Multiple sequence alignment - TraesCS2D01G442300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G442300 chr2D 100.000 2501 0 0 1 2501 552608706 552606206 0.000000e+00 4619
1 TraesCS2D01G442300 chr2A 94.742 1008 36 5 778 1770 693243883 693242878 0.000000e+00 1552
2 TraesCS2D01G442300 chr2A 87.260 730 48 18 1773 2498 693242633 693241945 0.000000e+00 791
3 TraesCS2D01G442300 chr2B 97.365 835 19 2 779 1612 658211008 658210176 0.000000e+00 1417
4 TraesCS2D01G442300 chr2B 83.427 531 63 17 1646 2153 658210175 658209647 1.050000e-128 470
5 TraesCS2D01G442300 chr6D 96.974 694 21 0 1 694 470315417 470316110 0.000000e+00 1166
6 TraesCS2D01G442300 chr6D 85.876 708 95 5 2 706 27472285 27471580 0.000000e+00 749
7 TraesCS2D01G442300 chr6D 91.365 498 43 0 995 1492 349915386 349914889 0.000000e+00 682
8 TraesCS2D01G442300 chr1D 90.649 663 61 1 1 663 457532881 457532220 0.000000e+00 880
9 TraesCS2D01G442300 chr1D 85.614 709 95 7 1 705 341271518 341272223 0.000000e+00 737
10 TraesCS2D01G442300 chr5A 87.019 701 85 5 1 699 205005550 205004854 0.000000e+00 785
11 TraesCS2D01G442300 chr5D 86.370 697 92 3 1 695 136873846 136873151 0.000000e+00 758
12 TraesCS2D01G442300 chr5D 86.522 690 82 10 5 689 436797157 436796474 0.000000e+00 749
13 TraesCS2D01G442300 chr3A 86.533 698 82 11 1 693 715797992 715797302 0.000000e+00 758
14 TraesCS2D01G442300 chr3A 86.351 696 87 8 1 693 675885273 675884583 0.000000e+00 752
15 TraesCS2D01G442300 chr6A 91.968 498 40 0 995 1492 494477961 494478458 0.000000e+00 699
16 TraesCS2D01G442300 chr6B 91.566 498 42 0 995 1492 530572822 530573319 0.000000e+00 688


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G442300 chr2D 552606206 552608706 2500 True 4619.0 4619 100.000 1 2501 1 chr2D.!!$R1 2500
1 TraesCS2D01G442300 chr2A 693241945 693243883 1938 True 1171.5 1552 91.001 778 2498 2 chr2A.!!$R1 1720
2 TraesCS2D01G442300 chr2B 658209647 658211008 1361 True 943.5 1417 90.396 779 2153 2 chr2B.!!$R1 1374
3 TraesCS2D01G442300 chr6D 470315417 470316110 693 False 1166.0 1166 96.974 1 694 1 chr6D.!!$F1 693
4 TraesCS2D01G442300 chr6D 27471580 27472285 705 True 749.0 749 85.876 2 706 1 chr6D.!!$R1 704
5 TraesCS2D01G442300 chr1D 457532220 457532881 661 True 880.0 880 90.649 1 663 1 chr1D.!!$R1 662
6 TraesCS2D01G442300 chr1D 341271518 341272223 705 False 737.0 737 85.614 1 705 1 chr1D.!!$F1 704
7 TraesCS2D01G442300 chr5A 205004854 205005550 696 True 785.0 785 87.019 1 699 1 chr5A.!!$R1 698
8 TraesCS2D01G442300 chr5D 136873151 136873846 695 True 758.0 758 86.370 1 695 1 chr5D.!!$R1 694
9 TraesCS2D01G442300 chr5D 436796474 436797157 683 True 749.0 749 86.522 5 689 1 chr5D.!!$R2 684
10 TraesCS2D01G442300 chr3A 715797302 715797992 690 True 758.0 758 86.533 1 693 1 chr3A.!!$R2 692
11 TraesCS2D01G442300 chr3A 675884583 675885273 690 True 752.0 752 86.351 1 693 1 chr3A.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 858 0.112995 AAAATGGGCCTCACAGCAGA 59.887 50.0 4.53 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1773 1.021202 TGAAACAAACAGGTCCGCAG 58.979 50.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 5.570439 GCAGGTAGCTAAGCATCAAGGATAT 60.570 44.000 0.00 0.00 41.15 1.63
204 207 7.998383 TGGGATAATGCTAGCAAAATTCTAGAA 59.002 33.333 23.54 7.82 36.50 2.10
243 246 3.189287 AGCTGCTTTGTATGTTGCACTAC 59.811 43.478 0.00 0.00 0.00 2.73
523 530 8.932434 ACTTTTTAAACCCCAAATAAATGCAT 57.068 26.923 0.00 0.00 0.00 3.96
699 708 2.775384 TCCCTAGCCACGTCCATTATTT 59.225 45.455 0.00 0.00 0.00 1.40
700 709 3.968649 TCCCTAGCCACGTCCATTATTTA 59.031 43.478 0.00 0.00 0.00 1.40
703 712 5.768164 CCCTAGCCACGTCCATTATTTATTT 59.232 40.000 0.00 0.00 0.00 1.40
704 713 6.938030 CCCTAGCCACGTCCATTATTTATTTA 59.062 38.462 0.00 0.00 0.00 1.40
705 714 7.610305 CCCTAGCCACGTCCATTATTTATTTAT 59.390 37.037 0.00 0.00 0.00 1.40
706 715 9.010029 CCTAGCCACGTCCATTATTTATTTATT 57.990 33.333 0.00 0.00 0.00 1.40
745 754 8.903570 TTTGTATACATTTTTGAGCGGTAATG 57.096 30.769 6.36 6.34 34.87 1.90
746 755 7.618502 TGTATACATTTTTGAGCGGTAATGT 57.381 32.000 15.45 15.45 42.20 2.71
747 756 8.046294 TGTATACATTTTTGAGCGGTAATGTT 57.954 30.769 16.12 8.80 40.55 2.71
748 757 8.516234 TGTATACATTTTTGAGCGGTAATGTTT 58.484 29.630 16.12 11.95 40.55 2.83
749 758 9.349145 GTATACATTTTTGAGCGGTAATGTTTT 57.651 29.630 16.12 9.01 40.55 2.43
750 759 8.825667 ATACATTTTTGAGCGGTAATGTTTTT 57.174 26.923 16.12 3.13 40.55 1.94
840 852 1.270550 CTGACACAAAATGGGCCTCAC 59.729 52.381 4.53 0.00 0.00 3.51
846 858 0.112995 AAAATGGGCCTCACAGCAGA 59.887 50.000 4.53 0.00 0.00 4.26
865 877 0.485099 ACCACATAAAGCCCAACCCA 59.515 50.000 0.00 0.00 0.00 4.51
874 886 3.473113 AAGCCCAACCCAAATGATACT 57.527 42.857 0.00 0.00 0.00 2.12
905 917 6.619801 CACAAGGAAGGTGCTATATAAACC 57.380 41.667 6.25 6.25 0.00 3.27
942 954 1.608154 GAACCCTACTGCCCTTCCC 59.392 63.158 0.00 0.00 0.00 3.97
963 975 2.985116 GCCTCTCCCAAACCCTCCC 61.985 68.421 0.00 0.00 0.00 4.30
1622 1646 6.932400 CGGTAAAATATGATGTAGCCCTTGTA 59.068 38.462 0.00 0.00 0.00 2.41
1623 1647 7.606456 CGGTAAAATATGATGTAGCCCTTGTAT 59.394 37.037 0.00 0.00 0.00 2.29
1624 1648 8.730680 GGTAAAATATGATGTAGCCCTTGTATG 58.269 37.037 0.00 0.00 0.00 2.39
1648 1672 3.386726 CCAGACGATGTGGGTAGGAAATA 59.613 47.826 0.00 0.00 0.00 1.40
1651 1675 4.099573 AGACGATGTGGGTAGGAAATACAG 59.900 45.833 0.00 0.00 35.96 2.74
1654 1678 1.562475 TGTGGGTAGGAAATACAGCCC 59.438 52.381 0.00 0.00 35.96 5.19
1655 1679 1.562475 GTGGGTAGGAAATACAGCCCA 59.438 52.381 0.00 0.00 43.17 5.36
1747 1773 3.644884 ACAGTGCTGTGTGTACTACTC 57.355 47.619 3.80 0.00 43.11 2.59
1770 1796 4.580868 TGCGGACCTGTTTGTTTCATATA 58.419 39.130 0.00 0.00 0.00 0.86
1771 2039 4.634004 TGCGGACCTGTTTGTTTCATATAG 59.366 41.667 0.00 0.00 0.00 1.31
1776 2044 9.537192 CGGACCTGTTTGTTTCATATAGTTATA 57.463 33.333 0.00 0.00 0.00 0.98
1814 2083 5.581605 TGTCTTGTCTGTTGAAATTGCTTC 58.418 37.500 0.00 0.00 34.31 3.86
1855 2124 0.036765 TGGTATTGACTGGGCGACAC 60.037 55.000 0.00 0.00 0.00 3.67
1883 2152 7.378966 TCTGTGTAGTGTTTTGATCTCTAAGG 58.621 38.462 0.00 0.00 0.00 2.69
1920 2191 8.594881 TCTCTTTCAATCTTGAGTCAAAGTAC 57.405 34.615 7.06 0.00 38.61 2.73
1956 2231 1.003118 TGCCCTCGTTAATCACTGCTT 59.997 47.619 0.00 0.00 0.00 3.91
2080 2370 2.892784 ACTAAATCTACGAGCCCAGC 57.107 50.000 0.00 0.00 0.00 4.85
2166 2457 9.547753 AAATTCTATTGTATGCGAGTAACTGAT 57.452 29.630 0.00 0.00 0.00 2.90
2199 2490 7.452880 TCTTGAGGATGTATCTTTGTTTTGG 57.547 36.000 0.00 0.00 0.00 3.28
2200 2491 5.643379 TGAGGATGTATCTTTGTTTTGGC 57.357 39.130 0.00 0.00 0.00 4.52
2207 2498 5.016173 TGTATCTTTGTTTTGGCCTAGCAT 58.984 37.500 3.32 0.00 0.00 3.79
2211 2502 4.458989 TCTTTGTTTTGGCCTAGCATACAG 59.541 41.667 3.32 0.00 0.00 2.74
2218 2509 1.974236 GGCCTAGCATACAGGAGACAT 59.026 52.381 0.00 0.00 34.91 3.06
2236 2527 8.270744 AGGAGACATACTTTATCTTGCAGATTT 58.729 33.333 4.35 0.00 36.20 2.17
2237 2528 8.897752 GGAGACATACTTTATCTTGCAGATTTT 58.102 33.333 4.35 0.00 36.20 1.82
2262 2553 7.972832 ACTTAGTATTTGAATGTCGGTTGAA 57.027 32.000 0.00 0.00 0.00 2.69
2271 2562 2.107950 TGTCGGTTGAATCATGTCCC 57.892 50.000 0.00 0.00 0.00 4.46
2277 2568 2.091665 GGTTGAATCATGTCCCCTCCAT 60.092 50.000 0.00 0.00 0.00 3.41
2279 2570 1.776667 TGAATCATGTCCCCTCCATCC 59.223 52.381 0.00 0.00 0.00 3.51
2286 2577 1.715931 TGTCCCCTCCATCCAAAATGT 59.284 47.619 0.00 0.00 0.00 2.71
2316 2607 9.832445 TTTGAATAATAGTTCTTTCGGCTATCT 57.168 29.630 0.00 0.00 0.00 1.98
2323 2614 6.969828 AGTTCTTTCGGCTATCTAAGTTTG 57.030 37.500 0.00 0.00 0.00 2.93
2324 2615 6.698380 AGTTCTTTCGGCTATCTAAGTTTGA 58.302 36.000 0.00 0.00 0.00 2.69
2325 2616 7.331791 AGTTCTTTCGGCTATCTAAGTTTGAT 58.668 34.615 5.18 5.18 0.00 2.57
2326 2617 7.492994 AGTTCTTTCGGCTATCTAAGTTTGATC 59.507 37.037 2.95 0.00 0.00 2.92
2327 2618 5.977725 TCTTTCGGCTATCTAAGTTTGATCG 59.022 40.000 2.95 2.45 0.00 3.69
2350 2641 5.454554 CGATGAATTTAACTGATGCTTGCAG 59.545 40.000 0.87 0.00 39.26 4.41
2351 2642 4.487948 TGAATTTAACTGATGCTTGCAGC 58.512 39.130 3.72 3.72 42.82 5.25
2377 2668 8.816144 CAAGTATGCTCTTCTTTGATCTTAGAC 58.184 37.037 0.00 0.00 0.00 2.59
2391 2682 7.004555 TGATCTTAGACCACTTGCTTTCTTA 57.995 36.000 0.00 0.00 0.00 2.10
2404 2695 8.939929 CACTTGCTTTCTTAGAAATCAGTCATA 58.060 33.333 7.92 0.00 0.00 2.15
2428 2719 3.389329 ACTCTGTCTCACCAGTTTGATGT 59.611 43.478 0.00 0.00 34.02 3.06
2491 2782 7.012607 TCTCTGATGATATGGAAGTCATACCA 58.987 38.462 0.00 0.00 40.75 3.25
2495 2786 7.748677 TGATGATATGGAAGTCATACCATGTT 58.251 34.615 0.00 0.00 41.47 2.71
2498 2789 3.719268 TGGAAGTCATACCATGTTGCT 57.281 42.857 0.00 0.00 0.00 3.91
2499 2790 4.032960 TGGAAGTCATACCATGTTGCTT 57.967 40.909 0.00 0.00 0.00 3.91
2500 2791 5.172687 TGGAAGTCATACCATGTTGCTTA 57.827 39.130 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 141 9.237187 TGGTTGCTCAATTACTTATTGTTGATA 57.763 29.630 0.00 0.00 43.41 2.15
204 207 4.763793 AGCAGCTTCATCACACTATTTGTT 59.236 37.500 0.00 0.00 35.67 2.83
208 211 4.763793 ACAAAGCAGCTTCATCACACTATT 59.236 37.500 8.48 0.00 0.00 1.73
243 246 5.375417 TCACACAAAACATAAGGCATCTG 57.625 39.130 0.00 0.00 0.00 2.90
320 324 6.306643 AGAGCTATAAGGAAGCAACTTCTT 57.693 37.500 7.24 0.00 42.62 2.52
322 326 8.581578 ACTATAGAGCTATAAGGAAGCAACTTC 58.418 37.037 6.78 0.00 42.62 3.01
523 530 2.311841 TCAGTCTAGATCCTGTCCCACA 59.688 50.000 9.50 0.00 0.00 4.17
719 728 9.515020 CATTACCGCTCAAAAATGTATACAAAT 57.485 29.630 10.14 0.00 0.00 2.32
720 729 8.516234 ACATTACCGCTCAAAAATGTATACAAA 58.484 29.630 10.14 0.00 39.96 2.83
721 730 8.046294 ACATTACCGCTCAAAAATGTATACAA 57.954 30.769 10.14 0.00 39.96 2.41
722 731 7.618502 ACATTACCGCTCAAAAATGTATACA 57.381 32.000 8.27 8.27 39.96 2.29
723 732 8.905103 AAACATTACCGCTCAAAAATGTATAC 57.095 30.769 0.00 0.00 40.66 1.47
724 733 9.915629 AAAAACATTACCGCTCAAAAATGTATA 57.084 25.926 0.00 0.00 40.66 1.47
725 734 8.825667 AAAAACATTACCGCTCAAAAATGTAT 57.174 26.923 0.00 0.00 40.66 2.29
840 852 1.098050 GGGCTTTATGTGGTCTGCTG 58.902 55.000 0.00 0.00 0.00 4.41
846 858 0.485099 TGGGTTGGGCTTTATGTGGT 59.515 50.000 0.00 0.00 0.00 4.16
905 917 2.006772 GGCACGAAGAGTTATGCGG 58.993 57.895 0.00 0.00 39.02 5.69
942 954 0.322906 GAGGGTTTGGGAGAGGCTTG 60.323 60.000 0.00 0.00 0.00 4.01
1622 1646 1.757118 CTACCCACATCGTCTGGACAT 59.243 52.381 1.63 0.00 0.00 3.06
1623 1647 1.182667 CTACCCACATCGTCTGGACA 58.817 55.000 1.63 0.00 0.00 4.02
1624 1648 0.460311 CCTACCCACATCGTCTGGAC 59.540 60.000 0.00 0.00 0.00 4.02
1648 1672 2.292828 AATTGCTTGTAGTGGGCTGT 57.707 45.000 0.00 0.00 0.00 4.40
1651 1675 1.204704 GGGAAATTGCTTGTAGTGGGC 59.795 52.381 0.00 0.00 0.00 5.36
1654 1678 3.573967 ACAAGGGGAAATTGCTTGTAGTG 59.426 43.478 0.00 0.00 36.62 2.74
1655 1679 3.844640 ACAAGGGGAAATTGCTTGTAGT 58.155 40.909 0.00 0.00 36.62 2.73
1747 1773 1.021202 TGAAACAAACAGGTCCGCAG 58.979 50.000 0.00 0.00 0.00 5.18
1776 2044 8.362639 ACAGACAAGACAAGAAAATTGCAATAT 58.637 29.630 13.39 4.75 0.00 1.28
1785 2053 7.063308 GCAATTTCAACAGACAAGACAAGAAAA 59.937 33.333 0.00 0.00 0.00 2.29
1789 2057 5.585390 AGCAATTTCAACAGACAAGACAAG 58.415 37.500 0.00 0.00 0.00 3.16
1792 2060 5.684626 CAGAAGCAATTTCAACAGACAAGAC 59.315 40.000 0.00 0.00 38.31 3.01
1814 2083 5.453057 CCAGGATAGAAACTCATGTCTCCAG 60.453 48.000 0.00 0.00 0.00 3.86
1855 2124 5.692204 AGAGATCAAAACACTACACAGAACG 59.308 40.000 0.00 0.00 0.00 3.95
1942 2217 5.990408 ACAAAAGAGAAGCAGTGATTAACG 58.010 37.500 0.00 0.00 0.00 3.18
2015 2305 5.280654 TCACAAGAGTGCATATGATAGCA 57.719 39.130 6.97 0.00 45.49 3.49
2072 2362 2.426842 AATAAGGAACTGCTGGGCTC 57.573 50.000 0.00 0.00 40.86 4.70
2080 2370 6.271488 TGCAATTCAGGAAATAAGGAACTG 57.729 37.500 0.00 0.00 40.86 3.16
2166 2457 3.213206 ACATCCTCAAGAACAAGCACA 57.787 42.857 0.00 0.00 0.00 4.57
2199 2490 3.829601 AGTATGTCTCCTGTATGCTAGGC 59.170 47.826 0.00 0.00 35.23 3.93
2200 2491 6.412362 AAAGTATGTCTCCTGTATGCTAGG 57.588 41.667 0.00 0.00 36.63 3.02
2207 2498 7.342026 TCTGCAAGATAAAGTATGTCTCCTGTA 59.658 37.037 0.00 0.00 38.67 2.74
2236 2527 9.491675 TTCAACCGACATTCAAATACTAAGTAA 57.508 29.630 0.00 0.00 0.00 2.24
2237 2528 9.661563 ATTCAACCGACATTCAAATACTAAGTA 57.338 29.630 0.00 0.00 0.00 2.24
2243 2534 7.250569 ACATGATTCAACCGACATTCAAATAC 58.749 34.615 0.00 0.00 0.00 1.89
2255 2546 1.668419 GAGGGGACATGATTCAACCG 58.332 55.000 0.00 0.00 0.00 4.44
2262 2553 1.911454 TTGGATGGAGGGGACATGAT 58.089 50.000 0.00 0.00 0.00 2.45
2298 2589 8.475639 TCAAACTTAGATAGCCGAAAGAACTAT 58.524 33.333 0.00 0.00 34.40 2.12
2299 2590 7.833786 TCAAACTTAGATAGCCGAAAGAACTA 58.166 34.615 0.00 0.00 0.00 2.24
2300 2591 6.698380 TCAAACTTAGATAGCCGAAAGAACT 58.302 36.000 0.00 0.00 0.00 3.01
2301 2592 6.963049 TCAAACTTAGATAGCCGAAAGAAC 57.037 37.500 0.00 0.00 0.00 3.01
2302 2593 6.475727 CGATCAAACTTAGATAGCCGAAAGAA 59.524 38.462 0.00 0.00 0.00 2.52
2303 2594 5.977725 CGATCAAACTTAGATAGCCGAAAGA 59.022 40.000 0.00 0.00 0.00 2.52
2304 2595 5.977725 TCGATCAAACTTAGATAGCCGAAAG 59.022 40.000 0.00 0.00 0.00 2.62
2305 2596 5.898174 TCGATCAAACTTAGATAGCCGAAA 58.102 37.500 0.00 0.00 0.00 3.46
2306 2597 5.509716 TCGATCAAACTTAGATAGCCGAA 57.490 39.130 0.00 0.00 0.00 4.30
2307 2598 5.240844 TCATCGATCAAACTTAGATAGCCGA 59.759 40.000 0.00 0.00 0.00 5.54
2308 2599 5.461526 TCATCGATCAAACTTAGATAGCCG 58.538 41.667 0.00 0.00 0.00 5.52
2309 2600 7.897575 ATTCATCGATCAAACTTAGATAGCC 57.102 36.000 0.00 0.00 0.00 3.93
2317 2608 9.778993 CATCAGTTAAATTCATCGATCAAACTT 57.221 29.630 0.00 0.00 0.00 2.66
2318 2609 7.912250 GCATCAGTTAAATTCATCGATCAAACT 59.088 33.333 0.00 0.00 0.00 2.66
2319 2610 7.912250 AGCATCAGTTAAATTCATCGATCAAAC 59.088 33.333 0.00 0.00 0.00 2.93
2320 2611 7.988737 AGCATCAGTTAAATTCATCGATCAAA 58.011 30.769 0.00 0.00 0.00 2.69
2321 2612 7.558161 AGCATCAGTTAAATTCATCGATCAA 57.442 32.000 0.00 0.00 0.00 2.57
2322 2613 7.412063 CAAGCATCAGTTAAATTCATCGATCA 58.588 34.615 0.00 0.00 0.00 2.92
2323 2614 6.359087 GCAAGCATCAGTTAAATTCATCGATC 59.641 38.462 0.00 0.00 0.00 3.69
2324 2615 6.183360 TGCAAGCATCAGTTAAATTCATCGAT 60.183 34.615 0.00 0.00 0.00 3.59
2325 2616 5.123661 TGCAAGCATCAGTTAAATTCATCGA 59.876 36.000 0.00 0.00 0.00 3.59
2326 2617 5.334319 TGCAAGCATCAGTTAAATTCATCG 58.666 37.500 0.00 0.00 0.00 3.84
2327 2618 6.807708 CTGCAAGCATCAGTTAAATTCATC 57.192 37.500 0.00 0.00 0.00 2.92
2351 2642 8.816144 GTCTAAGATCAAAGAAGAGCATACTTG 58.184 37.037 0.00 0.00 0.00 3.16
2352 2643 7.984617 GGTCTAAGATCAAAGAAGAGCATACTT 59.015 37.037 0.00 0.00 35.36 2.24
2354 2645 7.223777 GTGGTCTAAGATCAAAGAAGAGCATAC 59.776 40.741 13.81 3.95 43.93 2.39
2355 2646 7.124901 AGTGGTCTAAGATCAAAGAAGAGCATA 59.875 37.037 13.81 0.00 43.93 3.14
2356 2647 6.070309 AGTGGTCTAAGATCAAAGAAGAGCAT 60.070 38.462 13.81 5.37 43.93 3.79
2358 2649 5.729510 AGTGGTCTAAGATCAAAGAAGAGC 58.270 41.667 0.00 0.73 35.72 4.09
2359 2650 6.091986 GCAAGTGGTCTAAGATCAAAGAAGAG 59.908 42.308 0.00 0.00 0.00 2.85
2360 2651 5.934625 GCAAGTGGTCTAAGATCAAAGAAGA 59.065 40.000 0.00 0.00 0.00 2.87
2361 2652 5.936956 AGCAAGTGGTCTAAGATCAAAGAAG 59.063 40.000 0.00 0.00 0.00 2.85
2362 2653 5.869579 AGCAAGTGGTCTAAGATCAAAGAA 58.130 37.500 0.00 0.00 0.00 2.52
2363 2654 5.489792 AGCAAGTGGTCTAAGATCAAAGA 57.510 39.130 0.00 0.00 0.00 2.52
2364 2655 6.429385 AGAAAGCAAGTGGTCTAAGATCAAAG 59.571 38.462 0.00 0.00 0.00 2.77
2372 2663 7.936847 TGATTTCTAAGAAAGCAAGTGGTCTAA 59.063 33.333 0.00 0.00 0.00 2.10
2377 2668 6.205464 TGACTGATTTCTAAGAAAGCAAGTGG 59.795 38.462 0.00 0.00 0.00 4.00
2391 2682 7.816995 GTGAGACAGAGTTTATGACTGATTTCT 59.183 37.037 0.00 0.00 39.19 2.52
2404 2695 4.487714 TCAAACTGGTGAGACAGAGTTT 57.512 40.909 0.00 0.00 40.97 2.66
2406 2697 3.389329 ACATCAAACTGGTGAGACAGAGT 59.611 43.478 0.00 0.00 40.97 3.24
2443 2734 3.960755 TGATAATCACCTCGACATCAGGT 59.039 43.478 0.00 0.00 45.89 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.