Multiple sequence alignment - TraesCS2D01G442000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G442000 chr2D 100.000 3932 0 0 555 4486 552192074 552196005 0.000000e+00 7262.0
1 TraesCS2D01G442000 chr2D 100.000 367 0 0 1 367 552191520 552191886 0.000000e+00 678.0
2 TraesCS2D01G442000 chr2D 96.629 89 3 0 769 857 552192245 552192333 1.010000e-31 148.0
3 TraesCS2D01G442000 chr2D 96.629 89 3 0 726 814 552192288 552192376 1.010000e-31 148.0
4 TraesCS2D01G442000 chr2D 100.000 43 0 0 4428 4470 100313646 100313688 3.720000e-11 80.5
5 TraesCS2D01G442000 chr2D 97.826 46 1 0 556 601 552191841 552191886 3.720000e-11 80.5
6 TraesCS2D01G442000 chr2D 97.826 46 1 0 322 367 552192075 552192120 3.720000e-11 80.5
7 TraesCS2D01G442000 chr2A 95.326 2910 113 15 769 3662 692847821 692850723 0.000000e+00 4599.0
8 TraesCS2D01G442000 chr2A 91.129 372 22 6 1 367 692847059 692847424 1.120000e-135 494.0
9 TraesCS2D01G442000 chr2A 93.333 180 1 2 635 814 692847741 692847909 5.760000e-64 255.0
10 TraesCS2D01G442000 chr2A 92.857 70 5 0 4396 4465 258346287 258346218 7.940000e-18 102.0
11 TraesCS2D01G442000 chr2B 95.064 1560 67 4 2212 3761 657843999 657845558 0.000000e+00 2446.0
12 TraesCS2D01G442000 chr2B 87.161 1363 124 25 812 2160 657842660 657843985 0.000000e+00 1500.0
13 TraesCS2D01G442000 chr2B 93.488 215 12 2 1 213 657842020 657842234 7.240000e-83 318.0
14 TraesCS2D01G442000 chr2B 88.940 217 15 4 555 771 657842496 657842703 4.450000e-65 259.0
15 TraesCS2D01G442000 chr2B 85.992 257 14 10 4132 4381 657845979 657846220 5.760000e-64 255.0
16 TraesCS2D01G442000 chr2B 87.770 139 15 2 3937 4074 657845838 657845975 1.290000e-35 161.0
17 TraesCS2D01G442000 chr2B 95.833 48 2 0 4419 4466 281874090 281874137 1.340000e-10 78.7
18 TraesCS2D01G442000 chr2B 91.071 56 5 0 4420 4475 206114776 206114831 4.810000e-10 76.8
19 TraesCS2D01G442000 chr7D 82.983 999 166 4 2323 3319 28415888 28416884 0.000000e+00 900.0
20 TraesCS2D01G442000 chr7D 77.308 520 103 11 2804 3319 28435730 28436238 4.390000e-75 292.0
21 TraesCS2D01G442000 chrUn 82.101 1028 173 8 2323 3341 81995258 81996283 0.000000e+00 869.0
22 TraesCS2D01G442000 chr4A 80.256 390 74 3 2804 3191 702278813 702279201 1.580000e-74 291.0
23 TraesCS2D01G442000 chr7B 95.745 47 2 0 4420 4466 685247206 685247160 4.810000e-10 76.8
24 TraesCS2D01G442000 chr7A 91.071 56 4 1 4420 4475 581374300 581374354 1.730000e-09 75.0
25 TraesCS2D01G442000 chr7A 93.750 48 3 0 4421 4468 581374293 581374246 6.220000e-09 73.1
26 TraesCS2D01G442000 chr4B 89.655 58 6 0 4421 4478 642195605 642195662 1.730000e-09 75.0
27 TraesCS2D01G442000 chr1D 87.500 64 4 3 4396 4455 376239778 376239715 2.240000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G442000 chr2D 552191520 552196005 4485 False 1399.500000 7262 98.151667 1 4486 6 chr2D.!!$F2 4485
1 TraesCS2D01G442000 chr2A 692847059 692850723 3664 False 1782.666667 4599 93.262667 1 3662 3 chr2A.!!$F1 3661
2 TraesCS2D01G442000 chr2B 657842020 657846220 4200 False 823.166667 2446 89.735833 1 4381 6 chr2B.!!$F3 4380
3 TraesCS2D01G442000 chr7D 28415888 28416884 996 False 900.000000 900 82.983000 2323 3319 1 chr7D.!!$F1 996
4 TraesCS2D01G442000 chr7D 28435730 28436238 508 False 292.000000 292 77.308000 2804 3319 1 chr7D.!!$F2 515
5 TraesCS2D01G442000 chrUn 81995258 81996283 1025 False 869.000000 869 82.101000 2323 3341 1 chrUn.!!$F1 1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1259 0.035739 GAGAAAACGGTGCCCCACTA 59.964 55.0 0.00 0.00 34.40 2.74 F
817 1260 0.250597 AGAAAACGGTGCCCCACTAC 60.251 55.0 0.00 0.00 34.40 2.73 F
824 1267 0.400594 GGTGCCCCACTACAGAAACT 59.599 55.0 0.00 0.00 34.40 2.66 F
1149 1604 1.047002 CTTTTGGTGTCCATGGCCAA 58.953 50.0 10.96 15.99 40.14 4.52 F
2726 3187 0.256752 TCATCTCCAATGGTGCCCTG 59.743 55.0 0.00 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2543 3004 1.204941 ACTGCTACAACCGTCTGATCC 59.795 52.381 0.0 0.0 0.00 3.36 R
2549 3010 2.223377 CCTTTTGACTGCTACAACCGTC 59.777 50.000 0.0 0.0 0.00 4.79 R
2594 3055 3.005554 CTCATTCACGAATTGCTCCACT 58.994 45.455 0.0 0.0 0.00 4.00 R
2730 3191 7.017452 TGGGATTGATGTATTGTGGAGATGATA 59.983 37.037 0.0 0.0 0.00 2.15 R
4195 4783 0.250234 TTGCAGATGCGGACTAGCTT 59.750 50.000 0.0 0.0 45.83 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 159 4.074259 TGTCAGGTGGTGAAATCAATCAG 58.926 43.478 0.00 0.00 36.74 2.90
209 215 4.974368 TTCATATTTGGTTTAGGCACCG 57.026 40.909 0.00 0.00 40.09 4.94
230 363 6.591448 CACCGATGCATATATGTACAGACAAT 59.409 38.462 14.14 0.00 39.59 2.71
261 394 3.926058 TTAAAGCATCCCCTCTGGTAC 57.074 47.619 0.00 0.00 34.77 3.34
320 480 2.245806 AGGAAATGAGATGGAAAGGGGG 59.754 50.000 0.00 0.00 0.00 5.40
329 489 5.163055 TGAGATGGAAAGGGGGAAATGATAG 60.163 44.000 0.00 0.00 0.00 2.08
330 490 4.733988 AGATGGAAAGGGGGAAATGATAGT 59.266 41.667 0.00 0.00 0.00 2.12
331 491 5.917087 AGATGGAAAGGGGGAAATGATAGTA 59.083 40.000 0.00 0.00 0.00 1.82
332 492 6.392842 AGATGGAAAGGGGGAAATGATAGTAA 59.607 38.462 0.00 0.00 0.00 2.24
333 493 5.762279 TGGAAAGGGGGAAATGATAGTAAC 58.238 41.667 0.00 0.00 0.00 2.50
334 494 5.254267 TGGAAAGGGGGAAATGATAGTAACA 59.746 40.000 0.00 0.00 0.00 2.41
335 495 5.828328 GGAAAGGGGGAAATGATAGTAACAG 59.172 44.000 0.00 0.00 0.00 3.16
336 496 4.439253 AGGGGGAAATGATAGTAACAGC 57.561 45.455 0.00 0.00 0.00 4.40
337 497 3.139077 GGGGGAAATGATAGTAACAGCG 58.861 50.000 0.00 0.00 0.00 5.18
338 498 3.181458 GGGGGAAATGATAGTAACAGCGA 60.181 47.826 0.00 0.00 0.00 4.93
339 499 4.448210 GGGGAAATGATAGTAACAGCGAA 58.552 43.478 0.00 0.00 0.00 4.70
340 500 5.063880 GGGGAAATGATAGTAACAGCGAAT 58.936 41.667 0.00 0.00 0.00 3.34
341 501 6.228258 GGGGAAATGATAGTAACAGCGAATA 58.772 40.000 0.00 0.00 0.00 1.75
342 502 6.879458 GGGGAAATGATAGTAACAGCGAATAT 59.121 38.462 0.00 0.00 0.00 1.28
343 503 7.148407 GGGGAAATGATAGTAACAGCGAATATG 60.148 40.741 0.00 0.00 0.00 1.78
344 504 7.148407 GGGAAATGATAGTAACAGCGAATATGG 60.148 40.741 0.00 0.00 0.00 2.74
345 505 7.387948 GGAAATGATAGTAACAGCGAATATGGT 59.612 37.037 0.00 0.00 0.00 3.55
346 506 7.891183 AATGATAGTAACAGCGAATATGGTC 57.109 36.000 0.00 0.00 0.00 4.02
347 507 5.458015 TGATAGTAACAGCGAATATGGTCG 58.542 41.667 0.00 0.00 43.98 4.79
348 508 3.795623 AGTAACAGCGAATATGGTCGT 57.204 42.857 0.00 0.00 43.06 4.34
349 509 3.444916 AGTAACAGCGAATATGGTCGTG 58.555 45.455 0.00 0.11 43.06 4.35
350 510 1.006832 AACAGCGAATATGGTCGTGC 58.993 50.000 0.00 0.00 43.06 5.34
351 511 0.175760 ACAGCGAATATGGTCGTGCT 59.824 50.000 0.00 0.00 43.06 4.40
352 512 1.290203 CAGCGAATATGGTCGTGCTT 58.710 50.000 0.00 0.00 43.06 3.91
353 513 2.159156 ACAGCGAATATGGTCGTGCTTA 60.159 45.455 0.00 0.00 43.06 3.09
354 514 3.059884 CAGCGAATATGGTCGTGCTTAT 58.940 45.455 0.00 0.00 43.06 1.73
355 515 3.494626 CAGCGAATATGGTCGTGCTTATT 59.505 43.478 0.00 0.00 43.06 1.40
356 516 4.684242 CAGCGAATATGGTCGTGCTTATTA 59.316 41.667 0.00 0.00 43.06 0.98
357 517 4.923871 AGCGAATATGGTCGTGCTTATTAG 59.076 41.667 0.00 0.00 43.06 1.73
358 518 4.684703 GCGAATATGGTCGTGCTTATTAGT 59.315 41.667 0.00 0.00 43.06 2.24
359 519 5.164080 GCGAATATGGTCGTGCTTATTAGTC 60.164 44.000 0.00 0.00 43.06 2.59
360 520 5.918576 CGAATATGGTCGTGCTTATTAGTCA 59.081 40.000 0.00 0.00 36.26 3.41
361 521 6.419710 CGAATATGGTCGTGCTTATTAGTCAA 59.580 38.462 0.00 0.00 36.26 3.18
362 522 7.116376 CGAATATGGTCGTGCTTATTAGTCAAT 59.884 37.037 0.00 0.00 36.26 2.57
363 523 5.991328 ATGGTCGTGCTTATTAGTCAATG 57.009 39.130 0.00 0.00 0.00 2.82
364 524 4.188462 TGGTCGTGCTTATTAGTCAATGG 58.812 43.478 0.00 0.00 0.00 3.16
365 525 3.560068 GGTCGTGCTTATTAGTCAATGGG 59.440 47.826 0.00 0.00 0.00 4.00
366 526 4.439057 GTCGTGCTTATTAGTCAATGGGA 58.561 43.478 0.00 0.00 0.00 4.37
591 751 5.639506 CAGGGAATATGGTCGTGCTTATTAG 59.360 44.000 0.00 0.00 0.00 1.73
593 753 5.638234 GGGAATATGGTCGTGCTTATTAGTC 59.362 44.000 0.00 0.00 0.00 2.59
618 778 4.513442 TGGGACAAATATCTCTTTGACCG 58.487 43.478 10.39 0.00 45.71 4.79
619 779 3.877508 GGGACAAATATCTCTTTGACCGG 59.122 47.826 0.00 0.00 45.71 5.28
620 780 3.877508 GGACAAATATCTCTTTGACCGGG 59.122 47.826 6.32 0.00 39.74 5.73
621 781 3.877508 GACAAATATCTCTTTGACCGGGG 59.122 47.826 6.32 0.00 38.17 5.73
622 782 3.214328 CAAATATCTCTTTGACCGGGGG 58.786 50.000 6.32 0.00 38.17 5.40
649 1092 2.484770 GGTGCTCAACTACAAGTCCACA 60.485 50.000 0.00 0.00 0.00 4.17
650 1093 3.403038 GTGCTCAACTACAAGTCCACAT 58.597 45.455 0.00 0.00 0.00 3.21
805 1248 6.727824 AGACCACAATAAGATGAGAAAACG 57.272 37.500 0.00 0.00 0.00 3.60
806 1249 5.643777 AGACCACAATAAGATGAGAAAACGG 59.356 40.000 0.00 0.00 0.00 4.44
807 1250 5.313712 ACCACAATAAGATGAGAAAACGGT 58.686 37.500 0.00 0.00 0.00 4.83
808 1251 5.181245 ACCACAATAAGATGAGAAAACGGTG 59.819 40.000 0.00 0.00 0.00 4.94
809 1252 5.088739 CACAATAAGATGAGAAAACGGTGC 58.911 41.667 0.00 0.00 0.00 5.01
810 1253 4.156008 ACAATAAGATGAGAAAACGGTGCC 59.844 41.667 0.00 0.00 0.00 5.01
811 1254 1.534729 AAGATGAGAAAACGGTGCCC 58.465 50.000 0.00 0.00 0.00 5.36
812 1255 0.322546 AGATGAGAAAACGGTGCCCC 60.323 55.000 0.00 0.00 0.00 5.80
813 1256 0.608035 GATGAGAAAACGGTGCCCCA 60.608 55.000 0.00 0.00 0.00 4.96
814 1257 0.893727 ATGAGAAAACGGTGCCCCAC 60.894 55.000 0.00 0.00 0.00 4.61
815 1258 1.228154 GAGAAAACGGTGCCCCACT 60.228 57.895 0.00 0.00 34.40 4.00
816 1259 0.035739 GAGAAAACGGTGCCCCACTA 59.964 55.000 0.00 0.00 34.40 2.74
817 1260 0.250597 AGAAAACGGTGCCCCACTAC 60.251 55.000 0.00 0.00 34.40 2.73
818 1261 0.535553 GAAAACGGTGCCCCACTACA 60.536 55.000 0.00 0.00 34.40 2.74
819 1262 0.536460 AAAACGGTGCCCCACTACAG 60.536 55.000 0.00 0.00 34.40 2.74
820 1263 1.412453 AAACGGTGCCCCACTACAGA 61.412 55.000 0.00 0.00 34.40 3.41
821 1264 1.412453 AACGGTGCCCCACTACAGAA 61.412 55.000 0.00 0.00 34.40 3.02
822 1265 1.373435 CGGTGCCCCACTACAGAAA 59.627 57.895 0.00 0.00 34.40 2.52
823 1266 0.953960 CGGTGCCCCACTACAGAAAC 60.954 60.000 0.00 0.00 34.40 2.78
824 1267 0.400594 GGTGCCCCACTACAGAAACT 59.599 55.000 0.00 0.00 34.40 2.66
825 1268 1.626825 GGTGCCCCACTACAGAAACTA 59.373 52.381 0.00 0.00 34.40 2.24
826 1269 2.354805 GGTGCCCCACTACAGAAACTAG 60.355 54.545 0.00 0.00 34.40 2.57
827 1270 2.565834 GTGCCCCACTACAGAAACTAGA 59.434 50.000 0.00 0.00 0.00 2.43
828 1271 2.565834 TGCCCCACTACAGAAACTAGAC 59.434 50.000 0.00 0.00 0.00 2.59
829 1272 2.093606 GCCCCACTACAGAAACTAGACC 60.094 54.545 0.00 0.00 0.00 3.85
830 1273 3.170717 CCCCACTACAGAAACTAGACCA 58.829 50.000 0.00 0.00 0.00 4.02
831 1274 3.056035 CCCCACTACAGAAACTAGACCAC 60.056 52.174 0.00 0.00 0.00 4.16
832 1275 3.576982 CCCACTACAGAAACTAGACCACA 59.423 47.826 0.00 0.00 0.00 4.17
833 1276 4.039973 CCCACTACAGAAACTAGACCACAA 59.960 45.833 0.00 0.00 0.00 3.33
834 1277 5.280011 CCCACTACAGAAACTAGACCACAAT 60.280 44.000 0.00 0.00 0.00 2.71
835 1278 6.070995 CCCACTACAGAAACTAGACCACAATA 60.071 42.308 0.00 0.00 0.00 1.90
836 1279 7.383687 CCACTACAGAAACTAGACCACAATAA 58.616 38.462 0.00 0.00 0.00 1.40
837 1280 7.545965 CCACTACAGAAACTAGACCACAATAAG 59.454 40.741 0.00 0.00 0.00 1.73
838 1281 8.304596 CACTACAGAAACTAGACCACAATAAGA 58.695 37.037 0.00 0.00 0.00 2.10
839 1282 9.036980 ACTACAGAAACTAGACCACAATAAGAT 57.963 33.333 0.00 0.00 0.00 2.40
840 1283 9.307121 CTACAGAAACTAGACCACAATAAGATG 57.693 37.037 0.00 0.00 0.00 2.90
841 1284 7.907389 ACAGAAACTAGACCACAATAAGATGA 58.093 34.615 0.00 0.00 0.00 2.92
842 1285 8.037758 ACAGAAACTAGACCACAATAAGATGAG 58.962 37.037 0.00 0.00 0.00 2.90
843 1286 7.493971 CAGAAACTAGACCACAATAAGATGAGG 59.506 40.741 0.00 0.00 37.13 3.86
844 1287 7.400339 AGAAACTAGACCACAATAAGATGAGGA 59.600 37.037 0.00 0.00 35.34 3.71
845 1288 7.496346 AACTAGACCACAATAAGATGAGGAA 57.504 36.000 0.00 0.00 35.34 3.36
846 1289 7.496346 ACTAGACCACAATAAGATGAGGAAA 57.504 36.000 0.00 0.00 35.34 3.13
847 1290 7.331791 ACTAGACCACAATAAGATGAGGAAAC 58.668 38.462 0.00 0.00 35.34 2.78
1073 1528 3.748048 TGCTTCTCTCCATTCTTTGTTCG 59.252 43.478 0.00 0.00 0.00 3.95
1149 1604 1.047002 CTTTTGGTGTCCATGGCCAA 58.953 50.000 10.96 15.99 40.14 4.52
1312 1767 2.031012 CGCAGTGCAGAGGGAACA 59.969 61.111 16.83 0.00 0.00 3.18
1569 2027 6.264292 TCACAAACATAAACATAACTGCCAGT 59.736 34.615 0.00 0.00 0.00 4.00
2179 2638 3.107402 TCTGAAGCCCTATCTCACTGT 57.893 47.619 0.00 0.00 0.00 3.55
2222 2681 2.903784 ACACTGTACAGGAGGCATGTTA 59.096 45.455 26.12 0.00 32.02 2.41
2227 2686 4.575885 TGTACAGGAGGCATGTTAAGTTC 58.424 43.478 0.00 0.00 32.02 3.01
2543 3004 8.027771 GGGACAGTCTACAAAGGTATATTATCG 58.972 40.741 0.00 0.00 0.00 2.92
2549 3010 9.790389 GTCTACAAAGGTATATTATCGGATCAG 57.210 37.037 0.00 0.00 0.00 2.90
2594 3055 1.377202 GCGGGTTGATCAGAGCCAA 60.377 57.895 19.34 0.00 34.35 4.52
2726 3187 0.256752 TCATCTCCAATGGTGCCCTG 59.743 55.000 0.00 0.00 0.00 4.45
2730 3191 1.133199 TCTCCAATGGTGCCCTGTTTT 60.133 47.619 0.00 0.00 0.00 2.43
3302 3763 1.462670 GAACTTGAAGCGCTGAGAAGG 59.537 52.381 12.58 1.98 0.00 3.46
3415 3883 0.790207 GATGCGCAGTTGAGTTCGAA 59.210 50.000 18.32 0.00 0.00 3.71
3528 3999 2.284754 TTTGTGGTTATCTGGCAGCA 57.715 45.000 10.34 0.00 0.00 4.41
3563 4034 7.182206 ACCCAGAGTAGGTTTATTATGTCAGTT 59.818 37.037 0.00 0.00 32.05 3.16
3598 4077 7.979444 TTTTCTTTTTCGTATCTCTGGTCAT 57.021 32.000 0.00 0.00 0.00 3.06
3614 4093 2.169769 GGTCATCCCAACTTATCGACCA 59.830 50.000 0.00 0.00 40.90 4.02
3653 4135 4.829064 TGACTGCTAAATTTTCGCACTT 57.171 36.364 9.86 2.41 0.00 3.16
3675 4157 5.514274 TGGATTTCACCAAAACTTCAGAC 57.486 39.130 0.00 0.00 36.96 3.51
3687 4169 7.920682 ACCAAAACTTCAGACACAAATCATAAC 59.079 33.333 0.00 0.00 0.00 1.89
3696 4178 2.923020 CACAAATCATAACCGCCTTTGC 59.077 45.455 0.00 0.00 31.59 3.68
3702 4184 0.738389 ATAACCGCCTTTGCATTCGG 59.262 50.000 12.76 12.76 46.61 4.30
3727 4209 6.515531 GCCATTGTTCATTCTGAAGTCTTTCA 60.516 38.462 0.00 0.00 37.00 2.69
3761 4243 4.194640 ACGTCGTGGAGCTTAGATAGTAA 58.805 43.478 0.00 0.00 0.00 2.24
3762 4244 4.637534 ACGTCGTGGAGCTTAGATAGTAAA 59.362 41.667 0.00 0.00 0.00 2.01
3763 4245 5.124457 ACGTCGTGGAGCTTAGATAGTAAAA 59.876 40.000 0.00 0.00 0.00 1.52
3764 4246 6.183360 ACGTCGTGGAGCTTAGATAGTAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
3765 4247 6.142480 CGTCGTGGAGCTTAGATAGTAAAATG 59.858 42.308 0.00 0.00 0.00 2.32
3766 4248 5.983720 TCGTGGAGCTTAGATAGTAAAATGC 59.016 40.000 0.00 0.00 0.00 3.56
3767 4249 5.753438 CGTGGAGCTTAGATAGTAAAATGCA 59.247 40.000 0.00 0.00 0.00 3.96
3768 4250 6.074088 CGTGGAGCTTAGATAGTAAAATGCAG 60.074 42.308 0.00 0.00 0.00 4.41
3790 4339 5.008019 CAGGCTATGTGTTTGCTACCTTATG 59.992 44.000 0.00 0.00 0.00 1.90
3791 4340 4.275936 GGCTATGTGTTTGCTACCTTATGG 59.724 45.833 0.00 0.00 39.83 2.74
3792 4341 4.261197 GCTATGTGTTTGCTACCTTATGGC 60.261 45.833 0.00 0.00 36.63 4.40
3793 4342 3.147553 TGTGTTTGCTACCTTATGGCA 57.852 42.857 0.00 0.00 44.21 4.92
3794 4343 3.696045 TGTGTTTGCTACCTTATGGCAT 58.304 40.909 4.88 4.88 45.37 4.40
3809 4359 9.561069 ACCTTATGGCATATCAACTTTTACTAG 57.439 33.333 8.24 0.00 36.63 2.57
3810 4360 8.507249 CCTTATGGCATATCAACTTTTACTAGC 58.493 37.037 8.24 0.00 0.00 3.42
3811 4361 8.972458 TTATGGCATATCAACTTTTACTAGCA 57.028 30.769 8.24 0.00 0.00 3.49
3844 4403 5.121811 AGCTGCAATGATTAGTTCCACTAG 58.878 41.667 1.02 0.00 31.47 2.57
3849 4408 6.100279 TGCAATGATTAGTTCCACTAGAGGAT 59.900 38.462 9.93 0.00 37.56 3.24
3850 4409 6.426328 GCAATGATTAGTTCCACTAGAGGATG 59.574 42.308 9.93 3.35 37.56 3.51
3851 4410 6.678568 ATGATTAGTTCCACTAGAGGATGG 57.321 41.667 9.93 0.00 37.56 3.51
3852 4411 5.777449 TGATTAGTTCCACTAGAGGATGGA 58.223 41.667 9.93 2.60 43.42 3.41
3854 4413 6.846505 TGATTAGTTCCACTAGAGGATGGATT 59.153 38.462 9.93 0.79 44.49 3.01
3856 4415 8.798975 ATTAGTTCCACTAGAGGATGGATTTA 57.201 34.615 9.93 0.00 44.49 1.40
3896 4458 2.624838 CCATCTGGTTAATCCATGCCAC 59.375 50.000 0.00 0.00 46.12 5.01
3903 4465 4.018870 TGGTTAATCCATGCCACTTAGTGA 60.019 41.667 14.66 0.00 41.93 3.41
3904 4466 4.335594 GGTTAATCCATGCCACTTAGTGAC 59.664 45.833 14.66 2.20 34.06 3.67
3905 4467 5.186198 GTTAATCCATGCCACTTAGTGACT 58.814 41.667 14.66 0.00 35.23 3.41
3923 4485 4.449068 GTGACTATCTGGTTAATCCATGCG 59.551 45.833 0.00 0.00 46.12 4.73
4020 4607 3.314553 CAGAGCCATGAAACAAAGCAAG 58.685 45.455 0.00 0.00 0.00 4.01
4026 4613 3.493002 CCATGAAACAAAGCAAGCTTGGA 60.493 43.478 27.10 0.00 36.26 3.53
4070 4658 1.611519 TCCAAATCAAACACCGGGAC 58.388 50.000 6.32 0.00 0.00 4.46
4074 4662 0.887933 AATCAAACACCGGGACATGC 59.112 50.000 6.32 0.00 0.00 4.06
4075 4663 0.251121 ATCAAACACCGGGACATGCA 60.251 50.000 6.32 0.00 0.00 3.96
4076 4664 1.169661 TCAAACACCGGGACATGCAC 61.170 55.000 6.32 0.00 0.00 4.57
4077 4665 1.150536 AAACACCGGGACATGCACT 59.849 52.632 6.32 0.00 0.00 4.40
4078 4666 0.889186 AAACACCGGGACATGCACTC 60.889 55.000 6.32 0.00 0.00 3.51
4079 4667 1.768684 AACACCGGGACATGCACTCT 61.769 55.000 6.32 0.00 0.00 3.24
4080 4668 1.742880 CACCGGGACATGCACTCTG 60.743 63.158 6.32 0.00 0.00 3.35
4081 4669 1.913262 ACCGGGACATGCACTCTGA 60.913 57.895 6.32 0.00 0.00 3.27
4082 4670 1.267574 ACCGGGACATGCACTCTGAT 61.268 55.000 6.32 0.00 0.00 2.90
4083 4671 0.107508 CCGGGACATGCACTCTGATT 60.108 55.000 0.00 0.00 0.00 2.57
4084 4672 1.138859 CCGGGACATGCACTCTGATTA 59.861 52.381 0.00 0.00 0.00 1.75
4085 4673 2.224378 CCGGGACATGCACTCTGATTAT 60.224 50.000 0.00 0.00 0.00 1.28
4086 4674 3.470709 CGGGACATGCACTCTGATTATT 58.529 45.455 0.00 0.00 0.00 1.40
4087 4675 3.496130 CGGGACATGCACTCTGATTATTC 59.504 47.826 0.00 0.00 0.00 1.75
4088 4676 4.454678 GGGACATGCACTCTGATTATTCA 58.545 43.478 0.00 0.00 0.00 2.57
4110 4698 8.716646 TTCAGAATTTCAGGAAAAAGAAAACC 57.283 30.769 0.00 0.00 37.30 3.27
4111 4699 7.272244 TCAGAATTTCAGGAAAAAGAAAACCC 58.728 34.615 0.00 0.00 37.30 4.11
4112 4700 7.125659 TCAGAATTTCAGGAAAAAGAAAACCCT 59.874 33.333 0.00 0.00 37.30 4.34
4113 4701 8.421002 CAGAATTTCAGGAAAAAGAAAACCCTA 58.579 33.333 0.00 0.00 37.30 3.53
4114 4702 9.159254 AGAATTTCAGGAAAAAGAAAACCCTAT 57.841 29.630 0.00 0.00 37.30 2.57
4115 4703 9.424319 GAATTTCAGGAAAAAGAAAACCCTATC 57.576 33.333 0.00 0.00 37.30 2.08
4116 4704 6.911250 TTCAGGAAAAAGAAAACCCTATCC 57.089 37.500 0.00 0.00 0.00 2.59
4117 4705 5.959512 TCAGGAAAAAGAAAACCCTATCCA 58.040 37.500 0.00 0.00 0.00 3.41
4118 4706 6.377912 TCAGGAAAAAGAAAACCCTATCCAA 58.622 36.000 0.00 0.00 0.00 3.53
4119 4707 6.266786 TCAGGAAAAAGAAAACCCTATCCAAC 59.733 38.462 0.00 0.00 0.00 3.77
4120 4708 5.542635 AGGAAAAAGAAAACCCTATCCAACC 59.457 40.000 0.00 0.00 0.00 3.77
4121 4709 5.305902 GGAAAAAGAAAACCCTATCCAACCA 59.694 40.000 0.00 0.00 0.00 3.67
4122 4710 6.013725 GGAAAAAGAAAACCCTATCCAACCAT 60.014 38.462 0.00 0.00 0.00 3.55
4123 4711 6.605471 AAAAGAAAACCCTATCCAACCATC 57.395 37.500 0.00 0.00 0.00 3.51
4124 4712 4.946160 AGAAAACCCTATCCAACCATCA 57.054 40.909 0.00 0.00 0.00 3.07
4125 4713 4.600062 AGAAAACCCTATCCAACCATCAC 58.400 43.478 0.00 0.00 0.00 3.06
4126 4714 4.292306 AGAAAACCCTATCCAACCATCACT 59.708 41.667 0.00 0.00 0.00 3.41
4127 4715 3.933861 AACCCTATCCAACCATCACTC 57.066 47.619 0.00 0.00 0.00 3.51
4128 4716 3.136641 ACCCTATCCAACCATCACTCT 57.863 47.619 0.00 0.00 0.00 3.24
4129 4717 3.464828 ACCCTATCCAACCATCACTCTT 58.535 45.455 0.00 0.00 0.00 2.85
4130 4718 3.200825 ACCCTATCCAACCATCACTCTTG 59.799 47.826 0.00 0.00 0.00 3.02
4147 4735 8.902540 TCACTCTTGTACAATTATTTGTCTGT 57.097 30.769 9.13 0.00 42.43 3.41
4149 4737 7.952101 CACTCTTGTACAATTATTTGTCTGTCG 59.048 37.037 9.13 0.00 42.43 4.35
4158 4746 0.456142 TTTGTCTGTCGCCTCGATCG 60.456 55.000 9.36 9.36 38.42 3.69
4165 4753 3.283684 CGCCTCGATCGAGCTCCT 61.284 66.667 34.54 0.00 40.69 3.69
4166 4754 2.334653 GCCTCGATCGAGCTCCTG 59.665 66.667 34.54 22.95 40.69 3.86
4167 4755 2.190170 GCCTCGATCGAGCTCCTGA 61.190 63.158 34.54 4.13 40.69 3.86
4169 4757 0.030101 CCTCGATCGAGCTCCTGAAC 59.970 60.000 34.54 0.00 40.69 3.18
4174 4762 1.656095 GATCGAGCTCCTGAACAAACG 59.344 52.381 8.47 0.00 0.00 3.60
4184 4772 2.607771 CCTGAACAAACGCATTTCCTGG 60.608 50.000 0.00 0.00 0.00 4.45
4195 4783 3.431346 CGCATTTCCTGGAGATGAAGAGA 60.431 47.826 26.39 0.00 0.00 3.10
4199 4787 3.113191 TCCTGGAGATGAAGAGAAGCT 57.887 47.619 0.00 0.00 0.00 3.74
4218 4806 0.739462 TAGTCCGCATCTGCAAACCG 60.739 55.000 2.72 0.00 42.21 4.44
4234 4822 2.509052 ACCGACGTACATCATGGATG 57.491 50.000 4.74 4.74 44.71 3.51
4245 4833 2.928801 TCATGGATGTAATGGACGGG 57.071 50.000 0.00 0.00 0.00 5.28
4246 4834 2.123589 TCATGGATGTAATGGACGGGT 58.876 47.619 0.00 0.00 0.00 5.28
4251 4839 3.971305 TGGATGTAATGGACGGGTTATCT 59.029 43.478 0.00 0.00 0.00 1.98
4259 4847 5.888982 ATGGACGGGTTATCTGAAACTAT 57.111 39.130 0.00 0.00 0.00 2.12
4267 4855 7.332678 ACGGGTTATCTGAAACTATTTGTACAC 59.667 37.037 0.00 0.00 0.00 2.90
4288 4876 6.931838 ACACGAGATGAGGTGAATTACTAAA 58.068 36.000 0.00 0.00 37.58 1.85
4304 4892 9.974750 GAATTACTAAAGATATATTCAAGGCGC 57.025 33.333 0.00 0.00 0.00 6.53
4310 4898 4.327680 AGATATATTCAAGGCGCTTTCCC 58.672 43.478 7.64 0.00 0.00 3.97
4371 4964 5.238214 GGATACTAAATGCTTGAAGCTCAGG 59.762 44.000 18.94 7.35 42.97 3.86
4381 4974 4.825422 CTTGAAGCTCAGGTAATCAGTGA 58.175 43.478 0.00 0.00 0.00 3.41
4382 4975 5.426504 CTTGAAGCTCAGGTAATCAGTGAT 58.573 41.667 0.00 0.00 0.00 3.06
4383 4976 4.763073 TGAAGCTCAGGTAATCAGTGATG 58.237 43.478 6.34 0.00 0.00 3.07
4384 4977 3.834489 AGCTCAGGTAATCAGTGATGG 57.166 47.619 6.34 0.00 0.00 3.51
4385 4978 3.378512 AGCTCAGGTAATCAGTGATGGA 58.621 45.455 6.34 0.00 0.00 3.41
4386 4979 3.776969 AGCTCAGGTAATCAGTGATGGAA 59.223 43.478 6.34 0.00 0.00 3.53
4387 4980 3.873952 GCTCAGGTAATCAGTGATGGAAC 59.126 47.826 6.34 5.75 0.00 3.62
4388 4981 4.115516 CTCAGGTAATCAGTGATGGAACG 58.884 47.826 6.34 0.00 0.00 3.95
4389 4982 3.118775 TCAGGTAATCAGTGATGGAACGG 60.119 47.826 6.34 1.93 0.00 4.44
4390 4983 3.104512 AGGTAATCAGTGATGGAACGGA 58.895 45.455 6.34 0.00 0.00 4.69
4391 4984 3.711704 AGGTAATCAGTGATGGAACGGAT 59.288 43.478 6.34 0.00 36.68 4.18
4392 4985 4.164221 AGGTAATCAGTGATGGAACGGATT 59.836 41.667 6.34 7.62 44.01 3.01
4393 4986 4.511826 GGTAATCAGTGATGGAACGGATTC 59.488 45.833 6.34 0.80 41.87 2.52
4394 4987 2.293677 TCAGTGATGGAACGGATTCG 57.706 50.000 0.00 0.00 43.02 3.34
4395 4988 0.652592 CAGTGATGGAACGGATTCGC 59.347 55.000 0.00 0.00 40.63 4.70
4396 4989 0.537188 AGTGATGGAACGGATTCGCT 59.463 50.000 0.00 0.00 40.63 4.93
4397 4990 0.931005 GTGATGGAACGGATTCGCTC 59.069 55.000 0.00 0.00 40.63 5.03
4406 4999 3.967886 GGATTCGCTCCGATCTGAA 57.032 52.632 0.00 0.00 35.23 3.02
4407 5000 2.447244 GGATTCGCTCCGATCTGAAT 57.553 50.000 0.00 0.00 35.23 2.57
4408 5001 2.760374 GGATTCGCTCCGATCTGAATT 58.240 47.619 0.00 0.00 35.23 2.17
4409 5002 3.914312 GGATTCGCTCCGATCTGAATTA 58.086 45.455 0.00 0.00 35.23 1.40
4410 5003 4.307432 GGATTCGCTCCGATCTGAATTAA 58.693 43.478 0.00 0.00 35.23 1.40
4411 5004 4.932200 GGATTCGCTCCGATCTGAATTAAT 59.068 41.667 0.00 0.00 35.23 1.40
4412 5005 5.409826 GGATTCGCTCCGATCTGAATTAATT 59.590 40.000 0.00 0.00 35.23 1.40
4413 5006 5.657470 TTCGCTCCGATCTGAATTAATTG 57.343 39.130 5.17 0.00 35.23 2.32
4414 5007 4.944048 TCGCTCCGATCTGAATTAATTGA 58.056 39.130 5.17 0.00 0.00 2.57
4415 5008 4.745125 TCGCTCCGATCTGAATTAATTGAC 59.255 41.667 5.17 0.00 0.00 3.18
4416 5009 4.507756 CGCTCCGATCTGAATTAATTGACA 59.492 41.667 5.17 0.00 0.00 3.58
4417 5010 5.557136 CGCTCCGATCTGAATTAATTGACAC 60.557 44.000 5.17 0.00 0.00 3.67
4418 5011 5.294306 GCTCCGATCTGAATTAATTGACACA 59.706 40.000 5.17 0.00 0.00 3.72
4419 5012 6.510799 GCTCCGATCTGAATTAATTGACACAG 60.511 42.308 5.17 6.83 0.00 3.66
4420 5013 6.639563 TCCGATCTGAATTAATTGACACAGA 58.360 36.000 15.68 15.68 38.44 3.41
4421 5014 6.535150 TCCGATCTGAATTAATTGACACAGAC 59.465 38.462 15.66 10.70 37.24 3.51
4422 5015 6.313658 CCGATCTGAATTAATTGACACAGACA 59.686 38.462 15.66 1.93 37.24 3.41
4423 5016 7.011763 CCGATCTGAATTAATTGACACAGACAT 59.988 37.037 15.66 5.42 37.24 3.06
4424 5017 7.849515 CGATCTGAATTAATTGACACAGACATG 59.150 37.037 15.66 8.04 37.24 3.21
4425 5018 7.381766 TCTGAATTAATTGACACAGACATGG 57.618 36.000 5.17 0.00 31.02 3.66
4426 5019 6.942005 TCTGAATTAATTGACACAGACATGGT 59.058 34.615 5.17 0.00 31.02 3.55
4427 5020 8.100164 TCTGAATTAATTGACACAGACATGGTA 58.900 33.333 5.17 0.00 31.02 3.25
4428 5021 8.806429 TGAATTAATTGACACAGACATGGTAT 57.194 30.769 5.17 0.00 0.00 2.73
4429 5022 9.898152 TGAATTAATTGACACAGACATGGTATA 57.102 29.630 5.17 0.00 0.00 1.47
4432 5025 9.770097 ATTAATTGACACAGACATGGTATAGAG 57.230 33.333 0.00 0.00 0.00 2.43
4433 5026 5.598416 TTGACACAGACATGGTATAGAGG 57.402 43.478 0.00 0.00 0.00 3.69
4434 5027 3.384789 TGACACAGACATGGTATAGAGGC 59.615 47.826 0.00 0.00 0.00 4.70
4435 5028 3.639094 GACACAGACATGGTATAGAGGCT 59.361 47.826 0.00 0.00 0.00 4.58
4436 5029 3.386078 ACACAGACATGGTATAGAGGCTG 59.614 47.826 0.00 0.00 0.00 4.85
4437 5030 2.366916 ACAGACATGGTATAGAGGCTGC 59.633 50.000 0.00 0.00 0.00 5.25
4438 5031 1.615883 AGACATGGTATAGAGGCTGCG 59.384 52.381 0.00 0.00 0.00 5.18
4439 5032 1.341531 GACATGGTATAGAGGCTGCGT 59.658 52.381 0.00 0.00 0.00 5.24
4440 5033 1.341531 ACATGGTATAGAGGCTGCGTC 59.658 52.381 14.08 14.08 0.00 5.19
4441 5034 1.341209 CATGGTATAGAGGCTGCGTCA 59.659 52.381 22.55 10.28 0.00 4.35
4442 5035 1.480789 TGGTATAGAGGCTGCGTCAA 58.519 50.000 22.55 6.55 0.00 3.18
4443 5036 2.039418 TGGTATAGAGGCTGCGTCAAT 58.961 47.619 22.55 7.16 0.00 2.57
4444 5037 2.434336 TGGTATAGAGGCTGCGTCAATT 59.566 45.455 22.55 10.17 0.00 2.32
4445 5038 3.639561 TGGTATAGAGGCTGCGTCAATTA 59.360 43.478 22.55 8.40 0.00 1.40
4446 5039 4.100344 TGGTATAGAGGCTGCGTCAATTAA 59.900 41.667 22.55 4.83 0.00 1.40
4447 5040 5.221641 TGGTATAGAGGCTGCGTCAATTAAT 60.222 40.000 22.55 10.81 0.00 1.40
4448 5041 5.701290 GGTATAGAGGCTGCGTCAATTAATT 59.299 40.000 22.55 0.00 0.00 1.40
4449 5042 5.931441 ATAGAGGCTGCGTCAATTAATTC 57.069 39.130 22.55 0.00 0.00 2.17
4450 5043 2.609459 AGAGGCTGCGTCAATTAATTCG 59.391 45.455 22.55 1.34 0.00 3.34
4451 5044 1.670811 AGGCTGCGTCAATTAATTCGG 59.329 47.619 10.27 1.47 0.00 4.30
4452 5045 1.668751 GGCTGCGTCAATTAATTCGGA 59.331 47.619 10.27 7.20 0.00 4.55
4453 5046 2.290641 GGCTGCGTCAATTAATTCGGAT 59.709 45.455 10.27 0.00 0.00 4.18
4454 5047 3.545633 GCTGCGTCAATTAATTCGGATC 58.454 45.455 10.27 1.51 0.00 3.36
4455 5048 3.787826 CTGCGTCAATTAATTCGGATCG 58.212 45.455 10.27 8.04 0.00 3.69
4456 5049 2.542178 TGCGTCAATTAATTCGGATCGG 59.458 45.455 10.27 0.00 0.00 4.18
4457 5050 2.798283 GCGTCAATTAATTCGGATCGGA 59.202 45.455 10.27 0.00 0.00 4.55
4458 5051 3.120991 GCGTCAATTAATTCGGATCGGAG 60.121 47.826 10.27 0.00 0.00 4.63
4459 5052 4.295870 CGTCAATTAATTCGGATCGGAGA 58.704 43.478 0.00 0.00 45.75 3.71
4460 5053 4.383052 CGTCAATTAATTCGGATCGGAGAG 59.617 45.833 0.00 0.00 43.63 3.20
4461 5054 5.529791 GTCAATTAATTCGGATCGGAGAGA 58.470 41.667 0.00 0.00 43.63 3.10
4462 5055 5.631512 GTCAATTAATTCGGATCGGAGAGAG 59.368 44.000 0.00 0.00 43.63 3.20
4463 5056 5.302059 TCAATTAATTCGGATCGGAGAGAGT 59.698 40.000 0.00 0.00 43.63 3.24
4464 5057 6.489022 TCAATTAATTCGGATCGGAGAGAGTA 59.511 38.462 0.00 0.00 43.63 2.59
4465 5058 7.176865 TCAATTAATTCGGATCGGAGAGAGTAT 59.823 37.037 0.00 0.00 43.63 2.12
4466 5059 4.775058 AATTCGGATCGGAGAGAGTATG 57.225 45.455 2.99 0.00 43.63 2.39
4467 5060 2.932855 TCGGATCGGAGAGAGTATGT 57.067 50.000 0.00 0.00 43.63 2.29
4468 5061 3.210232 TCGGATCGGAGAGAGTATGTT 57.790 47.619 0.00 0.00 43.63 2.71
4469 5062 4.347360 TCGGATCGGAGAGAGTATGTTA 57.653 45.455 0.00 0.00 43.63 2.41
4470 5063 4.907809 TCGGATCGGAGAGAGTATGTTAT 58.092 43.478 0.00 0.00 43.63 1.89
4471 5064 5.314529 TCGGATCGGAGAGAGTATGTTATT 58.685 41.667 0.00 0.00 43.63 1.40
4472 5065 5.768662 TCGGATCGGAGAGAGTATGTTATTT 59.231 40.000 0.00 0.00 43.63 1.40
4473 5066 6.264744 TCGGATCGGAGAGAGTATGTTATTTT 59.735 38.462 0.00 0.00 43.63 1.82
4474 5067 6.363626 CGGATCGGAGAGAGTATGTTATTTTG 59.636 42.308 0.00 0.00 43.63 2.44
4475 5068 6.146347 GGATCGGAGAGAGTATGTTATTTTGC 59.854 42.308 0.00 0.00 43.63 3.68
4476 5069 5.972935 TCGGAGAGAGTATGTTATTTTGCA 58.027 37.500 0.00 0.00 0.00 4.08
4477 5070 6.403049 TCGGAGAGAGTATGTTATTTTGCAA 58.597 36.000 0.00 0.00 0.00 4.08
4478 5071 7.047891 TCGGAGAGAGTATGTTATTTTGCAAT 58.952 34.615 0.00 0.00 0.00 3.56
4479 5072 7.011389 TCGGAGAGAGTATGTTATTTTGCAATG 59.989 37.037 0.00 0.00 0.00 2.82
4480 5073 7.011389 CGGAGAGAGTATGTTATTTTGCAATGA 59.989 37.037 0.00 0.00 0.00 2.57
4481 5074 8.677300 GGAGAGAGTATGTTATTTTGCAATGAA 58.323 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.331193 GTCGATGTCTGAACCTAAACAATAACT 59.669 37.037 0.00 0.00 0.00 2.24
33 34 3.589988 GATTCACCAGTTCAGTCGATGT 58.410 45.455 0.00 0.00 0.00 3.06
209 215 6.183360 GGCCATTGTCTGTACATATATGCATC 60.183 42.308 12.79 4.36 34.97 3.91
213 219 5.122869 GCTGGCCATTGTCTGTACATATATG 59.877 44.000 5.51 11.29 34.97 1.78
230 363 1.545582 GATGCTTTAAACTGCTGGCCA 59.454 47.619 4.71 4.71 0.00 5.36
261 394 3.575399 GCTTCAAGCAAACACTGGG 57.425 52.632 3.89 0.00 41.89 4.45
320 480 8.311650 ACCATATTCGCTGTTACTATCATTTC 57.688 34.615 0.00 0.00 0.00 2.17
329 489 2.034001 GCACGACCATATTCGCTGTTAC 60.034 50.000 0.00 0.00 43.06 2.50
330 490 2.159156 AGCACGACCATATTCGCTGTTA 60.159 45.455 0.00 0.00 43.06 2.41
331 491 1.006832 GCACGACCATATTCGCTGTT 58.993 50.000 0.00 0.00 43.06 3.16
332 492 0.175760 AGCACGACCATATTCGCTGT 59.824 50.000 0.00 0.00 43.06 4.40
333 493 1.290203 AAGCACGACCATATTCGCTG 58.710 50.000 0.00 0.00 43.06 5.18
334 494 2.882927 TAAGCACGACCATATTCGCT 57.117 45.000 0.00 0.00 43.06 4.93
335 495 4.684703 ACTAATAAGCACGACCATATTCGC 59.315 41.667 0.00 0.00 43.06 4.70
336 496 5.918576 TGACTAATAAGCACGACCATATTCG 59.081 40.000 0.00 0.00 44.87 3.34
337 497 7.709269 TTGACTAATAAGCACGACCATATTC 57.291 36.000 0.00 0.00 0.00 1.75
338 498 7.173218 CCATTGACTAATAAGCACGACCATATT 59.827 37.037 0.00 0.00 0.00 1.28
339 499 6.650807 CCATTGACTAATAAGCACGACCATAT 59.349 38.462 0.00 0.00 0.00 1.78
340 500 5.989168 CCATTGACTAATAAGCACGACCATA 59.011 40.000 0.00 0.00 0.00 2.74
341 501 4.816385 CCATTGACTAATAAGCACGACCAT 59.184 41.667 0.00 0.00 0.00 3.55
342 502 4.188462 CCATTGACTAATAAGCACGACCA 58.812 43.478 0.00 0.00 0.00 4.02
343 503 3.560068 CCCATTGACTAATAAGCACGACC 59.440 47.826 0.00 0.00 0.00 4.79
344 504 4.439057 TCCCATTGACTAATAAGCACGAC 58.561 43.478 0.00 0.00 0.00 4.34
345 505 4.746535 TCCCATTGACTAATAAGCACGA 57.253 40.909 0.00 0.00 0.00 4.35
554 714 9.574516 GACCATATTCCCTGTTACTATCATTTT 57.425 33.333 0.00 0.00 0.00 1.82
555 715 7.878127 CGACCATATTCCCTGTTACTATCATTT 59.122 37.037 0.00 0.00 0.00 2.32
556 716 7.016268 ACGACCATATTCCCTGTTACTATCATT 59.984 37.037 0.00 0.00 0.00 2.57
557 717 6.497259 ACGACCATATTCCCTGTTACTATCAT 59.503 38.462 0.00 0.00 0.00 2.45
558 718 5.836898 ACGACCATATTCCCTGTTACTATCA 59.163 40.000 0.00 0.00 0.00 2.15
559 719 6.157211 CACGACCATATTCCCTGTTACTATC 58.843 44.000 0.00 0.00 0.00 2.08
560 720 5.510861 GCACGACCATATTCCCTGTTACTAT 60.511 44.000 0.00 0.00 0.00 2.12
561 721 4.202182 GCACGACCATATTCCCTGTTACTA 60.202 45.833 0.00 0.00 0.00 1.82
562 722 3.431766 GCACGACCATATTCCCTGTTACT 60.432 47.826 0.00 0.00 0.00 2.24
591 751 7.415653 GGTCAAAGAGATATTTGTCCCATTGAC 60.416 40.741 0.00 0.00 40.39 3.18
593 753 6.458751 CGGTCAAAGAGATATTTGTCCCATTG 60.459 42.308 9.55 0.00 42.07 2.82
628 788 2.143925 GTGGACTTGTAGTTGAGCACC 58.856 52.381 0.00 0.00 0.00 5.01
633 1076 4.679639 GCCGATATGTGGACTTGTAGTTGA 60.680 45.833 0.00 0.00 0.00 3.18
649 1092 4.564041 CTTCAGCTAAGATGTGCCGATAT 58.436 43.478 0.00 0.00 37.38 1.63
650 1093 3.800261 GCTTCAGCTAAGATGTGCCGATA 60.800 47.826 7.00 0.00 37.38 2.92
682 1125 1.876156 GAGACTCACAGCCACAAAAGG 59.124 52.381 0.00 0.00 0.00 3.11
806 1249 2.565834 TCTAGTTTCTGTAGTGGGGCAC 59.434 50.000 0.00 0.00 34.10 5.01
807 1250 2.565834 GTCTAGTTTCTGTAGTGGGGCA 59.434 50.000 0.00 0.00 0.00 5.36
808 1251 2.093606 GGTCTAGTTTCTGTAGTGGGGC 60.094 54.545 0.00 0.00 0.00 5.80
809 1252 3.056035 GTGGTCTAGTTTCTGTAGTGGGG 60.056 52.174 0.00 0.00 0.00 4.96
810 1253 3.576982 TGTGGTCTAGTTTCTGTAGTGGG 59.423 47.826 0.00 0.00 0.00 4.61
811 1254 4.866508 TGTGGTCTAGTTTCTGTAGTGG 57.133 45.455 0.00 0.00 0.00 4.00
812 1255 8.304596 TCTTATTGTGGTCTAGTTTCTGTAGTG 58.695 37.037 0.00 0.00 0.00 2.74
813 1256 8.418597 TCTTATTGTGGTCTAGTTTCTGTAGT 57.581 34.615 0.00 0.00 0.00 2.73
814 1257 9.307121 CATCTTATTGTGGTCTAGTTTCTGTAG 57.693 37.037 0.00 0.00 0.00 2.74
815 1258 9.031537 TCATCTTATTGTGGTCTAGTTTCTGTA 57.968 33.333 0.00 0.00 0.00 2.74
816 1259 7.907389 TCATCTTATTGTGGTCTAGTTTCTGT 58.093 34.615 0.00 0.00 0.00 3.41
817 1260 7.493971 CCTCATCTTATTGTGGTCTAGTTTCTG 59.506 40.741 0.00 0.00 0.00 3.02
818 1261 7.400339 TCCTCATCTTATTGTGGTCTAGTTTCT 59.600 37.037 0.00 0.00 33.10 2.52
819 1262 7.556844 TCCTCATCTTATTGTGGTCTAGTTTC 58.443 38.462 0.00 0.00 33.10 2.78
820 1263 7.496346 TCCTCATCTTATTGTGGTCTAGTTT 57.504 36.000 0.00 0.00 33.10 2.66
821 1264 7.496346 TTCCTCATCTTATTGTGGTCTAGTT 57.504 36.000 0.00 0.00 33.10 2.24
822 1265 7.331791 GTTTCCTCATCTTATTGTGGTCTAGT 58.668 38.462 0.00 0.00 33.10 2.57
823 1266 6.477033 CGTTTCCTCATCTTATTGTGGTCTAG 59.523 42.308 0.00 0.00 33.10 2.43
824 1267 6.153851 TCGTTTCCTCATCTTATTGTGGTCTA 59.846 38.462 0.00 0.00 33.10 2.59
825 1268 5.046591 TCGTTTCCTCATCTTATTGTGGTCT 60.047 40.000 0.00 0.00 33.10 3.85
826 1269 5.175859 TCGTTTCCTCATCTTATTGTGGTC 58.824 41.667 0.00 0.00 33.10 4.02
827 1270 5.160607 TCGTTTCCTCATCTTATTGTGGT 57.839 39.130 0.00 0.00 33.10 4.16
828 1271 5.504665 GCATCGTTTCCTCATCTTATTGTGG 60.505 44.000 0.00 0.00 0.00 4.17
829 1272 5.504665 GGCATCGTTTCCTCATCTTATTGTG 60.505 44.000 0.00 0.00 0.00 3.33
830 1273 4.576463 GGCATCGTTTCCTCATCTTATTGT 59.424 41.667 0.00 0.00 0.00 2.71
831 1274 4.023707 GGGCATCGTTTCCTCATCTTATTG 60.024 45.833 0.00 0.00 0.00 1.90
832 1275 4.137543 GGGCATCGTTTCCTCATCTTATT 58.862 43.478 0.00 0.00 0.00 1.40
833 1276 3.496870 GGGGCATCGTTTCCTCATCTTAT 60.497 47.826 0.00 0.00 0.00 1.73
834 1277 2.158813 GGGGCATCGTTTCCTCATCTTA 60.159 50.000 0.00 0.00 0.00 2.10
835 1278 1.408822 GGGGCATCGTTTCCTCATCTT 60.409 52.381 0.00 0.00 0.00 2.40
836 1279 0.181350 GGGGCATCGTTTCCTCATCT 59.819 55.000 0.00 0.00 0.00 2.90
837 1280 0.107214 TGGGGCATCGTTTCCTCATC 60.107 55.000 0.00 0.00 0.00 2.92
838 1281 0.107017 CTGGGGCATCGTTTCCTCAT 60.107 55.000 0.00 0.00 31.39 2.90
839 1282 1.299648 CTGGGGCATCGTTTCCTCA 59.700 57.895 0.00 0.00 0.00 3.86
840 1283 0.539986 TACTGGGGCATCGTTTCCTC 59.460 55.000 0.00 0.00 0.00 3.71
841 1284 1.213296 ATACTGGGGCATCGTTTCCT 58.787 50.000 0.00 0.00 0.00 3.36
842 1285 1.676006 CAATACTGGGGCATCGTTTCC 59.324 52.381 0.00 0.00 0.00 3.13
843 1286 2.354821 GACAATACTGGGGCATCGTTTC 59.645 50.000 0.00 0.00 0.00 2.78
844 1287 2.365582 GACAATACTGGGGCATCGTTT 58.634 47.619 0.00 0.00 0.00 3.60
845 1288 1.408266 GGACAATACTGGGGCATCGTT 60.408 52.381 0.00 0.00 0.00 3.85
846 1289 0.180406 GGACAATACTGGGGCATCGT 59.820 55.000 0.00 0.00 0.00 3.73
847 1290 0.469917 AGGACAATACTGGGGCATCG 59.530 55.000 0.00 0.00 0.00 3.84
1149 1604 4.682714 TGAGCTGGGGAGGGGCTT 62.683 66.667 0.00 0.00 0.00 4.35
1312 1767 2.641305 CTCAAGGCTGAAGCTAGCAAT 58.359 47.619 18.83 4.93 45.46 3.56
1569 2027 5.105187 ACATGCTGAAGTATACTTGCTGAGA 60.105 40.000 22.68 5.65 36.11 3.27
1842 2300 2.044946 CCAGGCCCTTGCAGGTAC 60.045 66.667 0.00 0.00 40.13 3.34
2179 2638 4.517952 AAACATCCATCGCATGACAAAA 57.482 36.364 0.00 0.00 0.00 2.44
2222 2681 5.957842 TTGGTCAAGCATTAATCGAACTT 57.042 34.783 0.00 0.00 0.00 2.66
2543 3004 1.204941 ACTGCTACAACCGTCTGATCC 59.795 52.381 0.00 0.00 0.00 3.36
2549 3010 2.223377 CCTTTTGACTGCTACAACCGTC 59.777 50.000 0.00 0.00 0.00 4.79
2594 3055 3.005554 CTCATTCACGAATTGCTCCACT 58.994 45.455 0.00 0.00 0.00 4.00
2730 3191 7.017452 TGGGATTGATGTATTGTGGAGATGATA 59.983 37.037 0.00 0.00 0.00 2.15
3302 3763 3.058639 GGACAGAGTGTTGTTTCATCAGC 60.059 47.826 0.00 0.00 0.00 4.26
3415 3883 2.112998 CCTTGGCAATTCCATCATGGT 58.887 47.619 2.79 0.00 46.04 3.55
3528 3999 4.143406 ACCTACTCTGGGTTTCTACCTT 57.857 45.455 0.00 0.00 44.38 3.50
3574 4045 7.119262 GGATGACCAGAGATACGAAAAAGAAAA 59.881 37.037 0.00 0.00 35.97 2.29
3575 4046 6.594159 GGATGACCAGAGATACGAAAAAGAAA 59.406 38.462 0.00 0.00 35.97 2.52
3578 4049 4.811557 GGGATGACCAGAGATACGAAAAAG 59.188 45.833 0.00 0.00 39.85 2.27
3598 4077 3.071892 ACAAACTGGTCGATAAGTTGGGA 59.928 43.478 17.24 0.00 36.75 4.37
3653 4135 4.952957 TGTCTGAAGTTTTGGTGAAATCCA 59.047 37.500 0.00 0.00 35.49 3.41
3675 4157 2.923020 GCAAAGGCGGTTATGATTTGTG 59.077 45.455 0.00 0.00 34.22 3.33
3696 4178 3.129113 TCAGAATGAACAATGGCCGAATG 59.871 43.478 0.00 0.00 45.97 2.67
3727 4209 3.852286 TCCACGACGTATTTATGCAAGT 58.148 40.909 0.00 0.00 0.00 3.16
3761 4243 2.564062 AGCAAACACATAGCCTGCATTT 59.436 40.909 0.00 0.00 35.44 2.32
3762 4244 2.173519 AGCAAACACATAGCCTGCATT 58.826 42.857 0.00 0.00 35.44 3.56
3763 4245 1.843368 AGCAAACACATAGCCTGCAT 58.157 45.000 0.00 0.00 35.44 3.96
3764 4246 2.083774 GTAGCAAACACATAGCCTGCA 58.916 47.619 0.00 0.00 35.44 4.41
3765 4247 1.401905 GGTAGCAAACACATAGCCTGC 59.598 52.381 0.00 0.00 0.00 4.85
3766 4248 2.991250 AGGTAGCAAACACATAGCCTG 58.009 47.619 0.00 0.00 0.00 4.85
3767 4249 3.721087 AAGGTAGCAAACACATAGCCT 57.279 42.857 0.00 0.00 0.00 4.58
3768 4250 4.275936 CCATAAGGTAGCAAACACATAGCC 59.724 45.833 0.00 0.00 0.00 3.93
3790 4339 7.495934 TCTTCTGCTAGTAAAAGTTGATATGCC 59.504 37.037 0.00 0.00 0.00 4.40
3791 4340 8.425577 TCTTCTGCTAGTAAAAGTTGATATGC 57.574 34.615 0.00 0.00 0.00 3.14
3792 4341 9.809096 TCTCTTCTGCTAGTAAAAGTTGATATG 57.191 33.333 0.00 0.00 0.00 1.78
3810 4360 6.621316 AATCATTGCAGCTTATCTCTTCTG 57.379 37.500 0.00 0.00 0.00 3.02
3811 4361 7.507829 ACTAATCATTGCAGCTTATCTCTTCT 58.492 34.615 0.00 0.00 0.00 2.85
3851 4410 8.044908 TGGTTACTAAGTGACAGGGATTAAATC 58.955 37.037 0.00 0.00 0.00 2.17
3852 4411 7.924541 TGGTTACTAAGTGACAGGGATTAAAT 58.075 34.615 0.00 0.00 0.00 1.40
3854 4413 6.938698 TGGTTACTAAGTGACAGGGATTAA 57.061 37.500 0.00 0.00 0.00 1.40
3856 4415 5.726793 AGATGGTTACTAAGTGACAGGGATT 59.273 40.000 0.00 0.00 0.00 3.01
3983 4570 9.639563 TCATGGCTCTGGATTTGTAATTTTATA 57.360 29.630 0.00 0.00 0.00 0.98
3984 4571 8.537728 TCATGGCTCTGGATTTGTAATTTTAT 57.462 30.769 0.00 0.00 0.00 1.40
3989 4576 5.716228 TGTTTCATGGCTCTGGATTTGTAAT 59.284 36.000 0.00 0.00 0.00 1.89
3992 4579 3.499338 TGTTTCATGGCTCTGGATTTGT 58.501 40.909 0.00 0.00 0.00 2.83
3998 4585 1.614903 TGCTTTGTTTCATGGCTCTGG 59.385 47.619 0.00 0.00 0.00 3.86
4020 4607 4.321452 TCAAATCATGAACTGCTTCCAAGC 60.321 41.667 0.00 4.23 43.12 4.01
4039 4626 7.710475 GGTGTTTGATTTGGATCTTCTTTCAAA 59.290 33.333 0.00 0.64 34.28 2.69
4041 4628 6.514870 CGGTGTTTGATTTGGATCTTCTTTCA 60.515 38.462 0.00 0.00 33.28 2.69
4042 4629 5.858581 CGGTGTTTGATTTGGATCTTCTTTC 59.141 40.000 0.00 0.00 33.28 2.62
4058 4646 1.172180 AGTGCATGTCCCGGTGTTTG 61.172 55.000 0.00 0.00 0.00 2.93
4084 4672 9.330063 GGTTTTCTTTTTCCTGAAATTCTGAAT 57.670 29.630 0.00 0.00 33.04 2.57
4085 4673 7.768582 GGGTTTTCTTTTTCCTGAAATTCTGAA 59.231 33.333 1.26 0.00 33.04 3.02
4086 4674 7.125659 AGGGTTTTCTTTTTCCTGAAATTCTGA 59.874 33.333 1.26 0.00 33.04 3.27
4087 4675 7.275183 AGGGTTTTCTTTTTCCTGAAATTCTG 58.725 34.615 0.00 0.00 33.04 3.02
4088 4676 7.437713 AGGGTTTTCTTTTTCCTGAAATTCT 57.562 32.000 0.00 0.00 33.04 2.40
4089 4677 9.424319 GATAGGGTTTTCTTTTTCCTGAAATTC 57.576 33.333 0.00 0.00 33.04 2.17
4090 4678 8.375506 GGATAGGGTTTTCTTTTTCCTGAAATT 58.624 33.333 0.00 0.00 33.04 1.82
4091 4679 7.512402 TGGATAGGGTTTTCTTTTTCCTGAAAT 59.488 33.333 0.00 0.00 33.04 2.17
4092 4680 6.841755 TGGATAGGGTTTTCTTTTTCCTGAAA 59.158 34.615 0.00 0.00 0.00 2.69
4093 4681 6.377912 TGGATAGGGTTTTCTTTTTCCTGAA 58.622 36.000 0.00 0.00 0.00 3.02
4094 4682 5.959512 TGGATAGGGTTTTCTTTTTCCTGA 58.040 37.500 0.00 0.00 0.00 3.86
4095 4683 6.455647 GTTGGATAGGGTTTTCTTTTTCCTG 58.544 40.000 0.00 0.00 0.00 3.86
4096 4684 5.542635 GGTTGGATAGGGTTTTCTTTTTCCT 59.457 40.000 0.00 0.00 0.00 3.36
4097 4685 5.305902 TGGTTGGATAGGGTTTTCTTTTTCC 59.694 40.000 0.00 0.00 0.00 3.13
4098 4686 6.413783 TGGTTGGATAGGGTTTTCTTTTTC 57.586 37.500 0.00 0.00 0.00 2.29
4099 4687 6.556874 TGATGGTTGGATAGGGTTTTCTTTTT 59.443 34.615 0.00 0.00 0.00 1.94
4100 4688 6.014584 GTGATGGTTGGATAGGGTTTTCTTTT 60.015 38.462 0.00 0.00 0.00 2.27
4101 4689 5.480422 GTGATGGTTGGATAGGGTTTTCTTT 59.520 40.000 0.00 0.00 0.00 2.52
4102 4690 5.016831 GTGATGGTTGGATAGGGTTTTCTT 58.983 41.667 0.00 0.00 0.00 2.52
4103 4691 4.292306 AGTGATGGTTGGATAGGGTTTTCT 59.708 41.667 0.00 0.00 0.00 2.52
4104 4692 4.600062 AGTGATGGTTGGATAGGGTTTTC 58.400 43.478 0.00 0.00 0.00 2.29
4105 4693 4.292306 AGAGTGATGGTTGGATAGGGTTTT 59.708 41.667 0.00 0.00 0.00 2.43
4106 4694 3.852578 AGAGTGATGGTTGGATAGGGTTT 59.147 43.478 0.00 0.00 0.00 3.27
4107 4695 3.464828 AGAGTGATGGTTGGATAGGGTT 58.535 45.455 0.00 0.00 0.00 4.11
4108 4696 3.136641 AGAGTGATGGTTGGATAGGGT 57.863 47.619 0.00 0.00 0.00 4.34
4109 4697 3.200825 ACAAGAGTGATGGTTGGATAGGG 59.799 47.826 0.00 0.00 0.00 3.53
4110 4698 4.494091 ACAAGAGTGATGGTTGGATAGG 57.506 45.455 0.00 0.00 0.00 2.57
4111 4699 5.977635 TGTACAAGAGTGATGGTTGGATAG 58.022 41.667 0.00 0.00 0.00 2.08
4112 4700 6.367374 TTGTACAAGAGTGATGGTTGGATA 57.633 37.500 3.59 0.00 0.00 2.59
4113 4701 4.908601 TGTACAAGAGTGATGGTTGGAT 57.091 40.909 0.00 0.00 0.00 3.41
4114 4702 4.698201 TTGTACAAGAGTGATGGTTGGA 57.302 40.909 3.59 0.00 0.00 3.53
4115 4703 5.964958 AATTGTACAAGAGTGATGGTTGG 57.035 39.130 14.65 0.00 0.00 3.77
4116 4704 9.345517 CAAATAATTGTACAAGAGTGATGGTTG 57.654 33.333 14.65 5.11 0.00 3.77
4130 4718 8.836583 ATCGAGGCGACAGACAAATAATTGTAC 61.837 40.741 0.00 0.00 43.70 2.90
4147 4735 3.280634 GGAGCTCGATCGAGGCGA 61.281 66.667 38.18 10.14 42.19 5.54
4149 4737 1.729470 TTCAGGAGCTCGATCGAGGC 61.729 60.000 38.18 30.27 42.19 4.70
4158 4746 1.160137 ATGCGTTTGTTCAGGAGCTC 58.840 50.000 4.71 4.71 0.00 4.09
4165 4753 2.293122 CTCCAGGAAATGCGTTTGTTCA 59.707 45.455 9.04 0.00 0.00 3.18
4166 4754 2.552315 TCTCCAGGAAATGCGTTTGTTC 59.448 45.455 9.04 0.00 0.00 3.18
4167 4755 2.582052 TCTCCAGGAAATGCGTTTGTT 58.418 42.857 9.04 0.00 0.00 2.83
4169 4757 2.749076 TCATCTCCAGGAAATGCGTTTG 59.251 45.455 9.04 0.00 0.00 2.93
4174 4762 4.148128 TCTCTTCATCTCCAGGAAATGC 57.852 45.455 0.00 0.00 0.00 3.56
4184 4772 3.550030 GCGGACTAGCTTCTCTTCATCTC 60.550 52.174 0.00 0.00 0.00 2.75
4195 4783 0.250234 TTGCAGATGCGGACTAGCTT 59.750 50.000 0.00 0.00 45.83 3.74
4199 4787 0.739462 CGGTTTGCAGATGCGGACTA 60.739 55.000 0.00 0.00 45.83 2.59
4234 4822 5.425630 AGTTTCAGATAACCCGTCCATTAC 58.574 41.667 0.00 0.00 0.00 1.89
4235 4823 5.687166 AGTTTCAGATAACCCGTCCATTA 57.313 39.130 0.00 0.00 0.00 1.90
4236 4824 4.569719 AGTTTCAGATAACCCGTCCATT 57.430 40.909 0.00 0.00 0.00 3.16
4237 4825 5.888982 ATAGTTTCAGATAACCCGTCCAT 57.111 39.130 0.00 0.00 0.00 3.41
4238 4826 5.687166 AATAGTTTCAGATAACCCGTCCA 57.313 39.130 0.00 0.00 0.00 4.02
4239 4827 5.878669 ACAAATAGTTTCAGATAACCCGTCC 59.121 40.000 0.00 0.00 0.00 4.79
4240 4828 6.980051 ACAAATAGTTTCAGATAACCCGTC 57.020 37.500 0.00 0.00 0.00 4.79
4241 4829 7.332678 GTGTACAAATAGTTTCAGATAACCCGT 59.667 37.037 0.00 0.00 0.00 5.28
4242 4830 7.463648 CGTGTACAAATAGTTTCAGATAACCCG 60.464 40.741 0.00 0.00 0.00 5.28
4243 4831 7.546667 TCGTGTACAAATAGTTTCAGATAACCC 59.453 37.037 0.00 0.00 0.00 4.11
4244 4832 8.470040 TCGTGTACAAATAGTTTCAGATAACC 57.530 34.615 0.00 0.00 0.00 2.85
4245 4833 9.350357 TCTCGTGTACAAATAGTTTCAGATAAC 57.650 33.333 0.00 0.00 0.00 1.89
4251 4839 6.811665 CCTCATCTCGTGTACAAATAGTTTCA 59.188 38.462 0.00 0.00 0.00 2.69
4259 4847 4.594123 TTCACCTCATCTCGTGTACAAA 57.406 40.909 0.00 0.00 0.00 2.83
4288 4876 4.042187 AGGGAAAGCGCCTTGAATATATCT 59.958 41.667 2.29 0.00 0.00 1.98
4318 4906 4.787551 ACACCTTGAATATATTTCCGGCA 58.212 39.130 0.00 0.00 0.00 5.69
4319 4907 5.767816 AACACCTTGAATATATTTCCGGC 57.232 39.130 0.00 0.00 0.00 6.13
4321 4909 7.490962 TGCTAACACCTTGAATATATTTCCG 57.509 36.000 0.00 0.00 0.00 4.30
4323 4911 9.066892 TCCATGCTAACACCTTGAATATATTTC 57.933 33.333 0.00 0.00 0.00 2.17
4362 4955 4.125703 CCATCACTGATTACCTGAGCTTC 58.874 47.826 0.00 0.00 0.00 3.86
4371 4964 4.209288 CGAATCCGTTCCATCACTGATTAC 59.791 45.833 0.00 0.00 32.53 1.89
4388 4981 2.447244 ATTCAGATCGGAGCGAATCC 57.553 50.000 7.26 0.00 45.64 3.01
4389 4982 6.146184 TCAATTAATTCAGATCGGAGCGAATC 59.854 38.462 11.57 0.00 39.99 2.52
4390 4983 5.991606 TCAATTAATTCAGATCGGAGCGAAT 59.008 36.000 0.00 7.26 39.99 3.34
4391 4984 5.234329 GTCAATTAATTCAGATCGGAGCGAA 59.766 40.000 0.00 3.78 39.99 4.70
4392 4985 4.745125 GTCAATTAATTCAGATCGGAGCGA 59.255 41.667 0.00 0.00 41.13 4.93
4393 4986 4.507756 TGTCAATTAATTCAGATCGGAGCG 59.492 41.667 0.00 0.00 0.00 5.03
4394 4987 5.294306 TGTGTCAATTAATTCAGATCGGAGC 59.706 40.000 0.00 0.00 0.00 4.70
4395 4988 6.758416 TCTGTGTCAATTAATTCAGATCGGAG 59.242 38.462 11.37 0.00 0.00 4.63
4396 4989 6.535150 GTCTGTGTCAATTAATTCAGATCGGA 59.465 38.462 16.14 9.27 35.07 4.55
4397 4990 6.313658 TGTCTGTGTCAATTAATTCAGATCGG 59.686 38.462 16.14 7.73 35.07 4.18
4398 4991 7.294676 TGTCTGTGTCAATTAATTCAGATCG 57.705 36.000 16.14 0.00 35.07 3.69
4399 4992 8.127327 CCATGTCTGTGTCAATTAATTCAGATC 58.873 37.037 16.14 11.89 35.07 2.75
4400 4993 7.613022 ACCATGTCTGTGTCAATTAATTCAGAT 59.387 33.333 16.14 3.88 35.07 2.90
4401 4994 6.942005 ACCATGTCTGTGTCAATTAATTCAGA 59.058 34.615 11.37 11.37 0.00 3.27
4402 4995 7.149569 ACCATGTCTGTGTCAATTAATTCAG 57.850 36.000 0.00 3.23 0.00 3.02
4403 4996 8.806429 ATACCATGTCTGTGTCAATTAATTCA 57.194 30.769 0.00 0.00 0.00 2.57
4406 4999 9.770097 CTCTATACCATGTCTGTGTCAATTAAT 57.230 33.333 0.00 0.00 0.00 1.40
4407 5000 8.204160 CCTCTATACCATGTCTGTGTCAATTAA 58.796 37.037 0.00 0.00 0.00 1.40
4408 5001 7.686859 GCCTCTATACCATGTCTGTGTCAATTA 60.687 40.741 0.00 0.00 0.00 1.40
4409 5002 6.586344 CCTCTATACCATGTCTGTGTCAATT 58.414 40.000 0.00 0.00 0.00 2.32
4410 5003 5.453903 GCCTCTATACCATGTCTGTGTCAAT 60.454 44.000 0.00 0.00 0.00 2.57
4411 5004 4.141937 GCCTCTATACCATGTCTGTGTCAA 60.142 45.833 0.00 0.00 0.00 3.18
4412 5005 3.384789 GCCTCTATACCATGTCTGTGTCA 59.615 47.826 0.00 0.00 0.00 3.58
4413 5006 3.639094 AGCCTCTATACCATGTCTGTGTC 59.361 47.826 0.00 0.00 0.00 3.67
4414 5007 3.386078 CAGCCTCTATACCATGTCTGTGT 59.614 47.826 0.00 0.00 0.00 3.72
4415 5008 3.801638 GCAGCCTCTATACCATGTCTGTG 60.802 52.174 0.00 0.00 0.00 3.66
4416 5009 2.366916 GCAGCCTCTATACCATGTCTGT 59.633 50.000 0.00 0.00 0.00 3.41
4417 5010 2.608998 CGCAGCCTCTATACCATGTCTG 60.609 54.545 0.00 0.00 0.00 3.51
4418 5011 1.615883 CGCAGCCTCTATACCATGTCT 59.384 52.381 0.00 0.00 0.00 3.41
4419 5012 1.341531 ACGCAGCCTCTATACCATGTC 59.658 52.381 0.00 0.00 0.00 3.06
4420 5013 1.341531 GACGCAGCCTCTATACCATGT 59.658 52.381 0.00 0.00 0.00 3.21
4421 5014 1.341209 TGACGCAGCCTCTATACCATG 59.659 52.381 0.00 0.00 0.00 3.66
4422 5015 1.704641 TGACGCAGCCTCTATACCAT 58.295 50.000 0.00 0.00 0.00 3.55
4423 5016 1.480789 TTGACGCAGCCTCTATACCA 58.519 50.000 0.00 0.00 0.00 3.25
4424 5017 2.821991 ATTGACGCAGCCTCTATACC 57.178 50.000 0.00 0.00 0.00 2.73
4425 5018 6.400091 CGAATTAATTGACGCAGCCTCTATAC 60.400 42.308 5.17 0.00 0.00 1.47
4426 5019 5.633601 CGAATTAATTGACGCAGCCTCTATA 59.366 40.000 5.17 0.00 0.00 1.31
4427 5020 4.449068 CGAATTAATTGACGCAGCCTCTAT 59.551 41.667 5.17 0.00 0.00 1.98
4428 5021 3.802139 CGAATTAATTGACGCAGCCTCTA 59.198 43.478 5.17 0.00 0.00 2.43
4429 5022 2.609459 CGAATTAATTGACGCAGCCTCT 59.391 45.455 5.17 0.00 0.00 3.69
4430 5023 2.286418 CCGAATTAATTGACGCAGCCTC 60.286 50.000 5.17 0.00 0.00 4.70
4431 5024 1.670811 CCGAATTAATTGACGCAGCCT 59.329 47.619 5.17 0.00 0.00 4.58
4432 5025 1.668751 TCCGAATTAATTGACGCAGCC 59.331 47.619 5.17 0.00 0.00 4.85
4433 5026 3.545633 GATCCGAATTAATTGACGCAGC 58.454 45.455 5.17 0.00 0.00 5.25
4434 5027 3.362986 CCGATCCGAATTAATTGACGCAG 60.363 47.826 5.17 0.00 0.00 5.18
4435 5028 2.542178 CCGATCCGAATTAATTGACGCA 59.458 45.455 5.17 0.00 0.00 5.24
4436 5029 2.798283 TCCGATCCGAATTAATTGACGC 59.202 45.455 5.17 0.00 0.00 5.19
4437 5030 4.295870 TCTCCGATCCGAATTAATTGACG 58.704 43.478 5.17 3.90 0.00 4.35
4438 5031 5.529791 TCTCTCCGATCCGAATTAATTGAC 58.470 41.667 5.17 0.00 0.00 3.18
4439 5032 5.302059 ACTCTCTCCGATCCGAATTAATTGA 59.698 40.000 5.17 0.00 0.00 2.57
4440 5033 5.533482 ACTCTCTCCGATCCGAATTAATTG 58.467 41.667 5.17 0.00 0.00 2.32
4441 5034 5.793030 ACTCTCTCCGATCCGAATTAATT 57.207 39.130 0.00 0.00 0.00 1.40
4442 5035 6.434652 ACATACTCTCTCCGATCCGAATTAAT 59.565 38.462 0.00 0.00 0.00 1.40
4443 5036 5.768662 ACATACTCTCTCCGATCCGAATTAA 59.231 40.000 0.00 0.00 0.00 1.40
4444 5037 5.314529 ACATACTCTCTCCGATCCGAATTA 58.685 41.667 0.00 0.00 0.00 1.40
4445 5038 4.145807 ACATACTCTCTCCGATCCGAATT 58.854 43.478 0.00 0.00 0.00 2.17
4446 5039 3.757270 ACATACTCTCTCCGATCCGAAT 58.243 45.455 0.00 0.00 0.00 3.34
4447 5040 3.210232 ACATACTCTCTCCGATCCGAA 57.790 47.619 0.00 0.00 0.00 4.30
4448 5041 2.932855 ACATACTCTCTCCGATCCGA 57.067 50.000 0.00 0.00 0.00 4.55
4449 5042 5.630661 AATAACATACTCTCTCCGATCCG 57.369 43.478 0.00 0.00 0.00 4.18
4450 5043 6.146347 GCAAAATAACATACTCTCTCCGATCC 59.854 42.308 0.00 0.00 0.00 3.36
4451 5044 6.701841 TGCAAAATAACATACTCTCTCCGATC 59.298 38.462 0.00 0.00 0.00 3.69
4452 5045 6.582636 TGCAAAATAACATACTCTCTCCGAT 58.417 36.000 0.00 0.00 0.00 4.18
4453 5046 5.972935 TGCAAAATAACATACTCTCTCCGA 58.027 37.500 0.00 0.00 0.00 4.55
4454 5047 6.662414 TTGCAAAATAACATACTCTCTCCG 57.338 37.500 0.00 0.00 0.00 4.63
4455 5048 8.213518 TCATTGCAAAATAACATACTCTCTCC 57.786 34.615 1.71 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.