Multiple sequence alignment - TraesCS2D01G444700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G444700 chr2D 100.000 4067 0 0 1 4067 555867963 555872029 0.000000e+00 7511.0
1 TraesCS2D01G444700 chr2D 84.778 473 55 10 2227 2686 555615151 555615619 4.270000e-125 459.0
2 TraesCS2D01G444700 chr2D 98.780 246 3 0 120 365 555861997 555862242 5.570000e-119 438.0
3 TraesCS2D01G444700 chr2D 100.000 231 0 0 4456 4686 555872418 555872648 1.200000e-115 427.0
4 TraesCS2D01G444700 chr2D 95.708 233 5 3 114 346 555857968 555858195 2.060000e-98 370.0
5 TraesCS2D01G444700 chr2D 75.904 747 160 17 1459 2195 555852792 555853528 9.580000e-97 364.0
6 TraesCS2D01G444700 chr2D 81.490 443 75 7 2251 2689 593172454 593172015 1.600000e-94 357.0
7 TraesCS2D01G444700 chr2D 97.321 112 3 0 1 112 555863204 555863315 1.720000e-44 191.0
8 TraesCS2D01G444700 chr2D 97.273 110 3 0 1 110 6284693 6284802 2.230000e-43 187.0
9 TraesCS2D01G444700 chr2D 94.915 118 2 1 357 470 555862317 555862434 1.040000e-41 182.0
10 TraesCS2D01G444700 chr2D 95.536 112 4 1 1 112 6298051 6298161 1.340000e-40 178.0
11 TraesCS2D01G444700 chr2D 94.828 116 2 1 357 468 555861344 555861459 1.340000e-40 178.0
12 TraesCS2D01G444700 chr2D 90.323 124 11 1 494 617 579754483 579754361 1.350000e-35 161.0
13 TraesCS2D01G444700 chr2D 89.431 123 11 2 494 615 126951637 126951516 2.260000e-33 154.0
14 TraesCS2D01G444700 chr2D 84.524 84 13 0 1464 1547 593205744 593205661 3.000000e-12 84.2
15 TraesCS2D01G444700 chr2D 84.337 83 13 0 1465 1547 593173463 593173381 1.080000e-11 82.4
16 TraesCS2D01G444700 chr2B 92.618 1463 98 6 1343 2799 662651235 662652693 0.000000e+00 2095.0
17 TraesCS2D01G444700 chr2B 90.167 956 60 16 2807 3732 662652776 662653727 0.000000e+00 1214.0
18 TraesCS2D01G444700 chr2B 93.412 425 16 5 911 1323 662650731 662651155 1.850000e-173 619.0
19 TraesCS2D01G444700 chr2B 85.093 483 53 12 2217 2686 662377705 662378181 4.240000e-130 475.0
20 TraesCS2D01G444700 chr2B 83.130 409 67 2 2257 2664 662579785 662580192 5.730000e-99 372.0
21 TraesCS2D01G444700 chr2B 76.026 755 149 22 1459 2195 662586603 662587343 3.450000e-96 363.0
22 TraesCS2D01G444700 chr2B 85.630 341 43 6 494 833 662650293 662650628 2.070000e-93 353.0
23 TraesCS2D01G444700 chr2B 79.523 503 91 12 2196 2693 719453048 719452553 9.650000e-92 348.0
24 TraesCS2D01G444700 chr2B 90.476 147 14 0 3771 3917 662653865 662654011 1.330000e-45 195.0
25 TraesCS2D01G444700 chr2B 92.105 114 7 1 1 112 19137975 19137862 4.850000e-35 159.0
26 TraesCS2D01G444700 chr2B 92.105 114 7 2 1 112 19142735 19142622 4.850000e-35 159.0
27 TraesCS2D01G444700 chr2B 88.350 103 12 0 1463 1565 719453850 719453748 1.770000e-24 124.0
28 TraesCS2D01G444700 chr2B 82.524 103 18 0 1463 1565 719443621 719443519 1.800000e-14 91.6
29 TraesCS2D01G444700 chr2A 88.367 1255 96 24 2834 4043 695297208 695298457 0.000000e+00 1463.0
30 TraesCS2D01G444700 chr2A 92.466 584 40 4 1617 2200 695295389 695295968 0.000000e+00 832.0
31 TraesCS2D01G444700 chr2A 89.100 578 47 13 2212 2777 695296404 695296977 0.000000e+00 704.0
32 TraesCS2D01G444700 chr2A 85.926 540 38 16 799 1313 695294149 695294675 4.120000e-150 542.0
33 TraesCS2D01G444700 chr2A 85.300 483 61 9 2208 2686 695154850 695155326 1.520000e-134 490.0
34 TraesCS2D01G444700 chr2A 77.793 743 154 10 1463 2195 695161525 695162266 9.250000e-122 448.0
35 TraesCS2D01G444700 chr2A 81.982 444 72 8 2254 2693 727713271 727712832 2.060000e-98 370.0
36 TraesCS2D01G444700 chr2A 75.535 748 161 13 1459 2196 695276855 695277590 9.650000e-92 348.0
37 TraesCS2D01G444700 chr2A 75.166 753 143 23 1463 2201 727925585 727924863 9.790000e-82 315.0
38 TraesCS2D01G444700 chr2A 82.083 240 34 6 1366 1603 695295108 695295340 3.700000e-46 196.0
39 TraesCS2D01G444700 chrUn 89.600 250 21 5 120 365 22610029 22609781 3.520000e-81 313.0
40 TraesCS2D01G444700 chrUn 88.492 252 20 7 120 367 22833614 22833368 3.550000e-76 296.0
41 TraesCS2D01G444700 chr7A 83.486 218 22 13 158 365 93914503 93914290 1.720000e-44 191.0
42 TraesCS2D01G444700 chr7A 81.106 217 30 11 157 365 93916011 93915798 3.750000e-36 163.0
43 TraesCS2D01G444700 chr7B 80.695 259 31 17 120 365 42166864 42167116 2.880000e-42 183.0
44 TraesCS2D01G444700 chr7B 77.273 154 19 11 116 265 533779430 533779571 5.030000e-10 76.8
45 TraesCS2D01G444700 chr7B 84.286 70 9 1 191 258 532025625 532025694 3.030000e-07 67.6
46 TraesCS2D01G444700 chr5B 83.410 217 14 11 4487 4681 418024572 418024788 1.040000e-41 182.0
47 TraesCS2D01G444700 chr5B 88.618 123 12 2 494 616 691604235 691604115 1.050000e-31 148.0
48 TraesCS2D01G444700 chr6D 96.364 110 3 1 3 112 450065327 450065219 3.730000e-41 180.0
49 TraesCS2D01G444700 chr6D 95.536 112 5 0 1 112 450069220 450069331 3.730000e-41 180.0
50 TraesCS2D01G444700 chr6D 88.000 125 11 3 494 616 58631177 58631299 1.360000e-30 145.0
51 TraesCS2D01G444700 chr6A 94.690 113 2 2 362 470 1253161 1253049 6.230000e-39 172.0
52 TraesCS2D01G444700 chr1B 90.244 123 11 1 494 616 120889342 120889221 4.850000e-35 159.0
53 TraesCS2D01G444700 chr1B 91.071 112 10 0 1 112 44586180 44586069 8.120000e-33 152.0
54 TraesCS2D01G444700 chr1D 89.516 124 11 2 494 616 371254113 371253991 6.280000e-34 156.0
55 TraesCS2D01G444700 chr1D 88.710 124 12 2 494 616 432390746 432390868 2.920000e-32 150.0
56 TraesCS2D01G444700 chr1D 93.814 97 6 0 124 220 5025071 5025167 3.780000e-31 147.0
57 TraesCS2D01G444700 chr3B 91.228 114 8 1 1 112 496977727 496977840 2.260000e-33 154.0
58 TraesCS2D01G444700 chr1A 87.805 123 13 2 494 615 147784021 147784142 4.890000e-30 143.0
59 TraesCS2D01G444700 chr6B 92.537 67 4 1 4618 4684 719335229 719335294 1.390000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G444700 chr2D 555867963 555872648 4685 False 3969.0 7511 100.0000 1 4686 2 chr2D.!!$F6 4685
1 TraesCS2D01G444700 chr2D 555852792 555853528 736 False 364.0 364 75.9040 1459 2195 1 chr2D.!!$F4 736
2 TraesCS2D01G444700 chr2D 555857968 555863315 5347 False 271.8 438 96.3104 1 470 5 chr2D.!!$F5 469
3 TraesCS2D01G444700 chr2D 593172015 593173463 1448 True 219.7 357 82.9135 1465 2689 2 chr2D.!!$R4 1224
4 TraesCS2D01G444700 chr2B 662650293 662654011 3718 False 895.2 2095 90.4606 494 3917 5 chr2B.!!$F4 3423
5 TraesCS2D01G444700 chr2B 662586603 662587343 740 False 363.0 363 76.0260 1459 2195 1 chr2B.!!$F3 736
6 TraesCS2D01G444700 chr2B 719452553 719453850 1297 True 236.0 348 83.9365 1463 2693 2 chr2B.!!$R4 1230
7 TraesCS2D01G444700 chr2A 695294149 695298457 4308 False 747.4 1463 87.5884 799 4043 5 chr2A.!!$F4 3244
8 TraesCS2D01G444700 chr2A 695161525 695162266 741 False 448.0 448 77.7930 1463 2195 1 chr2A.!!$F2 732
9 TraesCS2D01G444700 chr2A 695276855 695277590 735 False 348.0 348 75.5350 1459 2196 1 chr2A.!!$F3 737
10 TraesCS2D01G444700 chr2A 727924863 727925585 722 True 315.0 315 75.1660 1463 2201 1 chr2A.!!$R2 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.032813 AGGCCCATGCAAAGCTACAT 60.033 50.0 0.00 0.0 40.13 2.29 F
526 4556 0.036105 TCGTCGCTAGGTGGTCTACA 60.036 55.0 0.00 0.0 0.00 2.74 F
755 4786 0.176680 TTTGCAACAACGGGCATGTT 59.823 45.0 0.00 0.0 41.50 2.71 F
1422 5949 1.267121 TAGACAGTTGCTGGGAGGAC 58.733 55.0 1.08 0.0 35.51 3.85 F
2915 8153 0.106918 TTTTGGCACCTCCTTGTCGT 60.107 50.0 0.00 0.0 35.26 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 6371 0.526211 TCATCTGGTTCGTCGTCCTG 59.474 55.000 9.66 9.18 0.00 3.86 R
1750 6372 0.526662 GTCATCTGGTTCGTCGTCCT 59.473 55.000 9.66 0.00 0.00 3.85 R
1751 6373 0.526662 AGTCATCTGGTTCGTCGTCC 59.473 55.000 0.00 0.00 0.00 4.79 R
3164 8414 0.615331 TAGCCTTGCCACAGAGGAAG 59.385 55.000 0.00 0.00 41.22 3.46 R
4555 10141 1.000486 CAACGAGGAGGGGAGGAGA 60.000 63.158 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.037687 CCCTCAGGCCCATGCAAA 59.962 61.111 0.00 0.00 40.13 3.68
21 22 2.056223 CCCTCAGGCCCATGCAAAG 61.056 63.158 0.00 0.00 40.13 2.77
22 23 2.718073 CCTCAGGCCCATGCAAAGC 61.718 63.158 0.00 0.00 40.13 3.51
23 24 1.681327 CTCAGGCCCATGCAAAGCT 60.681 57.895 0.00 0.00 40.13 3.74
24 25 0.394762 CTCAGGCCCATGCAAAGCTA 60.395 55.000 0.00 0.00 40.13 3.32
25 26 0.680921 TCAGGCCCATGCAAAGCTAC 60.681 55.000 0.00 0.00 40.13 3.58
26 27 0.966875 CAGGCCCATGCAAAGCTACA 60.967 55.000 0.00 0.00 40.13 2.74
27 28 0.032813 AGGCCCATGCAAAGCTACAT 60.033 50.000 0.00 0.00 40.13 2.29
28 29 0.103572 GGCCCATGCAAAGCTACATG 59.896 55.000 14.36 14.36 42.67 3.21
29 30 0.529119 GCCCATGCAAAGCTACATGC 60.529 55.000 15.41 13.36 41.88 4.06
35 36 0.173935 GCAAAGCTACATGCATGGCA 59.826 50.000 29.41 16.14 45.94 4.92
37 38 0.452987 AAAGCTACATGCATGGCACG 59.547 50.000 29.41 15.28 43.04 5.34
38 39 1.996786 AAGCTACATGCATGGCACGC 61.997 55.000 29.41 22.91 43.04 5.34
41 42 1.646624 CTACATGCATGGCACGCACA 61.647 55.000 29.41 0.00 43.04 4.57
42 43 1.031029 TACATGCATGGCACGCACAT 61.031 50.000 29.41 4.26 43.04 3.21
43 44 1.876263 CATGCATGGCACGCACATG 60.876 57.895 19.40 1.82 43.04 3.21
65 2828 2.405892 GCGGCTCATGCGATTATTTT 57.594 45.000 0.00 0.00 40.82 1.82
69 2832 3.248363 CGGCTCATGCGATTATTTTCAGA 59.752 43.478 0.00 0.00 40.82 3.27
79 2842 6.866248 TGCGATTATTTTCAGAAGGGAAAAAC 59.134 34.615 5.33 0.00 46.39 2.43
81 2844 8.241367 GCGATTATTTTCAGAAGGGAAAAACTA 58.759 33.333 5.33 0.00 46.39 2.24
84 2847 9.929180 ATTATTTTCAGAAGGGAAAAACTAAGC 57.071 29.630 5.33 0.00 46.39 3.09
86 2849 8.706322 ATTTTCAGAAGGGAAAAACTAAGCTA 57.294 30.769 5.33 0.00 46.39 3.32
87 2850 8.528044 TTTTCAGAAGGGAAAAACTAAGCTAA 57.472 30.769 0.00 0.00 42.15 3.09
88 2851 7.745620 TTCAGAAGGGAAAAACTAAGCTAAG 57.254 36.000 0.00 0.00 0.00 2.18
89 2852 5.705905 TCAGAAGGGAAAAACTAAGCTAAGC 59.294 40.000 0.00 0.00 0.00 3.09
90 2853 5.473504 CAGAAGGGAAAAACTAAGCTAAGCA 59.526 40.000 0.00 0.00 0.00 3.91
91 2854 5.473846 AGAAGGGAAAAACTAAGCTAAGCAC 59.526 40.000 0.00 0.00 0.00 4.40
94 2857 5.009710 AGGGAAAAACTAAGCTAAGCACAAC 59.990 40.000 0.00 0.00 0.00 3.32
95 2858 4.909880 GGAAAAACTAAGCTAAGCACAACG 59.090 41.667 0.00 0.00 0.00 4.10
96 2859 5.277634 GGAAAAACTAAGCTAAGCACAACGA 60.278 40.000 0.00 0.00 0.00 3.85
97 2860 4.727235 AAACTAAGCTAAGCACAACGAC 57.273 40.909 0.00 0.00 0.00 4.34
100 2863 4.734917 ACTAAGCTAAGCACAACGACTAG 58.265 43.478 0.00 0.00 0.00 2.57
101 2864 3.936372 AAGCTAAGCACAACGACTAGA 57.064 42.857 0.00 0.00 0.00 2.43
102 2865 4.457834 AAGCTAAGCACAACGACTAGAT 57.542 40.909 0.00 0.00 0.00 1.98
103 2866 4.457834 AGCTAAGCACAACGACTAGATT 57.542 40.909 0.00 0.00 0.00 2.40
104 2867 5.578005 AGCTAAGCACAACGACTAGATTA 57.422 39.130 0.00 0.00 0.00 1.75
105 2868 5.583495 AGCTAAGCACAACGACTAGATTAG 58.417 41.667 0.00 0.00 0.00 1.73
106 2869 4.207429 GCTAAGCACAACGACTAGATTAGC 59.793 45.833 13.39 13.39 37.70 3.09
107 2870 4.457834 AAGCACAACGACTAGATTAGCT 57.542 40.909 0.00 0.00 0.00 3.32
108 2871 5.578005 AAGCACAACGACTAGATTAGCTA 57.422 39.130 0.00 0.00 0.00 3.32
145 4056 4.019771 TCTCTCTCTCAGCTCACTTCACTA 60.020 45.833 0.00 0.00 0.00 2.74
419 4413 2.509166 TCGGACACAGGTCAGACTAT 57.491 50.000 0.00 0.00 46.17 2.12
517 4547 2.935201 AGTACTTGTAGTCGTCGCTAGG 59.065 50.000 0.00 0.00 0.00 3.02
526 4556 0.036105 TCGTCGCTAGGTGGTCTACA 60.036 55.000 0.00 0.00 0.00 2.74
527 4557 1.022735 CGTCGCTAGGTGGTCTACAT 58.977 55.000 0.00 0.00 0.00 2.29
528 4558 1.268589 CGTCGCTAGGTGGTCTACATG 60.269 57.143 0.00 0.00 0.00 3.21
532 4562 2.033550 CGCTAGGTGGTCTACATGTCTC 59.966 54.545 0.00 0.00 0.00 3.36
607 4637 9.813446 AGATGAATAGATTGAAATTTTTCCTGC 57.187 29.630 0.00 0.00 36.36 4.85
610 4640 9.775854 TGAATAGATTGAAATTTTTCCTGCAAA 57.224 25.926 0.00 0.00 36.36 3.68
640 4670 4.094442 GGTTGGGTAGCAACGATTAAAGAG 59.906 45.833 0.00 0.00 33.65 2.85
645 4675 6.657541 TGGGTAGCAACGATTAAAGAGAAAAT 59.342 34.615 0.00 0.00 0.00 1.82
663 4693 3.467374 AATTTCCCACACGTTGCAAAT 57.533 38.095 0.00 0.00 0.00 2.32
677 4708 5.296780 ACGTTGCAAATGAATGTAGGGATAG 59.703 40.000 0.00 0.00 36.03 2.08
690 4721 0.828677 GGGATAGGGTTGCTACGTGT 59.171 55.000 0.00 0.00 0.00 4.49
694 4725 4.506758 GGATAGGGTTGCTACGTGTTTTA 58.493 43.478 0.00 0.00 0.00 1.52
701 4732 5.049267 GGGTTGCTACGTGTTTTATCTTCAA 60.049 40.000 0.00 0.00 0.00 2.69
715 4746 7.936496 TTTATCTTCAATGGTCTGCACATAA 57.064 32.000 0.00 0.00 0.00 1.90
721 4752 4.094739 TCAATGGTCTGCACATAATTCGTG 59.905 41.667 4.02 4.02 37.43 4.35
755 4786 0.176680 TTTGCAACAACGGGCATGTT 59.823 45.000 0.00 0.00 41.50 2.71
767 4798 3.041701 CATGTTGCAGGGCACGTT 58.958 55.556 0.00 0.00 38.71 3.99
826 4857 4.319177 AGTTGCAGATTTCAGTAGTGGTC 58.681 43.478 0.00 0.00 0.00 4.02
833 4918 9.143155 TGCAGATTTCAGTAGTGGTCTATATAA 57.857 33.333 0.00 0.00 0.00 0.98
881 4967 7.818446 AGTAGTAGGTTCGGAAAAGAATCTTTC 59.182 37.037 8.86 3.12 38.33 2.62
905 4991 1.590525 TGTCCGTGTGCGTGTCTTC 60.591 57.895 0.00 0.00 36.15 2.87
923 5009 2.080286 TCTTACTTGCCAGAGTTCGC 57.920 50.000 0.00 0.00 0.00 4.70
978 5064 3.923864 TGCGCGTGAGTTGTCCCT 61.924 61.111 8.43 0.00 0.00 4.20
1048 5135 2.354188 CAACAGCGTCGACGTCCA 60.354 61.111 35.48 0.00 42.22 4.02
1314 5447 3.628487 AGGTCGAGTGCACTAATCTACTC 59.372 47.826 21.73 3.67 36.95 2.59
1323 5456 7.261325 AGTGCACTAATCTACTCACTATGTTG 58.739 38.462 20.16 0.00 33.56 3.33
1324 5457 6.477033 GTGCACTAATCTACTCACTATGTTGG 59.523 42.308 10.32 0.00 0.00 3.77
1325 5458 6.379988 TGCACTAATCTACTCACTATGTTGGA 59.620 38.462 0.00 0.00 0.00 3.53
1326 5459 7.093509 TGCACTAATCTACTCACTATGTTGGAA 60.094 37.037 0.00 0.00 0.00 3.53
1327 5460 7.928706 GCACTAATCTACTCACTATGTTGGAAT 59.071 37.037 0.00 0.00 0.00 3.01
1328 5461 9.823647 CACTAATCTACTCACTATGTTGGAATT 57.176 33.333 0.00 0.00 0.00 2.17
1331 5464 8.511604 AATCTACTCACTATGTTGGAATTTGG 57.488 34.615 0.00 0.00 0.00 3.28
1332 5465 7.016153 TCTACTCACTATGTTGGAATTTGGT 57.984 36.000 0.00 0.00 0.00 3.67
1333 5466 8.141298 TCTACTCACTATGTTGGAATTTGGTA 57.859 34.615 0.00 0.00 0.00 3.25
1334 5467 8.038944 TCTACTCACTATGTTGGAATTTGGTAC 58.961 37.037 0.00 0.00 0.00 3.34
1335 5468 6.779860 ACTCACTATGTTGGAATTTGGTACT 58.220 36.000 0.00 0.00 0.00 2.73
1336 5469 7.913789 ACTCACTATGTTGGAATTTGGTACTA 58.086 34.615 0.00 0.00 0.00 1.82
1344 5477 7.913789 TGTTGGAATTTGGTACTACTGACTAT 58.086 34.615 0.00 0.00 0.00 2.12
1356 5489 7.280205 GGTACTACTGACTATGTTGGAATTTGG 59.720 40.741 0.00 0.00 0.00 3.28
1360 5493 6.779860 ACTGACTATGTTGGAATTTGGTAGT 58.220 36.000 0.00 0.00 0.00 2.73
1362 5495 7.822822 ACTGACTATGTTGGAATTTGGTAGTAC 59.177 37.037 0.00 0.00 0.00 2.73
1395 5921 3.759086 GTGGTTCAGAGGGATTTTTCTCC 59.241 47.826 0.00 0.00 34.31 3.71
1422 5949 1.267121 TAGACAGTTGCTGGGAGGAC 58.733 55.000 1.08 0.00 35.51 3.85
1429 5956 1.755380 GTTGCTGGGAGGACTATACGT 59.245 52.381 0.00 0.00 0.00 3.57
1433 5960 2.292845 GCTGGGAGGACTATACGTACAC 59.707 54.545 0.00 0.00 0.00 2.90
1457 5985 7.376866 CACTGTGTTTGTTTTCTCACATGATAC 59.623 37.037 0.00 0.00 39.51 2.24
1461 5989 6.073276 TGTTTGTTTTCTCACATGATACCTCG 60.073 38.462 0.00 0.00 0.00 4.63
1508 6036 5.930209 ATATATGGGGATGACCTTGTTGT 57.070 39.130 0.00 0.00 40.03 3.32
1619 6215 2.224597 GGGTCTAACGGTTTCTCCCAAA 60.225 50.000 16.47 0.00 34.20 3.28
1691 6293 2.227865 TGAAGTATGCGCCAAGTTTTCC 59.772 45.455 4.18 0.00 0.00 3.13
1742 6364 8.081633 GGATGTTGTCTTGATGATAGTAGAGAG 58.918 40.741 0.00 0.00 0.00 3.20
1745 6367 6.631971 TGTCTTGATGATAGTAGAGAGCAG 57.368 41.667 0.00 0.00 0.00 4.24
1749 6371 5.641783 TGATGATAGTAGAGAGCAGCATC 57.358 43.478 0.00 0.00 33.41 3.91
1750 6372 5.075493 TGATGATAGTAGAGAGCAGCATCA 58.925 41.667 0.00 0.00 38.68 3.07
1751 6373 5.183522 TGATGATAGTAGAGAGCAGCATCAG 59.816 44.000 0.00 0.00 36.82 2.90
1790 6412 2.638556 TCTCGTACTCTTGCAGCTTC 57.361 50.000 0.00 0.00 0.00 3.86
1831 6453 0.306228 TTGACATGTGTGTTTCCGCG 59.694 50.000 1.15 0.00 39.09 6.46
1924 6546 3.675502 CGACTCTGTGAGATGCTTGACAT 60.676 47.826 1.25 0.00 43.54 3.06
1955 6577 2.747855 CTGCCGGGCCAAGAAGTC 60.748 66.667 17.97 0.00 0.00 3.01
1988 6610 3.429960 GGGTTGAGTGGATACGTAGTTCC 60.430 52.174 8.08 8.08 37.78 3.62
2013 6635 2.280524 CGCACCTCGGGTTTGACA 60.281 61.111 0.00 0.00 31.02 3.58
2024 6646 3.886505 TCGGGTTTGACAGCAAAATAACT 59.113 39.130 0.00 0.00 44.91 2.24
2027 6649 5.051106 CGGGTTTGACAGCAAAATAACTTTG 60.051 40.000 0.00 0.00 44.91 2.77
2037 6659 6.152661 CAGCAAAATAACTTTGGGTCCAGATA 59.847 38.462 0.00 0.00 44.03 1.98
2038 6660 6.378280 AGCAAAATAACTTTGGGTCCAGATAG 59.622 38.462 0.00 0.00 44.03 2.08
2357 7413 3.264193 TCAAGTGCATGGAGACCTTATGT 59.736 43.478 0.00 0.00 0.00 2.29
2408 7464 5.628797 TTCAGTTGATATGCCCTGATACA 57.371 39.130 0.00 0.00 34.19 2.29
2686 7742 1.352156 CGGCAGCGACAGGTAGAAAC 61.352 60.000 0.00 0.00 0.00 2.78
2763 7826 4.099419 TCTCTAGTGCACAACTTTGACTGA 59.901 41.667 21.04 0.36 40.56 3.41
2775 7838 9.520204 CACAACTTTGACTGATTTTTCACTTAT 57.480 29.630 0.00 0.00 0.00 1.73
2817 8034 9.793245 GTAAAATGCATTTGCTATACTACTACG 57.207 33.333 24.74 0.00 42.66 3.51
2832 8049 3.096489 ACTACGAAACAACTTGCGGTA 57.904 42.857 0.00 0.00 0.00 4.02
2890 8128 9.859152 TCTATCATAGATCTTTGAAGAGTCTCA 57.141 33.333 18.11 2.95 38.66 3.27
2915 8153 0.106918 TTTTGGCACCTCCTTGTCGT 60.107 50.000 0.00 0.00 35.26 4.34
2942 8180 1.129058 CCCTACCCGTCTAATTGGCT 58.871 55.000 0.00 0.00 0.00 4.75
2951 8189 2.802816 CGTCTAATTGGCTGCTGGATAC 59.197 50.000 0.00 0.00 0.00 2.24
2971 8214 8.620533 GGATACAATTTCAAGTTACTGAATGC 57.379 34.615 0.00 0.00 35.31 3.56
2976 8219 2.972625 TCAAGTTACTGAATGCCTCCG 58.027 47.619 0.00 0.00 0.00 4.63
2981 8224 2.429610 GTTACTGAATGCCTCCGACCTA 59.570 50.000 0.00 0.00 0.00 3.08
3001 8244 6.969043 ACCTATTGTCCTCCATTTTATGTCA 58.031 36.000 0.00 0.00 0.00 3.58
3009 8259 2.016318 CCATTTTATGTCAGCAGGCGA 58.984 47.619 0.00 0.00 0.00 5.54
3043 8293 1.918253 CAAGGGAGATGGTGGAGGG 59.082 63.158 0.00 0.00 0.00 4.30
3116 8366 3.057033 GCAGAATGACCATCAGCAAAACT 60.057 43.478 0.00 0.00 39.69 2.66
3164 8414 0.242017 GTTGTGGTCAGGCATTCTGC 59.758 55.000 0.00 0.00 43.06 4.26
3170 8420 1.377536 GTCAGGCATTCTGCTTCCTC 58.622 55.000 0.00 0.00 44.28 3.71
3239 8489 1.889829 CGTCTGAGATATCCAGGGTCC 59.110 57.143 16.48 6.35 32.73 4.46
3244 8494 5.039645 TCTGAGATATCCAGGGTCCTTTTT 58.960 41.667 16.48 0.00 32.73 1.94
3246 8496 4.540099 TGAGATATCCAGGGTCCTTTTTGT 59.460 41.667 0.00 0.00 0.00 2.83
3247 8497 5.117406 AGATATCCAGGGTCCTTTTTGTC 57.883 43.478 0.00 0.00 0.00 3.18
3249 8499 5.970640 AGATATCCAGGGTCCTTTTTGTCTA 59.029 40.000 0.00 0.00 0.00 2.59
3287 8537 9.265901 GATCTCAAGCTTACTTATCTTTATGCA 57.734 33.333 0.00 0.00 33.74 3.96
3409 8664 1.878070 CATGCGAGCTCAAAGCCAA 59.122 52.632 15.40 0.00 43.77 4.52
3442 8697 0.525761 CCGTGAAATGCCCGAAATGT 59.474 50.000 0.00 0.00 0.00 2.71
3527 8793 2.440409 CACTGGTTTGCCTCTATTGCT 58.560 47.619 0.00 0.00 35.27 3.91
3541 8807 6.352516 CCTCTATTGCTTCTAACCAATGTCT 58.647 40.000 0.00 0.00 33.93 3.41
3574 8840 5.699458 CCAGGGCGACGATAAGTATATTTTT 59.301 40.000 0.00 0.00 0.00 1.94
3661 8927 2.763215 GAGCATTGGGGGTCACCA 59.237 61.111 0.00 0.00 42.91 4.17
3687 8953 2.419574 GCGTGGGGATAAAGTTCTAGCA 60.420 50.000 0.00 0.00 0.00 3.49
3714 8980 8.522830 TCGATCATATATGTGCTCTCATTGTTA 58.477 33.333 12.42 0.00 0.00 2.41
3732 8998 9.979578 TCATTGTTACAGTTTTGCAGATTAAAT 57.020 25.926 0.00 0.00 0.00 1.40
3740 9006 9.816354 ACAGTTTTGCAGATTAAATTACAGTTT 57.184 25.926 0.00 0.00 0.00 2.66
3796 9163 8.150945 AGTTGGTACATGTTGTATATGAGATCC 58.849 37.037 2.30 0.00 39.30 3.36
3878 9245 1.339610 TGTGGCAAAAGCTTATGCGTT 59.660 42.857 0.00 0.00 43.47 4.84
3947 9533 1.066071 GTGTCCAGGGGAGCTAAAGTC 60.066 57.143 0.00 0.00 29.39 3.01
3952 9538 1.630878 CAGGGGAGCTAAAGTCCTTGT 59.369 52.381 0.00 0.00 34.16 3.16
3953 9539 1.909986 AGGGGAGCTAAAGTCCTTGTC 59.090 52.381 0.00 0.00 34.16 3.18
3954 9540 1.065345 GGGGAGCTAAAGTCCTTGTCC 60.065 57.143 0.00 0.00 34.16 4.02
3956 9542 2.306219 GGGAGCTAAAGTCCTTGTCCTT 59.694 50.000 0.00 0.00 34.16 3.36
3957 9543 3.339141 GGAGCTAAAGTCCTTGTCCTTG 58.661 50.000 0.00 0.00 0.00 3.61
3968 9554 4.633565 GTCCTTGTCCTTGATAGCAGAAAG 59.366 45.833 0.00 0.00 0.00 2.62
4006 9592 8.885494 TGCTTAAAAAGTGCACTAATGAAATT 57.115 26.923 22.01 5.76 41.28 1.82
4007 9593 9.323985 TGCTTAAAAAGTGCACTAATGAAATTT 57.676 25.926 22.01 12.10 37.87 1.82
4043 9629 6.196910 CGTGAATGTTATGTAAACATGCATGG 59.803 38.462 29.41 12.50 45.16 3.66
4044 9630 6.476380 GTGAATGTTATGTAAACATGCATGGG 59.524 38.462 29.41 7.08 45.16 4.00
4045 9631 4.383850 TGTTATGTAAACATGCATGGGC 57.616 40.909 29.41 16.22 37.15 5.36
4046 9632 3.181492 TGTTATGTAAACATGCATGGGCG 60.181 43.478 29.41 5.90 45.35 6.13
4047 9633 1.473258 ATGTAAACATGCATGGGCGT 58.527 45.000 29.41 14.53 45.35 5.68
4048 9634 0.808125 TGTAAACATGCATGGGCGTC 59.192 50.000 29.41 15.67 45.35 5.19
4049 9635 0.248054 GTAAACATGCATGGGCGTCG 60.248 55.000 29.41 3.95 45.35 5.12
4050 9636 1.987704 TAAACATGCATGGGCGTCGC 61.988 55.000 29.41 9.22 45.35 5.19
4474 10060 4.862823 CCGGGTCCTCTCCCTCCC 62.863 77.778 0.00 0.00 44.95 4.30
4475 10061 4.862823 CGGGTCCTCTCCCTCCCC 62.863 77.778 0.25 0.00 44.95 4.81
4476 10062 4.500826 GGGTCCTCTCCCTCCCCC 62.501 77.778 0.00 0.00 43.85 5.40
4477 10063 3.369388 GGTCCTCTCCCTCCCCCT 61.369 72.222 0.00 0.00 0.00 4.79
4478 10064 2.788589 GTCCTCTCCCTCCCCCTT 59.211 66.667 0.00 0.00 0.00 3.95
4479 10065 1.383386 GTCCTCTCCCTCCCCCTTC 60.383 68.421 0.00 0.00 0.00 3.46
4480 10066 2.040359 CCTCTCCCTCCCCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
4481 10067 2.040359 CTCTCCCTCCCCCTTCCC 60.040 72.222 0.00 0.00 0.00 3.97
4482 10068 2.879490 TCTCCCTCCCCCTTCCCA 60.879 66.667 0.00 0.00 0.00 4.37
4483 10069 2.272170 TCTCCCTCCCCCTTCCCAT 61.272 63.158 0.00 0.00 0.00 4.00
4484 10070 1.772156 CTCCCTCCCCCTTCCCATC 60.772 68.421 0.00 0.00 0.00 3.51
4485 10071 2.272170 TCCCTCCCCCTTCCCATCT 61.272 63.158 0.00 0.00 0.00 2.90
4486 10072 1.772156 CCCTCCCCCTTCCCATCTC 60.772 68.421 0.00 0.00 0.00 2.75
4487 10073 2.143419 CCTCCCCCTTCCCATCTCG 61.143 68.421 0.00 0.00 0.00 4.04
4488 10074 2.768344 TCCCCCTTCCCATCTCGC 60.768 66.667 0.00 0.00 0.00 5.03
4489 10075 3.878667 CCCCCTTCCCATCTCGCC 61.879 72.222 0.00 0.00 0.00 5.54
4490 10076 4.241555 CCCCTTCCCATCTCGCCG 62.242 72.222 0.00 0.00 0.00 6.46
4491 10077 4.918201 CCCTTCCCATCTCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
4492 10078 4.918201 CCTTCCCATCTCGCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
4512 10098 4.389576 CAAAGCCCGAGCGTGCAC 62.390 66.667 6.82 6.82 46.67 4.57
4518 10104 4.662961 CCGAGCGTGCACCAGTGA 62.663 66.667 12.15 0.00 0.00 3.41
4519 10105 3.108289 CGAGCGTGCACCAGTGAG 61.108 66.667 12.15 0.00 0.00 3.51
4520 10106 2.740055 GAGCGTGCACCAGTGAGG 60.740 66.667 12.15 0.00 45.67 3.86
4521 10107 4.320456 AGCGTGCACCAGTGAGGG 62.320 66.667 12.15 0.00 43.89 4.30
4558 10144 2.671682 GGCAACCTCCACCCTCTC 59.328 66.667 0.00 0.00 0.00 3.20
4559 10145 2.671682 GCAACCTCCACCCTCTCC 59.328 66.667 0.00 0.00 0.00 3.71
4560 10146 1.920835 GCAACCTCCACCCTCTCCT 60.921 63.158 0.00 0.00 0.00 3.69
4561 10147 1.904990 GCAACCTCCACCCTCTCCTC 61.905 65.000 0.00 0.00 0.00 3.71
4562 10148 1.081277 AACCTCCACCCTCTCCTCC 59.919 63.158 0.00 0.00 0.00 4.30
4563 10149 2.041405 CCTCCACCCTCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
4564 10150 2.041405 CTCCACCCTCTCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
4565 10151 2.540910 TCCACCCTCTCCTCCCCT 60.541 66.667 0.00 0.00 0.00 4.79
4566 10152 2.041405 CCACCCTCTCCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
4567 10153 2.041405 CACCCTCTCCTCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
4568 10154 2.204705 ACCCTCTCCTCCCCTCCT 60.205 66.667 0.00 0.00 0.00 3.69
4569 10155 2.329399 ACCCTCTCCTCCCCTCCTC 61.329 68.421 0.00 0.00 0.00 3.71
4570 10156 2.197324 CCTCTCCTCCCCTCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
4571 10157 2.695970 CCTCTCCTCCCCTCCTCGT 61.696 68.421 0.00 0.00 0.00 4.18
4572 10158 1.308326 CTCTCCTCCCCTCCTCGTT 59.692 63.158 0.00 0.00 0.00 3.85
4573 10159 1.000486 TCTCCTCCCCTCCTCGTTG 60.000 63.158 0.00 0.00 0.00 4.10
4574 10160 2.038975 TCCTCCCCTCCTCGTTGG 59.961 66.667 0.00 0.00 37.10 3.77
4575 10161 3.083997 CCTCCCCTCCTCGTTGGG 61.084 72.222 0.00 0.00 42.98 4.12
4602 10188 3.120385 CGCGCACCAGATCTGCAA 61.120 61.111 17.76 0.00 34.00 4.08
4603 10189 2.789917 GCGCACCAGATCTGCAAG 59.210 61.111 17.76 9.73 34.00 4.01
4604 10190 2.758089 GCGCACCAGATCTGCAAGG 61.758 63.158 17.76 6.23 34.00 3.61
4605 10191 2.758089 CGCACCAGATCTGCAAGGC 61.758 63.158 17.76 14.90 34.00 4.35
4606 10192 2.413142 GCACCAGATCTGCAAGGCC 61.413 63.158 17.76 0.00 34.56 5.19
4607 10193 1.751927 CACCAGATCTGCAAGGCCC 60.752 63.158 17.76 0.00 0.00 5.80
4608 10194 2.515523 CCAGATCTGCAAGGCCCG 60.516 66.667 17.76 0.00 0.00 6.13
4609 10195 2.515523 CAGATCTGCAAGGCCCGG 60.516 66.667 10.38 0.00 0.00 5.73
4610 10196 3.011517 AGATCTGCAAGGCCCGGT 61.012 61.111 0.00 0.00 0.00 5.28
4611 10197 2.514824 GATCTGCAAGGCCCGGTC 60.515 66.667 0.00 0.00 0.00 4.79
4612 10198 4.473520 ATCTGCAAGGCCCGGTCG 62.474 66.667 0.00 0.00 0.00 4.79
4673 10259 4.803426 GCGTGCGGTGGAGAGGAG 62.803 72.222 0.00 0.00 0.00 3.69
4674 10260 4.135153 CGTGCGGTGGAGAGGAGG 62.135 72.222 0.00 0.00 0.00 4.30
4675 10261 4.459089 GTGCGGTGGAGAGGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
4679 10265 3.775654 GGTGGAGAGGAGGCGGTG 61.776 72.222 0.00 0.00 0.00 4.94
4680 10266 2.997897 GTGGAGAGGAGGCGGTGT 60.998 66.667 0.00 0.00 0.00 4.16
4681 10267 2.680352 TGGAGAGGAGGCGGTGTC 60.680 66.667 0.00 0.00 0.00 3.67
4682 10268 3.827898 GGAGAGGAGGCGGTGTCG 61.828 72.222 0.00 0.00 39.81 4.35
4683 10269 3.827898 GAGAGGAGGCGGTGTCGG 61.828 72.222 0.00 0.00 36.79 4.79
4684 10270 4.361971 AGAGGAGGCGGTGTCGGA 62.362 66.667 0.00 0.00 36.79 4.55
4685 10271 4.131088 GAGGAGGCGGTGTCGGAC 62.131 72.222 0.00 0.00 36.79 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.718073 GCTTTGCATGGGCCTGAGG 61.718 63.158 4.53 0.00 40.13 3.86
6 7 0.680921 GTAGCTTTGCATGGGCCTGA 60.681 55.000 4.53 0.00 40.13 3.86
7 8 0.966875 TGTAGCTTTGCATGGGCCTG 60.967 55.000 4.53 1.41 40.13 4.85
8 9 0.032813 ATGTAGCTTTGCATGGGCCT 60.033 50.000 4.53 0.00 40.13 5.19
9 10 0.103572 CATGTAGCTTTGCATGGGCC 59.896 55.000 14.17 0.00 38.90 5.80
10 11 0.529119 GCATGTAGCTTTGCATGGGC 60.529 55.000 19.92 8.84 41.82 5.36
11 12 0.818938 TGCATGTAGCTTTGCATGGG 59.181 50.000 19.92 4.24 43.54 4.00
16 17 0.173935 TGCCATGCATGTAGCTTTGC 59.826 50.000 24.58 18.26 45.94 3.68
17 18 1.796253 CGTGCCATGCATGTAGCTTTG 60.796 52.381 24.58 9.02 45.94 2.77
18 19 0.452987 CGTGCCATGCATGTAGCTTT 59.547 50.000 24.58 0.00 45.94 3.51
19 20 1.996786 GCGTGCCATGCATGTAGCTT 61.997 55.000 24.58 0.00 46.10 3.74
20 21 2.475466 GCGTGCCATGCATGTAGCT 61.475 57.895 24.58 0.00 46.10 3.32
21 22 2.025156 GCGTGCCATGCATGTAGC 59.975 61.111 24.58 20.96 46.10 3.58
22 23 1.063006 GTGCGTGCCATGCATGTAG 59.937 57.895 24.58 11.90 46.10 2.74
23 24 1.031029 ATGTGCGTGCCATGCATGTA 61.031 50.000 24.58 11.07 46.10 2.29
24 25 2.344981 ATGTGCGTGCCATGCATGT 61.345 52.632 24.58 4.02 46.10 3.21
25 26 1.876263 CATGTGCGTGCCATGCATG 60.876 57.895 20.19 20.19 46.98 4.06
26 27 2.492560 CATGTGCGTGCCATGCAT 59.507 55.556 15.69 0.00 42.74 3.96
46 47 2.286950 TGAAAATAATCGCATGAGCCGC 60.287 45.455 0.00 0.00 37.52 6.53
47 48 3.248363 TCTGAAAATAATCGCATGAGCCG 59.752 43.478 0.00 0.00 37.52 5.52
49 50 5.210715 CCTTCTGAAAATAATCGCATGAGC 58.789 41.667 0.00 0.00 37.42 4.26
50 51 5.528690 TCCCTTCTGAAAATAATCGCATGAG 59.471 40.000 0.00 0.00 0.00 2.90
51 52 5.436175 TCCCTTCTGAAAATAATCGCATGA 58.564 37.500 0.00 0.00 0.00 3.07
52 53 5.756195 TCCCTTCTGAAAATAATCGCATG 57.244 39.130 0.00 0.00 0.00 4.06
54 55 6.582677 TTTTCCCTTCTGAAAATAATCGCA 57.417 33.333 0.00 0.00 38.84 5.10
60 61 8.706322 AGCTTAGTTTTTCCCTTCTGAAAATA 57.294 30.769 0.00 0.00 42.16 1.40
61 62 7.603180 AGCTTAGTTTTTCCCTTCTGAAAAT 57.397 32.000 0.00 0.00 42.16 1.82
65 2828 5.705905 GCTTAGCTTAGTTTTTCCCTTCTGA 59.294 40.000 1.11 0.00 0.00 3.27
69 2832 5.137551 TGTGCTTAGCTTAGTTTTTCCCTT 58.862 37.500 5.60 0.00 0.00 3.95
79 2842 4.982999 TCTAGTCGTTGTGCTTAGCTTAG 58.017 43.478 5.60 0.00 0.00 2.18
81 2844 3.936372 TCTAGTCGTTGTGCTTAGCTT 57.064 42.857 5.60 0.00 0.00 3.74
82 2845 4.457834 AATCTAGTCGTTGTGCTTAGCT 57.542 40.909 5.60 0.00 0.00 3.32
83 2846 4.207429 GCTAATCTAGTCGTTGTGCTTAGC 59.793 45.833 0.00 0.00 34.85 3.09
84 2847 5.583495 AGCTAATCTAGTCGTTGTGCTTAG 58.417 41.667 0.00 0.00 0.00 2.18
86 2849 4.457834 AGCTAATCTAGTCGTTGTGCTT 57.542 40.909 0.00 0.00 0.00 3.91
87 2850 5.105877 TGTTAGCTAATCTAGTCGTTGTGCT 60.106 40.000 9.88 0.00 0.00 4.40
88 2851 5.004535 GTGTTAGCTAATCTAGTCGTTGTGC 59.995 44.000 9.88 0.00 0.00 4.57
89 2852 6.033619 GTGTGTTAGCTAATCTAGTCGTTGTG 59.966 42.308 9.88 0.00 0.00 3.33
90 2853 6.091437 GTGTGTTAGCTAATCTAGTCGTTGT 58.909 40.000 9.88 0.00 0.00 3.32
91 2854 6.033619 GTGTGTGTTAGCTAATCTAGTCGTTG 59.966 42.308 9.88 0.00 0.00 4.10
94 2857 5.512082 GTGTGTGTGTTAGCTAATCTAGTCG 59.488 44.000 9.88 0.00 0.00 4.18
95 2858 5.805994 GGTGTGTGTGTTAGCTAATCTAGTC 59.194 44.000 9.88 0.00 0.00 2.59
96 2859 5.480772 AGGTGTGTGTGTTAGCTAATCTAGT 59.519 40.000 9.88 0.00 0.00 2.57
97 2860 5.967088 AGGTGTGTGTGTTAGCTAATCTAG 58.033 41.667 9.88 0.00 0.00 2.43
100 2863 4.822026 AGAGGTGTGTGTGTTAGCTAATC 58.178 43.478 9.88 7.03 0.00 1.75
101 2864 4.528596 AGAGAGGTGTGTGTGTTAGCTAAT 59.471 41.667 9.88 0.00 0.00 1.73
102 2865 3.895656 AGAGAGGTGTGTGTGTTAGCTAA 59.104 43.478 0.86 0.86 0.00 3.09
103 2866 3.497332 AGAGAGGTGTGTGTGTTAGCTA 58.503 45.455 0.00 0.00 0.00 3.32
104 2867 2.297597 GAGAGAGGTGTGTGTGTTAGCT 59.702 50.000 0.00 0.00 0.00 3.32
105 2868 2.297597 AGAGAGAGGTGTGTGTGTTAGC 59.702 50.000 0.00 0.00 0.00 3.09
106 2869 3.823873 AGAGAGAGAGGTGTGTGTGTTAG 59.176 47.826 0.00 0.00 0.00 2.34
107 2870 3.821600 GAGAGAGAGAGGTGTGTGTGTTA 59.178 47.826 0.00 0.00 0.00 2.41
108 2871 2.625790 GAGAGAGAGAGGTGTGTGTGTT 59.374 50.000 0.00 0.00 0.00 3.32
145 4056 2.160721 TCCTCTTCGGTTAGAGCCAT 57.839 50.000 0.00 0.00 40.28 4.40
248 4159 1.202582 GCTAGAGTTCGTGCTTGAGGA 59.797 52.381 0.00 0.00 0.00 3.71
369 4363 2.357323 GTGGCTAGGTCGTAGGTAGTTC 59.643 54.545 1.94 0.00 0.00 3.01
497 4527 2.675348 ACCTAGCGACGACTACAAGTAC 59.325 50.000 0.00 0.00 0.00 2.73
517 4547 3.784701 ACATCGAGACATGTAGACCAC 57.215 47.619 0.00 0.00 35.10 4.16
619 4649 5.155278 TCTCTTTAATCGTTGCTACCCAA 57.845 39.130 0.00 0.00 0.00 4.12
620 4650 4.811969 TCTCTTTAATCGTTGCTACCCA 57.188 40.909 0.00 0.00 0.00 4.51
621 4651 6.490566 TTTTCTCTTTAATCGTTGCTACCC 57.509 37.500 0.00 0.00 0.00 3.69
622 4652 8.965986 AAATTTTCTCTTTAATCGTTGCTACC 57.034 30.769 0.00 0.00 0.00 3.18
623 4653 9.062674 GGAAATTTTCTCTTTAATCGTTGCTAC 57.937 33.333 8.93 0.00 0.00 3.58
629 4659 7.368059 GTGTGGGAAATTTTCTCTTTAATCGT 58.632 34.615 10.27 0.00 0.00 3.73
640 4670 2.815478 TGCAACGTGTGGGAAATTTTC 58.185 42.857 0.24 0.24 0.00 2.29
645 4675 1.751351 TCATTTGCAACGTGTGGGAAA 59.249 42.857 0.00 0.00 0.00 3.13
663 4693 3.393687 AGCAACCCTATCCCTACATTCA 58.606 45.455 0.00 0.00 0.00 2.57
677 4708 4.453136 TGAAGATAAAACACGTAGCAACCC 59.547 41.667 0.00 0.00 0.00 4.11
690 4721 6.839124 ATGTGCAGACCATTGAAGATAAAA 57.161 33.333 0.00 0.00 0.00 1.52
694 4725 6.238566 CGAATTATGTGCAGACCATTGAAGAT 60.239 38.462 0.00 0.00 0.00 2.40
701 4732 3.609853 ACACGAATTATGTGCAGACCAT 58.390 40.909 9.57 0.00 41.03 3.55
715 4746 1.370414 GCGCAAGTGCAACACGAAT 60.370 52.632 0.30 0.00 41.43 3.34
774 4805 1.909376 ATTCAACCGATCAGACGTCG 58.091 50.000 10.46 5.48 38.75 5.12
782 4813 9.869844 CAACTTGATATTTCTATTCAACCGATC 57.130 33.333 0.00 0.00 0.00 3.69
783 4814 8.345565 GCAACTTGATATTTCTATTCAACCGAT 58.654 33.333 0.00 0.00 0.00 4.18
784 4815 7.335673 TGCAACTTGATATTTCTATTCAACCGA 59.664 33.333 0.00 0.00 0.00 4.69
785 4816 7.471721 TGCAACTTGATATTTCTATTCAACCG 58.528 34.615 0.00 0.00 0.00 4.44
786 4817 8.677300 TCTGCAACTTGATATTTCTATTCAACC 58.323 33.333 0.00 0.00 0.00 3.77
834 4919 9.569122 ACTACTCCTGAATAGCAAAAAGTAAAA 57.431 29.630 0.00 0.00 0.00 1.52
836 4921 9.871238 CTACTACTCCTGAATAGCAAAAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
839 4924 7.331791 ACCTACTACTCCTGAATAGCAAAAAG 58.668 38.462 0.00 0.00 0.00 2.27
858 4944 5.638234 CGAAAGATTCTTTTCCGAACCTACT 59.362 40.000 12.73 0.00 34.34 2.57
881 4967 4.354212 CGCACACGGACACAAGCG 62.354 66.667 0.00 0.00 39.17 4.68
905 4991 1.795768 TGCGAACTCTGGCAAGTAAG 58.204 50.000 3.37 2.89 35.98 2.34
923 5009 2.222886 ACGATCACTCCTACTCCGATG 58.777 52.381 0.00 0.00 0.00 3.84
1057 5156 1.599797 GGTTGGGTTCCAGGACGTG 60.600 63.158 0.00 0.00 33.81 4.49
1058 5157 2.073716 TGGTTGGGTTCCAGGACGT 61.074 57.895 0.00 0.00 33.81 4.34
1059 5158 1.599797 GTGGTTGGGTTCCAGGACG 60.600 63.158 0.00 0.00 35.49 4.79
1060 5159 1.599797 CGTGGTTGGGTTCCAGGAC 60.600 63.158 0.00 0.00 41.56 3.85
1061 5160 1.346479 TTCGTGGTTGGGTTCCAGGA 61.346 55.000 3.71 3.71 44.52 3.86
1062 5161 1.149627 TTCGTGGTTGGGTTCCAGG 59.850 57.895 0.00 0.00 40.74 4.45
1314 5447 7.822334 TCAGTAGTACCAAATTCCAACATAGTG 59.178 37.037 0.00 0.00 0.00 2.74
1323 5456 7.280205 CCAACATAGTCAGTAGTACCAAATTCC 59.720 40.741 0.00 0.00 0.00 3.01
1324 5457 8.038944 TCCAACATAGTCAGTAGTACCAAATTC 58.961 37.037 0.00 0.00 0.00 2.17
1325 5458 7.913789 TCCAACATAGTCAGTAGTACCAAATT 58.086 34.615 0.00 0.00 0.00 1.82
1326 5459 7.490657 TCCAACATAGTCAGTAGTACCAAAT 57.509 36.000 0.00 0.00 0.00 2.32
1327 5460 6.921486 TCCAACATAGTCAGTAGTACCAAA 57.079 37.500 0.00 0.00 0.00 3.28
1328 5461 6.921486 TTCCAACATAGTCAGTAGTACCAA 57.079 37.500 0.00 0.00 0.00 3.67
1329 5462 7.490657 AATTCCAACATAGTCAGTAGTACCA 57.509 36.000 0.00 0.00 0.00 3.25
1330 5463 7.280205 CCAAATTCCAACATAGTCAGTAGTACC 59.720 40.741 0.00 0.00 0.00 3.34
1331 5464 7.822822 ACCAAATTCCAACATAGTCAGTAGTAC 59.177 37.037 0.00 0.00 0.00 2.73
1332 5465 7.913789 ACCAAATTCCAACATAGTCAGTAGTA 58.086 34.615 0.00 0.00 0.00 1.82
1333 5466 6.779860 ACCAAATTCCAACATAGTCAGTAGT 58.220 36.000 0.00 0.00 0.00 2.73
1334 5467 8.041323 ACTACCAAATTCCAACATAGTCAGTAG 58.959 37.037 0.00 0.00 0.00 2.57
1335 5468 7.913789 ACTACCAAATTCCAACATAGTCAGTA 58.086 34.615 0.00 0.00 0.00 2.74
1336 5469 6.779860 ACTACCAAATTCCAACATAGTCAGT 58.220 36.000 0.00 0.00 0.00 3.41
1360 5493 8.117956 TCCCTCTGAACCACTTAATAAGTAGTA 58.882 37.037 5.23 0.00 40.46 1.82
1362 5495 7.419711 TCCCTCTGAACCACTTAATAAGTAG 57.580 40.000 5.23 0.99 40.46 2.57
1395 5921 3.499918 CCCAGCAACTGTCTAAAACTGAG 59.500 47.826 0.00 0.00 0.00 3.35
1422 5949 8.068893 AGAAAACAAACACAGTGTACGTATAG 57.931 34.615 6.63 0.00 0.00 1.31
1429 5956 6.372937 TCATGTGAGAAAACAAACACAGTGTA 59.627 34.615 6.63 0.00 44.39 2.90
1433 5960 6.857964 GGTATCATGTGAGAAAACAAACACAG 59.142 38.462 0.00 0.00 44.39 3.66
1461 5989 1.226974 CAATGCCATCAGCTGCAGC 60.227 57.895 31.53 31.53 44.23 5.25
1508 6036 1.472480 GCCCTGCTTTGCTTTCGAATA 59.528 47.619 0.00 0.00 0.00 1.75
1558 6090 5.851720 TGAGGAGATGAAATAGCACTGATC 58.148 41.667 0.00 0.00 0.00 2.92
1703 6305 3.592059 ACAACATCCATCTTTTGCATGC 58.408 40.909 11.82 11.82 0.00 4.06
1742 6364 1.446099 TTCGTCGTCCTGATGCTGC 60.446 57.895 0.00 0.00 33.35 5.25
1745 6367 1.078759 CTGGTTCGTCGTCCTGATGC 61.079 60.000 9.66 0.00 33.35 3.91
1749 6371 0.526211 TCATCTGGTTCGTCGTCCTG 59.474 55.000 9.66 9.18 0.00 3.86
1750 6372 0.526662 GTCATCTGGTTCGTCGTCCT 59.473 55.000 9.66 0.00 0.00 3.85
1751 6373 0.526662 AGTCATCTGGTTCGTCGTCC 59.473 55.000 0.00 0.00 0.00 4.79
1790 6412 4.351054 AAAGGGGGCAGGTGCTCG 62.351 66.667 1.26 0.00 44.07 5.03
1831 6453 4.323868 GGGGATCTTTGCTAGGATATGACC 60.324 50.000 0.00 0.00 0.00 4.02
1946 6568 4.127171 CCCATTGGTATACGACTTCTTGG 58.873 47.826 1.20 0.00 0.00 3.61
2012 6634 4.280677 TCTGGACCCAAAGTTATTTTGCTG 59.719 41.667 0.00 0.00 43.90 4.41
2013 6635 4.479158 TCTGGACCCAAAGTTATTTTGCT 58.521 39.130 0.00 0.00 43.90 3.91
2024 6646 3.028850 CGTAGGACTATCTGGACCCAAA 58.971 50.000 0.00 0.00 0.00 3.28
2027 6649 0.960286 GCGTAGGACTATCTGGACCC 59.040 60.000 0.00 0.00 0.00 4.46
2357 7413 4.574674 ACCTTCCTTCACATGCATCTTA 57.425 40.909 0.00 0.00 0.00 2.10
2408 7464 2.040278 TGGAATAGGAGCAGTGCACTTT 59.960 45.455 18.94 8.67 0.00 2.66
2686 7742 3.491792 GGAAAGAGGGAGTAAGAGATGCG 60.492 52.174 0.00 0.00 0.00 4.73
2799 7941 9.084164 AGTTGTTTCGTAGTAGTATAGCAAATG 57.916 33.333 0.00 0.00 0.00 2.32
2800 7942 9.649167 AAGTTGTTTCGTAGTAGTATAGCAAAT 57.351 29.630 0.00 0.00 0.00 2.32
2801 7943 8.918658 CAAGTTGTTTCGTAGTAGTATAGCAAA 58.081 33.333 0.00 0.00 0.00 3.68
2805 7947 6.195983 CCGCAAGTTGTTTCGTAGTAGTATAG 59.804 42.308 4.48 0.00 0.00 1.31
2817 8034 4.156008 AGGATTCATACCGCAAGTTGTTTC 59.844 41.667 4.48 0.00 0.00 2.78
2904 8142 2.361438 GGGTAGTGATACGACAAGGAGG 59.639 54.545 0.00 0.00 0.00 4.30
2915 8153 5.589367 ATTAGACGGGTAGGGTAGTGATA 57.411 43.478 0.00 0.00 0.00 2.15
2942 8180 6.939730 TCAGTAACTTGAAATTGTATCCAGCA 59.060 34.615 0.00 0.00 0.00 4.41
2951 8189 6.095377 GGAGGCATTCAGTAACTTGAAATTG 58.905 40.000 0.00 0.00 40.21 2.32
2976 8219 7.054124 TGACATAAAATGGAGGACAATAGGTC 58.946 38.462 0.00 0.00 39.17 3.85
2981 8224 5.263599 TGCTGACATAAAATGGAGGACAAT 58.736 37.500 0.00 0.00 33.60 2.71
3001 8244 2.964310 ATCTTGCCTGTCGCCTGCT 61.964 57.895 0.00 0.00 36.24 4.24
3009 8259 1.302752 TTGCGCTCATCTTGCCTGT 60.303 52.632 9.73 0.00 0.00 4.00
3116 8366 1.110442 CCACCTTGTTGCAACCTTCA 58.890 50.000 26.14 5.18 0.00 3.02
3164 8414 0.615331 TAGCCTTGCCACAGAGGAAG 59.385 55.000 0.00 0.00 41.22 3.46
3170 8420 1.224075 CGATGATAGCCTTGCCACAG 58.776 55.000 0.00 0.00 0.00 3.66
3287 8537 4.937620 CCTACTGCAGTTTGTCACATACAT 59.062 41.667 27.06 0.00 38.10 2.29
3373 8628 2.858158 CGGTTTCCGGTTTCGAGC 59.142 61.111 0.00 0.00 44.15 5.03
3442 8697 8.610248 TCATTACCTTGTAAATCTTTTGACGA 57.390 30.769 0.00 0.00 0.00 4.20
3495 8761 3.571571 CAAACCAGTGCTCATTCATGTG 58.428 45.455 0.00 0.00 0.00 3.21
3496 8762 2.029649 GCAAACCAGTGCTCATTCATGT 60.030 45.455 0.00 0.00 41.51 3.21
3506 8772 1.135286 GCAATAGAGGCAAACCAGTGC 60.135 52.381 0.00 0.00 44.14 4.40
3527 8793 3.419943 TGCATGCAGACATTGGTTAGAA 58.580 40.909 18.46 0.00 32.87 2.10
3541 8807 4.112433 TCGCCCTGGATGCATGCA 62.112 61.111 25.04 25.04 0.00 3.96
3611 8877 2.160205 GGTAAACTGGACCTGCTTTCC 58.840 52.381 0.00 0.00 33.86 3.13
3649 8915 1.532794 GCATTGTGGTGACCCCCAA 60.533 57.895 0.00 2.41 35.92 4.12
3661 8927 2.507407 ACTTTATCCCCACGCATTGT 57.493 45.000 0.00 0.00 0.00 2.71
3687 8953 7.554211 ACAATGAGAGCACATATATGATCGAT 58.446 34.615 19.63 0.00 40.01 3.59
3714 8980 9.816354 AAACTGTAATTTAATCTGCAAAACTGT 57.184 25.926 0.00 0.00 0.00 3.55
3750 9016 7.068226 ACCAACTTAGTCTGCAAAACTGTAATT 59.932 33.333 10.84 0.00 0.00 1.40
3751 9017 6.546034 ACCAACTTAGTCTGCAAAACTGTAAT 59.454 34.615 10.84 0.00 0.00 1.89
3753 9019 5.433526 ACCAACTTAGTCTGCAAAACTGTA 58.566 37.500 10.84 0.31 0.00 2.74
3754 9020 4.270008 ACCAACTTAGTCTGCAAAACTGT 58.730 39.130 10.84 0.19 0.00 3.55
3755 9021 4.900635 ACCAACTTAGTCTGCAAAACTG 57.099 40.909 10.84 0.00 0.00 3.16
3756 9022 5.433526 TGTACCAACTTAGTCTGCAAAACT 58.566 37.500 6.64 6.64 0.00 2.66
3757 9023 5.744666 TGTACCAACTTAGTCTGCAAAAC 57.255 39.130 0.00 0.00 0.00 2.43
3758 9024 5.825679 ACATGTACCAACTTAGTCTGCAAAA 59.174 36.000 0.00 0.00 0.00 2.44
3759 9025 5.373222 ACATGTACCAACTTAGTCTGCAAA 58.627 37.500 0.00 0.00 0.00 3.68
3762 9028 4.755123 ACAACATGTACCAACTTAGTCTGC 59.245 41.667 0.00 0.00 0.00 4.26
3763 9029 9.817809 ATATACAACATGTACCAACTTAGTCTG 57.182 33.333 0.00 0.00 35.42 3.51
3764 9030 9.817809 CATATACAACATGTACCAACTTAGTCT 57.182 33.333 0.00 0.00 35.42 3.24
3765 9031 9.811995 TCATATACAACATGTACCAACTTAGTC 57.188 33.333 0.00 0.00 35.42 2.59
3766 9032 9.817809 CTCATATACAACATGTACCAACTTAGT 57.182 33.333 0.00 0.00 35.42 2.24
3769 9035 9.547753 GATCTCATATACAACATGTACCAACTT 57.452 33.333 0.00 0.00 35.42 2.66
3796 9163 1.402968 CGAAGGGAATTGACCATGCAG 59.597 52.381 0.00 0.00 0.00 4.41
3878 9245 1.902918 ACAAAATGCTCTGCCGCCA 60.903 52.632 0.00 0.00 0.00 5.69
3941 9527 5.483937 TCTGCTATCAAGGACAAGGACTTTA 59.516 40.000 0.00 0.00 0.00 1.85
3947 9533 4.394300 CACTTTCTGCTATCAAGGACAAGG 59.606 45.833 0.00 0.00 0.00 3.61
3952 9538 6.544928 TCATACACTTTCTGCTATCAAGGA 57.455 37.500 0.00 0.00 0.00 3.36
4024 9610 3.181492 CGCCCATGCATGTTTACATAACA 60.181 43.478 24.58 0.00 37.32 2.41
4460 10046 2.900269 GAAGGGGGAGGGAGAGGACC 62.900 70.000 0.00 0.00 0.00 4.46
4461 10047 1.383386 GAAGGGGGAGGGAGAGGAC 60.383 68.421 0.00 0.00 0.00 3.85
4462 10048 2.647949 GGAAGGGGGAGGGAGAGGA 61.648 68.421 0.00 0.00 0.00 3.71
4463 10049 2.040359 GGAAGGGGGAGGGAGAGG 60.040 72.222 0.00 0.00 0.00 3.69
4464 10050 2.040359 GGGAAGGGGGAGGGAGAG 60.040 72.222 0.00 0.00 0.00 3.20
4465 10051 2.271493 GATGGGAAGGGGGAGGGAGA 62.271 65.000 0.00 0.00 0.00 3.71
4466 10052 1.772156 GATGGGAAGGGGGAGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
4467 10053 2.271493 GAGATGGGAAGGGGGAGGGA 62.271 65.000 0.00 0.00 0.00 4.20
4468 10054 1.772156 GAGATGGGAAGGGGGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
4469 10055 2.143419 CGAGATGGGAAGGGGGAGG 61.143 68.421 0.00 0.00 0.00 4.30
4470 10056 2.812619 GCGAGATGGGAAGGGGGAG 61.813 68.421 0.00 0.00 0.00 4.30
4471 10057 2.768344 GCGAGATGGGAAGGGGGA 60.768 66.667 0.00 0.00 0.00 4.81
4472 10058 3.878667 GGCGAGATGGGAAGGGGG 61.879 72.222 0.00 0.00 0.00 5.40
4473 10059 4.241555 CGGCGAGATGGGAAGGGG 62.242 72.222 0.00 0.00 0.00 4.79
4474 10060 4.918201 GCGGCGAGATGGGAAGGG 62.918 72.222 12.98 0.00 0.00 3.95
4475 10061 4.918201 GGCGGCGAGATGGGAAGG 62.918 72.222 12.98 0.00 0.00 3.46
4495 10081 4.389576 GTGCACGCTCGGGCTTTG 62.390 66.667 17.69 3.08 46.30 2.77
4501 10087 4.662961 TCACTGGTGCACGCTCGG 62.663 66.667 11.45 4.76 0.00 4.63
4502 10088 3.108289 CTCACTGGTGCACGCTCG 61.108 66.667 11.45 1.24 0.00 5.03
4503 10089 2.740055 CCTCACTGGTGCACGCTC 60.740 66.667 11.45 0.00 0.00 5.03
4504 10090 4.320456 CCCTCACTGGTGCACGCT 62.320 66.667 11.45 0.00 0.00 5.07
4531 10117 3.316573 GAGGTTGCCCAGGGAGACG 62.317 68.421 10.89 0.00 0.00 4.18
4532 10118 2.671682 GAGGTTGCCCAGGGAGAC 59.328 66.667 10.89 6.38 0.00 3.36
4533 10119 2.610859 GGAGGTTGCCCAGGGAGA 60.611 66.667 10.89 0.00 0.00 3.71
4534 10120 2.935481 TGGAGGTTGCCCAGGGAG 60.935 66.667 10.89 0.00 0.00 4.30
4535 10121 3.256960 GTGGAGGTTGCCCAGGGA 61.257 66.667 10.89 0.00 33.75 4.20
4536 10122 4.366684 GGTGGAGGTTGCCCAGGG 62.367 72.222 0.00 0.00 33.75 4.45
4537 10123 4.366684 GGGTGGAGGTTGCCCAGG 62.367 72.222 0.00 0.00 41.93 4.45
4538 10124 3.260100 AGGGTGGAGGTTGCCCAG 61.260 66.667 0.00 0.00 44.69 4.45
4539 10125 3.256960 GAGGGTGGAGGTTGCCCA 61.257 66.667 0.00 0.00 44.69 5.36
4540 10126 2.936032 AGAGGGTGGAGGTTGCCC 60.936 66.667 0.00 0.00 42.64 5.36
4541 10127 2.671682 GAGAGGGTGGAGGTTGCC 59.328 66.667 0.00 0.00 0.00 4.52
4542 10128 1.904990 GAGGAGAGGGTGGAGGTTGC 61.905 65.000 0.00 0.00 0.00 4.17
4543 10129 1.268283 GGAGGAGAGGGTGGAGGTTG 61.268 65.000 0.00 0.00 0.00 3.77
4544 10130 1.081277 GGAGGAGAGGGTGGAGGTT 59.919 63.158 0.00 0.00 0.00 3.50
4545 10131 2.781406 GGAGGAGAGGGTGGAGGT 59.219 66.667 0.00 0.00 0.00 3.85
4546 10132 2.041405 GGGAGGAGAGGGTGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
4547 10133 2.041405 GGGGAGGAGAGGGTGGAG 60.041 72.222 0.00 0.00 0.00 3.86
4548 10134 2.540910 AGGGGAGGAGAGGGTGGA 60.541 66.667 0.00 0.00 0.00 4.02
4549 10135 2.041405 GAGGGGAGGAGAGGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
4550 10136 2.041405 GGAGGGGAGGAGAGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
4551 10137 2.204705 AGGAGGGGAGGAGAGGGT 60.205 66.667 0.00 0.00 0.00 4.34
4552 10138 2.612251 GAGGAGGGGAGGAGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
4553 10139 2.197324 CGAGGAGGGGAGGAGAGG 59.803 72.222 0.00 0.00 0.00 3.69
4554 10140 1.040339 CAACGAGGAGGGGAGGAGAG 61.040 65.000 0.00 0.00 0.00 3.20
4555 10141 1.000486 CAACGAGGAGGGGAGGAGA 60.000 63.158 0.00 0.00 0.00 3.71
4556 10142 2.060980 CCAACGAGGAGGGGAGGAG 61.061 68.421 0.00 0.00 41.22 3.69
4557 10143 2.038975 CCAACGAGGAGGGGAGGA 59.961 66.667 0.00 0.00 41.22 3.71
4558 10144 3.083997 CCCAACGAGGAGGGGAGG 61.084 72.222 0.00 0.00 45.08 4.30
4585 10171 3.092192 CTTGCAGATCTGGTGCGCG 62.092 63.158 23.89 0.00 44.35 6.86
4586 10172 2.758089 CCTTGCAGATCTGGTGCGC 61.758 63.158 23.89 9.84 44.35 6.09
4587 10173 2.758089 GCCTTGCAGATCTGGTGCG 61.758 63.158 23.89 0.00 44.35 5.34
4588 10174 2.413142 GGCCTTGCAGATCTGGTGC 61.413 63.158 23.89 11.48 41.59 5.01
4589 10175 1.751927 GGGCCTTGCAGATCTGGTG 60.752 63.158 23.89 0.02 0.00 4.17
4590 10176 2.679716 GGGCCTTGCAGATCTGGT 59.320 61.111 23.89 0.00 0.00 4.00
4591 10177 2.515523 CGGGCCTTGCAGATCTGG 60.516 66.667 23.89 8.63 0.00 3.86
4592 10178 2.515523 CCGGGCCTTGCAGATCTG 60.516 66.667 18.84 18.84 0.00 2.90
4593 10179 3.011517 ACCGGGCCTTGCAGATCT 61.012 61.111 6.32 0.00 0.00 2.75
4594 10180 2.514824 GACCGGGCCTTGCAGATC 60.515 66.667 6.32 0.00 0.00 2.75
4595 10181 4.473520 CGACCGGGCCTTGCAGAT 62.474 66.667 6.32 0.00 0.00 2.90
4656 10242 4.803426 CTCCTCTCCACCGCACGC 62.803 72.222 0.00 0.00 0.00 5.34
4657 10243 4.135153 CCTCCTCTCCACCGCACG 62.135 72.222 0.00 0.00 0.00 5.34
4658 10244 4.459089 GCCTCCTCTCCACCGCAC 62.459 72.222 0.00 0.00 0.00 5.34
4662 10248 3.775654 CACCGCCTCCTCTCCACC 61.776 72.222 0.00 0.00 0.00 4.61
4663 10249 2.997897 ACACCGCCTCCTCTCCAC 60.998 66.667 0.00 0.00 0.00 4.02
4664 10250 2.680352 GACACCGCCTCCTCTCCA 60.680 66.667 0.00 0.00 0.00 3.86
4665 10251 3.827898 CGACACCGCCTCCTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
4666 10252 3.827898 CCGACACCGCCTCCTCTC 61.828 72.222 0.00 0.00 0.00 3.20
4667 10253 4.361971 TCCGACACCGCCTCCTCT 62.362 66.667 0.00 0.00 0.00 3.69
4668 10254 4.131088 GTCCGACACCGCCTCCTC 62.131 72.222 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.