3.222603 CCAGCCCCGAAAAGCTATAAAT 58.777 45.455 0.00 0.00 37.18 1.40
325 326 2.650322 CCAGCCCCGAAAAGCTATAAA 58.350 47.619 0.00 0.00 37.18 1.40
326 327 1.133915 CCCAGCCCCGAAAAGCTATAA 60.134 52.381 0.00 0.00 37.18 0.98
327 328 0.472471 CCCAGCCCCGAAAAGCTATA 59.528 55.000 0.00 0.00 37.18 1.31
328 329 1.227383 CCCAGCCCCGAAAAGCTAT 59.773 57.895 0.00 0.00 37.18 2.97
329 330 0.910566 TACCCAGCCCCGAAAAGCTA 60.911 55.000 0.00 0.00 37.18 3.32
330 331 1.571773 ATACCCAGCCCCGAAAAGCT 61.572 55.000 0.00 0.00 40.89 3.74
331 332 0.181824 TATACCCAGCCCCGAAAAGC 59.818 55.000 0.00 0.00 0.00 3.51
332 333 2.951229 ATATACCCAGCCCCGAAAAG 57.049 50.000 0.00 0.00 0.00 2.27
333 334 3.558033 GAAATATACCCAGCCCCGAAAA 58.442 45.455 0.00 0.00 0.00 2.29
334 335 2.485835 CGAAATATACCCAGCCCCGAAA 60.486 50.000 0.00 0.00 0.00 3.46
335 336 1.071071 CGAAATATACCCAGCCCCGAA 59.929 52.381 0.00 0.00 0.00 4.30
336 337 0.682852 CGAAATATACCCAGCCCCGA 59.317 55.000 0.00 0.00 0.00 5.14
337 338 0.682852 TCGAAATATACCCAGCCCCG 59.317 55.000 0.00 0.00 0.00 5.73
338 339 1.697982 ACTCGAAATATACCCAGCCCC 59.302 52.381 0.00 0.00 0.00 5.80
339 340 3.577415 AGTACTCGAAATATACCCAGCCC 59.423 47.826 0.00 0.00 0.00 5.19
340 341 4.321824 GGAGTACTCGAAATATACCCAGCC 60.322 50.000 16.56 0.00 0.00 4.85
341 342 4.280174 TGGAGTACTCGAAATATACCCAGC 59.720 45.833 16.56 0.00 0.00 4.85
342 343 6.591750 ATGGAGTACTCGAAATATACCCAG 57.408 41.667 16.56 0.00 0.00 4.45
343 344 6.239487 CCAATGGAGTACTCGAAATATACCCA 60.239 42.308 16.56 5.97 0.00 4.51
344 345 6.164176 CCAATGGAGTACTCGAAATATACCC 58.836 44.000 16.56 0.00 0.00 3.69
345 346 6.164176 CCCAATGGAGTACTCGAAATATACC 58.836 44.000 16.56 0.72 0.00 2.73
346 347 6.164176 CCCCAATGGAGTACTCGAAATATAC 58.836 44.000 16.56 0.95 35.39 1.47
347 348 5.279809 GCCCCAATGGAGTACTCGAAATATA 60.280 44.000 16.56 0.00 35.39 0.86
348 349 4.505039 GCCCCAATGGAGTACTCGAAATAT 60.505 45.833 16.56 3.57 35.39 1.28
349 350 3.181458 GCCCCAATGGAGTACTCGAAATA 60.181 47.826 16.56 1.36 35.39 1.40
350 351 2.421529 GCCCCAATGGAGTACTCGAAAT 60.422 50.000 16.56 7.54 35.39 2.17
351 352 1.065709 GCCCCAATGGAGTACTCGAAA 60.066 52.381 16.56 5.47 35.39 3.46
352 353 0.539986 GCCCCAATGGAGTACTCGAA 59.460 55.000 16.56 8.00 35.39 3.71
353 354 0.325296 AGCCCCAATGGAGTACTCGA 60.325 55.000 16.56 13.50 35.39 4.04
354 355 0.105039 GAGCCCCAATGGAGTACTCG 59.895 60.000 16.56 2.79 35.39 4.18
355 356 0.470341 GGAGCCCCAATGGAGTACTC 59.530 60.000 14.87 14.87 35.39 2.59
356 357 1.338136 CGGAGCCCCAATGGAGTACT 61.338 60.000 0.00 0.00 35.39 2.73
374 375 0.866061 CTGGATCGGCTAACGTGTCG 60.866 60.000 0.00 0.00 44.69 4.35
381 382 1.441729 CCGCTTCTGGATCGGCTAA 59.558 57.895 0.00 0.00 36.53 3.09
382 383 2.498941 CCCGCTTCTGGATCGGCTA 61.499 63.158 0.00 0.00 41.68 3.93
413 414 1.609208 GGGATCCCGTTCATCCAATG 58.391 55.000 17.02 0.00 41.68 2.82
499 533 3.499737 CCGATGTGGAAGTGCGGC 61.500 66.667 0.00 0.00 42.00 6.53
581 656 4.749310 ACGAGCCGAGCCAAGCAG 62.749 66.667 1.50 0.00 0.00 4.24
605 680 8.568794 GGCACCAGAATAGGAAATAATTTCTAC 58.431 37.037 0.00 0.00 39.59 2.59
608 684 7.588497 AGGCACCAGAATAGGAAATAATTTC 57.412 36.000 0.00 0.00 38.94 2.17
677 802 1.455402 TGGCTTTGAACAGCAGGCA 60.455 52.632 7.77 7.77 42.10 4.75
678 803 1.006922 GTGGCTTTGAACAGCAGGC 60.007 57.895 0.00 0.00 42.10 4.85
679 804 0.031178 GTGTGGCTTTGAACAGCAGG 59.969 55.000 0.00 0.00 42.10 4.85
681 806 1.391157 GGGTGTGGCTTTGAACAGCA 61.391 55.000 7.23 0.00 44.59 4.41
682 807 1.363807 GGGTGTGGCTTTGAACAGC 59.636 57.895 0.00 0.00 42.61 4.40
685 810 0.893727 ATCGGGGTGTGGCTTTGAAC 60.894 55.000 0.00 0.00 0.00 3.18
686 811 0.608035 GATCGGGGTGTGGCTTTGAA 60.608 55.000 0.00 0.00 0.00 2.69
687 812 1.002624 GATCGGGGTGTGGCTTTGA 60.003 57.895 0.00 0.00 0.00 2.69
688 813 0.893270 TTGATCGGGGTGTGGCTTTG 60.893 55.000 0.00 0.00 0.00 2.77
689 814 0.039618 ATTGATCGGGGTGTGGCTTT 59.960 50.000 0.00 0.00 0.00 3.51
690 815 0.394352 GATTGATCGGGGTGTGGCTT 60.394 55.000 0.00 0.00 0.00 4.35
691 816 1.224592 GATTGATCGGGGTGTGGCT 59.775 57.895 0.00 0.00 0.00 4.75
692 817 1.077787 TGATTGATCGGGGTGTGGC 60.078 57.895 0.00 0.00 0.00 5.01
693 818 0.253044 ACTGATTGATCGGGGTGTGG 59.747 55.000 4.93 0.00 37.50 4.17
694 819 1.656652 GACTGATTGATCGGGGTGTG 58.343 55.000 4.93 0.00 37.50 3.82
695 820 0.541863 GGACTGATTGATCGGGGTGT 59.458 55.000 4.93 0.00 37.50 4.16
698 823 1.069823 CAGAGGACTGATTGATCGGGG 59.930 57.143 4.93 0.00 46.03 5.73
722 847 2.095263 GTGTGTGTGAGAGAGAGAGAGC 60.095 54.545 0.00 0.00 0.00 4.09
886 1040 2.095461 GATTTTGGGAGAAGGTGAGGC 58.905 52.381 0.00 0.00 0.00 4.70
1343 1505 3.103738 GCATGCATCAAAGACGATCAAC 58.896 45.455 14.21 0.00 0.00 3.18
1381 1549 0.844503 CGACGGCTGCGAATTACTAC 59.155 55.000 3.66 0.00 0.00 2.73
1382 1550 0.452987 ACGACGGCTGCGAATTACTA 59.547 50.000 14.80 0.00 0.00 1.82
1383 1551 0.801067 GACGACGGCTGCGAATTACT 60.801 55.000 14.80 0.00 0.00 2.24
1395 1563 3.667282 ACGACCACCTGACGACGG 61.667 66.667 0.00 0.00 0.00 4.79
1399 1567 4.293648 TGCCACGACCACCTGACG 62.294 66.667 0.00 0.00 0.00 4.35
1438 1610 3.443681 AGAAAAATCGGATGCGGAAATGT 59.556 39.130 6.82 0.00 0.00 2.71
1672 3207 1.967319 ACAATCAACAAGTGACGGCT 58.033 45.000 0.00 0.00 39.72 5.52
1903 6777 1.259609 TGCCAGCCCAAGATTCTTTG 58.740 50.000 0.00 0.00 0.00 2.77
1964 6838 5.803461 GCTTGTTCCAAACTTCTTTAACGTT 59.197 36.000 5.88 5.88 0.00 3.99
1999 6873 6.831976 AGTGAAAAGATATAGGCCTCGATTT 58.168 36.000 9.68 3.39 0.00 2.17
2004 6878 5.844004 TCGAAGTGAAAAGATATAGGCCTC 58.156 41.667 9.68 0.00 0.00 4.70
2005 6879 5.871396 TCGAAGTGAAAAGATATAGGCCT 57.129 39.130 11.78 11.78 0.00 5.19
2006 6880 7.497925 AAATCGAAGTGAAAAGATATAGGCC 57.502 36.000 0.00 0.00 0.00 5.19
2053 6928 2.084546 GAAGTGAAAATGTCCCCCGAG 58.915 52.381 0.00 0.00 0.00 4.63
2075 6950 0.106519 GTATGGGTGATTGGGCAGCT 60.107 55.000 0.00 0.00 36.56 4.24
2104 6979 3.512680 ACTACCGCGAATCAGAGAAAAG 58.487 45.455 8.23 0.00 0.00 2.27
2118 6993 5.278120 GGAGATCTCTAAGAAGAACTACCGC 60.278 48.000 21.81 0.00 29.47 5.68
2122 6997 6.668645 AGCAGGAGATCTCTAAGAAGAACTA 58.331 40.000 21.81 0.00 29.47 2.24
2151 7026 3.000971 GCGTCTACTTGATGTAAACGAGC 60.001 47.826 8.30 0.00 45.44 5.03
2166 7041 3.445857 GACCCATAGTCTTTGCGTCTAC 58.554 50.000 2.00 0.00 42.69 2.59
2214 7089 0.108329 TGTAGTGCTTTAGCGAGGCC 60.108 55.000 0.00 0.00 45.83 5.19
2215 7090 1.941325 ATGTAGTGCTTTAGCGAGGC 58.059 50.000 0.00 0.00 45.83 4.70
2216 7091 2.535984 CGAATGTAGTGCTTTAGCGAGG 59.464 50.000 0.00 0.00 45.83 4.63
2224 7099 2.106683 GCGGCCGAATGTAGTGCTT 61.107 57.895 33.48 0.00 0.00 3.91
2270 7145 5.847111 ACACAAGGTTTAAGAAACTTCCC 57.153 39.130 2.39 0.00 40.78 3.97
2289 7164 3.703286 AACCTTGCCGAAACTAAACAC 57.297 42.857 0.00 0.00 0.00 3.32
2296 7171 2.570442 TTCACAAACCTTGCCGAAAC 57.430 45.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.