Multiple sequence alignment - TraesCS2D01G446700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G446700 chr2D 100.000 4729 0 0 1 4729 556937707 556942435 0.000000e+00 8733
1 TraesCS2D01G446700 chr2D 85.902 305 35 7 513 812 12301861 12302162 7.640000e-83 318
2 TraesCS2D01G446700 chr2D 85.479 303 41 3 513 812 534061480 534061178 3.550000e-81 313
3 TraesCS2D01G446700 chr2A 90.299 3948 243 86 74 3943 696914102 696917987 0.000000e+00 5040
4 TraesCS2D01G446700 chr2A 86.408 309 35 6 516 820 642587132 642586827 9.810000e-87 331
5 TraesCS2D01G446700 chr2A 82.353 425 32 20 4048 4469 696918161 696918545 3.530000e-86 329
6 TraesCS2D01G446700 chr2A 82.520 246 28 5 4499 4729 696918614 696918859 8.020000e-48 202
7 TraesCS2D01G446700 chr2B 94.957 1983 79 13 1777 3742 664212237 664214215 0.000000e+00 3088
8 TraesCS2D01G446700 chr2B 91.033 881 46 24 824 1691 664210811 664211671 0.000000e+00 1158
9 TraesCS2D01G446700 chr2B 84.409 372 29 13 4102 4469 664214657 664215003 5.860000e-89 339
10 TraesCS2D01G446700 chr2B 92.920 113 8 0 4617 4729 664215303 664215415 1.050000e-36 165
11 TraesCS2D01G446700 chr5D 87.869 305 33 3 515 816 51198375 51198072 5.820000e-94 355
12 TraesCS2D01G446700 chr7A 86.971 307 36 3 510 814 680684198 680684502 4.530000e-90 342
13 TraesCS2D01G446700 chr3A 85.358 321 37 9 508 819 589179866 589179547 1.640000e-84 324
14 TraesCS2D01G446700 chr4A 86.689 293 33 4 513 800 591931754 591931463 2.120000e-83 320
15 TraesCS2D01G446700 chr4B 85.574 305 39 4 513 813 15617371 15617674 9.880000e-82 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G446700 chr2D 556937707 556942435 4728 False 8733.0 8733 100.000000 1 4729 1 chr2D.!!$F2 4728
1 TraesCS2D01G446700 chr2A 696914102 696918859 4757 False 1857.0 5040 85.057333 74 4729 3 chr2A.!!$F1 4655
2 TraesCS2D01G446700 chr2B 664210811 664215415 4604 False 1187.5 3088 90.829750 824 4729 4 chr2B.!!$F1 3905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 253 0.100503 ACGCAGGAAAGCACAAACAC 59.899 50.000 0.00 0.0 0.00 3.32 F
797 810 0.108138 ATGAGTGCTTGCGTCCCTAC 60.108 55.000 0.00 0.0 0.00 3.18 F
804 817 0.108992 CTTGCGTCCCTACTGCGTTA 60.109 55.000 0.00 0.0 0.00 3.18 F
1440 1494 0.441145 ATTCGCGTACTTTTCGTGGC 59.559 50.000 5.77 0.0 38.95 5.01 F
1906 2448 1.208614 GCCTTGAAACAGCAGCTCG 59.791 57.895 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1698 0.179009 ACGATGGCTTGGATCCATGG 60.179 55.000 24.74 17.39 43.90 3.66 R
1703 1761 1.076513 ACAACCACTAATTCCACCCCC 59.923 52.381 0.00 0.00 0.00 5.40 R
2383 2938 1.202915 TCTCAAGATGGCCACTGCAAA 60.203 47.619 8.16 0.00 40.13 3.68 R
2832 3388 0.529378 GGCAACCTGGAAATGCAGAG 59.471 55.000 19.61 0.00 41.80 3.35 R
3804 4390 0.035317 ACTGGCGAGCAGATTGAACA 59.965 50.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.664677 ACACCACTGCTCGTCGGC 62.665 66.667 0.00 0.00 0.00 5.54
34 35 4.135153 CGAGGGACACCGAGGCAG 62.135 72.222 0.00 0.00 43.47 4.85
35 36 3.775654 GAGGGACACCGAGGCAGG 61.776 72.222 0.00 0.00 43.47 4.85
38 39 4.767255 GGACACCGAGGCAGGCAG 62.767 72.222 0.00 0.00 33.69 4.85
39 40 3.695606 GACACCGAGGCAGGCAGA 61.696 66.667 0.00 0.00 33.69 4.26
40 41 3.941657 GACACCGAGGCAGGCAGAC 62.942 68.421 0.00 0.00 33.69 3.51
43 44 3.449227 CCGAGGCAGGCAGACGTA 61.449 66.667 0.00 0.00 0.00 3.57
44 45 2.786495 CCGAGGCAGGCAGACGTAT 61.786 63.158 0.00 0.00 0.00 3.06
45 46 1.141881 CGAGGCAGGCAGACGTATT 59.858 57.895 0.00 0.00 0.00 1.89
46 47 1.148157 CGAGGCAGGCAGACGTATTG 61.148 60.000 0.00 0.00 0.00 1.90
47 48 0.175760 GAGGCAGGCAGACGTATTGA 59.824 55.000 3.87 0.00 0.00 2.57
48 49 0.833287 AGGCAGGCAGACGTATTGAT 59.167 50.000 3.87 0.00 0.00 2.57
49 50 0.940126 GGCAGGCAGACGTATTGATG 59.060 55.000 3.87 3.17 0.00 3.07
50 51 1.656652 GCAGGCAGACGTATTGATGT 58.343 50.000 3.87 0.00 0.00 3.06
51 52 1.328680 GCAGGCAGACGTATTGATGTG 59.671 52.381 3.87 0.00 0.00 3.21
52 53 2.621338 CAGGCAGACGTATTGATGTGT 58.379 47.619 3.87 0.00 0.00 3.72
53 54 3.780902 CAGGCAGACGTATTGATGTGTA 58.219 45.455 3.87 0.00 0.00 2.90
54 55 4.180817 CAGGCAGACGTATTGATGTGTAA 58.819 43.478 3.87 0.00 0.00 2.41
55 56 4.629634 CAGGCAGACGTATTGATGTGTAAA 59.370 41.667 3.87 0.00 0.00 2.01
56 57 4.630069 AGGCAGACGTATTGATGTGTAAAC 59.370 41.667 3.87 0.00 0.00 2.01
57 58 4.390603 GGCAGACGTATTGATGTGTAAACA 59.609 41.667 3.87 0.00 0.00 2.83
58 59 5.106869 GGCAGACGTATTGATGTGTAAACAA 60.107 40.000 3.87 0.00 0.00 2.83
59 60 6.015504 GCAGACGTATTGATGTGTAAACAAG 58.984 40.000 3.87 0.00 0.00 3.16
60 61 6.128661 GCAGACGTATTGATGTGTAAACAAGA 60.129 38.462 3.87 0.00 0.00 3.02
61 62 7.413000 GCAGACGTATTGATGTGTAAACAAGAT 60.413 37.037 3.87 0.00 0.00 2.40
62 63 8.443160 CAGACGTATTGATGTGTAAACAAGATT 58.557 33.333 0.00 0.00 0.00 2.40
63 64 8.443160 AGACGTATTGATGTGTAAACAAGATTG 58.557 33.333 0.00 0.00 0.00 2.67
64 65 8.317891 ACGTATTGATGTGTAAACAAGATTGA 57.682 30.769 0.00 0.00 0.00 2.57
65 66 8.779303 ACGTATTGATGTGTAAACAAGATTGAA 58.221 29.630 0.00 0.00 0.00 2.69
66 67 9.605955 CGTATTGATGTGTAAACAAGATTGAAA 57.394 29.630 0.00 0.00 0.00 2.69
69 70 9.643693 ATTGATGTGTAAACAAGATTGAAATCC 57.356 29.630 0.00 0.00 36.04 3.01
70 71 7.304735 TGATGTGTAAACAAGATTGAAATCCG 58.695 34.615 0.00 0.00 36.04 4.18
71 72 5.457140 TGTGTAAACAAGATTGAAATCCGC 58.543 37.500 0.00 0.00 36.04 5.54
72 73 4.553429 GTGTAAACAAGATTGAAATCCGCG 59.447 41.667 0.00 0.00 36.04 6.46
76 77 5.365403 AACAAGATTGAAATCCGCGTTAA 57.635 34.783 4.92 0.00 36.04 2.01
110 111 3.645975 CCAACGTGCTCGCCGTTT 61.646 61.111 8.29 0.00 45.46 3.60
122 124 4.912766 TGCTCGCCGTTTAAATTTTTGTAG 59.087 37.500 0.00 0.00 0.00 2.74
158 160 5.730296 TCAAATCTCTCTATTCGGATCCC 57.270 43.478 6.06 0.00 0.00 3.85
166 168 4.288887 TCTCTATTCGGATCCCAGCTACTA 59.711 45.833 6.06 0.00 0.00 1.82
170 172 3.870538 TCGGATCCCAGCTACTACTAA 57.129 47.619 6.06 0.00 0.00 2.24
173 175 3.751245 CGGATCCCAGCTACTACTAACCT 60.751 52.174 6.06 0.00 0.00 3.50
185 187 5.946942 ACTACTAACCTAGTTTAAGGCCC 57.053 43.478 0.00 0.00 40.62 5.80
213 216 1.063649 ACGGCGACACGTAGCATAG 59.936 57.895 16.62 5.36 46.58 2.23
214 217 1.657487 CGGCGACACGTAGCATAGG 60.657 63.158 0.00 0.00 32.66 2.57
240 247 0.936297 CAAGCAACGCAGGAAAGCAC 60.936 55.000 0.00 0.00 0.00 4.40
246 253 0.100503 ACGCAGGAAAGCACAAACAC 59.899 50.000 0.00 0.00 0.00 3.32
256 263 2.094675 AGCACAAACACTCACTTTGCT 58.905 42.857 0.00 0.00 32.71 3.91
257 264 2.159338 AGCACAAACACTCACTTTGCTG 60.159 45.455 0.00 0.00 37.45 4.41
258 265 2.415893 GCACAAACACTCACTTTGCTGT 60.416 45.455 0.00 0.00 32.71 4.40
259 266 3.836949 CACAAACACTCACTTTGCTGTT 58.163 40.909 0.00 0.00 32.71 3.16
260 267 4.236935 CACAAACACTCACTTTGCTGTTT 58.763 39.130 0.00 0.00 37.32 2.83
261 268 4.685628 CACAAACACTCACTTTGCTGTTTT 59.314 37.500 0.00 0.00 35.20 2.43
262 269 5.861251 CACAAACACTCACTTTGCTGTTTTA 59.139 36.000 0.00 0.00 35.20 1.52
263 270 5.861787 ACAAACACTCACTTTGCTGTTTTAC 59.138 36.000 0.00 0.00 35.20 2.01
264 271 5.637006 AACACTCACTTTGCTGTTTTACA 57.363 34.783 0.00 0.00 0.00 2.41
273 280 3.927555 CTGTTTTACAGCTCCCCGA 57.072 52.632 0.00 0.00 39.62 5.14
274 281 1.726853 CTGTTTTACAGCTCCCCGAG 58.273 55.000 0.00 0.00 39.62 4.63
275 282 1.275291 CTGTTTTACAGCTCCCCGAGA 59.725 52.381 0.00 0.00 39.62 4.04
276 283 1.001633 TGTTTTACAGCTCCCCGAGAC 59.998 52.381 0.00 0.00 0.00 3.36
277 284 1.001633 GTTTTACAGCTCCCCGAGACA 59.998 52.381 0.00 0.00 0.00 3.41
290 297 1.355005 CGAGACAACACACACACACA 58.645 50.000 0.00 0.00 0.00 3.72
401 410 1.117150 AAGCGAGACCGGCCTAAATA 58.883 50.000 0.00 0.00 36.06 1.40
404 413 1.429463 CGAGACCGGCCTAAATATGC 58.571 55.000 0.00 0.00 0.00 3.14
414 423 1.873591 CCTAAATATGCAGTGCCCGAC 59.126 52.381 13.72 0.00 0.00 4.79
435 444 0.597377 CGCCACAAGCCAAAGGAAAC 60.597 55.000 0.00 0.00 38.78 2.78
452 461 3.588955 GAAACCTGGCCTAAAAAGCATG 58.411 45.455 3.32 0.00 0.00 4.06
463 472 7.124901 TGGCCTAAAAAGCATGTTTATTATCCA 59.875 33.333 3.32 0.00 25.17 3.41
464 473 7.653311 GGCCTAAAAAGCATGTTTATTATCCAG 59.347 37.037 0.00 0.00 25.17 3.86
465 474 7.169813 GCCTAAAAAGCATGTTTATTATCCAGC 59.830 37.037 0.00 0.00 25.17 4.85
475 484 6.090129 TGTTTATTATCCAGCGCAAAAGAAC 58.910 36.000 11.47 3.27 0.00 3.01
488 497 6.920758 AGCGCAAAAGAACACATGTTTATTTA 59.079 30.769 11.47 0.00 38.56 1.40
521 532 3.924073 ACAAAAAGAAACAGCGAACCAAC 59.076 39.130 0.00 0.00 0.00 3.77
524 535 1.308998 AGAAACAGCGAACCAACCTG 58.691 50.000 0.00 0.00 0.00 4.00
525 536 0.317854 GAAACAGCGAACCAACCTGC 60.318 55.000 0.00 0.00 0.00 4.85
527 538 3.726517 CAGCGAACCAACCTGCGG 61.727 66.667 0.00 0.00 0.00 5.69
534 545 1.234615 AACCAACCTGCGGTTCGATG 61.235 55.000 9.57 1.22 43.05 3.84
535 546 1.375396 CCAACCTGCGGTTCGATGA 60.375 57.895 9.57 0.00 43.05 2.92
544 555 2.949644 TGCGGTTCGATGATTAGAGAGA 59.050 45.455 0.00 0.00 0.00 3.10
554 565 6.428465 TCGATGATTAGAGAGACAGTGGTATC 59.572 42.308 0.00 0.00 35.48 2.24
567 578 1.073923 GTGGTATCCCCAGCCCATTAG 59.926 57.143 0.00 0.00 46.45 1.73
590 601 1.078848 GAAGTCCTGGTGCTCGCAT 60.079 57.895 0.00 0.00 0.00 4.73
595 606 1.599542 GTCCTGGTGCTCGCATAATTC 59.400 52.381 0.00 0.00 0.00 2.17
597 608 0.583438 CTGGTGCTCGCATAATTCCG 59.417 55.000 0.00 0.00 0.00 4.30
629 642 1.613270 ATTTTCGGCGATGCGTTTTC 58.387 45.000 11.76 0.00 0.00 2.29
635 648 1.154225 GCGATGCGTTTTCAGTGGG 60.154 57.895 0.00 0.00 0.00 4.61
638 651 0.169009 GATGCGTTTTCAGTGGGAGC 59.831 55.000 0.00 0.00 0.00 4.70
639 652 0.537143 ATGCGTTTTCAGTGGGAGCA 60.537 50.000 0.00 0.00 37.54 4.26
642 655 0.868406 CGTTTTCAGTGGGAGCAGAC 59.132 55.000 0.00 0.00 0.00 3.51
668 681 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
670 683 2.433145 ACGACGAGACGCCTACGA 60.433 61.111 0.00 0.00 43.93 3.43
677 690 1.595003 CGAGACGCCTACGATGACTTC 60.595 57.143 0.00 0.00 43.93 3.01
697 710 9.087424 TGACTTCGTAAATCTTAAGATGATGTG 57.913 33.333 18.61 13.21 34.49 3.21
710 723 1.078848 GATGTGCCGGCTCAGTCTT 60.079 57.895 32.06 18.34 0.00 3.01
717 730 0.737715 CCGGCTCAGTCTTTCGAAGG 60.738 60.000 0.00 0.00 0.00 3.46
720 733 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
727 740 4.328440 CAGTCTTTCGAAGGTGCTCATAAG 59.672 45.833 7.20 0.00 0.00 1.73
728 741 3.619038 GTCTTTCGAAGGTGCTCATAAGG 59.381 47.826 7.20 0.00 0.00 2.69
729 742 3.513912 TCTTTCGAAGGTGCTCATAAGGA 59.486 43.478 7.20 0.00 0.00 3.36
739 752 3.927142 GTGCTCATAAGGATACGGTATGC 59.073 47.826 11.25 11.25 46.39 3.14
740 753 3.179830 GCTCATAAGGATACGGTATGCG 58.820 50.000 13.03 0.88 46.39 4.73
746 759 1.066605 AGGATACGGTATGCGTGTGTC 59.933 52.381 13.03 0.00 46.39 3.67
747 760 1.484356 GATACGGTATGCGTGTGTCC 58.516 55.000 5.18 0.00 0.00 4.02
752 765 1.712401 GGTATGCGTGTGTCCGTTTA 58.288 50.000 0.00 0.00 0.00 2.01
760 773 3.120792 CGTGTGTCCGTTTATAGGGATG 58.879 50.000 0.00 0.00 40.25 3.51
766 779 5.068198 GTGTCCGTTTATAGGGATGAGTGTA 59.932 44.000 0.00 0.00 40.25 2.90
768 781 6.015688 TGTCCGTTTATAGGGATGAGTGTATC 60.016 42.308 0.00 0.00 40.25 2.24
769 782 5.479375 TCCGTTTATAGGGATGAGTGTATCC 59.521 44.000 0.00 0.00 44.82 2.59
771 784 5.169295 GTTTATAGGGATGAGTGTATCCGC 58.831 45.833 0.00 0.00 46.19 5.54
780 793 4.155310 TGAGTGTATCCGCGTATGTATG 57.845 45.455 4.92 0.00 0.00 2.39
782 795 4.083484 TGAGTGTATCCGCGTATGTATGAG 60.083 45.833 4.92 0.00 0.00 2.90
785 798 2.065993 ATCCGCGTATGTATGAGTGC 57.934 50.000 4.92 0.00 0.00 4.40
793 806 1.656652 ATGTATGAGTGCTTGCGTCC 58.343 50.000 0.00 0.00 0.00 4.79
794 807 0.391130 TGTATGAGTGCTTGCGTCCC 60.391 55.000 0.00 0.00 0.00 4.46
797 810 0.108138 ATGAGTGCTTGCGTCCCTAC 60.108 55.000 0.00 0.00 0.00 3.18
798 811 1.185618 TGAGTGCTTGCGTCCCTACT 61.186 55.000 0.00 0.00 0.00 2.57
800 813 2.047274 TGCTTGCGTCCCTACTGC 60.047 61.111 0.00 0.00 0.00 4.40
804 817 0.108992 CTTGCGTCCCTACTGCGTTA 60.109 55.000 0.00 0.00 0.00 3.18
848 863 1.661197 CGCCAACGCACAGCAAATT 60.661 52.632 0.00 0.00 34.03 1.82
864 879 8.693504 CACAGCAAATTGTTCAAGTTATTACAG 58.306 33.333 0.00 0.00 0.00 2.74
925 961 7.293828 GGAGAGAATATTCCAATCCTTTTCCT 58.706 38.462 11.92 0.00 33.55 3.36
935 971 4.141733 CCAATCCTTTTCCTCTCTCTCTCC 60.142 50.000 0.00 0.00 0.00 3.71
937 973 2.115427 CCTTTTCCTCTCTCTCTCCCC 58.885 57.143 0.00 0.00 0.00 4.81
1063 1102 1.456287 CCCTCCCCGAATTCCATCC 59.544 63.158 0.00 0.00 0.00 3.51
1081 1130 3.136641 TCCTATTTCTTCTGCCCCTCT 57.863 47.619 0.00 0.00 0.00 3.69
1141 1191 1.230819 AGGAGGAGGAGGAGGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
1295 1345 1.290955 CCGCAACCTCCACGAACTA 59.709 57.895 0.00 0.00 0.00 2.24
1312 1362 6.748658 CACGAACTACAAATCCTCACGTAATA 59.251 38.462 0.00 0.00 0.00 0.98
1318 1368 9.477484 ACTACAAATCCTCACGTAATAATCATC 57.523 33.333 0.00 0.00 0.00 2.92
1319 1369 9.476202 CTACAAATCCTCACGTAATAATCATCA 57.524 33.333 0.00 0.00 0.00 3.07
1325 1375 6.721668 TCCTCACGTAATAATCATCATCCTCT 59.278 38.462 0.00 0.00 0.00 3.69
1328 1378 7.378966 TCACGTAATAATCATCATCCTCTTCC 58.621 38.462 0.00 0.00 0.00 3.46
1333 1383 7.645132 AATAATCATCATCCTCTTCCTCCTT 57.355 36.000 0.00 0.00 0.00 3.36
1373 1427 3.103911 GTCGTCGGTTGCGTCAGG 61.104 66.667 0.00 0.00 0.00 3.86
1375 1429 4.351938 CGTCGGTTGCGTCAGGGA 62.352 66.667 0.00 0.00 0.00 4.20
1376 1430 2.029964 GTCGGTTGCGTCAGGGAA 59.970 61.111 0.00 0.00 0.00 3.97
1377 1431 2.027625 GTCGGTTGCGTCAGGGAAG 61.028 63.158 0.00 0.00 0.00 3.46
1378 1432 2.204461 TCGGTTGCGTCAGGGAAGA 61.204 57.895 0.00 0.00 0.00 2.87
1419 1473 1.080569 CGCATGCCACAAGTTTCCC 60.081 57.895 13.15 0.00 0.00 3.97
1430 1484 1.129811 CAAGTTTCCCCATTCGCGTAC 59.870 52.381 5.77 0.00 0.00 3.67
1440 1494 0.441145 ATTCGCGTACTTTTCGTGGC 59.559 50.000 5.77 0.00 38.95 5.01
1450 1504 4.853924 ACTTTTCGTGGCTTCATCATTT 57.146 36.364 0.00 0.00 0.00 2.32
1516 1570 4.920927 CGATTTGCGTTCCCTTAATTGTTT 59.079 37.500 0.00 0.00 34.64 2.83
1633 1690 4.961438 AGGTTTTCAATGCAGAAACCAT 57.039 36.364 25.61 15.03 37.24 3.55
1693 1751 7.272978 ACAGTTTATCGATGCTAGTTTATGGT 58.727 34.615 8.54 0.00 0.00 3.55
1850 2392 4.431416 TTGGGAATATATGAACTGCCGT 57.569 40.909 0.00 0.00 0.00 5.68
1899 2441 4.145052 GGGAATATAGGGCCTTGAAACAG 58.855 47.826 13.45 0.00 0.00 3.16
1906 2448 1.208614 GCCTTGAAACAGCAGCTCG 59.791 57.895 0.00 0.00 0.00 5.03
2014 2562 9.503399 GGTTCCCTGGACTAACTTATAATAATG 57.497 37.037 0.00 0.00 0.00 1.90
2441 2996 1.935933 CCGTACAGGTGTTGATAGGC 58.064 55.000 0.00 0.00 34.51 3.93
2699 3255 7.602265 GCACCAATATTAGTCAATGTGGTTTTT 59.398 33.333 0.00 0.00 39.80 1.94
2748 3304 4.023291 TCTTAAATTTCTGTGGGGATGCC 58.977 43.478 0.00 0.00 0.00 4.40
2753 3309 2.806945 TTCTGTGGGGATGCCTAAAG 57.193 50.000 2.19 0.81 0.00 1.85
2811 3367 6.906659 TCCTTTAGAACTGTGTAGTAACTCG 58.093 40.000 0.00 0.00 35.69 4.18
2832 3388 4.394920 TCGTAGCTGAAAATGGGTGATTTC 59.605 41.667 0.00 0.00 32.76 2.17
2848 3404 4.219288 GTGATTTCTCTGCATTTCCAGGTT 59.781 41.667 0.00 0.00 33.64 3.50
2932 3488 4.381932 CCAAATACCTTCATCAACTTGGCC 60.382 45.833 0.00 0.00 0.00 5.36
2969 3525 3.054655 TGTGCCCTTCCATACCTTCTTAC 60.055 47.826 0.00 0.00 0.00 2.34
3038 3595 4.876679 GGGTAAGTTCCTTGCTTCAGATAC 59.123 45.833 0.00 0.00 0.00 2.24
3102 3659 2.224744 TGCTAACTTCAATCCCACTGCA 60.225 45.455 0.00 0.00 0.00 4.41
3145 3702 0.252881 TGGGATTGCTCTGGGAGAGT 60.253 55.000 2.68 0.00 44.12 3.24
3291 3848 2.359850 GGCGCCTCATGAACACCA 60.360 61.111 22.15 0.00 0.00 4.17
3405 3963 2.030893 CACATGGTTTGCGAGTTCACAT 60.031 45.455 0.00 0.00 0.00 3.21
3458 4017 4.944372 GTCCGCCTATCACCCGCG 62.944 72.222 0.00 0.00 45.32 6.46
3479 4038 3.853330 CGGAGATGTGCGTTGCCG 61.853 66.667 0.00 0.00 31.86 5.69
3496 4055 1.668751 GCCGTGAGAACACTGTTTCAA 59.331 47.619 0.00 0.00 43.99 2.69
3504 4063 4.874970 AGAACACTGTTTCAATTCATGGC 58.125 39.130 0.00 0.00 0.00 4.40
3510 4069 1.066215 GTTTCAATTCATGGCCACCCC 60.066 52.381 8.16 0.00 0.00 4.95
3738 4298 2.597510 GCTGTGCCGTTCCCCTTT 60.598 61.111 0.00 0.00 0.00 3.11
3739 4299 2.626780 GCTGTGCCGTTCCCCTTTC 61.627 63.158 0.00 0.00 0.00 2.62
3741 4301 0.537371 CTGTGCCGTTCCCCTTTCTT 60.537 55.000 0.00 0.00 0.00 2.52
3742 4302 0.821711 TGTGCCGTTCCCCTTTCTTG 60.822 55.000 0.00 0.00 0.00 3.02
3743 4303 1.901464 TGCCGTTCCCCTTTCTTGC 60.901 57.895 0.00 0.00 0.00 4.01
3745 4305 1.179174 GCCGTTCCCCTTTCTTGCTT 61.179 55.000 0.00 0.00 0.00 3.91
3759 4345 6.150140 CCTTTCTTGCTTCTTATGTGTAGCTT 59.850 38.462 0.00 0.00 34.77 3.74
3774 4360 4.216257 GTGTAGCTTGATTTTTCTGAGCCA 59.784 41.667 0.00 0.00 33.96 4.75
3775 4361 4.826733 TGTAGCTTGATTTTTCTGAGCCAA 59.173 37.500 0.00 0.00 33.96 4.52
3778 4364 3.256631 GCTTGATTTTTCTGAGCCAAGGA 59.743 43.478 0.00 0.00 33.60 3.36
3779 4365 4.802999 CTTGATTTTTCTGAGCCAAGGAC 58.197 43.478 0.00 0.00 0.00 3.85
3780 4366 3.831323 TGATTTTTCTGAGCCAAGGACA 58.169 40.909 0.00 0.00 0.00 4.02
3781 4367 3.569701 TGATTTTTCTGAGCCAAGGACAC 59.430 43.478 0.00 0.00 0.00 3.67
3782 4368 3.297134 TTTTTCTGAGCCAAGGACACT 57.703 42.857 0.00 0.00 0.00 3.55
3788 4374 1.768275 TGAGCCAAGGACACTTTCAGA 59.232 47.619 0.00 0.00 33.81 3.27
3794 4380 4.984785 GCCAAGGACACTTTCAGATTTTTC 59.015 41.667 0.00 0.00 33.81 2.29
3800 4386 9.579932 AAGGACACTTTCAGATTTTTCTATCTT 57.420 29.630 0.00 0.00 30.54 2.40
3804 4390 9.732130 ACACTTTCAGATTTTTCTATCTTAGCT 57.268 29.630 0.00 0.00 32.60 3.32
3817 4404 6.511416 TCTATCTTAGCTGTTCAATCTGCTC 58.489 40.000 0.00 0.00 41.46 4.26
3822 4409 0.725686 CTGTTCAATCTGCTCGCCAG 59.274 55.000 0.00 0.00 43.17 4.85
3826 4413 2.742053 GTTCAATCTGCTCGCCAGTTTA 59.258 45.455 3.40 0.00 42.38 2.01
3835 4422 2.223112 GCTCGCCAGTTTATGTCACATG 60.223 50.000 0.00 0.00 0.00 3.21
3898 4525 9.871238 CCATGATGATCTTTCTTTTTCTTTGAT 57.129 29.630 0.00 0.00 0.00 2.57
3921 4548 5.426689 TTTAGAGGACAGCATGATGAACT 57.573 39.130 19.60 14.52 39.69 3.01
3943 4572 9.346725 GAACTTGATGGATAGTGTCAATTTTTC 57.653 33.333 0.00 0.00 32.05 2.29
3946 4575 9.350357 CTTGATGGATAGTGTCAATTTTTCTTG 57.650 33.333 0.00 0.00 32.05 3.02
3947 4576 8.634335 TGATGGATAGTGTCAATTTTTCTTGA 57.366 30.769 0.00 0.00 32.84 3.02
3950 4579 9.918630 ATGGATAGTGTCAATTTTTCTTGAAAG 57.081 29.630 0.00 0.00 36.92 2.62
3961 4631 8.924691 CAATTTTTCTTGAAAGTGAGTGTCAAA 58.075 29.630 0.00 0.00 36.90 2.69
3973 4643 3.068024 TGAGTGTCAAATTTTGGACCAGC 59.932 43.478 9.18 1.66 33.09 4.85
3981 4679 6.018751 GTCAAATTTTGGACCAGCTTTTTCTC 60.019 38.462 9.18 0.00 0.00 2.87
3989 4687 4.503991 GGACCAGCTTTTTCTCAGAGAAGA 60.504 45.833 12.74 6.13 35.37 2.87
4009 4707 9.452065 GAGAAGAGTTTTCAGGTGAATTTTTAC 57.548 33.333 0.00 0.00 33.54 2.01
4013 4750 6.196571 AGTTTTCAGGTGAATTTTTACGTCG 58.803 36.000 0.00 0.00 33.54 5.12
4044 4781 7.669089 TTTTTGGAGAGGTGAATTTTTAGGT 57.331 32.000 0.00 0.00 0.00 3.08
4083 4820 1.911269 GACGGGCCAAAATGGGGTT 60.911 57.895 4.39 0.00 38.19 4.11
4088 4825 1.277842 GGGCCAAAATGGGGTTGTAAG 59.722 52.381 4.39 0.00 38.19 2.34
4099 4836 2.177016 GGGGTTGTAAGGCCCAGATAAT 59.823 50.000 0.00 0.00 46.59 1.28
4116 4879 9.753674 CCCAGATAATATTTAAGATGGGCTTTA 57.246 33.333 9.58 0.00 39.72 1.85
4150 4917 1.645402 ATGTAGTGGCCACCATCCCC 61.645 60.000 32.29 13.77 35.28 4.81
4167 4934 3.432588 CGCCGTCGTCTCCACTCT 61.433 66.667 0.00 0.00 0.00 3.24
4169 4936 2.627737 GCCGTCGTCTCCACTCTGT 61.628 63.158 0.00 0.00 0.00 3.41
4175 4942 1.348036 TCGTCTCCACTCTGTCAGAGA 59.652 52.381 32.07 12.61 45.07 3.10
4176 4943 1.466950 CGTCTCCACTCTGTCAGAGAC 59.533 57.143 32.07 19.49 45.07 3.36
4177 4944 1.816224 GTCTCCACTCTGTCAGAGACC 59.184 57.143 32.07 11.59 45.07 3.85
4178 4945 1.425448 TCTCCACTCTGTCAGAGACCA 59.575 52.381 32.07 15.48 45.07 4.02
4179 4946 1.818060 CTCCACTCTGTCAGAGACCAG 59.182 57.143 32.07 19.88 45.07 4.00
4180 4947 0.894141 CCACTCTGTCAGAGACCAGG 59.106 60.000 32.07 22.59 45.07 4.45
4181 4948 1.548809 CCACTCTGTCAGAGACCAGGA 60.549 57.143 32.07 0.00 45.07 3.86
4182 4949 1.818060 CACTCTGTCAGAGACCAGGAG 59.182 57.143 32.07 8.22 45.07 3.69
4183 4950 1.272425 ACTCTGTCAGAGACCAGGAGG 60.272 57.143 32.07 7.53 45.07 4.30
4184 4951 1.005332 CTCTGTCAGAGACCAGGAGGA 59.995 57.143 23.29 0.00 45.07 3.71
4185 4952 1.005332 TCTGTCAGAGACCAGGAGGAG 59.995 57.143 0.00 0.00 38.69 3.69
4186 4953 0.613292 TGTCAGAGACCAGGAGGAGC 60.613 60.000 0.00 0.00 38.69 4.70
4187 4954 0.613292 GTCAGAGACCAGGAGGAGCA 60.613 60.000 0.00 0.00 38.69 4.26
4310 5077 1.824230 CAGCTAGTGAGTCCAGCTTCT 59.176 52.381 7.96 0.00 42.95 2.85
4311 5078 2.233431 CAGCTAGTGAGTCCAGCTTCTT 59.767 50.000 7.96 0.00 42.95 2.52
4342 5110 1.145803 GTGTTCCGCTGTCTACCAAC 58.854 55.000 0.00 0.00 0.00 3.77
4355 5123 0.887387 TACCAACCGCTCTGTTTGCC 60.887 55.000 0.00 0.00 0.00 4.52
4356 5124 2.644992 CAACCGCTCTGTTTGCCC 59.355 61.111 0.00 0.00 0.00 5.36
4357 5125 2.597510 AACCGCTCTGTTTGCCCC 60.598 61.111 0.00 0.00 0.00 5.80
4362 5130 2.747855 CTCTGTTTGCCCCGCCTC 60.748 66.667 0.00 0.00 0.00 4.70
4363 5131 4.697756 TCTGTTTGCCCCGCCTCG 62.698 66.667 0.00 0.00 0.00 4.63
4367 5135 3.627952 TTTGCCCCGCCTCGTGTA 61.628 61.111 0.00 0.00 0.00 2.90
4368 5136 3.887335 TTTGCCCCGCCTCGTGTAC 62.887 63.158 0.00 0.00 0.00 2.90
4411 5193 0.793104 GTTGGCCGCGAGAAAAATCG 60.793 55.000 8.23 0.00 45.48 3.34
4423 5208 4.268884 CGAGAAAAATCGAAGGATCCAGAC 59.731 45.833 15.82 3.65 45.56 3.51
4424 5209 4.184629 AGAAAAATCGAAGGATCCAGACG 58.815 43.478 15.82 15.69 30.81 4.18
4429 5214 2.125512 AAGGATCCAGACGCACGC 60.126 61.111 15.82 0.00 0.00 5.34
4441 5226 3.711842 GCACGCTGCGTTGCTGTA 61.712 61.111 26.77 0.00 38.32 2.74
4442 5227 2.471607 CACGCTGCGTTGCTGTAG 59.528 61.111 26.77 8.57 38.32 2.74
4443 5228 2.021584 CACGCTGCGTTGCTGTAGA 61.022 57.895 26.77 0.00 38.32 2.59
4444 5229 1.300620 ACGCTGCGTTGCTGTAGAA 60.301 52.632 23.57 0.00 36.35 2.10
4455 5240 4.246458 GTTGCTGTAGAAGTAGAACCCAG 58.754 47.826 0.00 0.00 0.00 4.45
4469 5254 0.262285 ACCCAGACCTAGGTAGGAGC 59.738 60.000 26.94 11.22 46.63 4.70
4470 5255 0.824182 CCCAGACCTAGGTAGGAGCG 60.824 65.000 26.94 11.98 46.63 5.03
4477 5265 2.161030 CCTAGGTAGGAGCGGATGTAC 58.839 57.143 0.00 0.00 46.63 2.90
4479 5267 0.182061 AGGTAGGAGCGGATGTACGA 59.818 55.000 0.00 0.00 35.47 3.43
4480 5268 1.202903 AGGTAGGAGCGGATGTACGAT 60.203 52.381 0.00 0.00 35.47 3.73
4481 5269 1.612463 GGTAGGAGCGGATGTACGATT 59.388 52.381 0.00 0.00 35.47 3.34
4482 5270 2.351544 GGTAGGAGCGGATGTACGATTC 60.352 54.545 0.00 0.00 35.47 2.52
4494 5282 7.582352 CGGATGTACGATTCAGTAGAGAAATA 58.418 38.462 0.00 0.00 35.47 1.40
4497 5285 6.736123 TGTACGATTCAGTAGAGAAATAGCC 58.264 40.000 0.00 0.00 0.00 3.93
4498 5286 6.546403 TGTACGATTCAGTAGAGAAATAGCCT 59.454 38.462 0.00 0.00 0.00 4.58
4499 5287 6.079424 ACGATTCAGTAGAGAAATAGCCTC 57.921 41.667 0.00 0.00 0.00 4.70
4500 5288 5.150683 CGATTCAGTAGAGAAATAGCCTCG 58.849 45.833 0.00 0.00 35.88 4.63
4504 5292 4.098044 TCAGTAGAGAAATAGCCTCGTTGG 59.902 45.833 0.00 0.00 35.88 3.77
4506 5294 3.810310 AGAGAAATAGCCTCGTTGGAG 57.190 47.619 1.63 0.00 40.14 3.86
4507 5295 2.159028 AGAGAAATAGCCTCGTTGGAGC 60.159 50.000 1.63 0.00 39.06 4.70
4508 5296 0.931005 GAAATAGCCTCGTTGGAGCG 59.069 55.000 1.63 0.00 39.06 5.03
4509 5297 0.535335 AAATAGCCTCGTTGGAGCGA 59.465 50.000 1.63 0.00 39.06 4.93
4510 5298 0.179108 AATAGCCTCGTTGGAGCGAC 60.179 55.000 1.63 0.00 39.06 5.19
4511 5299 2.017559 ATAGCCTCGTTGGAGCGACC 62.018 60.000 1.63 0.00 39.06 4.79
4513 5301 3.744719 CCTCGTTGGAGCGACCGA 61.745 66.667 0.00 0.00 42.61 4.69
4514 5302 2.257371 CTCGTTGGAGCGACCGAA 59.743 61.111 0.00 0.00 42.61 4.30
4515 5303 1.801913 CTCGTTGGAGCGACCGAAG 60.802 63.158 0.00 0.00 42.61 3.79
4522 5346 2.603776 AGCGACCGAAGAGGGGTT 60.604 61.111 0.00 0.00 46.96 4.11
4523 5347 2.168666 GAGCGACCGAAGAGGGGTTT 62.169 60.000 0.00 0.00 46.96 3.27
4543 5367 5.341617 GTTTAGAGTCTCGATTAGTGTGGG 58.658 45.833 0.00 0.00 0.00 4.61
4556 5380 6.765989 CGATTAGTGTGGGATTTTAATGAGGA 59.234 38.462 0.00 0.00 0.00 3.71
4559 5383 8.893563 TTAGTGTGGGATTTTAATGAGGATTT 57.106 30.769 0.00 0.00 0.00 2.17
4561 5385 7.840931 AGTGTGGGATTTTAATGAGGATTTTC 58.159 34.615 0.00 0.00 0.00 2.29
4563 5387 8.966868 GTGTGGGATTTTAATGAGGATTTTCTA 58.033 33.333 0.00 0.00 0.00 2.10
4629 5570 4.481930 TCTGGTTGCGATTGTACTTTTG 57.518 40.909 0.00 0.00 0.00 2.44
4696 5637 1.001974 TGCTGTTACCATCGAAGCAGT 59.998 47.619 1.68 0.00 38.88 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.664677 GCCGACGAGCAGTGGTGT 62.665 66.667 0.00 0.00 0.00 4.16
17 18 4.135153 CTGCCTCGGTGTCCCTCG 62.135 72.222 0.00 0.00 0.00 4.63
18 19 3.775654 CCTGCCTCGGTGTCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
21 22 4.767255 CTGCCTGCCTCGGTGTCC 62.767 72.222 0.00 0.00 0.00 4.02
22 23 3.695606 TCTGCCTGCCTCGGTGTC 61.696 66.667 0.00 0.00 0.00 3.67
23 24 4.008933 GTCTGCCTGCCTCGGTGT 62.009 66.667 0.00 0.00 0.00 4.16
26 27 2.298158 AATACGTCTGCCTGCCTCGG 62.298 60.000 0.00 0.00 0.00 4.63
27 28 1.141881 AATACGTCTGCCTGCCTCG 59.858 57.895 0.00 0.00 0.00 4.63
28 29 0.175760 TCAATACGTCTGCCTGCCTC 59.824 55.000 0.00 0.00 0.00 4.70
29 30 0.833287 ATCAATACGTCTGCCTGCCT 59.167 50.000 0.00 0.00 0.00 4.75
30 31 0.940126 CATCAATACGTCTGCCTGCC 59.060 55.000 0.00 0.00 0.00 4.85
31 32 1.328680 CACATCAATACGTCTGCCTGC 59.671 52.381 0.00 0.00 0.00 4.85
32 33 2.621338 ACACATCAATACGTCTGCCTG 58.379 47.619 0.00 0.00 0.00 4.85
33 34 4.465632 TTACACATCAATACGTCTGCCT 57.534 40.909 0.00 0.00 0.00 4.75
34 35 4.390603 TGTTTACACATCAATACGTCTGCC 59.609 41.667 0.00 0.00 0.00 4.85
35 36 5.524511 TGTTTACACATCAATACGTCTGC 57.475 39.130 0.00 0.00 0.00 4.26
36 37 7.346208 TCTTGTTTACACATCAATACGTCTG 57.654 36.000 0.00 0.00 31.06 3.51
37 38 8.443160 CAATCTTGTTTACACATCAATACGTCT 58.557 33.333 0.00 0.00 31.06 4.18
38 39 8.440059 TCAATCTTGTTTACACATCAATACGTC 58.560 33.333 0.00 0.00 31.06 4.34
39 40 8.317891 TCAATCTTGTTTACACATCAATACGT 57.682 30.769 0.00 0.00 31.06 3.57
40 41 9.605955 TTTCAATCTTGTTTACACATCAATACG 57.394 29.630 0.00 0.00 31.06 3.06
43 44 9.643693 GGATTTCAATCTTGTTTACACATCAAT 57.356 29.630 0.00 0.00 35.73 2.57
44 45 7.807433 CGGATTTCAATCTTGTTTACACATCAA 59.193 33.333 0.00 0.00 35.73 2.57
45 46 7.304735 CGGATTTCAATCTTGTTTACACATCA 58.695 34.615 0.00 0.00 35.73 3.07
46 47 6.251376 GCGGATTTCAATCTTGTTTACACATC 59.749 38.462 0.00 0.00 35.73 3.06
47 48 6.092748 GCGGATTTCAATCTTGTTTACACAT 58.907 36.000 0.00 0.00 35.73 3.21
48 49 5.457140 GCGGATTTCAATCTTGTTTACACA 58.543 37.500 0.00 0.00 35.73 3.72
49 50 4.553429 CGCGGATTTCAATCTTGTTTACAC 59.447 41.667 0.00 0.00 35.73 2.90
50 51 4.214545 ACGCGGATTTCAATCTTGTTTACA 59.785 37.500 12.47 0.00 35.73 2.41
51 52 4.719040 ACGCGGATTTCAATCTTGTTTAC 58.281 39.130 12.47 0.00 35.73 2.01
52 53 5.365403 AACGCGGATTTCAATCTTGTTTA 57.635 34.783 12.47 0.00 35.73 2.01
53 54 3.915437 ACGCGGATTTCAATCTTGTTT 57.085 38.095 12.47 0.00 35.73 2.83
54 55 3.915437 AACGCGGATTTCAATCTTGTT 57.085 38.095 12.47 0.67 35.73 2.83
55 56 5.365403 TTTAACGCGGATTTCAATCTTGT 57.635 34.783 12.47 0.00 35.73 3.16
56 57 6.683090 TTTTTAACGCGGATTTCAATCTTG 57.317 33.333 12.47 0.00 35.73 3.02
76 77 3.462982 GTTGGCCTTCGTTTCCATTTTT 58.537 40.909 3.32 0.00 0.00 1.94
122 124 6.825721 AGAGAGATTTGATGTGACATTTACCC 59.174 38.462 0.00 0.00 0.00 3.69
158 160 7.201835 GCCTTAAACTAGGTTAGTAGTAGCTG 58.798 42.308 0.00 0.00 38.26 4.24
166 168 3.176411 ACGGGCCTTAAACTAGGTTAGT 58.824 45.455 0.84 0.00 41.73 2.24
170 172 2.502947 CCTAACGGGCCTTAAACTAGGT 59.497 50.000 0.84 0.00 37.63 3.08
173 175 2.169144 GCTCCTAACGGGCCTTAAACTA 59.831 50.000 0.84 0.00 34.39 2.24
185 187 2.879462 GTCGCCGTGCTCCTAACG 60.879 66.667 0.00 0.00 40.70 3.18
209 212 1.451927 TTGCTTGCTCCGCCCTATG 60.452 57.895 0.00 0.00 0.00 2.23
219 226 1.656441 CTTTCCTGCGTTGCTTGCT 59.344 52.632 0.00 0.00 0.00 3.91
228 235 0.381801 AGTGTTTGTGCTTTCCTGCG 59.618 50.000 0.00 0.00 35.36 5.18
231 238 3.004752 AGTGAGTGTTTGTGCTTTCCT 57.995 42.857 0.00 0.00 0.00 3.36
240 247 5.861251 TGTAAAACAGCAAAGTGAGTGTTTG 59.139 36.000 8.88 0.00 41.19 2.93
256 263 1.001633 GTCTCGGGGAGCTGTAAAACA 59.998 52.381 0.00 0.00 0.00 2.83
257 264 1.001633 TGTCTCGGGGAGCTGTAAAAC 59.998 52.381 0.00 0.00 0.00 2.43
258 265 1.344065 TGTCTCGGGGAGCTGTAAAA 58.656 50.000 0.00 0.00 0.00 1.52
259 266 1.001633 GTTGTCTCGGGGAGCTGTAAA 59.998 52.381 0.00 0.00 0.00 2.01
260 267 0.606604 GTTGTCTCGGGGAGCTGTAA 59.393 55.000 0.00 0.00 0.00 2.41
261 268 0.541063 TGTTGTCTCGGGGAGCTGTA 60.541 55.000 0.00 0.00 0.00 2.74
262 269 1.837051 TGTTGTCTCGGGGAGCTGT 60.837 57.895 0.00 0.00 0.00 4.40
263 270 1.374758 GTGTTGTCTCGGGGAGCTG 60.375 63.158 0.00 0.00 0.00 4.24
264 271 1.837051 TGTGTTGTCTCGGGGAGCT 60.837 57.895 0.00 0.00 0.00 4.09
265 272 1.668151 GTGTGTTGTCTCGGGGAGC 60.668 63.158 0.00 0.00 0.00 4.70
267 274 1.331399 TGTGTGTGTTGTCTCGGGGA 61.331 55.000 0.00 0.00 0.00 4.81
268 275 1.145156 TGTGTGTGTTGTCTCGGGG 59.855 57.895 0.00 0.00 0.00 5.73
269 276 0.461163 TGTGTGTGTGTTGTCTCGGG 60.461 55.000 0.00 0.00 0.00 5.14
270 277 0.650512 GTGTGTGTGTGTTGTCTCGG 59.349 55.000 0.00 0.00 0.00 4.63
271 278 1.060553 GTGTGTGTGTGTGTTGTCTCG 59.939 52.381 0.00 0.00 0.00 4.04
272 279 1.060553 CGTGTGTGTGTGTGTTGTCTC 59.939 52.381 0.00 0.00 0.00 3.36
273 280 1.075542 CGTGTGTGTGTGTGTTGTCT 58.924 50.000 0.00 0.00 0.00 3.41
274 281 0.096281 CCGTGTGTGTGTGTGTTGTC 59.904 55.000 0.00 0.00 0.00 3.18
275 282 1.917782 GCCGTGTGTGTGTGTGTTGT 61.918 55.000 0.00 0.00 0.00 3.32
276 283 1.226267 GCCGTGTGTGTGTGTGTTG 60.226 57.895 0.00 0.00 0.00 3.33
277 284 2.745785 CGCCGTGTGTGTGTGTGTT 61.746 57.895 0.00 0.00 0.00 3.32
298 305 1.722011 ATCGTGCGTTTTGTAGAGGG 58.278 50.000 0.00 0.00 0.00 4.30
350 358 4.519906 TTGTTTTTCCCCACTCTCTTCT 57.480 40.909 0.00 0.00 0.00 2.85
351 359 5.592104 TTTTGTTTTTCCCCACTCTCTTC 57.408 39.130 0.00 0.00 0.00 2.87
355 363 6.860790 TTACTTTTTGTTTTTCCCCACTCT 57.139 33.333 0.00 0.00 0.00 3.24
357 365 6.174760 GGTTTACTTTTTGTTTTTCCCCACT 58.825 36.000 0.00 0.00 0.00 4.00
358 366 5.938710 TGGTTTACTTTTTGTTTTTCCCCAC 59.061 36.000 0.00 0.00 0.00 4.61
359 367 6.123045 TGGTTTACTTTTTGTTTTTCCCCA 57.877 33.333 0.00 0.00 0.00 4.96
414 423 1.733402 TTCCTTTGGCTTGTGGCGTG 61.733 55.000 0.00 0.00 42.94 5.34
435 444 3.683365 AAACATGCTTTTTAGGCCAGG 57.317 42.857 5.01 0.00 0.00 4.45
452 461 6.033513 GTGTTCTTTTGCGCTGGATAATAAAC 59.966 38.462 9.73 2.58 0.00 2.01
463 472 2.869233 AACATGTGTTCTTTTGCGCT 57.131 40.000 9.73 0.00 31.64 5.92
464 473 5.574815 AATAAACATGTGTTCTTTTGCGC 57.425 34.783 0.00 0.00 37.25 6.09
488 497 8.379902 CGCTGTTTCTTTTTGTTTTTGAAGTAT 58.620 29.630 0.00 0.00 0.00 2.12
491 500 6.816377 TCGCTGTTTCTTTTTGTTTTTGAAG 58.184 32.000 0.00 0.00 0.00 3.02
504 513 1.676006 CAGGTTGGTTCGCTGTTTCTT 59.324 47.619 0.00 0.00 0.00 2.52
505 514 1.308998 CAGGTTGGTTCGCTGTTTCT 58.691 50.000 0.00 0.00 0.00 2.52
506 515 0.317854 GCAGGTTGGTTCGCTGTTTC 60.318 55.000 0.00 0.00 0.00 2.78
524 535 3.243101 TGTCTCTCTAATCATCGAACCGC 60.243 47.826 0.00 0.00 0.00 5.68
525 536 4.035792 ACTGTCTCTCTAATCATCGAACCG 59.964 45.833 0.00 0.00 0.00 4.44
527 538 5.163602 ACCACTGTCTCTCTAATCATCGAAC 60.164 44.000 0.00 0.00 0.00 3.95
530 541 4.909696 ACCACTGTCTCTCTAATCATCG 57.090 45.455 0.00 0.00 0.00 3.84
567 578 0.606673 GAGCACCAGGACTTCAACCC 60.607 60.000 0.00 0.00 0.00 4.11
572 583 0.175760 TATGCGAGCACCAGGACTTC 59.824 55.000 0.00 0.00 0.00 3.01
576 587 1.475034 GGAATTATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
577 588 0.947244 GGAATTATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
595 606 5.171337 CGCCGAAAATTCTGAAATAAATCGG 59.829 40.000 19.77 19.77 42.01 4.18
597 608 7.565789 GCATCGCCGAAAATTCTGAAATAAATC 60.566 37.037 0.00 0.00 0.00 2.17
629 642 1.374758 GGAACGTCTGCTCCCACTG 60.375 63.158 0.00 0.00 0.00 3.66
655 668 0.316032 GTCATCGTAGGCGTCTCGTC 60.316 60.000 0.00 0.00 39.49 4.20
668 681 8.561932 TCATCTTAAGATTTACGAAGTCATCG 57.438 34.615 15.49 0.00 44.39 3.84
670 683 9.823647 ACATCATCTTAAGATTTACGAAGTCAT 57.176 29.630 15.49 0.00 35.39 3.06
677 690 5.333339 CCGGCACATCATCTTAAGATTTACG 60.333 44.000 15.49 12.15 31.21 3.18
686 699 0.829990 TGAGCCGGCACATCATCTTA 59.170 50.000 31.54 0.00 0.00 2.10
695 708 2.383527 CGAAAGACTGAGCCGGCAC 61.384 63.158 31.54 24.60 0.00 5.01
697 710 1.355066 CTTCGAAAGACTGAGCCGGC 61.355 60.000 21.89 21.89 41.84 6.13
710 723 4.499188 CGTATCCTTATGAGCACCTTCGAA 60.499 45.833 0.00 0.00 0.00 3.71
717 730 3.927142 GCATACCGTATCCTTATGAGCAC 59.073 47.826 0.00 0.00 0.00 4.40
739 752 2.945447 TCCCTATAAACGGACACACG 57.055 50.000 0.00 0.00 40.31 4.49
740 753 4.142004 ACTCATCCCTATAAACGGACACAC 60.142 45.833 0.00 0.00 0.00 3.82
746 759 5.621555 CGGATACACTCATCCCTATAAACGG 60.622 48.000 0.00 0.00 41.38 4.44
747 760 5.399858 CGGATACACTCATCCCTATAAACG 58.600 45.833 0.00 0.00 41.38 3.60
752 765 1.819288 CGCGGATACACTCATCCCTAT 59.181 52.381 0.00 0.00 41.38 2.57
760 773 4.083431 ACTCATACATACGCGGATACACTC 60.083 45.833 12.47 0.00 0.00 3.51
766 779 1.613925 AGCACTCATACATACGCGGAT 59.386 47.619 12.47 3.58 0.00 4.18
768 781 1.522676 CAAGCACTCATACATACGCGG 59.477 52.381 12.47 0.00 0.00 6.46
769 782 1.071239 GCAAGCACTCATACATACGCG 60.071 52.381 3.53 3.53 0.00 6.01
771 784 2.193447 ACGCAAGCACTCATACATACG 58.807 47.619 0.00 0.00 45.62 3.06
780 793 0.737715 CAGTAGGGACGCAAGCACTC 60.738 60.000 0.00 0.00 45.62 3.51
782 795 2.391389 GCAGTAGGGACGCAAGCAC 61.391 63.158 0.00 0.00 45.62 4.40
785 798 0.108992 TAACGCAGTAGGGACGCAAG 60.109 55.000 0.00 0.00 45.00 4.01
793 806 6.721321 TGTTTCTTTCTTTTAACGCAGTAGG 58.279 36.000 0.00 0.00 45.00 3.18
794 807 7.855904 ACATGTTTCTTTCTTTTAACGCAGTAG 59.144 33.333 0.00 0.00 45.00 2.57
797 810 7.449934 AACATGTTTCTTTCTTTTAACGCAG 57.550 32.000 4.92 0.00 0.00 5.18
798 811 7.820044 AAACATGTTTCTTTCTTTTAACGCA 57.180 28.000 18.13 0.00 0.00 5.24
804 817 9.233232 GTGACGATAAACATGTTTCTTTCTTTT 57.767 29.630 26.46 2.97 34.23 2.27
848 863 9.078990 TCTCTTCTCTCTGTAATAACTTGAACA 57.921 33.333 0.00 0.00 0.00 3.18
864 879 3.306472 TTAGCCCTCCTCTCTTCTCTC 57.694 52.381 0.00 0.00 0.00 3.20
896 921 6.855375 AGGATTGGAATATTCTCTCCCTTT 57.145 37.500 14.95 1.98 0.00 3.11
899 924 6.491745 GGAAAAGGATTGGAATATTCTCTCCC 59.508 42.308 14.95 11.13 0.00 4.30
900 925 7.293828 AGGAAAAGGATTGGAATATTCTCTCC 58.706 38.462 14.95 16.15 0.00 3.71
901 926 8.217111 AGAGGAAAAGGATTGGAATATTCTCTC 58.783 37.037 14.95 9.04 0.00 3.20
902 927 8.111928 AGAGGAAAAGGATTGGAATATTCTCT 57.888 34.615 14.95 2.83 0.00 3.10
903 928 8.217111 AGAGAGGAAAAGGATTGGAATATTCTC 58.783 37.037 14.95 5.18 0.00 2.87
948 987 2.682494 CGGAGGAGGGAACGGGAA 60.682 66.667 0.00 0.00 0.00 3.97
1053 1092 5.242615 GGGCAGAAGAAATAGGATGGAATTC 59.757 44.000 0.00 0.00 0.00 2.17
1058 1097 2.444766 AGGGGCAGAAGAAATAGGATGG 59.555 50.000 0.00 0.00 0.00 3.51
1063 1102 3.044894 AGGAGAGGGGCAGAAGAAATAG 58.955 50.000 0.00 0.00 0.00 1.73
1110 1159 2.812619 CCTCCTCCTGCGGGAATCC 61.813 68.421 16.91 0.00 41.69 3.01
1111 1160 1.753368 CTCCTCCTCCTGCGGGAATC 61.753 65.000 16.91 0.00 41.69 2.52
1112 1161 1.764054 CTCCTCCTCCTGCGGGAAT 60.764 63.158 16.91 0.00 41.69 3.01
1113 1162 2.364317 CTCCTCCTCCTGCGGGAA 60.364 66.667 16.91 0.00 41.69 3.97
1114 1163 4.465446 CCTCCTCCTCCTGCGGGA 62.465 72.222 15.16 15.16 39.70 5.14
1118 1167 1.457455 CTCCTCCTCCTCCTCCTGC 60.457 68.421 0.00 0.00 0.00 4.85
1119 1168 1.232792 CCTCCTCCTCCTCCTCCTG 59.767 68.421 0.00 0.00 0.00 3.86
1141 1191 4.122670 CCTCCCTCCCCATCCCCA 62.123 72.222 0.00 0.00 0.00 4.96
1295 1345 8.908786 ATGATGATTATTACGTGAGGATTTGT 57.091 30.769 0.00 0.00 0.00 2.83
1312 1362 4.973856 TGAAGGAGGAAGAGGATGATGATT 59.026 41.667 0.00 0.00 0.00 2.57
1318 1368 5.370875 AGAAATGAAGGAGGAAGAGGATG 57.629 43.478 0.00 0.00 0.00 3.51
1319 1369 5.252630 ACAAGAAATGAAGGAGGAAGAGGAT 59.747 40.000 0.00 0.00 0.00 3.24
1325 1375 4.518970 CCGAAACAAGAAATGAAGGAGGAA 59.481 41.667 0.00 0.00 0.00 3.36
1328 1378 5.215160 CAACCGAAACAAGAAATGAAGGAG 58.785 41.667 0.00 0.00 0.00 3.69
1333 1383 3.490078 GCACCAACCGAAACAAGAAATGA 60.490 43.478 0.00 0.00 0.00 2.57
1373 1427 0.691332 AAAAGGACGGGAGGTCTTCC 59.309 55.000 0.00 0.00 45.35 3.46
1375 1429 0.320697 CGAAAAGGACGGGAGGTCTT 59.679 55.000 0.00 0.00 45.35 3.01
1376 1430 1.542187 CCGAAAAGGACGGGAGGTCT 61.542 60.000 0.00 0.00 45.35 3.85
1377 1431 1.079336 CCGAAAAGGACGGGAGGTC 60.079 63.158 0.00 0.00 45.65 3.85
1378 1432 3.066198 CCGAAAAGGACGGGAGGT 58.934 61.111 0.00 0.00 45.65 3.85
1409 1463 0.536460 ACGCGAATGGGGAAACTTGT 60.536 50.000 15.93 0.00 0.00 3.16
1419 1473 1.201877 CCACGAAAAGTACGCGAATGG 60.202 52.381 15.93 2.54 0.00 3.16
1430 1484 4.984161 ACAAAATGATGAAGCCACGAAAAG 59.016 37.500 0.00 0.00 0.00 2.27
1440 1494 1.468520 ACGGGCGACAAAATGATGAAG 59.531 47.619 0.00 0.00 0.00 3.02
1450 1504 0.609957 TAGAGGAAGACGGGCGACAA 60.610 55.000 0.00 0.00 0.00 3.18
1516 1570 4.492160 CCGACGCGCTCTAGGCAA 62.492 66.667 5.73 0.00 41.91 4.52
1633 1690 2.947243 GCTTGGATCCATGGAAAGCAGA 60.947 50.000 31.46 12.95 42.19 4.26
1641 1698 0.179009 ACGATGGCTTGGATCCATGG 60.179 55.000 24.74 17.39 43.90 3.66
1674 1732 4.020573 CCCCACCATAAACTAGCATCGATA 60.021 45.833 0.00 0.00 0.00 2.92
1677 1735 2.494059 CCCCACCATAAACTAGCATCG 58.506 52.381 0.00 0.00 0.00 3.84
1703 1761 1.076513 ACAACCACTAATTCCACCCCC 59.923 52.381 0.00 0.00 0.00 5.40
1704 1762 2.560981 CAACAACCACTAATTCCACCCC 59.439 50.000 0.00 0.00 0.00 4.95
1705 1763 3.227614 ACAACAACCACTAATTCCACCC 58.772 45.455 0.00 0.00 0.00 4.61
1706 1764 4.142038 AGACAACAACCACTAATTCCACC 58.858 43.478 0.00 0.00 0.00 4.61
1707 1765 5.063880 AGAGACAACAACCACTAATTCCAC 58.936 41.667 0.00 0.00 0.00 4.02
1708 1766 5.304686 AGAGACAACAACCACTAATTCCA 57.695 39.130 0.00 0.00 0.00 3.53
1709 1767 6.262273 TCAAAGAGACAACAACCACTAATTCC 59.738 38.462 0.00 0.00 0.00 3.01
1710 1768 7.259290 TCAAAGAGACAACAACCACTAATTC 57.741 36.000 0.00 0.00 0.00 2.17
1711 1769 7.823745 ATCAAAGAGACAACAACCACTAATT 57.176 32.000 0.00 0.00 0.00 1.40
1823 2365 8.023128 CGGCAGTTCATATATTCCCAAATTTAG 58.977 37.037 0.00 0.00 0.00 1.85
1837 2379 8.303876 AGTTTGAAATAAAACGGCAGTTCATAT 58.696 29.630 1.78 2.73 43.39 1.78
1899 2441 6.305693 AGATAAAACATTAATCCGAGCTGC 57.694 37.500 0.00 0.00 0.00 5.25
1942 2490 6.356556 TGCAGGCTTTAATTTGAGCTCTATA 58.643 36.000 16.19 0.08 38.89 1.31
1951 2499 6.746745 ATTGGAAATGCAGGCTTTAATTTG 57.253 33.333 0.00 0.00 0.00 2.32
2383 2938 1.202915 TCTCAAGATGGCCACTGCAAA 60.203 47.619 8.16 0.00 40.13 3.68
2441 2996 5.922739 TGAAAATGTACACAGCACAGTAG 57.077 39.130 0.00 0.00 0.00 2.57
2699 3255 8.731605 TGTTATGAAACTACACAGTGTTGAAAA 58.268 29.630 20.29 4.97 36.51 2.29
2717 3273 8.748412 CCCCACAGAAATTTAAGATGTTATGAA 58.252 33.333 0.00 0.00 0.00 2.57
2811 3367 5.649831 AGAGAAATCACCCATTTTCAGCTAC 59.350 40.000 0.00 0.00 34.60 3.58
2832 3388 0.529378 GGCAACCTGGAAATGCAGAG 59.471 55.000 19.61 0.00 41.80 3.35
2848 3404 3.701040 ACAGCTTTTCTCTTCTTTTGGCA 59.299 39.130 0.00 0.00 0.00 4.92
2906 3462 5.404946 CAAGTTGATGAAGGTATTTGGCAG 58.595 41.667 0.00 0.00 0.00 4.85
2969 3525 2.166459 TGAGACCGATAAGAGTTGCCAG 59.834 50.000 0.00 0.00 0.00 4.85
3024 3581 4.097437 ACATGCATTGTATCTGAAGCAAGG 59.903 41.667 0.00 5.33 36.57 3.61
3038 3595 3.192001 GGGCAGTATATGGACATGCATTG 59.808 47.826 0.00 0.00 38.63 2.82
3291 3848 1.203313 TGGGCTAGGTGACTCCTCTTT 60.203 52.381 0.00 0.00 44.42 2.52
3405 3963 2.658268 CGTGCTGCTGTGTCGTCA 60.658 61.111 0.00 0.00 0.00 4.35
3458 4017 2.742372 AACGCACATCTCCGGCAC 60.742 61.111 0.00 0.00 0.00 5.01
3479 4038 5.916883 CCATGAATTGAAACAGTGTTCTCAC 59.083 40.000 9.40 2.64 44.15 3.51
3510 4069 8.036575 AGATTCATTCATAACAAACAATGTGGG 58.963 33.333 0.00 0.00 42.99 4.61
3738 4298 5.793817 TCAAGCTACACATAAGAAGCAAGA 58.206 37.500 0.00 0.00 37.44 3.02
3739 4299 6.674694 ATCAAGCTACACATAAGAAGCAAG 57.325 37.500 0.00 0.00 37.44 4.01
3741 4301 7.452880 AAAATCAAGCTACACATAAGAAGCA 57.547 32.000 0.00 0.00 37.44 3.91
3742 4302 8.239998 AGAAAAATCAAGCTACACATAAGAAGC 58.760 33.333 0.00 0.00 35.16 3.86
3743 4303 9.552114 CAGAAAAATCAAGCTACACATAAGAAG 57.448 33.333 0.00 0.00 0.00 2.85
3745 4305 8.846943 TCAGAAAAATCAAGCTACACATAAGA 57.153 30.769 0.00 0.00 0.00 2.10
3759 4345 3.569701 GTGTCCTTGGCTCAGAAAAATCA 59.430 43.478 0.00 0.00 0.00 2.57
3774 4360 9.579932 AAGATAGAAAAATCTGAAAGTGTCCTT 57.420 29.630 0.00 0.00 36.34 3.36
3778 4364 9.732130 AGCTAAGATAGAAAAATCTGAAAGTGT 57.268 29.630 0.00 0.00 36.34 3.55
3779 4365 9.985318 CAGCTAAGATAGAAAAATCTGAAAGTG 57.015 33.333 0.00 0.00 36.34 3.16
3780 4366 9.732130 ACAGCTAAGATAGAAAAATCTGAAAGT 57.268 29.630 0.00 0.00 36.34 2.66
3794 4380 5.401972 CGAGCAGATTGAACAGCTAAGATAG 59.598 44.000 0.00 0.00 37.48 2.08
3800 4386 1.645034 GCGAGCAGATTGAACAGCTA 58.355 50.000 0.00 0.00 37.48 3.32
3804 4390 0.035317 ACTGGCGAGCAGATTGAACA 59.965 50.000 0.00 0.00 0.00 3.18
3817 4404 2.741517 TCACATGTGACATAAACTGGCG 59.258 45.455 24.56 0.00 34.57 5.69
3898 4525 5.809001 AGTTCATCATGCTGTCCTCTAAAA 58.191 37.500 0.00 0.00 0.00 1.52
3899 4526 5.426689 AGTTCATCATGCTGTCCTCTAAA 57.573 39.130 0.00 0.00 0.00 1.85
3900 4527 5.046376 TCAAGTTCATCATGCTGTCCTCTAA 60.046 40.000 0.00 0.00 0.00 2.10
3901 4528 4.467438 TCAAGTTCATCATGCTGTCCTCTA 59.533 41.667 0.00 0.00 0.00 2.43
3902 4529 3.262660 TCAAGTTCATCATGCTGTCCTCT 59.737 43.478 0.00 0.00 0.00 3.69
3905 4532 3.066342 CCATCAAGTTCATCATGCTGTCC 59.934 47.826 0.00 0.00 0.00 4.02
3921 4548 9.076781 TCAAGAAAAATTGACACTATCCATCAA 57.923 29.630 0.00 0.00 34.31 2.57
3943 4572 7.009540 GTCCAAAATTTGACACTCACTTTCAAG 59.990 37.037 7.37 0.00 31.11 3.02
3946 4575 5.748630 GGTCCAAAATTTGACACTCACTTTC 59.251 40.000 7.37 0.00 0.00 2.62
3947 4576 5.186797 TGGTCCAAAATTTGACACTCACTTT 59.813 36.000 7.37 0.00 0.00 2.66
3950 4579 4.610945 CTGGTCCAAAATTTGACACTCAC 58.389 43.478 7.37 0.00 0.00 3.51
3961 4631 4.895297 TCTGAGAAAAAGCTGGTCCAAAAT 59.105 37.500 0.00 0.00 0.00 1.82
3973 4643 7.281999 ACCTGAAAACTCTTCTCTGAGAAAAAG 59.718 37.037 19.73 19.84 33.19 2.27
3981 4679 6.874288 AATTCACCTGAAAACTCTTCTCTG 57.126 37.500 0.00 0.00 37.61 3.35
3989 4687 6.196571 CGACGTAAAAATTCACCTGAAAACT 58.803 36.000 0.00 0.00 37.61 2.66
4025 4762 4.396478 GCTGACCTAAAAATTCACCTCTCC 59.604 45.833 0.00 0.00 0.00 3.71
4026 4763 5.249420 AGCTGACCTAAAAATTCACCTCTC 58.751 41.667 0.00 0.00 0.00 3.20
4027 4764 5.248380 AGCTGACCTAAAAATTCACCTCT 57.752 39.130 0.00 0.00 0.00 3.69
4034 4771 6.779860 TCTGACCTTAGCTGACCTAAAAATT 58.220 36.000 0.00 0.00 35.68 1.82
4036 4773 5.818678 TCTGACCTTAGCTGACCTAAAAA 57.181 39.130 0.00 0.00 35.68 1.94
4042 4779 5.059833 CCAAATATCTGACCTTAGCTGACC 58.940 45.833 0.00 0.00 0.00 4.02
4044 4781 5.451937 CGTCCAAATATCTGACCTTAGCTGA 60.452 44.000 0.00 0.00 0.00 4.26
4076 4813 3.945874 TGGGCCTTACAACCCCAT 58.054 55.556 4.53 0.00 46.43 4.00
4083 4820 9.739276 CATCTTAAATATTATCTGGGCCTTACA 57.261 33.333 4.53 0.00 0.00 2.41
4099 4836 5.596772 GGCCAGTTAAAGCCCATCTTAAATA 59.403 40.000 0.00 0.00 43.76 1.40
4150 4917 3.432588 AGAGTGGAGACGACGGCG 61.433 66.667 10.39 10.39 44.79 6.46
4158 4925 1.425448 TGGTCTCTGACAGAGTGGAGA 59.575 52.381 27.62 9.47 42.83 3.71
4167 4934 0.613292 GCTCCTCCTGGTCTCTGACA 60.613 60.000 0.00 0.00 33.68 3.58
4169 4936 0.613292 GTGCTCCTCCTGGTCTCTGA 60.613 60.000 0.00 0.00 34.23 3.27
4174 4941 3.695606 TGCGTGCTCCTCCTGGTC 61.696 66.667 0.00 0.00 34.23 4.02
4175 4942 4.008933 GTGCGTGCTCCTCCTGGT 62.009 66.667 0.00 0.00 34.23 4.00
4310 5077 2.733858 GCGGAACACAAACAGCAGAAAA 60.734 45.455 0.00 0.00 0.00 2.29
4311 5078 1.202245 GCGGAACACAAACAGCAGAAA 60.202 47.619 0.00 0.00 0.00 2.52
4355 5123 2.781595 AAAGCAGTACACGAGGCGGG 62.782 60.000 0.00 0.00 35.82 6.13
4356 5124 1.374252 AAAGCAGTACACGAGGCGG 60.374 57.895 0.00 0.00 0.00 6.13
4357 5125 1.626654 CCAAAGCAGTACACGAGGCG 61.627 60.000 0.00 0.00 0.00 5.52
4358 5126 1.912371 GCCAAAGCAGTACACGAGGC 61.912 60.000 0.00 0.00 39.53 4.70
4359 5127 1.626654 CGCCAAAGCAGTACACGAGG 61.627 60.000 0.00 0.00 39.83 4.63
4360 5128 1.626654 CCGCCAAAGCAGTACACGAG 61.627 60.000 0.00 0.00 39.83 4.18
4361 5129 1.666553 CCGCCAAAGCAGTACACGA 60.667 57.895 0.00 0.00 39.83 4.35
4362 5130 1.019278 ATCCGCCAAAGCAGTACACG 61.019 55.000 0.00 0.00 39.83 4.49
4363 5131 1.135689 CAATCCGCCAAAGCAGTACAC 60.136 52.381 0.00 0.00 39.83 2.90
4364 5132 1.164411 CAATCCGCCAAAGCAGTACA 58.836 50.000 0.00 0.00 39.83 2.90
4365 5133 0.451783 CCAATCCGCCAAAGCAGTAC 59.548 55.000 0.00 0.00 39.83 2.73
4366 5134 0.679640 CCCAATCCGCCAAAGCAGTA 60.680 55.000 0.00 0.00 39.83 2.74
4367 5135 1.978617 CCCAATCCGCCAAAGCAGT 60.979 57.895 0.00 0.00 39.83 4.40
4368 5136 2.713967 CCCCAATCCGCCAAAGCAG 61.714 63.158 0.00 0.00 39.83 4.24
4411 5193 2.167861 GCGTGCGTCTGGATCCTTC 61.168 63.158 14.23 2.44 0.00 3.46
4424 5209 3.635734 CTACAGCAACGCAGCGTGC 62.636 63.158 23.78 24.86 39.99 5.34
4429 5214 3.217599 TCTACTTCTACAGCAACGCAG 57.782 47.619 0.00 0.00 0.00 5.18
4433 5218 4.021368 TCTGGGTTCTACTTCTACAGCAAC 60.021 45.833 0.00 0.00 0.00 4.17
4435 5220 3.510360 GTCTGGGTTCTACTTCTACAGCA 59.490 47.826 0.00 0.00 0.00 4.41
4439 5224 4.888823 CCTAGGTCTGGGTTCTACTTCTAC 59.111 50.000 0.00 0.00 0.00 2.59
4440 5225 4.543337 ACCTAGGTCTGGGTTCTACTTCTA 59.457 45.833 9.21 0.00 42.10 2.10
4441 5226 3.337301 ACCTAGGTCTGGGTTCTACTTCT 59.663 47.826 9.21 0.00 42.10 2.85
4442 5227 3.710724 ACCTAGGTCTGGGTTCTACTTC 58.289 50.000 9.21 0.00 42.10 3.01
4443 5228 3.848978 ACCTAGGTCTGGGTTCTACTT 57.151 47.619 9.21 0.00 42.10 2.24
4444 5229 3.204831 CCTACCTAGGTCTGGGTTCTACT 59.795 52.174 20.32 0.00 42.10 2.57
4455 5240 1.249407 CATCCGCTCCTACCTAGGTC 58.751 60.000 20.32 2.07 44.02 3.85
4469 5254 5.419760 TTCTCTACTGAATCGTACATCCG 57.580 43.478 0.00 0.00 0.00 4.18
4470 5255 7.539366 GCTATTTCTCTACTGAATCGTACATCC 59.461 40.741 0.00 0.00 0.00 3.51
4477 5265 5.150683 CGAGGCTATTTCTCTACTGAATCG 58.849 45.833 0.00 0.00 0.00 3.34
4479 5267 6.276847 CAACGAGGCTATTTCTCTACTGAAT 58.723 40.000 0.00 0.00 0.00 2.57
4480 5268 5.394224 CCAACGAGGCTATTTCTCTACTGAA 60.394 44.000 0.00 0.00 0.00 3.02
4481 5269 4.098044 CCAACGAGGCTATTTCTCTACTGA 59.902 45.833 0.00 0.00 0.00 3.41
4482 5270 4.098044 TCCAACGAGGCTATTTCTCTACTG 59.902 45.833 0.00 0.00 37.29 2.74
4494 5282 4.070552 GGTCGCTCCAACGAGGCT 62.071 66.667 0.00 0.00 43.89 4.58
4497 5285 1.801913 CTTCGGTCGCTCCAACGAG 60.802 63.158 0.00 0.00 43.89 4.18
4498 5286 2.196382 CTCTTCGGTCGCTCCAACGA 62.196 60.000 0.00 0.00 40.36 3.85
4499 5287 1.801913 CTCTTCGGTCGCTCCAACG 60.802 63.158 0.00 0.00 35.57 4.10
4500 5288 1.446272 CCTCTTCGGTCGCTCCAAC 60.446 63.158 0.00 0.00 35.57 3.77
4504 5292 2.168666 AAACCCCTCTTCGGTCGCTC 62.169 60.000 0.00 0.00 31.48 5.03
4506 5294 0.459759 CTAAACCCCTCTTCGGTCGC 60.460 60.000 0.00 0.00 31.48 5.19
4507 5295 1.134560 CTCTAAACCCCTCTTCGGTCG 59.865 57.143 0.00 0.00 31.48 4.79
4508 5296 2.166050 GACTCTAAACCCCTCTTCGGTC 59.834 54.545 0.00 0.00 31.48 4.79
4509 5297 2.177734 GACTCTAAACCCCTCTTCGGT 58.822 52.381 0.00 0.00 34.07 4.69
4510 5298 2.427812 GAGACTCTAAACCCCTCTTCGG 59.572 54.545 0.00 0.00 0.00 4.30
4511 5299 2.097791 CGAGACTCTAAACCCCTCTTCG 59.902 54.545 0.03 0.00 0.00 3.79
4512 5300 3.354467 TCGAGACTCTAAACCCCTCTTC 58.646 50.000 0.03 0.00 0.00 2.87
4513 5301 3.453059 TCGAGACTCTAAACCCCTCTT 57.547 47.619 0.03 0.00 0.00 2.85
4514 5302 3.673543 ATCGAGACTCTAAACCCCTCT 57.326 47.619 0.03 0.00 0.00 3.69
4515 5303 4.888823 ACTAATCGAGACTCTAAACCCCTC 59.111 45.833 0.03 0.00 0.00 4.30
4522 5346 4.851843 TCCCACACTAATCGAGACTCTAA 58.148 43.478 0.03 0.00 0.00 2.10
4523 5347 4.498894 TCCCACACTAATCGAGACTCTA 57.501 45.455 0.03 0.00 0.00 2.43
4600 5426 4.692228 ACAATCGCAACCAGAAAACAATT 58.308 34.783 0.00 0.00 0.00 2.32
4644 5585 4.807304 GCACATTTCAGAGGCCAAATTATG 59.193 41.667 5.01 3.84 0.00 1.90
4648 5589 2.232941 CTGCACATTTCAGAGGCCAAAT 59.767 45.455 5.01 0.00 33.54 2.32
4696 5637 1.134699 CGGCAAGGCAATAGTCTCTCA 60.135 52.381 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.