Multiple sequence alignment - TraesCS2D01G446600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G446600 chr2D 100.000 8179 0 0 1 8179 556924382 556932560 0.000000e+00 15104
1 TraesCS2D01G446600 chr2D 85.983 585 55 14 182 744 556713947 556714526 1.170000e-167 601
2 TraesCS2D01G446600 chr2D 95.092 163 7 1 2551 2712 134301650 134301488 1.050000e-63 255
3 TraesCS2D01G446600 chr2D 95.092 163 7 1 2552 2713 624365934 624365772 1.050000e-63 255
4 TraesCS2D01G446600 chr2D 89.916 119 4 5 847 960 556714571 556714686 6.610000e-31 147
5 TraesCS2D01G446600 chr2D 93.750 96 4 2 2037 2132 302248004 302248097 8.560000e-30 143
6 TraesCS2D01G446600 chr7B 91.256 4609 244 65 2958 7495 692837789 692833269 0.000000e+00 6131
7 TraesCS2D01G446600 chr7B 90.610 426 19 5 926 1339 692838975 692838559 5.580000e-151 545
8 TraesCS2D01G446600 chr7B 88.736 435 28 7 2131 2551 692838501 692838074 5.660000e-141 512
9 TraesCS2D01G446600 chr7B 95.041 242 12 0 2715 2956 692838069 692837828 1.670000e-101 381
10 TraesCS2D01G446600 chr7B 94.545 165 8 1 2549 2712 490208154 490207990 3.790000e-63 254
11 TraesCS2D01G446600 chr7D 92.662 4320 206 51 2958 7227 606962819 606967077 0.000000e+00 6119
12 TraesCS2D01G446600 chr7D 90.300 433 25 9 2131 2553 606962111 606962536 1.200000e-152 551
13 TraesCS2D01G446600 chr7D 88.915 424 20 8 926 1337 606961317 606961725 1.590000e-136 497
14 TraesCS2D01G446600 chr7D 93.309 269 16 2 2711 2978 606962535 606962802 5.950000e-106 396
15 TraesCS2D01G446600 chr7D 83.712 264 29 7 1786 2049 606961863 606962112 3.820000e-58 237
16 TraesCS2D01G446600 chr7D 95.699 93 3 1 2041 2132 474349054 474349146 1.840000e-31 148
17 TraesCS2D01G446600 chr2B 94.860 2568 103 17 2959 5514 664128814 664131364 0.000000e+00 3984
18 TraesCS2D01G446600 chr2B 92.134 1907 106 15 6309 8179 664132060 664133958 0.000000e+00 2651
19 TraesCS2D01G446600 chr2B 94.179 1151 47 9 918 2049 664126958 664128107 0.000000e+00 1736
20 TraesCS2D01G446600 chr2B 87.179 663 64 16 5523 6174 664131404 664132056 0.000000e+00 734
21 TraesCS2D01G446600 chr2B 94.919 433 12 3 2131 2557 664128106 664128534 0.000000e+00 669
22 TraesCS2D01G446600 chr2B 97.984 248 4 1 2711 2957 664128528 664128775 5.870000e-116 429
23 TraesCS2D01G446600 chr2B 93.878 98 5 1 2038 2135 790113035 790112939 6.610000e-31 147
24 TraesCS2D01G446600 chr2A 94.861 1654 69 12 3123 4768 696850873 696852518 0.000000e+00 2569
25 TraesCS2D01G446600 chr2A 93.395 1075 53 7 6309 7378 696854021 696855082 0.000000e+00 1576
26 TraesCS2D01G446600 chr2A 94.622 781 35 3 4741 5514 696852537 696853317 0.000000e+00 1203
27 TraesCS2D01G446600 chr2A 88.471 850 50 14 7377 8179 696855115 696855963 0.000000e+00 983
28 TraesCS2D01G446600 chr2A 89.039 812 33 16 762 1551 696848616 696849393 0.000000e+00 955
29 TraesCS2D01G446600 chr2A 87.021 678 70 13 5523 6189 696853354 696854024 0.000000e+00 749
30 TraesCS2D01G446600 chr2A 94.273 454 22 2 1596 2049 696849392 696849841 0.000000e+00 691
31 TraesCS2D01G446600 chr2A 94.432 431 18 1 2133 2557 696849841 696850271 0.000000e+00 658
32 TraesCS2D01G446600 chr2A 97.166 247 7 0 2711 2957 696850266 696850512 1.270000e-112 418
33 TraesCS2D01G446600 chr2A 92.982 171 9 3 2958 3127 696850550 696850718 6.340000e-61 246
34 TraesCS2D01G446600 chr2A 94.681 94 4 1 2040 2133 617178799 617178891 2.380000e-30 145
35 TraesCS2D01G446600 chr4D 90.300 433 25 9 2131 2553 504510931 504511356 1.200000e-152 551
36 TraesCS2D01G446600 chr4D 95.062 162 7 1 2552 2712 34661688 34661527 3.790000e-63 254
37 TraesCS2D01G446600 chr4D 92.941 170 10 2 2548 2715 479687256 479687425 6.340000e-61 246
38 TraesCS2D01G446600 chr4D 82.251 231 27 7 1819 2049 504510716 504510932 3.900000e-43 187
39 TraesCS2D01G446600 chr4D 96.703 91 3 0 2048 2138 252173788 252173698 1.420000e-32 152
40 TraesCS2D01G446600 chr4D 95.652 92 4 0 2048 2139 245478338 245478429 1.840000e-31 148
41 TraesCS2D01G446600 chr4D 95.652 92 4 0 2048 2139 282080032 282079941 1.840000e-31 148
42 TraesCS2D01G446600 chr4D 93.407 91 6 0 2043 2133 303079253 303079343 1.430000e-27 135
43 TraesCS2D01G446600 chr4A 94.083 169 8 2 2546 2712 137967147 137966979 1.050000e-63 255
44 TraesCS2D01G446600 chr4A 94.083 169 8 2 2546 2712 137972662 137972830 1.050000e-63 255
45 TraesCS2D01G446600 chr4A 91.818 110 6 3 2045 2152 511040574 511040466 5.110000e-32 150
46 TraesCS2D01G446600 chr4A 96.629 89 3 0 2044 2132 743443041 743442953 1.840000e-31 148
47 TraesCS2D01G446600 chr6B 94.012 167 8 2 2547 2712 226361683 226361518 1.360000e-62 252
48 TraesCS2D01G446600 chr5B 92.090 177 10 4 2542 2715 539314454 539314279 6.340000e-61 246
49 TraesCS2D01G446600 chr7A 96.667 90 3 0 2048 2137 692919273 692919184 5.110000e-32 150
50 TraesCS2D01G446600 chr1B 94.000 100 4 2 2046 2143 406341848 406341749 5.110000e-32 150
51 TraesCS2D01G446600 chr4B 93.939 99 5 1 2037 2135 447451700 447451797 1.840000e-31 148
52 TraesCS2D01G446600 chr6D 90.566 106 6 4 2029 2132 199210431 199210328 3.980000e-28 137
53 TraesCS2D01G446600 chr3D 85.714 126 12 6 2047 2170 425066704 425066825 2.400000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G446600 chr2D 556924382 556932560 8178 False 15104.00 15104 100.00000 1 8179 1 chr2D.!!$F2 8178
1 TraesCS2D01G446600 chr2D 556713947 556714686 739 False 374.00 601 87.94950 182 960 2 chr2D.!!$F3 778
2 TraesCS2D01G446600 chr7B 692833269 692838975 5706 True 1892.25 6131 91.41075 926 7495 4 chr7B.!!$R2 6569
3 TraesCS2D01G446600 chr7D 606961317 606967077 5760 False 1560.00 6119 89.77960 926 7227 5 chr7D.!!$F2 6301
4 TraesCS2D01G446600 chr2B 664126958 664133958 7000 False 1700.50 3984 93.54250 918 8179 6 chr2B.!!$F1 7261
5 TraesCS2D01G446600 chr2A 696848616 696855963 7347 False 1004.80 2569 92.62620 762 8179 10 chr2A.!!$F2 7417
6 TraesCS2D01G446600 chr4D 504510716 504511356 640 False 369.00 551 86.27550 1819 2553 2 chr4D.!!$F4 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.036105 GCTCCAAAGCCCCCAAAATG 60.036 55.000 0.00 0.0 43.10 2.32 F
127 128 0.247460 GCCCCCAAAATGACTTCTGC 59.753 55.000 0.00 0.0 0.00 4.26 F
182 183 0.251916 TCTATTCCCCAACCTGTGCG 59.748 55.000 0.00 0.0 0.00 5.34 F
196 197 0.395862 TGTGCGGGGGAAACAAGAAA 60.396 50.000 0.00 0.0 0.00 2.52 F
775 797 0.460284 CGCTTACGTGAGCCCAGAAT 60.460 55.000 24.66 0.0 39.51 2.40 F
2025 2105 1.134699 CATAGTGGTGACGGCAGTGAT 60.135 52.381 0.00 0.0 0.00 3.06 F
2613 2710 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.0 0.00 3.91 F
3380 3674 0.668535 AGCGGCAAAGTTGAAGGAAC 59.331 50.000 1.45 0.0 34.40 3.62 F
4992 5351 2.146342 ACTTGCCTCATTGAACTGTCG 58.854 47.619 0.00 0.0 0.00 4.35 F
5680 6079 0.390492 TGCGATTCATCAGCCTCGAT 59.610 50.000 0.00 0.0 33.07 3.59 F
6311 6745 0.460987 ACTTCTGCGAGTGCCTATGC 60.461 55.000 0.00 0.0 41.78 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1433 1.059913 AGGAGGCAGCACAGTTAAGT 58.940 50.000 0.00 0.0 0.00 2.24 R
1664 1743 1.064621 CCTGATTTTCCATGGCGCG 59.935 57.895 6.96 0.0 0.00 6.86 R
1710 1790 2.979814 TGTGTGAATATCTCGGGTGG 57.020 50.000 0.00 0.0 0.00 4.61 R
1983 2063 4.039488 TGAAACAGGAATTGATGCAAAGCT 59.961 37.500 0.00 0.0 0.00 3.74 R
2594 2691 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.00 0.0 0.00 5.54 R
3880 4179 0.321564 CACGGACCTGCAAATGGAGA 60.322 55.000 3.25 0.0 35.31 3.71 R
4389 4698 2.859165 TGCAAAACCCAACCAAAACA 57.141 40.000 0.00 0.0 0.00 2.83 R
5296 5655 0.825840 CCACGACCCAACACCCAAAT 60.826 55.000 0.00 0.0 0.00 2.32 R
6292 6726 0.460987 GCATAGGCACTCGCAGAAGT 60.461 55.000 0.00 0.0 41.75 3.01 R
7040 7490 0.174617 GTGTCTCTAGTGCAGGCTCC 59.825 60.000 0.00 0.0 0.00 4.70 R
8097 8656 0.099436 GCCACACAAATCGCATCTCC 59.901 55.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.763837 TCCGATATAGGGATAAGAAAACTATGA 57.236 33.333 1.64 0.00 0.00 2.15
52 53 9.860393 ATATAGGGATAAGAAAACTATGAGGGT 57.140 33.333 0.00 0.00 0.00 4.34
53 54 6.253946 AGGGATAAGAAAACTATGAGGGTG 57.746 41.667 0.00 0.00 0.00 4.61
54 55 4.822350 GGGATAAGAAAACTATGAGGGTGC 59.178 45.833 0.00 0.00 0.00 5.01
55 56 5.437060 GGATAAGAAAACTATGAGGGTGCA 58.563 41.667 0.00 0.00 0.00 4.57
56 57 5.297029 GGATAAGAAAACTATGAGGGTGCAC 59.703 44.000 8.80 8.80 0.00 4.57
57 58 3.073274 AGAAAACTATGAGGGTGCACC 57.927 47.619 28.57 28.57 40.67 5.01
58 59 2.375174 AGAAAACTATGAGGGTGCACCA 59.625 45.455 35.78 17.69 43.89 4.17
59 60 2.200373 AAACTATGAGGGTGCACCAC 57.800 50.000 35.78 27.38 43.89 4.16
60 61 1.362224 AACTATGAGGGTGCACCACT 58.638 50.000 35.78 28.49 43.89 4.00
61 62 0.615331 ACTATGAGGGTGCACCACTG 59.385 55.000 35.78 20.38 43.89 3.66
62 63 0.745845 CTATGAGGGTGCACCACTGC 60.746 60.000 35.78 21.20 43.89 4.40
70 71 3.886694 GCACCACTGCGCAACACA 61.887 61.111 13.05 0.00 32.44 3.72
71 72 3.033184 CACCACTGCGCAACACAT 58.967 55.556 13.05 0.00 0.00 3.21
72 73 1.370778 CACCACTGCGCAACACATG 60.371 57.895 13.05 0.00 0.00 3.21
73 74 1.525765 ACCACTGCGCAACACATGA 60.526 52.632 13.05 0.00 0.00 3.07
74 75 1.081906 CCACTGCGCAACACATGAC 60.082 57.895 13.05 0.00 0.00 3.06
75 76 1.439201 CACTGCGCAACACATGACG 60.439 57.895 13.05 0.00 0.00 4.35
76 77 2.174107 CTGCGCAACACATGACGG 59.826 61.111 13.05 0.00 0.00 4.79
77 78 2.280457 TGCGCAACACATGACGGA 60.280 55.556 8.16 0.00 0.00 4.69
78 79 2.231745 CTGCGCAACACATGACGGAG 62.232 60.000 13.05 1.95 39.23 4.63
100 101 4.541482 GGCGCGGCACATGACATG 62.541 66.667 29.32 14.02 0.00 3.21
102 103 3.502455 CGCGGCACATGACATGCT 61.502 61.111 15.49 0.24 42.93 3.79
103 104 2.406401 GCGGCACATGACATGCTC 59.594 61.111 15.49 7.11 42.93 4.26
104 105 3.104766 CGGCACATGACATGCTCC 58.895 61.111 15.49 14.45 42.93 4.70
105 106 1.746239 CGGCACATGACATGCTCCA 60.746 57.895 15.49 0.00 42.93 3.86
106 107 1.307355 CGGCACATGACATGCTCCAA 61.307 55.000 15.49 0.00 42.93 3.53
107 108 0.889994 GGCACATGACATGCTCCAAA 59.110 50.000 15.49 0.00 42.93 3.28
108 109 1.135199 GGCACATGACATGCTCCAAAG 60.135 52.381 15.49 0.00 42.93 2.77
117 118 3.884318 GCTCCAAAGCCCCCAAAA 58.116 55.556 0.00 0.00 43.10 2.44
118 119 2.376063 GCTCCAAAGCCCCCAAAAT 58.624 52.632 0.00 0.00 43.10 1.82
119 120 0.036105 GCTCCAAAGCCCCCAAAATG 60.036 55.000 0.00 0.00 43.10 2.32
120 121 1.643310 CTCCAAAGCCCCCAAAATGA 58.357 50.000 0.00 0.00 0.00 2.57
121 122 1.276138 CTCCAAAGCCCCCAAAATGAC 59.724 52.381 0.00 0.00 0.00 3.06
122 123 1.132881 TCCAAAGCCCCCAAAATGACT 60.133 47.619 0.00 0.00 0.00 3.41
123 124 1.699083 CCAAAGCCCCCAAAATGACTT 59.301 47.619 0.00 0.00 0.00 3.01
124 125 2.289631 CCAAAGCCCCCAAAATGACTTC 60.290 50.000 0.00 0.00 0.00 3.01
125 126 2.634453 CAAAGCCCCCAAAATGACTTCT 59.366 45.455 0.00 0.00 0.00 2.85
126 127 1.928868 AGCCCCCAAAATGACTTCTG 58.071 50.000 0.00 0.00 0.00 3.02
127 128 0.247460 GCCCCCAAAATGACTTCTGC 59.753 55.000 0.00 0.00 0.00 4.26
128 129 0.527565 CCCCCAAAATGACTTCTGCG 59.472 55.000 0.00 0.00 0.00 5.18
129 130 0.527565 CCCCAAAATGACTTCTGCGG 59.472 55.000 0.00 0.00 0.00 5.69
130 131 1.247567 CCCAAAATGACTTCTGCGGT 58.752 50.000 0.00 0.00 0.00 5.68
131 132 2.432444 CCCAAAATGACTTCTGCGGTA 58.568 47.619 0.00 0.00 0.00 4.02
132 133 2.420022 CCCAAAATGACTTCTGCGGTAG 59.580 50.000 0.00 0.00 0.00 3.18
133 134 2.420022 CCAAAATGACTTCTGCGGTAGG 59.580 50.000 4.04 0.00 0.00 3.18
134 135 2.403252 AAATGACTTCTGCGGTAGGG 57.597 50.000 4.04 0.00 0.00 3.53
135 136 1.568504 AATGACTTCTGCGGTAGGGA 58.431 50.000 4.04 0.00 0.00 4.20
136 137 1.568504 ATGACTTCTGCGGTAGGGAA 58.431 50.000 4.04 0.00 0.00 3.97
137 138 0.606604 TGACTTCTGCGGTAGGGAAC 59.393 55.000 4.04 0.00 0.00 3.62
149 150 2.686106 GGGAACCCGTGCTCCCTA 60.686 66.667 0.00 0.00 46.91 3.53
150 151 2.582978 GGAACCCGTGCTCCCTAC 59.417 66.667 0.00 0.00 0.00 3.18
151 152 2.288025 GGAACCCGTGCTCCCTACA 61.288 63.158 0.00 0.00 0.00 2.74
152 153 1.079336 GAACCCGTGCTCCCTACAC 60.079 63.158 0.00 0.00 34.62 2.90
153 154 1.823169 GAACCCGTGCTCCCTACACA 61.823 60.000 0.00 0.00 37.93 3.72
154 155 2.108278 AACCCGTGCTCCCTACACAC 62.108 60.000 0.00 0.00 37.93 3.82
155 156 2.579657 CCCGTGCTCCCTACACACA 61.580 63.158 0.00 0.00 37.93 3.72
156 157 1.596934 CCGTGCTCCCTACACACAT 59.403 57.895 0.00 0.00 37.93 3.21
157 158 0.821517 CCGTGCTCCCTACACACATA 59.178 55.000 0.00 0.00 37.93 2.29
158 159 1.202417 CCGTGCTCCCTACACACATAG 60.202 57.143 0.00 0.00 37.93 2.23
159 160 1.476891 CGTGCTCCCTACACACATAGT 59.523 52.381 0.00 0.00 37.93 2.12
172 173 4.130118 CACACATAGTGCTTCTATTCCCC 58.870 47.826 0.00 0.00 42.15 4.81
173 174 3.780294 ACACATAGTGCTTCTATTCCCCA 59.220 43.478 0.00 0.00 37.26 4.96
174 175 4.227300 ACACATAGTGCTTCTATTCCCCAA 59.773 41.667 0.00 0.00 37.26 4.12
175 176 4.576463 CACATAGTGCTTCTATTCCCCAAC 59.424 45.833 0.53 0.00 37.26 3.77
176 177 2.808906 AGTGCTTCTATTCCCCAACC 57.191 50.000 0.00 0.00 0.00 3.77
177 178 2.279173 AGTGCTTCTATTCCCCAACCT 58.721 47.619 0.00 0.00 0.00 3.50
178 179 2.025887 AGTGCTTCTATTCCCCAACCTG 60.026 50.000 0.00 0.00 0.00 4.00
179 180 1.992557 TGCTTCTATTCCCCAACCTGT 59.007 47.619 0.00 0.00 0.00 4.00
180 181 2.290896 TGCTTCTATTCCCCAACCTGTG 60.291 50.000 0.00 0.00 0.00 3.66
181 182 2.369394 CTTCTATTCCCCAACCTGTGC 58.631 52.381 0.00 0.00 0.00 4.57
182 183 0.251916 TCTATTCCCCAACCTGTGCG 59.748 55.000 0.00 0.00 0.00 5.34
183 184 0.748005 CTATTCCCCAACCTGTGCGG 60.748 60.000 0.00 0.00 39.35 5.69
184 185 2.204865 TATTCCCCAACCTGTGCGGG 62.205 60.000 0.00 0.00 38.47 6.13
188 189 4.278513 CCAACCTGTGCGGGGGAA 62.279 66.667 1.77 0.00 36.97 3.97
189 190 2.203422 CAACCTGTGCGGGGGAAA 60.203 61.111 1.77 0.00 36.97 3.13
190 191 2.203437 AACCTGTGCGGGGGAAAC 60.203 61.111 1.77 0.00 36.97 2.78
191 192 3.063197 AACCTGTGCGGGGGAAACA 62.063 57.895 1.77 0.00 36.97 2.83
192 193 2.203422 CCTGTGCGGGGGAAACAA 60.203 61.111 0.00 0.00 0.00 2.83
193 194 2.268076 CCTGTGCGGGGGAAACAAG 61.268 63.158 0.00 0.00 0.00 3.16
194 195 1.228124 CTGTGCGGGGGAAACAAGA 60.228 57.895 0.00 0.00 0.00 3.02
195 196 0.821711 CTGTGCGGGGGAAACAAGAA 60.822 55.000 0.00 0.00 0.00 2.52
196 197 0.395862 TGTGCGGGGGAAACAAGAAA 60.396 50.000 0.00 0.00 0.00 2.52
197 198 0.747852 GTGCGGGGGAAACAAGAAAA 59.252 50.000 0.00 0.00 0.00 2.29
198 199 1.036707 TGCGGGGGAAACAAGAAAAG 58.963 50.000 0.00 0.00 0.00 2.27
202 203 1.037493 GGGGAAACAAGAAAAGGCGT 58.963 50.000 0.00 0.00 0.00 5.68
687 709 5.903764 TGCGAATTCCAAAAATGTTCAAG 57.096 34.783 0.00 0.00 0.00 3.02
691 713 6.527957 CGAATTCCAAAAATGTTCAAGCATC 58.472 36.000 0.00 0.00 0.00 3.91
692 714 6.366877 CGAATTCCAAAAATGTTCAAGCATCT 59.633 34.615 0.00 0.00 0.00 2.90
705 727 7.988737 TGTTCAAGCATCTAAACAATATCCTG 58.011 34.615 0.00 0.00 0.00 3.86
707 729 6.899089 TCAAGCATCTAAACAATATCCTGGA 58.101 36.000 0.00 0.00 0.00 3.86
722 744 4.439305 TCCTGGAATTTCAGAAAATGCG 57.561 40.909 15.83 0.00 35.27 4.73
740 762 2.600731 GGGAATTGGATCGGCCCA 59.399 61.111 0.00 0.00 38.68 5.36
744 766 0.679640 GAATTGGATCGGCCCACACA 60.680 55.000 0.00 0.00 35.62 3.72
745 767 0.965363 AATTGGATCGGCCCACACAC 60.965 55.000 0.00 0.00 35.62 3.82
746 768 2.135903 ATTGGATCGGCCCACACACA 62.136 55.000 0.00 0.00 35.62 3.72
747 769 2.746277 GGATCGGCCCACACACAC 60.746 66.667 0.00 0.00 0.00 3.82
748 770 2.031919 GATCGGCCCACACACACA 59.968 61.111 0.00 0.00 0.00 3.72
749 771 2.281484 ATCGGCCCACACACACAC 60.281 61.111 0.00 0.00 0.00 3.82
750 772 3.113514 ATCGGCCCACACACACACA 62.114 57.895 0.00 0.00 0.00 3.72
751 773 3.582120 CGGCCCACACACACACAC 61.582 66.667 0.00 0.00 0.00 3.82
752 774 2.439338 GGCCCACACACACACACA 60.439 61.111 0.00 0.00 0.00 3.72
753 775 2.770589 GGCCCACACACACACACAC 61.771 63.158 0.00 0.00 0.00 3.82
754 776 2.770589 GCCCACACACACACACACC 61.771 63.158 0.00 0.00 0.00 4.16
755 777 2.118404 CCCACACACACACACACCC 61.118 63.158 0.00 0.00 0.00 4.61
756 778 2.118404 CCACACACACACACACCCC 61.118 63.158 0.00 0.00 0.00 4.95
757 779 2.124901 ACACACACACACACCCCG 60.125 61.111 0.00 0.00 0.00 5.73
758 780 3.582120 CACACACACACACCCCGC 61.582 66.667 0.00 0.00 0.00 6.13
759 781 3.792736 ACACACACACACCCCGCT 61.793 61.111 0.00 0.00 0.00 5.52
760 782 2.515991 CACACACACACCCCGCTT 60.516 61.111 0.00 0.00 0.00 4.68
761 783 1.227704 CACACACACACCCCGCTTA 60.228 57.895 0.00 0.00 0.00 3.09
762 784 1.227734 ACACACACACCCCGCTTAC 60.228 57.895 0.00 0.00 0.00 2.34
763 785 2.029964 ACACACACCCCGCTTACG 59.970 61.111 0.00 0.00 39.67 3.18
764 786 2.029964 CACACACCCCGCTTACGT 59.970 61.111 0.00 0.00 37.70 3.57
765 787 2.029964 ACACACCCCGCTTACGTG 59.970 61.111 0.00 0.00 37.70 4.49
766 788 2.340809 CACACCCCGCTTACGTGA 59.659 61.111 0.00 0.00 37.70 4.35
767 789 1.736645 CACACCCCGCTTACGTGAG 60.737 63.158 2.38 2.38 37.70 3.51
768 790 2.813908 CACCCCGCTTACGTGAGC 60.814 66.667 21.47 21.47 39.29 4.26
769 791 4.078516 ACCCCGCTTACGTGAGCC 62.079 66.667 24.66 8.90 39.51 4.70
770 792 4.832608 CCCCGCTTACGTGAGCCC 62.833 72.222 24.66 0.93 39.51 5.19
771 793 4.077184 CCCGCTTACGTGAGCCCA 62.077 66.667 24.66 0.00 39.51 5.36
772 794 2.509336 CCGCTTACGTGAGCCCAG 60.509 66.667 24.66 12.02 39.51 4.45
773 795 2.571757 CGCTTACGTGAGCCCAGA 59.428 61.111 24.66 0.00 39.51 3.86
774 796 1.080093 CGCTTACGTGAGCCCAGAA 60.080 57.895 24.66 0.00 39.51 3.02
775 797 0.460284 CGCTTACGTGAGCCCAGAAT 60.460 55.000 24.66 0.00 39.51 2.40
778 800 3.467803 GCTTACGTGAGCCCAGAATATT 58.532 45.455 20.85 0.00 36.66 1.28
806 829 9.959775 TTTGCTAAAAACAAAATTAAACGTGAG 57.040 25.926 0.00 0.00 34.22 3.51
807 830 7.614026 TGCTAAAAACAAAATTAAACGTGAGC 58.386 30.769 0.00 0.00 0.00 4.26
808 831 6.779105 GCTAAAAACAAAATTAAACGTGAGCG 59.221 34.615 0.00 0.00 44.93 5.03
894 920 3.453679 GACGCCGGCTTCTCTCCT 61.454 66.667 26.68 0.00 0.00 3.69
895 921 3.418744 GACGCCGGCTTCTCTCCTC 62.419 68.421 26.68 0.00 0.00 3.71
897 923 3.855853 GCCGGCTTCTCTCCTCCC 61.856 72.222 22.15 0.00 0.00 4.30
1367 1433 2.636647 TCTTCATGTGTTCTGTGGCA 57.363 45.000 0.00 0.00 0.00 4.92
1490 1569 5.733620 TCCGTGAAACTAATAAGACAGGT 57.266 39.130 0.00 0.00 31.75 4.00
1491 1570 6.839124 TCCGTGAAACTAATAAGACAGGTA 57.161 37.500 0.00 0.00 31.75 3.08
1499 1578 3.828875 AATAAGACAGGTAGCTCAGGC 57.171 47.619 0.00 0.00 39.06 4.85
1610 1689 7.522725 GCATATGAATTCAAATAGGGTGGTGAG 60.523 40.741 13.09 0.00 0.00 3.51
1653 1732 4.629251 TCTCAGACATCTCACGAATCAG 57.371 45.455 0.00 0.00 0.00 2.90
1664 1743 6.621316 TCTCACGAATCAGGAGATACTAAC 57.379 41.667 0.00 0.00 33.01 2.34
1710 1790 1.834263 AGTGGACCAACCTATGCTCTC 59.166 52.381 0.00 0.00 39.86 3.20
1831 1911 3.499918 CCTAGCTTGTGTTCTTGGAAGTG 59.500 47.826 0.00 0.00 0.00 3.16
1896 1976 3.184382 TCACCTCCTGATACCTGACAA 57.816 47.619 0.00 0.00 0.00 3.18
1983 2063 6.267817 GCTTTTGCTACATCTTGCATGAATA 58.732 36.000 6.36 2.16 43.35 1.75
1987 2067 5.128205 TGCTACATCTTGCATGAATAGCTT 58.872 37.500 29.48 7.65 36.50 3.74
2017 2097 3.313012 TCCTGTTTCATAGTGGTGACG 57.687 47.619 0.00 0.00 0.00 4.35
2025 2105 1.134699 CATAGTGGTGACGGCAGTGAT 60.135 52.381 0.00 0.00 0.00 3.06
2053 2133 9.620259 GAATGGAGGATTTTCATATATACTCCC 57.380 37.037 10.74 0.00 41.90 4.30
2054 2134 8.940012 ATGGAGGATTTTCATATATACTCCCT 57.060 34.615 10.74 0.64 41.90 4.20
2055 2135 8.380742 TGGAGGATTTTCATATATACTCCCTC 57.619 38.462 10.74 0.00 41.90 4.30
2056 2136 7.797062 GGAGGATTTTCATATATACTCCCTCC 58.203 42.308 15.38 15.38 46.15 4.30
2057 2137 7.418025 GGAGGATTTTCATATATACTCCCTCCG 60.418 44.444 15.38 0.00 44.33 4.63
2058 2138 6.960542 AGGATTTTCATATATACTCCCTCCGT 59.039 38.462 0.00 0.00 0.00 4.69
2059 2139 8.120538 AGGATTTTCATATATACTCCCTCCGTA 58.879 37.037 0.00 0.00 0.00 4.02
2060 2140 8.755977 GGATTTTCATATATACTCCCTCCGTAA 58.244 37.037 0.00 0.00 0.00 3.18
2063 2143 8.945195 TTTCATATATACTCCCTCCGTAAAGA 57.055 34.615 0.00 0.00 0.00 2.52
2064 2144 8.945195 TTCATATATACTCCCTCCGTAAAGAA 57.055 34.615 0.00 0.00 0.00 2.52
2065 2145 8.945195 TCATATATACTCCCTCCGTAAAGAAA 57.055 34.615 0.00 0.00 0.00 2.52
2066 2146 9.543231 TCATATATACTCCCTCCGTAAAGAAAT 57.457 33.333 0.00 0.00 0.00 2.17
2072 2152 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2073 2153 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2074 2154 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2075 2155 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2076 2156 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2077 2157 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2078 2158 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2079 2159 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2080 2160 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2081 2161 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2093 2173 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2094 2174 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2095 2175 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
2096 2176 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
2097 2177 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
2098 2178 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
2099 2179 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
2105 2185 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
2106 2186 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
2107 2187 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
2108 2188 8.954350 TCACTAAAGTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 37.23 4.09
2109 2189 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
2123 2203 9.745880 TCTAAACGCTCTTATATTCCTTTACAG 57.254 33.333 0.00 0.00 0.00 2.74
2124 2204 9.745880 CTAAACGCTCTTATATTCCTTTACAGA 57.254 33.333 0.00 0.00 0.00 3.41
2125 2205 8.649973 AAACGCTCTTATATTCCTTTACAGAG 57.350 34.615 0.00 0.00 0.00 3.35
2126 2206 6.750148 ACGCTCTTATATTCCTTTACAGAGG 58.250 40.000 0.00 0.00 38.20 3.69
2127 2207 6.159988 CGCTCTTATATTCCTTTACAGAGGG 58.840 44.000 0.00 0.00 37.41 4.30
2128 2208 6.015350 CGCTCTTATATTCCTTTACAGAGGGA 60.015 42.308 4.76 0.00 40.49 4.20
2129 2209 7.382898 GCTCTTATATTCCTTTACAGAGGGAG 58.617 42.308 0.00 0.00 37.41 4.30
2130 2210 7.015779 GCTCTTATATTCCTTTACAGAGGGAGT 59.984 40.741 0.00 0.00 37.41 3.85
2131 2211 9.589461 CTCTTATATTCCTTTACAGAGGGAGTA 57.411 37.037 0.00 0.00 37.41 2.59
2456 2540 5.245531 TGGTGAGTGTGATTTTGGAGATAC 58.754 41.667 0.00 0.00 0.00 2.24
2553 2650 8.040716 AGCTGTTGTTGGTTTTAGTGATATAC 57.959 34.615 0.00 0.00 0.00 1.47
2554 2651 7.883311 AGCTGTTGTTGGTTTTAGTGATATACT 59.117 33.333 0.00 0.00 43.56 2.12
2555 2652 8.175716 GCTGTTGTTGGTTTTAGTGATATACTC 58.824 37.037 0.00 0.00 40.89 2.59
2556 2653 8.556213 TGTTGTTGGTTTTAGTGATATACTCC 57.444 34.615 0.00 0.00 40.89 3.85
2557 2654 7.608761 TGTTGTTGGTTTTAGTGATATACTCCC 59.391 37.037 0.00 0.00 40.89 4.30
2558 2655 7.504926 TGTTGGTTTTAGTGATATACTCCCT 57.495 36.000 0.00 0.00 40.89 4.20
2559 2656 7.562135 TGTTGGTTTTAGTGATATACTCCCTC 58.438 38.462 0.00 0.00 40.89 4.30
2560 2657 6.742559 TGGTTTTAGTGATATACTCCCTCC 57.257 41.667 0.00 0.00 40.89 4.30
2561 2658 5.303589 TGGTTTTAGTGATATACTCCCTCCG 59.696 44.000 0.00 0.00 40.89 4.63
2562 2659 5.303845 GGTTTTAGTGATATACTCCCTCCGT 59.696 44.000 0.00 0.00 40.89 4.69
2563 2660 6.183360 GGTTTTAGTGATATACTCCCTCCGTT 60.183 42.308 0.00 0.00 40.89 4.44
2564 2661 6.645790 TTTAGTGATATACTCCCTCCGTTC 57.354 41.667 0.00 0.00 40.89 3.95
2565 2662 4.456662 AGTGATATACTCCCTCCGTTCT 57.543 45.455 0.00 0.00 33.17 3.01
2566 2663 5.579753 AGTGATATACTCCCTCCGTTCTA 57.420 43.478 0.00 0.00 33.17 2.10
2567 2664 5.950023 AGTGATATACTCCCTCCGTTCTAA 58.050 41.667 0.00 0.00 33.17 2.10
2568 2665 6.371278 AGTGATATACTCCCTCCGTTCTAAA 58.629 40.000 0.00 0.00 33.17 1.85
2569 2666 7.011382 AGTGATATACTCCCTCCGTTCTAAAT 58.989 38.462 0.00 0.00 33.17 1.40
2570 2667 8.168725 AGTGATATACTCCCTCCGTTCTAAATA 58.831 37.037 0.00 0.00 33.17 1.40
2571 2668 8.968969 GTGATATACTCCCTCCGTTCTAAATAT 58.031 37.037 0.00 0.00 0.00 1.28
2575 2672 8.953223 ATACTCCCTCCGTTCTAAATATAAGT 57.047 34.615 0.00 0.00 0.00 2.24
2576 2673 7.287512 ACTCCCTCCGTTCTAAATATAAGTC 57.712 40.000 0.00 0.00 0.00 3.01
2577 2674 6.267242 ACTCCCTCCGTTCTAAATATAAGTCC 59.733 42.308 0.00 0.00 0.00 3.85
2578 2675 6.379579 TCCCTCCGTTCTAAATATAAGTCCT 58.620 40.000 0.00 0.00 0.00 3.85
2579 2676 6.842807 TCCCTCCGTTCTAAATATAAGTCCTT 59.157 38.462 0.00 0.00 0.00 3.36
2580 2677 7.346436 TCCCTCCGTTCTAAATATAAGTCCTTT 59.654 37.037 0.00 0.00 0.00 3.11
2581 2678 7.991460 CCCTCCGTTCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2595 2692 6.765915 AAGTCCTTTTAGAGATTCCAATGC 57.234 37.500 0.00 0.00 0.00 3.56
2596 2693 4.878397 AGTCCTTTTAGAGATTCCAATGCG 59.122 41.667 0.00 0.00 0.00 4.73
2597 2694 4.035675 GTCCTTTTAGAGATTCCAATGCGG 59.964 45.833 0.00 0.00 0.00 5.69
2598 2695 4.080582 TCCTTTTAGAGATTCCAATGCGGA 60.081 41.667 0.00 0.00 44.40 5.54
2599 2696 4.035675 CCTTTTAGAGATTCCAATGCGGAC 59.964 45.833 0.00 0.00 46.36 4.79
2600 2697 4.487714 TTTAGAGATTCCAATGCGGACT 57.512 40.909 0.00 0.00 46.36 3.85
2601 2698 5.607939 TTTAGAGATTCCAATGCGGACTA 57.392 39.130 0.00 0.00 46.36 2.59
2602 2699 3.460857 AGAGATTCCAATGCGGACTAC 57.539 47.619 0.00 0.00 46.36 2.73
2603 2700 2.766263 AGAGATTCCAATGCGGACTACA 59.234 45.455 0.00 0.00 46.36 2.74
2604 2701 3.389329 AGAGATTCCAATGCGGACTACAT 59.611 43.478 0.00 0.00 46.36 2.29
2605 2702 4.588951 AGAGATTCCAATGCGGACTACATA 59.411 41.667 0.00 0.00 46.36 2.29
2606 2703 4.632153 AGATTCCAATGCGGACTACATAC 58.368 43.478 0.00 0.00 46.36 2.39
2607 2704 2.502213 TCCAATGCGGACTACATACG 57.498 50.000 0.00 0.00 39.64 3.06
2608 2705 1.067974 TCCAATGCGGACTACATACGG 59.932 52.381 0.00 0.00 39.64 4.02
2609 2706 1.067974 CCAATGCGGACTACATACGGA 59.932 52.381 0.00 0.00 36.56 4.69
2610 2707 2.394708 CAATGCGGACTACATACGGAG 58.605 52.381 0.00 0.00 0.00 4.63
2611 2708 0.314302 ATGCGGACTACATACGGAGC 59.686 55.000 0.00 0.00 0.00 4.70
2612 2709 1.033202 TGCGGACTACATACGGAGCA 61.033 55.000 0.00 0.00 0.00 4.26
2613 2710 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.00 0.00 3.91
2614 2711 1.470285 GCGGACTACATACGGAGCAAA 60.470 52.381 0.00 0.00 0.00 3.68
2615 2712 2.883574 CGGACTACATACGGAGCAAAA 58.116 47.619 0.00 0.00 0.00 2.44
2616 2713 3.454375 CGGACTACATACGGAGCAAAAT 58.546 45.455 0.00 0.00 0.00 1.82
2617 2714 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
2618 2715 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2619 2716 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2620 2717 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2621 2718 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2622 2719 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2623 2720 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2624 2721 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2625 2722 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2626 2723 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2627 2724 3.686726 ACGGAGCAAAATGAGTGAATCTC 59.313 43.478 0.00 0.00 43.03 2.75
2628 2725 3.064545 CGGAGCAAAATGAGTGAATCTCC 59.935 47.826 0.00 0.00 42.12 3.71
2629 2726 4.012374 GGAGCAAAATGAGTGAATCTCCA 58.988 43.478 0.00 0.00 42.12 3.86
2630 2727 4.643784 GGAGCAAAATGAGTGAATCTCCAT 59.356 41.667 0.00 0.00 42.12 3.41
2631 2728 5.126707 GGAGCAAAATGAGTGAATCTCCATT 59.873 40.000 0.00 0.00 42.12 3.16
2632 2729 6.205101 AGCAAAATGAGTGAATCTCCATTC 57.795 37.500 0.00 0.00 42.12 2.67
2633 2730 5.950549 AGCAAAATGAGTGAATCTCCATTCT 59.049 36.000 0.00 0.00 42.12 2.40
2634 2731 7.114754 AGCAAAATGAGTGAATCTCCATTCTA 58.885 34.615 0.00 0.00 42.12 2.10
2635 2732 7.613022 AGCAAAATGAGTGAATCTCCATTCTAA 59.387 33.333 0.00 0.00 42.12 2.10
2636 2733 8.246180 GCAAAATGAGTGAATCTCCATTCTAAA 58.754 33.333 0.00 0.00 42.12 1.85
2672 2769 6.971726 ACATCCGTATGTAGTCCTTATTGA 57.028 37.500 0.00 0.00 44.66 2.57
2673 2770 7.356089 ACATCCGTATGTAGTCCTTATTGAA 57.644 36.000 0.00 0.00 44.66 2.69
2674 2771 7.788026 ACATCCGTATGTAGTCCTTATTGAAA 58.212 34.615 0.00 0.00 44.66 2.69
2675 2772 8.429641 ACATCCGTATGTAGTCCTTATTGAAAT 58.570 33.333 0.00 0.00 44.66 2.17
2676 2773 8.926710 CATCCGTATGTAGTCCTTATTGAAATC 58.073 37.037 0.00 0.00 0.00 2.17
2677 2774 8.246430 TCCGTATGTAGTCCTTATTGAAATCT 57.754 34.615 0.00 0.00 0.00 2.40
2678 2775 8.358148 TCCGTATGTAGTCCTTATTGAAATCTC 58.642 37.037 0.00 0.00 0.00 2.75
2679 2776 8.361139 CCGTATGTAGTCCTTATTGAAATCTCT 58.639 37.037 0.00 0.00 0.00 3.10
2707 2804 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
2708 2805 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2709 2806 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2710 2807 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2711 2808 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2960 3094 8.686334 GGATTGAAATCTGGCTTAAATTCTGTA 58.314 33.333 3.21 0.00 35.73 2.74
2979 3113 9.988815 ATTCTGTACTAGCTTATACTTTGATGG 57.011 33.333 0.00 0.00 0.00 3.51
3021 3155 4.318332 TGTCATTGCTAGACACTGGAAAG 58.682 43.478 0.00 0.00 40.80 2.62
3043 3177 3.244526 GGCTGGGGTTTGAAATTGATTGT 60.245 43.478 0.00 0.00 0.00 2.71
3044 3178 3.747529 GCTGGGGTTTGAAATTGATTGTG 59.252 43.478 0.00 0.00 0.00 3.33
3380 3674 0.668535 AGCGGCAAAGTTGAAGGAAC 59.331 50.000 1.45 0.00 34.40 3.62
3424 3718 2.406130 GTTGGTGAACGTGGAATCGTA 58.594 47.619 0.00 0.00 43.38 3.43
3458 3752 7.375053 GTGCTTGGAAAGGTACATTGATTTTA 58.625 34.615 0.00 0.00 46.35 1.52
3530 3824 5.771666 TCTCAATTGCTTTTCTGGTCATTCT 59.228 36.000 0.00 0.00 0.00 2.40
3706 4000 6.419484 TCTTGTACAAGAACTGATGAAGGA 57.581 37.500 31.26 8.33 43.79 3.36
3880 4179 9.271828 GATTTAACCAATTTCTCACACCATTTT 57.728 29.630 0.00 0.00 0.00 1.82
4055 4354 6.116126 AGTGTGATTTCCTGCCTAAAGATAC 58.884 40.000 0.00 0.00 0.00 2.24
4303 4604 4.298103 ACTGTTCCATTTCAGAGCTGAT 57.702 40.909 0.37 0.00 39.64 2.90
4326 4627 9.636789 TGATTGATATTCAATTCCTCAGTGATT 57.363 29.630 4.37 0.00 46.20 2.57
4340 4641 6.071334 TCCTCAGTGATTAATCGTGACTCTTT 60.071 38.462 13.65 0.00 0.00 2.52
4389 4698 3.708403 TGAGAACTGTTGAGATGCCAT 57.292 42.857 0.00 0.00 0.00 4.40
4455 4765 7.209475 TCTAAGGAAATTGACTTTGCCTTTTG 58.791 34.615 1.89 0.00 36.55 2.44
4456 4766 4.707105 AGGAAATTGACTTTGCCTTTTGG 58.293 39.130 0.00 0.00 44.18 3.28
4511 4821 3.820467 TGAACTGCCCAATTAGTCAACTG 59.180 43.478 0.00 0.00 0.00 3.16
4516 4826 2.524306 CCCAATTAGTCAACTGGCCAA 58.476 47.619 7.01 0.00 0.00 4.52
4603 4914 7.067615 TCACTAGTTTTACTTGTGGATGCAAAA 59.932 33.333 17.09 0.00 46.77 2.44
4624 4935 3.476552 ACATGTCGAAGTGAACCAATGT 58.523 40.909 0.00 0.00 0.00 2.71
4682 4993 4.843728 ACACTTTCAGTCTTTCTTCACCA 58.156 39.130 0.00 0.00 0.00 4.17
4724 5035 3.265489 ACTTCCCTTGTCCATTTCCCTA 58.735 45.455 0.00 0.00 0.00 3.53
4992 5351 2.146342 ACTTGCCTCATTGAACTGTCG 58.854 47.619 0.00 0.00 0.00 4.35
5316 5675 2.212794 TTTGGGTGTTGGGTCGTGGT 62.213 55.000 0.00 0.00 0.00 4.16
5473 5838 9.631452 TTATTTATCATCTGTAATCTGAGCTCG 57.369 33.333 9.64 4.19 0.00 5.03
5528 5924 5.808042 ACATAGTTATGTTGAAGCAGCTG 57.192 39.130 10.11 10.11 43.99 4.24
5573 5972 8.729805 TGTTACCGGTTTTTAAGAGAGTTTAA 57.270 30.769 15.04 0.00 0.00 1.52
5616 6015 2.158871 AGTCAAACAGAAACTGCCGGTA 60.159 45.455 1.90 0.00 34.37 4.02
5679 6078 0.528466 GTGCGATTCATCAGCCTCGA 60.528 55.000 0.00 0.00 33.07 4.04
5680 6079 0.390492 TGCGATTCATCAGCCTCGAT 59.610 50.000 0.00 0.00 33.07 3.59
5692 6091 4.814147 TCAGCCTCGATATTTGCTATCAG 58.186 43.478 0.00 0.00 36.75 2.90
5720 6122 4.023622 TGTTAATTTGCGACTTGCTTAGCA 60.024 37.500 1.39 1.39 46.63 3.49
5728 6130 6.618287 TGCGACTTGCTTAGCATTATTAAT 57.382 33.333 8.05 0.00 46.63 1.40
5739 6141 9.823098 GCTTAGCATTATTAATCAGTTCATCTG 57.177 33.333 0.00 0.00 44.85 2.90
5759 6161 8.461222 TCATCTGTGGACAAAATGTATGATTTC 58.539 33.333 0.00 0.00 0.00 2.17
5764 6166 8.245491 TGTGGACAAAATGTATGATTTCATGAG 58.755 33.333 3.30 0.00 37.15 2.90
5869 6275 4.503741 ACATGTATTTTTCGCTTGCTGT 57.496 36.364 0.00 0.00 0.00 4.40
5884 6290 4.271291 GCTTGCTGTATGCTTAGTAAGGAC 59.729 45.833 11.84 0.00 43.37 3.85
5967 6373 2.399356 GCTTGCTACTGGCGGAACC 61.399 63.158 0.00 0.00 45.43 3.62
6059 6465 8.713271 GGCAAGTGCAATATTCTACTATACTTC 58.287 37.037 5.52 0.00 44.36 3.01
6117 6526 8.915654 GTCTTTGTATATTTCTTTGGCAAACAG 58.084 33.333 8.93 0.00 0.00 3.16
6131 6540 3.574614 GCAAACAGCACCGAATACATTT 58.425 40.909 0.00 0.00 44.79 2.32
6138 6547 6.149633 ACAGCACCGAATACATTTTTCTTTC 58.850 36.000 0.00 0.00 0.00 2.62
6143 6552 7.593825 CACCGAATACATTTTTCTTTCTTCCT 58.406 34.615 0.00 0.00 0.00 3.36
6146 6555 7.965107 CCGAATACATTTTTCTTTCTTCCTGAG 59.035 37.037 0.00 0.00 0.00 3.35
6190 6599 9.956720 CATGATCTTTGGTTCTTATAAATGGAC 57.043 33.333 0.00 0.00 0.00 4.02
6206 6615 3.773418 TGGACGTAACCTTGAATCCAA 57.227 42.857 0.00 0.00 33.34 3.53
6213 6622 6.905578 ACGTAACCTTGAATCCAATAAACAC 58.094 36.000 0.00 0.00 0.00 3.32
6228 6637 2.128771 AACACTTGCAGTCAGTGGTT 57.871 45.000 18.69 9.44 37.83 3.67
6237 6646 4.720046 TGCAGTCAGTGGTTTGGTAATTA 58.280 39.130 0.00 0.00 0.00 1.40
6244 6678 8.041323 AGTCAGTGGTTTGGTAATTAGATGTAG 58.959 37.037 0.00 0.00 0.00 2.74
6292 6726 6.071896 TGGATGCCATTTTTCGTACATGTTTA 60.072 34.615 2.30 0.00 0.00 2.01
6299 6733 7.060633 CCATTTTTCGTACATGTTTACTTCTGC 59.939 37.037 2.30 0.00 0.00 4.26
6311 6745 0.460987 ACTTCTGCGAGTGCCTATGC 60.461 55.000 0.00 0.00 41.78 3.14
6356 6790 5.047164 TGCTTATCTGCATTCACCATTGTTT 60.047 36.000 0.00 0.00 38.12 2.83
6410 6844 4.143543 TGGAAAATGCAGTGTCAGATTCA 58.856 39.130 6.67 0.00 0.00 2.57
6644 7088 3.669122 GCGTGCTTCTTGAGTATATACGG 59.331 47.826 7.23 0.61 0.00 4.02
6668 7112 5.405935 AATGGAATACAAAGCCCAAGTTC 57.594 39.130 0.00 0.00 31.77 3.01
6680 7124 1.069022 CCCAAGTTCTGTCATGTTGCG 60.069 52.381 0.00 0.00 0.00 4.85
6777 7222 7.750229 TTCAAAGAGTTGTATTGAAGAGCAT 57.250 32.000 0.00 0.00 37.95 3.79
6779 7224 5.557891 AAGAGTTGTATTGAAGAGCATGC 57.442 39.130 10.51 10.51 0.00 4.06
6851 7301 2.424601 TGTGCAGATAAAAGGCATCAGC 59.575 45.455 0.00 0.00 40.05 4.26
6860 7310 1.908340 AAGGCATCAGCGAGCTCCTT 61.908 55.000 8.47 9.23 43.41 3.36
6872 7322 1.148048 GCTCCTTGAGGGCCTCATC 59.852 63.158 35.34 18.17 40.39 2.92
6947 7397 4.497291 TTTGTTGGACTACACCTTGACT 57.503 40.909 0.00 0.00 0.00 3.41
7038 7488 1.153647 AATGTTGAGATCGCGCCGA 60.154 52.632 0.00 2.55 41.13 5.54
7040 7490 3.607987 GTTGAGATCGCGCCGACG 61.608 66.667 0.00 0.00 39.18 5.12
7058 7508 1.315981 CGGAGCCTGCACTAGAGACA 61.316 60.000 0.00 0.00 0.00 3.41
7060 7510 1.181786 GAGCCTGCACTAGAGACACT 58.818 55.000 0.00 0.00 0.00 3.55
7147 7612 2.028020 AGGTGAAGGCTTCTTCTAACGG 60.028 50.000 26.26 0.00 45.30 4.44
7148 7613 1.732809 GTGAAGGCTTCTTCTAACGGC 59.267 52.381 26.26 0.00 45.30 5.68
7149 7614 1.000145 GAAGGCTTCTTCTAACGGCG 59.000 55.000 19.83 4.80 42.61 6.46
7150 7615 0.606604 AAGGCTTCTTCTAACGGCGA 59.393 50.000 16.62 0.00 0.00 5.54
7151 7616 0.108756 AGGCTTCTTCTAACGGCGAC 60.109 55.000 16.62 0.00 0.00 5.19
7152 7617 0.389426 GGCTTCTTCTAACGGCGACA 60.389 55.000 16.62 0.00 0.00 4.35
7153 7618 0.992802 GCTTCTTCTAACGGCGACAG 59.007 55.000 16.62 10.22 0.00 3.51
7154 7619 1.669211 GCTTCTTCTAACGGCGACAGT 60.669 52.381 16.62 0.00 0.00 3.55
7155 7620 2.415090 GCTTCTTCTAACGGCGACAGTA 60.415 50.000 16.62 2.67 0.00 2.74
7156 7621 3.829948 CTTCTTCTAACGGCGACAGTAA 58.170 45.455 16.62 5.72 0.00 2.24
7157 7622 3.921119 TCTTCTAACGGCGACAGTAAA 57.079 42.857 16.62 0.42 0.00 2.01
7158 7623 3.829948 TCTTCTAACGGCGACAGTAAAG 58.170 45.455 16.62 10.21 0.00 1.85
7174 7639 2.622064 AAAGCTGTTTCTGTCGAGGT 57.378 45.000 0.00 0.00 0.00 3.85
7215 7681 4.116328 TCTCTCTTCGCGCCACCG 62.116 66.667 0.00 0.00 37.57 4.94
7253 7719 6.958255 TGTTGTATCTGCCGAATCATATTTG 58.042 36.000 0.00 0.00 0.00 2.32
7260 7726 4.814147 TGCCGAATCATATTTGTTTTGCA 58.186 34.783 0.00 0.00 0.00 4.08
7303 7769 2.876091 TGTATTCTTTGGCGAGTCGAG 58.124 47.619 18.61 4.51 0.00 4.04
7368 7836 0.900421 TCTGATGGAGTCCACAGCTG 59.100 55.000 25.21 13.48 35.80 4.24
7420 7922 1.065709 TCTTATCCGCTGGGTTGGTTC 60.066 52.381 0.00 0.00 33.83 3.62
7523 8038 5.048504 CCGTTATGCATGCTTCATAATTCCT 60.049 40.000 20.33 0.00 38.29 3.36
7551 8068 1.064758 TCACCTTTTGTGGCTGAGTGT 60.065 47.619 0.00 0.00 45.48 3.55
7555 8072 2.233271 CTTTTGTGGCTGAGTGTGGAT 58.767 47.619 0.00 0.00 0.00 3.41
7566 8083 2.038952 TGAGTGTGGATTGAGGTGGAAG 59.961 50.000 0.00 0.00 0.00 3.46
7567 8084 2.039084 GAGTGTGGATTGAGGTGGAAGT 59.961 50.000 0.00 0.00 0.00 3.01
7568 8085 2.154462 GTGTGGATTGAGGTGGAAGTG 58.846 52.381 0.00 0.00 0.00 3.16
7569 8086 1.073763 TGTGGATTGAGGTGGAAGTGG 59.926 52.381 0.00 0.00 0.00 4.00
7570 8087 1.351017 GTGGATTGAGGTGGAAGTGGA 59.649 52.381 0.00 0.00 0.00 4.02
7598 8117 0.874175 GCCCCACGTTTTGCAAGTTC 60.874 55.000 0.00 0.00 0.00 3.01
7644 8163 2.441001 TGTAACGTAAACCTTTGGGGGA 59.559 45.455 0.00 0.00 40.03 4.81
7753 8286 2.228059 CTGATGCTGCCAGAATAAGGG 58.772 52.381 0.00 0.00 33.65 3.95
7877 8418 1.617018 CGATGGTCCCTCCTGCTTCA 61.617 60.000 0.00 0.00 37.07 3.02
7971 8512 2.552743 GGTCTTTCACCGGAAAAAGGAG 59.447 50.000 23.60 8.25 42.18 3.69
7972 8513 3.473625 GTCTTTCACCGGAAAAAGGAGA 58.526 45.455 23.60 9.94 42.18 3.71
7974 8515 1.892209 TTCACCGGAAAAAGGAGAGC 58.108 50.000 9.46 0.00 30.44 4.09
7976 8517 1.671379 ACCGGAAAAAGGAGAGCGC 60.671 57.895 9.46 0.00 0.00 5.92
7986 8530 2.517450 GGAGAGCGCGTTCCATTCG 61.517 63.158 19.83 0.00 33.55 3.34
8021 8565 4.053067 GTCAAGCCGACGACGTAG 57.947 61.111 0.00 0.00 37.88 3.51
8030 8574 1.909532 CCGACGACGTAGCTTACAAAG 59.090 52.381 0.00 0.00 37.88 2.77
8097 8656 5.490139 AATGAACATAGATCGCACCAAAG 57.510 39.130 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.763837 TCATAGTTTTCTTATCCCTATATCGGA 57.236 33.333 0.00 0.00 0.00 4.55
26 27 9.860393 ACCCTCATAGTTTTCTTATCCCTATAT 57.140 33.333 0.00 0.00 0.00 0.86
27 28 9.101325 CACCCTCATAGTTTTCTTATCCCTATA 57.899 37.037 0.00 0.00 0.00 1.31
28 29 7.474936 GCACCCTCATAGTTTTCTTATCCCTAT 60.475 40.741 0.00 0.00 0.00 2.57
29 30 6.183361 GCACCCTCATAGTTTTCTTATCCCTA 60.183 42.308 0.00 0.00 0.00 3.53
30 31 5.398012 GCACCCTCATAGTTTTCTTATCCCT 60.398 44.000 0.00 0.00 0.00 4.20
31 32 4.822350 GCACCCTCATAGTTTTCTTATCCC 59.178 45.833 0.00 0.00 0.00 3.85
32 33 5.297029 GTGCACCCTCATAGTTTTCTTATCC 59.703 44.000 5.22 0.00 0.00 2.59
33 34 5.297029 GGTGCACCCTCATAGTTTTCTTATC 59.703 44.000 26.31 0.00 0.00 1.75
34 35 5.193679 GGTGCACCCTCATAGTTTTCTTAT 58.806 41.667 26.31 0.00 0.00 1.73
35 36 4.042311 TGGTGCACCCTCATAGTTTTCTTA 59.958 41.667 32.62 5.30 34.29 2.10
36 37 3.181434 TGGTGCACCCTCATAGTTTTCTT 60.181 43.478 32.62 0.00 34.29 2.52
37 38 2.375174 TGGTGCACCCTCATAGTTTTCT 59.625 45.455 32.62 0.00 34.29 2.52
38 39 2.488153 GTGGTGCACCCTCATAGTTTTC 59.512 50.000 32.62 3.61 34.29 2.29
39 40 2.108250 AGTGGTGCACCCTCATAGTTTT 59.892 45.455 32.62 5.80 34.49 2.43
40 41 1.705186 AGTGGTGCACCCTCATAGTTT 59.295 47.619 32.62 6.49 34.49 2.66
41 42 1.003580 CAGTGGTGCACCCTCATAGTT 59.996 52.381 32.62 7.17 34.49 2.24
42 43 0.615331 CAGTGGTGCACCCTCATAGT 59.385 55.000 32.62 13.95 34.49 2.12
43 44 3.465990 CAGTGGTGCACCCTCATAG 57.534 57.895 32.62 12.81 34.49 2.23
54 55 1.370778 CATGTGTTGCGCAGTGGTG 60.371 57.895 11.31 3.79 0.00 4.17
55 56 1.525765 TCATGTGTTGCGCAGTGGT 60.526 52.632 11.31 0.00 0.00 4.16
56 57 1.081906 GTCATGTGTTGCGCAGTGG 60.082 57.895 11.31 0.00 0.00 4.00
57 58 1.439201 CGTCATGTGTTGCGCAGTG 60.439 57.895 11.31 6.34 0.00 3.66
58 59 2.606961 CCGTCATGTGTTGCGCAGT 61.607 57.895 11.31 0.00 0.00 4.40
59 60 2.174107 CCGTCATGTGTTGCGCAG 59.826 61.111 11.31 0.00 0.00 5.18
60 61 2.280457 TCCGTCATGTGTTGCGCA 60.280 55.556 5.66 5.66 0.00 6.09
61 62 1.841663 AACTCCGTCATGTGTTGCGC 61.842 55.000 0.00 0.00 0.00 6.09
62 63 0.586319 AAACTCCGTCATGTGTTGCG 59.414 50.000 0.00 0.00 0.00 4.85
63 64 1.334960 CCAAACTCCGTCATGTGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
64 65 1.266718 CCCAAACTCCGTCATGTGTTG 59.733 52.381 0.00 0.00 0.00 3.33
65 66 1.604604 CCCAAACTCCGTCATGTGTT 58.395 50.000 0.00 0.00 0.00 3.32
66 67 0.889186 GCCCAAACTCCGTCATGTGT 60.889 55.000 0.00 0.00 0.00 3.72
67 68 1.875963 GCCCAAACTCCGTCATGTG 59.124 57.895 0.00 0.00 0.00 3.21
68 69 1.671054 CGCCCAAACTCCGTCATGT 60.671 57.895 0.00 0.00 0.00 3.21
69 70 3.039202 GCGCCCAAACTCCGTCATG 62.039 63.158 0.00 0.00 0.00 3.07
70 71 2.746277 GCGCCCAAACTCCGTCAT 60.746 61.111 0.00 0.00 0.00 3.06
83 84 4.541482 CATGTCATGTGCCGCGCC 62.541 66.667 0.00 0.00 0.00 6.53
85 86 3.444717 GAGCATGTCATGTGCCGCG 62.445 63.158 14.26 0.00 43.50 6.46
86 87 2.406401 GAGCATGTCATGTGCCGC 59.594 61.111 14.26 0.00 43.50 6.53
87 88 1.307355 TTGGAGCATGTCATGTGCCG 61.307 55.000 14.26 0.00 43.50 5.69
88 89 0.889994 TTTGGAGCATGTCATGTGCC 59.110 50.000 14.26 14.83 43.50 5.01
89 90 2.273370 CTTTGGAGCATGTCATGTGC 57.727 50.000 14.26 2.43 42.81 4.57
101 102 1.276138 GTCATTTTGGGGGCTTTGGAG 59.724 52.381 0.00 0.00 0.00 3.86
102 103 1.132881 AGTCATTTTGGGGGCTTTGGA 60.133 47.619 0.00 0.00 0.00 3.53
103 104 1.351076 AGTCATTTTGGGGGCTTTGG 58.649 50.000 0.00 0.00 0.00 3.28
104 105 2.634453 AGAAGTCATTTTGGGGGCTTTG 59.366 45.455 0.00 0.00 0.00 2.77
105 106 2.634453 CAGAAGTCATTTTGGGGGCTTT 59.366 45.455 0.00 0.00 0.00 3.51
106 107 2.250924 CAGAAGTCATTTTGGGGGCTT 58.749 47.619 0.00 0.00 0.00 4.35
107 108 1.928868 CAGAAGTCATTTTGGGGGCT 58.071 50.000 0.00 0.00 0.00 5.19
108 109 0.247460 GCAGAAGTCATTTTGGGGGC 59.753 55.000 0.00 0.00 0.00 5.80
109 110 0.527565 CGCAGAAGTCATTTTGGGGG 59.472 55.000 0.00 0.00 0.00 5.40
110 111 0.527565 CCGCAGAAGTCATTTTGGGG 59.472 55.000 1.16 1.16 37.32 4.96
111 112 1.247567 ACCGCAGAAGTCATTTTGGG 58.752 50.000 0.00 0.00 0.00 4.12
112 113 2.420022 CCTACCGCAGAAGTCATTTTGG 59.580 50.000 0.00 0.00 0.00 3.28
113 114 2.420022 CCCTACCGCAGAAGTCATTTTG 59.580 50.000 0.00 0.00 0.00 2.44
114 115 2.304761 TCCCTACCGCAGAAGTCATTTT 59.695 45.455 0.00 0.00 0.00 1.82
115 116 1.906574 TCCCTACCGCAGAAGTCATTT 59.093 47.619 0.00 0.00 0.00 2.32
116 117 1.568504 TCCCTACCGCAGAAGTCATT 58.431 50.000 0.00 0.00 0.00 2.57
117 118 1.207329 GTTCCCTACCGCAGAAGTCAT 59.793 52.381 0.00 0.00 0.00 3.06
118 119 0.606604 GTTCCCTACCGCAGAAGTCA 59.393 55.000 0.00 0.00 0.00 3.41
119 120 0.108281 GGTTCCCTACCGCAGAAGTC 60.108 60.000 0.00 0.00 37.12 3.01
120 121 1.980844 GGTTCCCTACCGCAGAAGT 59.019 57.895 0.00 0.00 37.12 3.01
121 122 4.934989 GGTTCCCTACCGCAGAAG 57.065 61.111 0.00 0.00 37.12 2.85
128 129 2.582978 GAGCACGGGTTCCCTACC 59.417 66.667 6.31 0.00 46.99 3.18
129 130 2.582978 GGAGCACGGGTTCCCTAC 59.417 66.667 9.85 0.00 38.39 3.18
133 134 2.288025 TGTAGGGAGCACGGGTTCC 61.288 63.158 12.91 12.91 43.21 3.62
134 135 1.079336 GTGTAGGGAGCACGGGTTC 60.079 63.158 0.00 0.00 0.00 3.62
135 136 1.839747 TGTGTAGGGAGCACGGGTT 60.840 57.895 0.00 0.00 39.53 4.11
136 137 2.203728 TGTGTAGGGAGCACGGGT 60.204 61.111 0.00 0.00 39.53 5.28
137 138 1.899437 ATGTGTGTAGGGAGCACGGG 61.899 60.000 0.00 0.00 39.53 5.28
138 139 0.821517 TATGTGTGTAGGGAGCACGG 59.178 55.000 0.00 0.00 39.53 4.94
139 140 1.476891 ACTATGTGTGTAGGGAGCACG 59.523 52.381 0.00 0.00 39.53 5.34
140 141 2.893637 CACTATGTGTGTAGGGAGCAC 58.106 52.381 0.00 0.00 41.53 4.40
151 152 3.780294 TGGGGAATAGAAGCACTATGTGT 59.220 43.478 4.62 0.00 41.10 3.72
152 153 4.422073 TGGGGAATAGAAGCACTATGTG 57.578 45.455 4.62 0.00 41.10 3.21
153 154 4.385310 GGTTGGGGAATAGAAGCACTATGT 60.385 45.833 4.62 0.00 41.10 2.29
154 155 4.137543 GGTTGGGGAATAGAAGCACTATG 58.862 47.826 4.62 0.00 41.10 2.23
155 156 4.047883 AGGTTGGGGAATAGAAGCACTAT 58.952 43.478 0.00 0.00 42.86 2.12
156 157 3.199946 CAGGTTGGGGAATAGAAGCACTA 59.800 47.826 0.00 0.00 35.42 2.74
157 158 2.025887 CAGGTTGGGGAATAGAAGCACT 60.026 50.000 0.00 0.00 0.00 4.40
158 159 2.290960 ACAGGTTGGGGAATAGAAGCAC 60.291 50.000 0.00 0.00 0.00 4.40
159 160 1.992557 ACAGGTTGGGGAATAGAAGCA 59.007 47.619 0.00 0.00 0.00 3.91
160 161 2.369394 CACAGGTTGGGGAATAGAAGC 58.631 52.381 0.00 0.00 0.00 3.86
161 162 2.369394 GCACAGGTTGGGGAATAGAAG 58.631 52.381 0.00 0.00 0.00 2.85
162 163 1.339631 CGCACAGGTTGGGGAATAGAA 60.340 52.381 0.00 0.00 34.46 2.10
163 164 0.251916 CGCACAGGTTGGGGAATAGA 59.748 55.000 0.00 0.00 34.46 1.98
164 165 2.780595 CGCACAGGTTGGGGAATAG 58.219 57.895 0.00 0.00 34.46 1.73
171 172 3.801068 TTTCCCCCGCACAGGTTGG 62.801 63.158 0.00 0.00 38.74 3.77
172 173 2.203422 TTTCCCCCGCACAGGTTG 60.203 61.111 0.00 0.00 38.74 3.77
173 174 2.203437 GTTTCCCCCGCACAGGTT 60.203 61.111 0.00 0.00 38.74 3.50
174 175 2.976494 CTTGTTTCCCCCGCACAGGT 62.976 60.000 0.00 0.00 38.74 4.00
175 176 2.203422 TTGTTTCCCCCGCACAGG 60.203 61.111 0.00 0.00 40.63 4.00
176 177 0.821711 TTCTTGTTTCCCCCGCACAG 60.822 55.000 0.00 0.00 0.00 3.66
177 178 0.395862 TTTCTTGTTTCCCCCGCACA 60.396 50.000 0.00 0.00 0.00 4.57
178 179 0.747852 TTTTCTTGTTTCCCCCGCAC 59.252 50.000 0.00 0.00 0.00 5.34
179 180 1.036707 CTTTTCTTGTTTCCCCCGCA 58.963 50.000 0.00 0.00 0.00 5.69
180 181 0.317160 CCTTTTCTTGTTTCCCCCGC 59.683 55.000 0.00 0.00 0.00 6.13
181 182 0.317160 GCCTTTTCTTGTTTCCCCCG 59.683 55.000 0.00 0.00 0.00 5.73
182 183 0.317160 CGCCTTTTCTTGTTTCCCCC 59.683 55.000 0.00 0.00 0.00 5.40
183 184 1.037493 ACGCCTTTTCTTGTTTCCCC 58.963 50.000 0.00 0.00 0.00 4.81
184 185 2.030540 GGTACGCCTTTTCTTGTTTCCC 60.031 50.000 0.00 0.00 0.00 3.97
185 186 2.030540 GGGTACGCCTTTTCTTGTTTCC 60.031 50.000 0.00 0.00 34.45 3.13
186 187 2.619646 TGGGTACGCCTTTTCTTGTTTC 59.380 45.455 7.55 0.00 34.45 2.78
187 188 2.657143 TGGGTACGCCTTTTCTTGTTT 58.343 42.857 7.55 0.00 34.45 2.83
188 189 2.351706 TGGGTACGCCTTTTCTTGTT 57.648 45.000 7.55 0.00 34.45 2.83
189 190 2.433436 GATGGGTACGCCTTTTCTTGT 58.567 47.619 7.55 0.00 34.45 3.16
190 191 1.743394 GGATGGGTACGCCTTTTCTTG 59.257 52.381 7.55 0.00 34.45 3.02
191 192 1.677820 CGGATGGGTACGCCTTTTCTT 60.678 52.381 7.55 0.00 34.45 2.52
192 193 0.107848 CGGATGGGTACGCCTTTTCT 60.108 55.000 7.55 0.00 34.45 2.52
193 194 2.390427 CGGATGGGTACGCCTTTTC 58.610 57.895 7.55 0.00 34.45 2.29
194 195 4.629779 CGGATGGGTACGCCTTTT 57.370 55.556 7.55 0.00 34.45 2.27
202 203 1.529226 CAAAAGTGTGCGGATGGGTA 58.471 50.000 0.00 0.00 0.00 3.69
362 365 7.880195 TGAACATTTTGTTTTCCAGAAAAAGGA 59.120 29.630 7.12 0.00 41.28 3.36
435 441 9.260002 GAACATTGTTCCAATTCACTAACATTT 57.740 29.630 17.07 0.00 32.31 2.32
442 448 4.578516 TCGTGAACATTGTTCCAATTCACT 59.421 37.500 23.22 0.00 44.45 3.41
506 528 9.013229 TGAACATTACTCACTAGCATTTTTGAT 57.987 29.630 0.00 0.00 0.00 2.57
647 669 2.910482 CGCAAAAACATGAGGTTCATCG 59.090 45.455 0.00 0.00 39.29 3.84
657 679 6.911511 ACATTTTTGGAATTCGCAAAAACATG 59.088 30.769 29.49 26.93 38.04 3.21
660 682 6.963805 TGAACATTTTTGGAATTCGCAAAAAC 59.036 30.769 29.49 22.51 38.04 2.43
682 704 7.345691 TCCAGGATATTGTTTAGATGCTTGAA 58.654 34.615 0.00 0.00 0.00 2.69
687 709 8.632679 TGAAATTCCAGGATATTGTTTAGATGC 58.367 33.333 0.00 0.00 0.00 3.91
705 727 2.495669 TCCCCGCATTTTCTGAAATTCC 59.504 45.455 3.31 0.00 33.25 3.01
707 729 4.824479 ATTCCCCGCATTTTCTGAAATT 57.176 36.364 3.31 0.00 33.25 1.82
722 744 2.203494 GGGCCGATCCAATTCCCC 60.203 66.667 0.00 0.00 36.21 4.81
740 762 2.124901 CGGGGTGTGTGTGTGTGT 60.125 61.111 0.00 0.00 0.00 3.72
744 766 1.227734 GTAAGCGGGGTGTGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
745 767 2.314647 CGTAAGCGGGGTGTGTGTG 61.315 63.158 0.00 0.00 0.00 3.82
746 768 2.029964 CGTAAGCGGGGTGTGTGT 59.970 61.111 0.00 0.00 0.00 3.72
747 769 2.029964 ACGTAAGCGGGGTGTGTG 59.970 61.111 0.00 0.00 43.45 3.82
748 770 2.029964 CACGTAAGCGGGGTGTGT 59.970 61.111 0.00 0.00 43.45 3.72
749 771 1.736645 CTCACGTAAGCGGGGTGTG 60.737 63.158 0.00 0.00 42.74 3.82
750 772 2.654877 CTCACGTAAGCGGGGTGT 59.345 61.111 0.00 0.00 42.74 4.16
751 773 2.813908 GCTCACGTAAGCGGGGTG 60.814 66.667 0.00 0.00 42.74 4.61
752 774 4.078516 GGCTCACGTAAGCGGGGT 62.079 66.667 4.21 0.00 43.45 4.95
753 775 4.832608 GGGCTCACGTAAGCGGGG 62.833 72.222 4.21 0.00 43.45 5.73
754 776 4.077184 TGGGCTCACGTAAGCGGG 62.077 66.667 4.21 0.00 43.45 6.13
755 777 2.501223 TTCTGGGCTCACGTAAGCGG 62.501 60.000 4.21 0.00 43.45 5.52
756 778 0.460284 ATTCTGGGCTCACGTAAGCG 60.460 55.000 4.21 0.00 43.45 4.68
757 779 2.596904 TATTCTGGGCTCACGTAAGC 57.403 50.000 0.63 0.63 45.62 3.09
786 808 5.577554 ACCGCTCACGTTTAATTTTGTTTTT 59.422 32.000 0.00 0.00 37.70 1.94
804 827 2.743928 CTGTTGGGCTCACCGCTC 60.744 66.667 0.00 0.00 44.64 5.03
805 828 4.335647 CCTGTTGGGCTCACCGCT 62.336 66.667 0.00 0.00 44.64 5.52
894 920 2.904866 GCAGTGCGTTTGTGGGGA 60.905 61.111 0.00 0.00 0.00 4.81
895 921 3.977244 GGCAGTGCGTTTGTGGGG 61.977 66.667 9.45 0.00 0.00 4.96
897 923 4.980903 GCGGCAGTGCGTTTGTGG 62.981 66.667 9.45 0.00 0.00 4.17
1367 1433 1.059913 AGGAGGCAGCACAGTTAAGT 58.940 50.000 0.00 0.00 0.00 2.24
1426 1504 5.047872 GGAGCTCCTTAATACTGTAGTAGGC 60.048 48.000 26.25 0.00 33.52 3.93
1509 1588 2.463620 GCTCGATTCCACATGCGCA 61.464 57.895 14.96 14.96 0.00 6.09
1610 1689 2.037772 AGGTGATCGGGCATCTATTCAC 59.962 50.000 0.00 0.00 34.24 3.18
1653 1732 1.419374 CATGGCGCGTTAGTATCTCC 58.581 55.000 8.43 0.00 0.00 3.71
1664 1743 1.064621 CCTGATTTTCCATGGCGCG 59.935 57.895 6.96 0.00 0.00 6.86
1710 1790 2.979814 TGTGTGAATATCTCGGGTGG 57.020 50.000 0.00 0.00 0.00 4.61
1983 2063 4.039488 TGAAACAGGAATTGATGCAAAGCT 59.961 37.500 0.00 0.00 0.00 3.74
1987 2067 6.350361 CCACTATGAAACAGGAATTGATGCAA 60.350 38.462 0.00 0.00 0.00 4.08
2017 2097 4.363991 AATCCTCCATTCTATCACTGCC 57.636 45.455 0.00 0.00 0.00 4.85
2048 2128 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2049 2129 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2050 2130 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2051 2131 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2052 2132 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2053 2133 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2054 2134 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2055 2135 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2067 2147 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2068 2148 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2069 2149 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2070 2150 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2071 2151 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2072 2152 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
2080 2160 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
2081 2161 9.733219 GAGCGTTTAGATTACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.81 3.06
2082 2162 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
2083 2163 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
2097 2177 9.745880 CTGTAAAGGAATATAAGAGCGTTTAGA 57.254 33.333 0.00 0.00 0.00 2.10
2098 2178 9.745880 TCTGTAAAGGAATATAAGAGCGTTTAG 57.254 33.333 0.00 0.00 0.00 1.85
2099 2179 9.745880 CTCTGTAAAGGAATATAAGAGCGTTTA 57.254 33.333 0.00 0.00 0.00 2.01
2100 2180 7.711339 CCTCTGTAAAGGAATATAAGAGCGTTT 59.289 37.037 0.00 0.00 38.87 3.60
2101 2181 7.210873 CCTCTGTAAAGGAATATAAGAGCGTT 58.789 38.462 0.00 0.00 38.87 4.84
2102 2182 6.239345 CCCTCTGTAAAGGAATATAAGAGCGT 60.239 42.308 0.00 0.00 38.87 5.07
2103 2183 6.015350 TCCCTCTGTAAAGGAATATAAGAGCG 60.015 42.308 0.00 0.00 38.87 5.03
2104 2184 7.015779 ACTCCCTCTGTAAAGGAATATAAGAGC 59.984 40.741 0.00 0.00 38.87 4.09
2105 2185 8.485578 ACTCCCTCTGTAAAGGAATATAAGAG 57.514 38.462 0.00 0.00 38.87 2.85
2106 2186 9.947189 TTACTCCCTCTGTAAAGGAATATAAGA 57.053 33.333 0.00 0.00 38.87 2.10
2110 2190 9.004231 ACATTTACTCCCTCTGTAAAGGAATAT 57.996 33.333 14.84 0.00 41.34 1.28
2111 2191 8.388656 ACATTTACTCCCTCTGTAAAGGAATA 57.611 34.615 14.84 0.00 41.34 1.75
2112 2192 7.272144 ACATTTACTCCCTCTGTAAAGGAAT 57.728 36.000 14.84 0.00 41.34 3.01
2113 2193 6.697641 ACATTTACTCCCTCTGTAAAGGAA 57.302 37.500 14.84 0.00 41.34 3.36
2114 2194 6.697641 AACATTTACTCCCTCTGTAAAGGA 57.302 37.500 14.84 0.00 41.34 3.36
2115 2195 7.881232 TGTTAACATTTACTCCCTCTGTAAAGG 59.119 37.037 3.59 8.73 43.15 3.11
2116 2196 8.842358 TGTTAACATTTACTCCCTCTGTAAAG 57.158 34.615 3.59 0.00 41.32 1.85
2117 2197 9.444600 GATGTTAACATTTACTCCCTCTGTAAA 57.555 33.333 21.63 0.00 41.94 2.01
2118 2198 8.822805 AGATGTTAACATTTACTCCCTCTGTAA 58.177 33.333 21.63 0.00 36.57 2.41
2119 2199 8.375493 AGATGTTAACATTTACTCCCTCTGTA 57.625 34.615 21.63 0.00 36.57 2.74
2120 2200 7.259088 AGATGTTAACATTTACTCCCTCTGT 57.741 36.000 21.63 0.00 36.57 3.41
2121 2201 7.281100 GGAAGATGTTAACATTTACTCCCTCTG 59.719 40.741 21.63 0.00 36.57 3.35
2122 2202 7.037586 TGGAAGATGTTAACATTTACTCCCTCT 60.038 37.037 21.63 9.32 36.57 3.69
2123 2203 7.065923 GTGGAAGATGTTAACATTTACTCCCTC 59.934 40.741 21.63 9.38 36.57 4.30
2124 2204 6.884836 GTGGAAGATGTTAACATTTACTCCCT 59.115 38.462 21.63 9.79 36.57 4.20
2125 2205 6.657541 TGTGGAAGATGTTAACATTTACTCCC 59.342 38.462 21.63 12.40 36.57 4.30
2126 2206 7.681939 TGTGGAAGATGTTAACATTTACTCC 57.318 36.000 21.63 21.24 36.57 3.85
2127 2207 8.784043 AGTTGTGGAAGATGTTAACATTTACTC 58.216 33.333 21.63 17.04 36.57 2.59
2128 2208 8.691661 AGTTGTGGAAGATGTTAACATTTACT 57.308 30.769 21.63 11.84 36.57 2.24
2171 2254 9.953565 ACAAAAAGAAGGCAGTACTAATATACA 57.046 29.630 0.00 0.00 0.00 2.29
2492 2589 1.946768 TGAGTTACTTGCACCAACAGC 59.053 47.619 6.93 0.00 0.00 4.40
2493 2590 3.206150 ACTGAGTTACTTGCACCAACAG 58.794 45.455 6.93 0.00 0.00 3.16
2553 2650 6.494146 AGGACTTATATTTAGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2554 2651 6.379579 AGGACTTATATTTAGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2555 2652 6.667558 AGGACTTATATTTAGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2556 2653 8.959705 AAAAGGACTTATATTTAGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2569 2666 9.561069 GCATTGGAATCTCTAAAAGGACTTATA 57.439 33.333 0.00 0.00 0.00 0.98
2570 2667 7.227512 CGCATTGGAATCTCTAAAAGGACTTAT 59.772 37.037 0.00 0.00 0.00 1.73
2571 2668 6.538742 CGCATTGGAATCTCTAAAAGGACTTA 59.461 38.462 0.00 0.00 0.00 2.24
2572 2669 5.355350 CGCATTGGAATCTCTAAAAGGACTT 59.645 40.000 0.00 0.00 0.00 3.01
2573 2670 4.878397 CGCATTGGAATCTCTAAAAGGACT 59.122 41.667 0.00 0.00 0.00 3.85
2574 2671 4.035675 CCGCATTGGAATCTCTAAAAGGAC 59.964 45.833 0.00 0.00 42.00 3.85
2575 2672 4.080582 TCCGCATTGGAATCTCTAAAAGGA 60.081 41.667 0.00 0.00 46.38 3.36
2576 2673 4.199310 TCCGCATTGGAATCTCTAAAAGG 58.801 43.478 0.00 0.00 46.38 3.11
2589 2686 1.067974 TCCGTATGTAGTCCGCATTGG 59.932 52.381 0.00 0.00 40.09 3.16
2590 2687 2.394708 CTCCGTATGTAGTCCGCATTG 58.605 52.381 0.00 0.00 0.00 2.82
2591 2688 1.269621 GCTCCGTATGTAGTCCGCATT 60.270 52.381 0.00 0.00 0.00 3.56
2592 2689 0.314302 GCTCCGTATGTAGTCCGCAT 59.686 55.000 0.00 0.00 0.00 4.73
2593 2690 1.033202 TGCTCCGTATGTAGTCCGCA 61.033 55.000 0.00 0.00 0.00 5.69
2594 2691 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.00 0.00 0.00 5.54
2595 2692 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
2596 2693 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2597 2694 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2598 2695 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2599 2696 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2600 2697 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2601 2698 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2602 2699 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2603 2700 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2604 2701 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2605 2702 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2606 2703 3.064545 GGAGATTCACTCATTTTGCTCCG 59.935 47.826 0.00 0.00 46.54 4.63
2607 2704 4.012374 TGGAGATTCACTCATTTTGCTCC 58.988 43.478 0.00 0.00 46.54 4.70
2608 2705 5.831702 ATGGAGATTCACTCATTTTGCTC 57.168 39.130 0.00 0.00 46.54 4.26
2609 2706 5.950549 AGAATGGAGATTCACTCATTTTGCT 59.049 36.000 0.00 0.00 46.54 3.91
2610 2707 6.205101 AGAATGGAGATTCACTCATTTTGC 57.795 37.500 0.00 0.00 46.54 3.68
2639 2736 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
2640 2737 8.546322 AGGACTACATACGGATGTATATAGACA 58.454 37.037 20.64 2.07 45.42 3.41
2641 2738 8.961294 AGGACTACATACGGATGTATATAGAC 57.039 38.462 20.64 10.95 45.42 2.59
2646 2743 9.743581 TCAATAAGGACTACATACGGATGTATA 57.256 33.333 20.64 10.32 45.42 1.47
2647 2744 8.645814 TCAATAAGGACTACATACGGATGTAT 57.354 34.615 20.64 11.04 45.42 2.29
2648 2745 8.467963 TTCAATAAGGACTACATACGGATGTA 57.532 34.615 19.32 19.32 44.77 2.29
2650 2747 8.833231 ATTTCAATAAGGACTACATACGGATG 57.167 34.615 5.94 5.94 39.16 3.51
2651 2748 8.871125 AGATTTCAATAAGGACTACATACGGAT 58.129 33.333 0.00 0.00 0.00 4.18
2652 2749 8.246430 AGATTTCAATAAGGACTACATACGGA 57.754 34.615 0.00 0.00 0.00 4.69
2653 2750 8.361139 AGAGATTTCAATAAGGACTACATACGG 58.639 37.037 0.00 0.00 0.00 4.02
2681 2778 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2682 2779 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2683 2780 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2684 2781 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2685 2782 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2686 2783 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2689 2786 8.810041 GGAATACTCCCTCCGTTTCTAAATATA 58.190 37.037 0.00 0.00 35.42 0.86
2690 2787 7.513091 AGGAATACTCCCTCCGTTTCTAAATAT 59.487 37.037 0.00 0.00 43.64 1.28
2691 2788 6.842807 AGGAATACTCCCTCCGTTTCTAAATA 59.157 38.462 0.00 0.00 43.64 1.40
2692 2789 5.666265 AGGAATACTCCCTCCGTTTCTAAAT 59.334 40.000 0.00 0.00 43.64 1.40
2693 2790 5.028131 AGGAATACTCCCTCCGTTTCTAAA 58.972 41.667 0.00 0.00 43.64 1.85
2694 2791 4.617593 AGGAATACTCCCTCCGTTTCTAA 58.382 43.478 0.00 0.00 43.64 2.10
2695 2792 4.261411 AGGAATACTCCCTCCGTTTCTA 57.739 45.455 0.00 0.00 43.64 2.10
2696 2793 3.117552 AGGAATACTCCCTCCGTTTCT 57.882 47.619 0.00 0.00 43.64 2.52
2697 2794 3.908643 AAGGAATACTCCCTCCGTTTC 57.091 47.619 0.00 0.00 43.64 2.78
2698 2795 4.652679 AAAAGGAATACTCCCTCCGTTT 57.347 40.909 0.00 0.00 43.64 3.60
2699 2796 5.970501 ATAAAAGGAATACTCCCTCCGTT 57.029 39.130 0.00 0.00 43.64 4.44
2700 2797 5.970501 AATAAAAGGAATACTCCCTCCGT 57.029 39.130 0.00 0.00 43.64 4.69
2701 2798 6.592870 AGAAATAAAAGGAATACTCCCTCCG 58.407 40.000 0.00 0.00 43.64 4.63
2702 2799 7.807198 AGAGAAATAAAAGGAATACTCCCTCC 58.193 38.462 0.00 0.00 43.64 4.30
2960 3094 5.989477 TGCACCATCAAAGTATAAGCTAGT 58.011 37.500 0.00 0.00 0.00 2.57
2979 3113 3.255642 ACAAACCAATGGTACTCATGCAC 59.744 43.478 4.88 0.00 33.12 4.57
3021 3155 3.244526 ACAATCAATTTCAAACCCCAGCC 60.245 43.478 0.00 0.00 0.00 4.85
3043 3177 9.770097 GAAGATCATCCTATTTTATGACTGTCA 57.230 33.333 13.60 13.60 35.06 3.58
3044 3178 9.770097 TGAAGATCATCCTATTTTATGACTGTC 57.230 33.333 0.00 0.00 35.06 3.51
3190 3484 3.616956 TGGTAGCTCAGGACAGAAATG 57.383 47.619 0.00 0.00 0.00 2.32
3380 3674 6.025280 CCGTAAGAAAATAACCATCCGTTTG 58.975 40.000 0.00 0.00 43.02 2.93
3464 3758 9.495754 GACATGAATGAAGTATTTAAGAACTGC 57.504 33.333 0.00 0.00 0.00 4.40
3706 4000 9.106070 CGCTTATATAGGTTTAACTGGAAAGTT 57.894 33.333 0.00 0.00 35.93 2.66
3730 4024 7.524912 TCTCGTCATTATAACCTATTAGACGC 58.475 38.462 0.00 0.00 44.93 5.19
3856 4150 8.482128 AGAAAATGGTGTGAGAAATTGGTTAAA 58.518 29.630 0.00 0.00 0.00 1.52
3880 4179 0.321564 CACGGACCTGCAAATGGAGA 60.322 55.000 3.25 0.00 35.31 3.71
4326 4627 6.906659 ACGTCTAGAAAAAGAGTCACGATTA 58.093 36.000 0.00 0.00 0.00 1.75
4340 4641 9.610705 ACTGTCAGATAACTATACGTCTAGAAA 57.389 33.333 14.28 2.89 0.00 2.52
4389 4698 2.859165 TGCAAAACCCAACCAAAACA 57.141 40.000 0.00 0.00 0.00 2.83
4455 4765 7.326305 CACTGCTACATACAATAACTCGATACC 59.674 40.741 0.00 0.00 0.00 2.73
4456 4766 7.861372 ACACTGCTACATACAATAACTCGATAC 59.139 37.037 0.00 0.00 0.00 2.24
4511 4821 2.863809 CCTACATACATTCCCTTGGCC 58.136 52.381 0.00 0.00 0.00 5.36
4516 4826 3.181465 CGAGTTGCCTACATACATTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
4603 4914 3.476552 ACATTGGTTCACTTCGACATGT 58.523 40.909 0.00 0.00 0.00 3.21
4624 4935 7.391554 CCACTCATTCCAGAATTTAGACTTGAA 59.608 37.037 6.53 0.00 0.00 2.69
4632 4943 9.177608 CAATAGTTCCACTCATTCCAGAATTTA 57.822 33.333 0.00 0.00 0.00 1.40
4768 5126 5.018539 CCTTGATGGTTCGGTCACTAATA 57.981 43.478 0.00 0.00 0.00 0.98
4992 5351 7.038729 TCCTACAGAATCATGGTAATGAGATCC 60.039 40.741 0.00 0.00 45.88 3.36
5296 5655 0.825840 CCACGACCCAACACCCAAAT 60.826 55.000 0.00 0.00 0.00 2.32
5311 5670 0.966920 ACAAGGGAGTCAGTACCACG 59.033 55.000 0.00 0.00 0.00 4.94
5316 5675 3.646162 ACATCACAACAAGGGAGTCAGTA 59.354 43.478 0.00 0.00 29.38 2.74
5514 5879 2.954318 AGTGTTTCAGCTGCTTCAACAT 59.046 40.909 20.52 10.90 30.41 2.71
5516 5881 4.470462 CATAGTGTTTCAGCTGCTTCAAC 58.530 43.478 9.47 9.58 0.00 3.18
5518 5883 2.485426 GCATAGTGTTTCAGCTGCTTCA 59.515 45.455 9.47 4.65 0.00 3.02
5519 5884 2.746362 AGCATAGTGTTTCAGCTGCTTC 59.254 45.455 9.47 1.83 36.62 3.86
5521 5886 2.082231 CAGCATAGTGTTTCAGCTGCT 58.918 47.619 9.47 0.00 44.98 4.24
5528 5924 3.499918 ACAGCAGTTCAGCATAGTGTTTC 59.500 43.478 0.00 0.00 36.85 2.78
5573 5972 6.299141 ACTGAACACAAGTCAGGTTCATTAT 58.701 36.000 6.87 0.00 46.75 1.28
5616 6015 6.370994 CACACTGCTCTCTAATGAAACAGAAT 59.629 38.462 0.00 0.00 0.00 2.40
5692 6091 6.031549 AGCAAGTCGCAAATTAACAAAAAC 57.968 33.333 0.00 0.00 46.13 2.43
5739 6141 8.461222 TCTCATGAAATCATACATTTTGTCCAC 58.539 33.333 0.00 0.00 34.26 4.02
5869 6275 4.274794 TGGGGAGTCCTTACTAAGCATA 57.725 45.455 9.58 0.00 35.56 3.14
5884 6290 3.923354 CTGACAGTCAGTTGGGGAG 57.077 57.895 21.00 0.00 39.58 4.30
5967 6373 4.635765 TGCCAAAGGTTAAGATCAGAATCG 59.364 41.667 0.00 0.00 36.97 3.34
6059 6465 3.619929 GCATGCAAAGCTTTTTATCCTGG 59.380 43.478 14.21 0.00 0.00 4.45
6117 6526 6.308041 GGAAGAAAGAAAAATGTATTCGGTGC 59.692 38.462 0.00 0.00 32.04 5.01
6131 6540 9.052759 GTGTTGTTATACTCAGGAAGAAAGAAA 57.947 33.333 0.00 0.00 0.00 2.52
6138 6547 6.037786 TCCAGTGTTGTTATACTCAGGAAG 57.962 41.667 0.00 0.00 28.35 3.46
6143 6552 7.220740 TCATGTTTCCAGTGTTGTTATACTCA 58.779 34.615 0.00 0.00 0.00 3.41
6146 6555 8.268850 AGATCATGTTTCCAGTGTTGTTATAC 57.731 34.615 0.00 0.00 0.00 1.47
6190 6599 7.141100 AGTGTTTATTGGATTCAAGGTTACG 57.859 36.000 0.00 0.00 36.19 3.18
6213 6622 1.392589 ACCAAACCACTGACTGCAAG 58.607 50.000 0.00 0.00 42.29 4.01
6244 6678 8.956426 TCCATCAAAACTCAAGAATATGGTAAC 58.044 33.333 0.00 0.00 35.29 2.50
6257 6691 5.486735 AAAATGGCATCCATCAAAACTCA 57.513 34.783 0.00 0.00 44.40 3.41
6262 6696 4.533919 ACGAAAAATGGCATCCATCAAA 57.466 36.364 0.00 0.00 44.40 2.69
6292 6726 0.460987 GCATAGGCACTCGCAGAAGT 60.461 55.000 0.00 0.00 41.75 3.01
6299 6733 0.531532 CAAGGAGGCATAGGCACTCG 60.532 60.000 0.15 0.00 43.71 4.18
6311 6745 4.999950 GCATTGTACATAGATCCAAGGAGG 59.000 45.833 0.00 0.00 39.47 4.30
6356 6790 4.532521 CCTCTTAAAACTTCCTCCTCCTGA 59.467 45.833 0.00 0.00 0.00 3.86
6410 6844 7.197017 CGAGTTGTATTGCTCTTGTATAGTCT 58.803 38.462 0.00 0.00 0.00 3.24
6644 7088 3.769300 ACTTGGGCTTTGTATTCCATTCC 59.231 43.478 0.00 0.00 0.00 3.01
6668 7112 1.268692 ACAAACTGCGCAACATGACAG 60.269 47.619 13.05 0.00 36.22 3.51
6755 7200 5.798934 GCATGCTCTTCAATACAACTCTTTG 59.201 40.000 11.37 0.00 38.83 2.77
6756 7201 5.709164 AGCATGCTCTTCAATACAACTCTTT 59.291 36.000 16.30 0.00 0.00 2.52
6777 7222 5.308014 ACAGTTTGTCACAGATTATCAGCA 58.692 37.500 0.00 0.00 0.00 4.41
6779 7224 7.148407 GGGTAACAGTTTGTCACAGATTATCAG 60.148 40.741 0.00 0.00 39.74 2.90
6851 7301 3.080121 AGGCCCTCAAGGAGCTCG 61.080 66.667 7.83 0.00 38.24 5.03
6872 7322 3.689161 TGAAGTGTCTTTGCGAATATGGG 59.311 43.478 0.00 0.00 0.00 4.00
7038 7488 1.000771 TCTCTAGTGCAGGCTCCGT 60.001 57.895 0.00 0.00 0.00 4.69
7040 7490 0.174617 GTGTCTCTAGTGCAGGCTCC 59.825 60.000 0.00 0.00 0.00 4.70
7058 7508 1.903404 CTTGCCCGGCTTTTCCAGT 60.903 57.895 11.61 0.00 34.01 4.00
7060 7510 1.152652 TTCTTGCCCGGCTTTTCCA 60.153 52.632 11.61 0.00 34.01 3.53
7152 7617 3.069729 ACCTCGACAGAAACAGCTTTACT 59.930 43.478 0.00 0.00 0.00 2.24
7153 7618 3.184581 CACCTCGACAGAAACAGCTTTAC 59.815 47.826 0.00 0.00 0.00 2.01
7154 7619 3.181469 ACACCTCGACAGAAACAGCTTTA 60.181 43.478 0.00 0.00 0.00 1.85
7155 7620 2.213499 CACCTCGACAGAAACAGCTTT 58.787 47.619 0.00 0.00 0.00 3.51
7156 7621 1.139058 ACACCTCGACAGAAACAGCTT 59.861 47.619 0.00 0.00 0.00 3.74
7157 7622 0.753262 ACACCTCGACAGAAACAGCT 59.247 50.000 0.00 0.00 0.00 4.24
7158 7623 2.433868 TACACCTCGACAGAAACAGC 57.566 50.000 0.00 0.00 0.00 4.40
7215 7681 6.253746 CAGATACAACAGCAGCTACAAAATC 58.746 40.000 0.00 0.00 0.00 2.17
7253 7719 2.639751 GTGTCTGTCACGATGCAAAAC 58.360 47.619 0.00 0.00 37.31 2.43
7303 7769 1.135460 GCCTGAAGCAAGCATGTCTTC 60.135 52.381 14.88 14.88 42.97 2.87
7368 7836 7.222611 TGCAACAATTTCTGAAACTAAAAGCTC 59.777 33.333 4.73 0.00 0.00 4.09
7449 7964 2.028112 AGTGGAGCAAGCGACTTTATGA 60.028 45.455 0.00 0.00 0.00 2.15
7551 8068 1.630369 CTCCACTTCCACCTCAATCCA 59.370 52.381 0.00 0.00 0.00 3.41
7555 8072 0.843309 TTGCTCCACTTCCACCTCAA 59.157 50.000 0.00 0.00 0.00 3.02
7580 8099 0.744281 AGAACTTGCAAAACGTGGGG 59.256 50.000 0.00 0.00 0.00 4.96
7598 8117 9.888878 CACAACTGCTATGGAATTTTATATCAG 57.111 33.333 10.02 10.02 32.25 2.90
7644 8163 2.119801 AGGCGATGACAGATGCTTTT 57.880 45.000 0.00 0.00 0.00 2.27
7704 8237 1.153066 TGCCGAACTGAAAGCACCA 60.153 52.632 0.00 0.00 37.60 4.17
7733 8266 2.228059 CCCTTATTCTGGCAGCATCAG 58.772 52.381 10.34 5.44 0.00 2.90
7753 8286 4.616802 CCTGTGAAATTCGCACAACAATAC 59.383 41.667 4.98 0.00 44.75 1.89
7796 8333 0.249073 CCGGACGTTGATAGGCTCAG 60.249 60.000 0.00 0.00 34.68 3.35
7798 8335 0.527817 CACCGGACGTTGATAGGCTC 60.528 60.000 9.46 0.00 0.00 4.70
7877 8418 2.066262 CTGGCGACGTTGAGTGTTTAT 58.934 47.619 7.08 0.00 0.00 1.40
7966 8507 0.741221 GAATGGAACGCGCTCTCCTT 60.741 55.000 21.14 14.30 32.51 3.36
7971 8512 3.564027 CCCGAATGGAACGCGCTC 61.564 66.667 5.73 2.37 37.49 5.03
7972 8513 4.077184 TCCCGAATGGAACGCGCT 62.077 61.111 5.73 0.00 41.40 5.92
7986 8530 1.940613 GACATAACGTCCAAGCATCCC 59.059 52.381 0.00 0.00 38.85 3.85
8012 8556 4.030306 CACATCTTTGTAAGCTACGTCGTC 59.970 45.833 0.00 0.00 33.76 4.20
8021 8565 4.228912 ACAGTTGCACATCTTTGTAAGC 57.771 40.909 0.00 0.00 33.76 3.09
8030 8574 1.242076 AGGCTCAACAGTTGCACATC 58.758 50.000 8.58 0.00 0.00 3.06
8084 8643 1.745141 GCATCTCCTTTGGTGCGATCT 60.745 52.381 0.00 0.00 0.00 2.75
8097 8656 0.099436 GCCACACAAATCGCATCTCC 59.901 55.000 0.00 0.00 0.00 3.71
8134 8693 2.162809 GTGGTGTTTCTTGGTTCGTTGT 59.837 45.455 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.