Multiple sequence alignment - TraesCS2D01G441800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G441800 chr2D 100.000 6244 0 0 1 6244 552139120 552145363 0.000000e+00 11531.0
1 TraesCS2D01G441800 chr2D 92.000 500 27 6 1 488 117231542 117231044 0.000000e+00 689.0
2 TraesCS2D01G441800 chr2D 91.383 499 30 6 1 486 429202472 429202970 0.000000e+00 671.0
3 TraesCS2D01G441800 chr2D 91.200 500 32 5 1 488 220646275 220645776 0.000000e+00 669.0
4 TraesCS2D01G441800 chr2D 91.111 495 30 4 1 484 201456122 201456613 0.000000e+00 658.0
5 TraesCS2D01G441800 chr2D 81.206 713 127 5 3407 4117 551932707 551933414 9.080000e-158 568.0
6 TraesCS2D01G441800 chr2D 83.636 110 18 0 5338 5447 611209114 611209005 3.080000e-18 104.0
7 TraesCS2D01G441800 chr2A 95.439 3903 118 33 485 4374 692753283 692757138 0.000000e+00 6167.0
8 TraesCS2D01G441800 chr2A 87.183 749 80 5 5507 6244 692758153 692758896 0.000000e+00 837.0
9 TraesCS2D01G441800 chr2A 94.053 454 24 3 4829 5280 692757534 692757986 0.000000e+00 686.0
10 TraesCS2D01G441800 chr2A 92.008 488 37 2 1 486 70652930 70652443 0.000000e+00 684.0
11 TraesCS2D01G441800 chr2A 90.323 310 22 1 4376 4685 692757224 692757525 3.510000e-107 399.0
12 TraesCS2D01G441800 chr2A 84.034 357 56 1 5440 5796 385339826 385339471 5.990000e-90 342.0
13 TraesCS2D01G441800 chr2A 85.841 226 27 5 679 901 692706634 692706857 1.050000e-57 235.0
14 TraesCS2D01G441800 chr2A 94.737 57 3 0 436 492 7694410 7694354 8.620000e-14 89.8
15 TraesCS2D01G441800 chr2B 95.207 3922 122 19 485 4373 657789372 657793260 0.000000e+00 6141.0
16 TraesCS2D01G441800 chr2B 88.126 1078 70 24 4376 5447 657793296 657794321 0.000000e+00 1229.0
17 TraesCS2D01G441800 chr2B 84.810 790 86 17 5422 6198 657794338 657795106 0.000000e+00 763.0
18 TraesCS2D01G441800 chr2B 96.721 61 2 0 427 487 744831949 744832009 1.110000e-17 102.0
19 TraesCS2D01G441800 chr1D 95.483 487 21 1 1 486 366248265 366248751 0.000000e+00 776.0
20 TraesCS2D01G441800 chr1D 91.968 498 28 2 1 486 407802605 407803102 0.000000e+00 688.0
21 TraesCS2D01G441800 chr4D 92.016 501 21 5 1 487 488494465 488494960 0.000000e+00 686.0
22 TraesCS2D01G441800 chr4D 79.545 264 38 10 5907 6166 27374198 27373947 2.310000e-39 174.0
23 TraesCS2D01G441800 chr4D 81.416 113 19 1 5282 5392 303847305 303847193 2.400000e-14 91.6
24 TraesCS2D01G441800 chr7D 92.161 472 31 4 1 468 593681835 593682304 0.000000e+00 662.0
25 TraesCS2D01G441800 chr7D 82.836 134 21 2 5303 5435 384986602 384986734 1.100000e-22 119.0
26 TraesCS2D01G441800 chr6D 87.139 381 46 3 5427 5807 346270819 346270442 4.470000e-116 429.0
27 TraesCS2D01G441800 chr6D 82.707 133 12 10 358 486 139307566 139307691 2.380000e-19 108.0
28 TraesCS2D01G441800 chr3A 87.432 366 45 1 5440 5805 610046476 610046840 2.690000e-113 420.0
29 TraesCS2D01G441800 chr5B 85.864 382 52 2 5415 5796 293243511 293243890 7.540000e-109 405.0
30 TraesCS2D01G441800 chr5B 77.976 168 35 2 5282 5447 547542619 547542452 3.080000e-18 104.0
31 TraesCS2D01G441800 chr5B 87.654 81 9 1 6158 6237 628813814 628813734 6.660000e-15 93.5
32 TraesCS2D01G441800 chr3D 81.930 487 53 15 5349 5815 467479404 467479875 4.570000e-101 379.0
33 TraesCS2D01G441800 chr3D 80.925 173 30 3 6072 6244 352950912 352950743 3.930000e-27 134.0
34 TraesCS2D01G441800 chr3D 92.000 75 3 3 432 503 451197377 451197303 1.110000e-17 102.0
35 TraesCS2D01G441800 chr3D 89.333 75 7 1 6126 6200 84577920 84577847 6.660000e-15 93.5
36 TraesCS2D01G441800 chr3D 84.524 84 10 1 5312 5392 539359866 539359783 5.190000e-11 80.5
37 TraesCS2D01G441800 chr7A 83.548 389 57 5 5428 5816 106823844 106823463 2.140000e-94 357.0
38 TraesCS2D01G441800 chr7A 81.931 404 67 4 5415 5814 550049769 550049368 2.790000e-88 337.0
39 TraesCS2D01G441800 chr7B 84.741 367 43 7 5439 5805 383509286 383508933 7.700000e-94 355.0
40 TraesCS2D01G441800 chr7B 98.333 60 1 0 427 486 1399800 1399741 8.560000e-19 106.0
41 TraesCS2D01G441800 chr3B 81.984 383 64 5 5415 5796 425371489 425371111 2.810000e-83 320.0
42 TraesCS2D01G441800 chr3B 85.185 162 24 0 5643 5804 818909347 818909508 3.870000e-37 167.0
43 TraesCS2D01G441800 chr5A 78.544 261 48 8 5963 6222 599470231 599469978 1.390000e-36 165.0
44 TraesCS2D01G441800 chr5A 78.065 155 25 6 5955 6104 522999761 522999611 8.620000e-14 89.8
45 TraesCS2D01G441800 chr4B 82.286 175 24 6 5278 5447 599889052 599889224 1.810000e-30 145.0
46 TraesCS2D01G441800 chr4B 96.721 61 2 0 427 487 449193576 449193516 1.110000e-17 102.0
47 TraesCS2D01G441800 chr4B 82.927 82 14 0 5366 5447 134400985 134401066 2.410000e-09 75.0
48 TraesCS2D01G441800 chr6A 84.247 146 21 2 6095 6240 53882101 53881958 2.350000e-29 141.0
49 TraesCS2D01G441800 chr5D 77.778 180 34 6 6069 6244 487269550 487269727 8.560000e-19 106.0
50 TraesCS2D01G441800 chr5D 82.301 113 18 2 5336 5447 227731671 227731782 5.150000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G441800 chr2D 552139120 552145363 6243 False 11531.00 11531 100.0000 1 6244 1 chr2D.!!$F4 6243
1 TraesCS2D01G441800 chr2D 551932707 551933414 707 False 568.00 568 81.2060 3407 4117 1 chr2D.!!$F3 710
2 TraesCS2D01G441800 chr2A 692753283 692758896 5613 False 2022.25 6167 91.7495 485 6244 4 chr2A.!!$F2 5759
3 TraesCS2D01G441800 chr2B 657789372 657795106 5734 False 2711.00 6141 89.3810 485 6198 3 chr2B.!!$F2 5713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 363 0.309302 TTTGGCACACCGACGAAATG 59.691 50.000 0.00 0.00 39.29 2.32 F
448 449 0.317519 CGACCCAAACGGACAAAAGC 60.318 55.000 0.00 0.00 34.64 3.51 F
449 450 0.317519 GACCCAAACGGACAAAAGCG 60.318 55.000 0.00 0.00 34.64 4.68 F
485 486 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10 F
488 489 1.002087 CCGTTGGAGTTGCTCTAAGGT 59.998 52.381 11.77 0.00 35.91 3.50 F
2304 2317 1.246056 TGGCAGCAATTCCTGACAGC 61.246 55.000 0.00 0.00 45.59 4.40 F
4032 4066 2.026449 AGTGGCAAAGAGGATCCTTCAG 60.026 50.000 17.42 7.84 33.66 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2357 2370 2.279582 ATCCTTTAGTGCGTGAGACG 57.720 50.000 0.00 0.0 45.88 4.18 R
2499 2512 1.625818 CTTCTGCCCTCCAGTACAGTT 59.374 52.381 0.00 0.0 42.38 3.16 R
2673 2686 7.614974 TCTGGACATCCAACAATCATTAAATCA 59.385 33.333 1.50 0.0 46.97 2.57 R
2686 2699 5.491982 AGTTGACTATTCTGGACATCCAAC 58.508 41.667 1.50 0.0 46.97 3.77 R
2688 2701 8.004801 TCTATAGTTGACTATTCTGGACATCCA 58.995 37.037 8.80 0.0 40.55 3.41 R
4181 4216 0.979665 TTCTCTCCAAGCCTGGTCTG 59.020 55.000 0.15 0.0 43.97 3.51 R
5314 5440 0.249238 CTCTATCCGCAGACAGGTGC 60.249 60.000 0.00 0.0 40.29 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.270839 GAGCGCCTGCAGATGCTC 61.271 66.667 30.96 30.96 45.95 4.26
59 60 2.960659 CGCCTGCAGATGCTCGAG 60.961 66.667 17.39 8.45 42.66 4.04
60 61 3.270839 GCCTGCAGATGCTCGAGC 61.271 66.667 30.42 30.42 42.66 5.03
61 62 2.960659 CCTGCAGATGCTCGAGCG 60.961 66.667 30.75 18.21 45.83 5.03
62 63 3.628193 CTGCAGATGCTCGAGCGC 61.628 66.667 30.75 26.54 45.83 5.92
77 78 4.560856 CGCGAGGCCGAAGAGGAG 62.561 72.222 0.00 0.00 45.00 3.69
78 79 4.214327 GCGAGGCCGAAGAGGAGG 62.214 72.222 0.00 0.00 45.00 4.30
128 129 4.899239 GACATCGCCGCCCTCTGG 62.899 72.222 0.00 0.00 0.00 3.86
130 131 4.161295 CATCGCCGCCCTCTGGAA 62.161 66.667 0.00 0.00 0.00 3.53
131 132 4.162690 ATCGCCGCCCTCTGGAAC 62.163 66.667 0.00 0.00 0.00 3.62
135 136 4.760047 CCGCCCTCTGGAACACGG 62.760 72.222 0.00 0.00 0.00 4.94
138 139 4.003788 CCCTCTGGAACACGGCGT 62.004 66.667 6.77 6.77 0.00 5.68
139 140 2.030562 CCTCTGGAACACGGCGTT 59.969 61.111 11.19 0.00 41.86 4.84
146 147 4.636435 AACACGGCGTTCCCCTGG 62.636 66.667 11.19 0.00 29.27 4.45
175 176 4.194720 GCCGACGCTGATCGACCT 62.195 66.667 3.74 0.00 45.13 3.85
176 177 2.024871 CCGACGCTGATCGACCTC 59.975 66.667 3.74 0.00 45.13 3.85
177 178 2.761195 CCGACGCTGATCGACCTCA 61.761 63.158 3.74 0.00 45.13 3.86
178 179 1.583967 CGACGCTGATCGACCTCAC 60.584 63.158 0.00 0.00 45.13 3.51
179 180 1.226717 GACGCTGATCGACCTCACC 60.227 63.158 0.00 0.00 41.67 4.02
180 181 2.278206 CGCTGATCGACCTCACCG 60.278 66.667 0.00 0.00 41.67 4.94
181 182 2.105128 GCTGATCGACCTCACCGG 59.895 66.667 0.00 0.00 39.35 5.28
182 183 2.105128 CTGATCGACCTCACCGGC 59.895 66.667 0.00 0.00 35.61 6.13
183 184 3.432051 CTGATCGACCTCACCGGCC 62.432 68.421 0.00 0.00 35.61 6.13
184 185 3.148279 GATCGACCTCACCGGCCT 61.148 66.667 0.00 0.00 35.61 5.19
185 186 3.432051 GATCGACCTCACCGGCCTG 62.432 68.421 0.00 0.00 35.61 4.85
186 187 3.957435 ATCGACCTCACCGGCCTGA 62.957 63.158 0.00 0.00 35.61 3.86
187 188 4.436998 CGACCTCACCGGCCTGAC 62.437 72.222 0.00 0.00 35.61 3.51
188 189 4.436998 GACCTCACCGGCCTGACG 62.437 72.222 0.00 0.00 35.61 4.35
216 217 4.124351 CGCCAACGAGGACGCCTA 62.124 66.667 2.86 0.00 43.93 3.93
217 218 2.202756 GCCAACGAGGACGCCTAG 60.203 66.667 2.86 1.87 43.96 3.02
218 219 2.494918 CCAACGAGGACGCCTAGG 59.505 66.667 3.67 3.67 43.96 3.02
219 220 2.494918 CAACGAGGACGCCTAGGG 59.505 66.667 11.72 3.13 43.96 3.53
220 221 3.459063 AACGAGGACGCCTAGGGC 61.459 66.667 11.72 1.76 46.75 5.19
230 231 3.760035 CCTAGGGCAGCACGTCGT 61.760 66.667 0.00 0.00 0.00 4.34
231 232 2.202623 CTAGGGCAGCACGTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
232 233 2.675423 TAGGGCAGCACGTCGTCT 60.675 61.111 0.00 0.00 0.00 4.18
233 234 1.374343 CTAGGGCAGCACGTCGTCTA 61.374 60.000 0.00 0.00 0.00 2.59
234 235 1.374343 TAGGGCAGCACGTCGTCTAG 61.374 60.000 0.00 0.00 0.00 2.43
235 236 2.567049 GGCAGCACGTCGTCTAGT 59.433 61.111 0.00 0.00 0.00 2.57
236 237 1.080705 GGCAGCACGTCGTCTAGTT 60.081 57.895 0.00 0.00 0.00 2.24
237 238 0.666577 GGCAGCACGTCGTCTAGTTT 60.667 55.000 0.00 0.00 0.00 2.66
238 239 1.137513 GCAGCACGTCGTCTAGTTTT 58.862 50.000 0.00 0.00 0.00 2.43
239 240 1.525619 GCAGCACGTCGTCTAGTTTTT 59.474 47.619 0.00 0.00 0.00 1.94
240 241 2.727798 GCAGCACGTCGTCTAGTTTTTA 59.272 45.455 0.00 0.00 0.00 1.52
241 242 3.181543 GCAGCACGTCGTCTAGTTTTTAG 60.182 47.826 0.00 0.00 0.00 1.85
242 243 3.979495 CAGCACGTCGTCTAGTTTTTAGT 59.021 43.478 0.00 0.00 0.00 2.24
243 244 3.979495 AGCACGTCGTCTAGTTTTTAGTG 59.021 43.478 0.00 0.00 0.00 2.74
244 245 3.732721 GCACGTCGTCTAGTTTTTAGTGT 59.267 43.478 0.00 0.00 0.00 3.55
245 246 4.207841 GCACGTCGTCTAGTTTTTAGTGTT 59.792 41.667 0.00 0.00 0.00 3.32
246 247 5.276536 GCACGTCGTCTAGTTTTTAGTGTTT 60.277 40.000 0.00 0.00 0.00 2.83
247 248 6.074888 GCACGTCGTCTAGTTTTTAGTGTTTA 60.075 38.462 0.00 0.00 0.00 2.01
248 249 7.515059 GCACGTCGTCTAGTTTTTAGTGTTTAA 60.515 37.037 0.00 0.00 0.00 1.52
249 250 8.482429 CACGTCGTCTAGTTTTTAGTGTTTAAT 58.518 33.333 0.00 0.00 0.00 1.40
250 251 9.034544 ACGTCGTCTAGTTTTTAGTGTTTAATT 57.965 29.630 0.00 0.00 0.00 1.40
251 252 9.298113 CGTCGTCTAGTTTTTAGTGTTTAATTG 57.702 33.333 0.00 0.00 0.00 2.32
265 266 8.635765 AGTGTTTAATTGATGTAATGTGGACT 57.364 30.769 0.00 0.00 0.00 3.85
266 267 9.077885 AGTGTTTAATTGATGTAATGTGGACTT 57.922 29.630 0.00 0.00 0.00 3.01
267 268 9.691362 GTGTTTAATTGATGTAATGTGGACTTT 57.309 29.630 0.00 0.00 0.00 2.66
268 269 9.906660 TGTTTAATTGATGTAATGTGGACTTTC 57.093 29.630 0.00 0.00 0.00 2.62
269 270 9.906660 GTTTAATTGATGTAATGTGGACTTTCA 57.093 29.630 0.00 0.00 0.00 2.69
270 271 9.906660 TTTAATTGATGTAATGTGGACTTTCAC 57.093 29.630 0.00 0.00 38.09 3.18
271 272 5.957842 TTGATGTAATGTGGACTTTCACC 57.042 39.130 0.00 0.00 36.87 4.02
272 273 4.000325 TGATGTAATGTGGACTTTCACCG 59.000 43.478 0.00 0.00 36.87 4.94
273 274 2.773487 TGTAATGTGGACTTTCACCGG 58.227 47.619 0.00 0.00 36.87 5.28
274 275 1.467342 GTAATGTGGACTTTCACCGGC 59.533 52.381 0.00 0.00 36.87 6.13
275 276 0.893727 AATGTGGACTTTCACCGGCC 60.894 55.000 0.00 0.00 36.87 6.13
276 277 1.779061 ATGTGGACTTTCACCGGCCT 61.779 55.000 0.00 0.00 36.87 5.19
277 278 1.228154 GTGGACTTTCACCGGCCTT 60.228 57.895 0.00 0.00 0.00 4.35
278 279 1.072505 TGGACTTTCACCGGCCTTC 59.927 57.895 0.00 0.00 0.00 3.46
279 280 2.033194 GGACTTTCACCGGCCTTCG 61.033 63.158 0.00 0.00 38.88 3.79
280 281 1.301479 GACTTTCACCGGCCTTCGT 60.301 57.895 0.00 0.00 37.11 3.85
281 282 1.566018 GACTTTCACCGGCCTTCGTG 61.566 60.000 0.00 4.54 37.11 4.35
282 283 2.281208 TTTCACCGGCCTTCGTGG 60.281 61.111 0.00 3.60 37.11 4.94
291 292 3.763671 CCTTCGTGGCTGGCTTTT 58.236 55.556 2.00 0.00 0.00 2.27
292 293 2.941210 CCTTCGTGGCTGGCTTTTA 58.059 52.632 2.00 0.00 0.00 1.52
293 294 1.463674 CCTTCGTGGCTGGCTTTTAT 58.536 50.000 2.00 0.00 0.00 1.40
294 295 1.133025 CCTTCGTGGCTGGCTTTTATG 59.867 52.381 2.00 0.00 0.00 1.90
295 296 1.812571 CTTCGTGGCTGGCTTTTATGT 59.187 47.619 2.00 0.00 0.00 2.29
296 297 1.904287 TCGTGGCTGGCTTTTATGTT 58.096 45.000 2.00 0.00 0.00 2.71
297 298 2.235016 TCGTGGCTGGCTTTTATGTTT 58.765 42.857 2.00 0.00 0.00 2.83
298 299 3.413327 TCGTGGCTGGCTTTTATGTTTA 58.587 40.909 2.00 0.00 0.00 2.01
299 300 3.821600 TCGTGGCTGGCTTTTATGTTTAA 59.178 39.130 2.00 0.00 0.00 1.52
300 301 4.461081 TCGTGGCTGGCTTTTATGTTTAAT 59.539 37.500 2.00 0.00 0.00 1.40
301 302 5.047660 TCGTGGCTGGCTTTTATGTTTAATT 60.048 36.000 2.00 0.00 0.00 1.40
302 303 6.151312 TCGTGGCTGGCTTTTATGTTTAATTA 59.849 34.615 2.00 0.00 0.00 1.40
303 304 6.809196 CGTGGCTGGCTTTTATGTTTAATTAA 59.191 34.615 2.00 0.00 0.00 1.40
304 305 7.329717 CGTGGCTGGCTTTTATGTTTAATTAAA 59.670 33.333 6.54 6.54 0.00 1.52
305 306 9.161629 GTGGCTGGCTTTTATGTTTAATTAAAT 57.838 29.630 13.54 1.99 0.00 1.40
306 307 9.160496 TGGCTGGCTTTTATGTTTAATTAAATG 57.840 29.630 13.54 0.00 0.00 2.32
307 308 8.122330 GGCTGGCTTTTATGTTTAATTAAATGC 58.878 33.333 13.54 6.26 37.56 3.56
308 309 8.663911 GCTGGCTTTTATGTTTAATTAAATGCA 58.336 29.630 13.54 8.51 38.87 3.96
358 359 4.220413 TTTTTGGCACACCGACGA 57.780 50.000 0.00 0.00 39.29 4.20
359 360 2.478989 TTTTTGGCACACCGACGAA 58.521 47.368 0.00 0.00 39.29 3.85
360 361 0.809385 TTTTTGGCACACCGACGAAA 59.191 45.000 0.00 0.00 39.29 3.46
361 362 1.025812 TTTTGGCACACCGACGAAAT 58.974 45.000 0.00 0.00 39.29 2.17
362 363 0.309302 TTTGGCACACCGACGAAATG 59.691 50.000 0.00 0.00 39.29 2.32
363 364 1.511318 TTGGCACACCGACGAAATGG 61.511 55.000 0.00 0.00 39.29 3.16
364 365 2.686816 GGCACACCGACGAAATGGG 61.687 63.158 0.00 0.00 0.00 4.00
365 366 1.964373 GCACACCGACGAAATGGGT 60.964 57.895 0.00 0.00 40.76 4.51
366 367 1.908066 GCACACCGACGAAATGGGTC 61.908 60.000 0.00 0.00 37.29 4.46
371 372 2.822701 GACGAAATGGGTCGGGCC 60.823 66.667 0.00 0.00 45.40 5.80
372 373 3.615509 GACGAAATGGGTCGGGCCA 62.616 63.158 4.39 0.00 45.40 5.36
373 374 2.824041 CGAAATGGGTCGGGCCAG 60.824 66.667 4.39 0.00 39.65 4.85
374 375 3.140814 GAAATGGGTCGGGCCAGC 61.141 66.667 4.39 0.00 39.65 4.85
403 404 4.025401 GCGCCGACCCAAACACAG 62.025 66.667 0.00 0.00 0.00 3.66
404 405 4.025401 CGCCGACCCAAACACAGC 62.025 66.667 0.00 0.00 0.00 4.40
405 406 4.025401 GCCGACCCAAACACAGCG 62.025 66.667 0.00 0.00 0.00 5.18
406 407 4.025401 CCGACCCAAACACAGCGC 62.025 66.667 0.00 0.00 0.00 5.92
407 408 4.025401 CGACCCAAACACAGCGCC 62.025 66.667 2.29 0.00 0.00 6.53
408 409 4.025401 GACCCAAACACAGCGCCG 62.025 66.667 2.29 0.00 0.00 6.46
411 412 4.025401 CCAAACACAGCGCCGGAC 62.025 66.667 5.05 0.00 0.00 4.79
413 414 4.903010 AAACACAGCGCCGGACGT 62.903 61.111 5.05 0.00 46.11 4.34
414 415 4.903010 AACACAGCGCCGGACGTT 62.903 61.111 5.05 3.20 46.11 3.99
415 416 4.903010 ACACAGCGCCGGACGTTT 62.903 61.111 5.05 0.00 46.11 3.60
416 417 4.368808 CACAGCGCCGGACGTTTG 62.369 66.667 5.05 13.47 46.11 2.93
417 418 4.903010 ACAGCGCCGGACGTTTGT 62.903 61.111 5.05 14.09 46.11 2.83
418 419 4.368808 CAGCGCCGGACGTTTGTG 62.369 66.667 5.05 1.98 46.11 3.33
419 420 4.903010 AGCGCCGGACGTTTGTGT 62.903 61.111 5.05 0.00 46.11 3.72
420 421 4.364409 GCGCCGGACGTTTGTGTC 62.364 66.667 5.05 0.00 46.11 3.67
426 427 3.708734 GACGTTTGTGTCCGCCGG 61.709 66.667 0.00 0.00 32.61 6.13
447 448 3.837669 CGACCCAAACGGACAAAAG 57.162 52.632 0.00 0.00 34.64 2.27
448 449 0.317519 CGACCCAAACGGACAAAAGC 60.318 55.000 0.00 0.00 34.64 3.51
449 450 0.317519 GACCCAAACGGACAAAAGCG 60.318 55.000 0.00 0.00 34.64 4.68
450 451 1.660264 CCCAAACGGACAAAAGCGC 60.660 57.895 0.00 0.00 0.00 5.92
451 452 1.660264 CCAAACGGACAAAAGCGCC 60.660 57.895 2.29 0.00 0.00 6.53
455 456 4.084888 CGGACAAAAGCGCCGTCC 62.085 66.667 20.22 20.22 44.79 4.79
456 457 4.084888 GGACAAAAGCGCCGTCCG 62.085 66.667 16.93 0.65 39.86 4.79
457 458 3.343421 GACAAAAGCGCCGTCCGT 61.343 61.111 2.29 0.00 39.71 4.69
458 459 2.888998 GACAAAAGCGCCGTCCGTT 61.889 57.895 2.29 0.00 39.71 4.44
459 460 2.330041 CAAAAGCGCCGTCCGTTT 59.670 55.556 2.29 0.00 42.34 3.60
460 461 2.008697 CAAAAGCGCCGTCCGTTTG 61.009 57.895 2.29 1.85 39.53 2.93
461 462 3.189010 AAAAGCGCCGTCCGTTTGG 62.189 57.895 2.29 0.00 39.53 3.28
478 479 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
479 480 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
482 483 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
483 484 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
484 485 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
485 486 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
486 487 1.726853 CCCGTTGGAGTTGCTCTAAG 58.273 55.000 0.00 0.00 31.92 2.18
487 488 1.676014 CCCGTTGGAGTTGCTCTAAGG 60.676 57.143 7.60 7.60 36.87 2.69
488 489 1.002087 CCGTTGGAGTTGCTCTAAGGT 59.998 52.381 11.77 0.00 35.91 3.50
491 492 4.312443 CGTTGGAGTTGCTCTAAGGTAAA 58.688 43.478 6.73 0.00 34.04 2.01
493 494 5.237779 CGTTGGAGTTGCTCTAAGGTAAAAA 59.762 40.000 6.73 0.00 34.04 1.94
501 502 9.053840 AGTTGCTCTAAGGTAAAAAGTCTAAAC 57.946 33.333 0.00 0.00 0.00 2.01
546 547 8.777413 CCAAGAACATCACACCAATATATACAG 58.223 37.037 0.00 0.00 0.00 2.74
552 559 9.109393 ACATCACACCAATATATACAGAAACAC 57.891 33.333 0.00 0.00 0.00 3.32
557 564 9.547753 ACACCAATATATACAGAAACACAGATC 57.452 33.333 0.00 0.00 0.00 2.75
558 565 8.993121 CACCAATATATACAGAAACACAGATCC 58.007 37.037 0.00 0.00 0.00 3.36
644 651 5.046591 TGCAATCTTGTAGGTAGTTGTAGCT 60.047 40.000 0.00 0.00 40.23 3.32
645 652 5.520649 GCAATCTTGTAGGTAGTTGTAGCTC 59.479 44.000 0.00 0.00 38.06 4.09
646 653 6.628398 GCAATCTTGTAGGTAGTTGTAGCTCT 60.628 42.308 0.00 0.00 38.06 4.09
647 654 7.416438 GCAATCTTGTAGGTAGTTGTAGCTCTA 60.416 40.741 0.00 0.00 38.06 2.43
648 655 6.998968 TCTTGTAGGTAGTTGTAGCTCTAC 57.001 41.667 0.00 0.00 38.06 2.59
649 656 6.719301 TCTTGTAGGTAGTTGTAGCTCTACT 58.281 40.000 9.45 7.55 38.06 2.57
650 657 7.173722 TCTTGTAGGTAGTTGTAGCTCTACTT 58.826 38.462 9.45 5.51 38.06 2.24
651 658 7.668886 TCTTGTAGGTAGTTGTAGCTCTACTTT 59.331 37.037 9.45 3.09 38.06 2.66
652 659 7.388460 TGTAGGTAGTTGTAGCTCTACTTTC 57.612 40.000 9.45 2.48 38.06 2.62
653 660 7.173722 TGTAGGTAGTTGTAGCTCTACTTTCT 58.826 38.462 9.45 8.12 38.06 2.52
654 661 6.518208 AGGTAGTTGTAGCTCTACTTTCTG 57.482 41.667 9.45 0.00 37.33 3.02
655 662 6.246919 AGGTAGTTGTAGCTCTACTTTCTGA 58.753 40.000 9.45 0.00 37.33 3.27
656 663 6.376018 AGGTAGTTGTAGCTCTACTTTCTGAG 59.624 42.308 9.45 0.00 37.33 3.35
657 664 6.374894 GGTAGTTGTAGCTCTACTTTCTGAGA 59.625 42.308 9.45 0.00 37.33 3.27
658 665 6.509418 AGTTGTAGCTCTACTTTCTGAGAG 57.491 41.667 8.34 0.00 41.86 3.20
659 666 6.242396 AGTTGTAGCTCTACTTTCTGAGAGA 58.758 40.000 1.79 0.00 41.55 3.10
660 667 6.717540 AGTTGTAGCTCTACTTTCTGAGAGAA 59.282 38.462 1.79 0.00 41.55 2.87
661 668 7.396055 AGTTGTAGCTCTACTTTCTGAGAGAAT 59.604 37.037 1.79 0.00 41.55 2.40
662 669 8.679100 GTTGTAGCTCTACTTTCTGAGAGAATA 58.321 37.037 1.79 0.00 41.55 1.75
663 670 8.809468 TGTAGCTCTACTTTCTGAGAGAATAA 57.191 34.615 1.79 0.00 41.55 1.40
664 671 8.679100 TGTAGCTCTACTTTCTGAGAGAATAAC 58.321 37.037 1.79 0.00 41.55 1.89
665 672 7.954666 AGCTCTACTTTCTGAGAGAATAACT 57.045 36.000 1.79 0.00 41.55 2.24
1055 1062 6.674573 AGATAGGTATGTTCACCTCTAGTGT 58.325 40.000 0.00 0.00 46.34 3.55
1674 1687 6.096705 TGTGTCAAAATCCTGTTCTTCAATGT 59.903 34.615 0.00 0.00 0.00 2.71
1695 1708 5.809001 TGTATTTCTTTCTGTGCTCATCCT 58.191 37.500 0.00 0.00 0.00 3.24
2304 2317 1.246056 TGGCAGCAATTCCTGACAGC 61.246 55.000 0.00 0.00 45.59 4.40
2406 2419 2.441410 TCACTGCCGCAAAATTATGGA 58.559 42.857 0.00 0.00 0.00 3.41
2499 2512 5.302568 GGATATGGATGACAGGCAATTTGAA 59.697 40.000 0.00 0.00 0.00 2.69
2650 2663 4.459337 CCAATCCTACCAAGGTTTGTCTTC 59.541 45.833 12.10 0.00 45.45 2.87
2665 2678 6.479660 GGTTTGTCTTCTTCATCATTTTGCAA 59.520 34.615 0.00 0.00 0.00 4.08
2721 2734 9.685828 CCAGAATAGTCAACTATAGAAGCTAAC 57.314 37.037 6.78 0.00 38.15 2.34
2747 2760 7.095910 CACTAGGGTATCTTCAATGATGCTAG 58.904 42.308 0.00 0.00 31.28 3.42
2754 2767 7.274468 GGTATCTTCAATGATGCTAGATGTACG 59.726 40.741 5.65 0.00 32.99 3.67
2755 2768 6.149129 TCTTCAATGATGCTAGATGTACGT 57.851 37.500 0.00 0.00 0.00 3.57
2802 2815 6.825610 ACAATTCAAATTTCAGGCCACTTTA 58.174 32.000 5.01 0.00 0.00 1.85
2869 2883 8.729805 ACTTCATCCATTTATTCTCACTTCTC 57.270 34.615 0.00 0.00 0.00 2.87
2873 2887 8.981659 TCATCCATTTATTCTCACTTCTCAGTA 58.018 33.333 0.00 0.00 0.00 2.74
2927 2941 5.681639 AGTACTATGCAGTCCAATAAACCC 58.318 41.667 0.00 0.00 36.14 4.11
2928 2942 4.584638 ACTATGCAGTCCAATAAACCCA 57.415 40.909 0.00 0.00 0.00 4.51
3021 3035 9.836864 AACATGTGTTAGATAATATGCTTCTGA 57.163 29.630 0.00 0.00 36.32 3.27
3042 3056 7.030165 TCTGATGAACTTTCTGTCGAATAGTC 58.970 38.462 0.00 0.00 0.00 2.59
3089 3103 7.984859 ATATTCAGGCTGATACTGATATCCA 57.015 36.000 19.50 0.00 43.82 3.41
3098 3112 6.148480 GCTGATACTGATATCCAATGGAACAC 59.852 42.308 5.89 0.98 37.94 3.32
3099 3113 7.135591 TGATACTGATATCCAATGGAACACA 57.864 36.000 5.89 5.82 37.94 3.72
3134 3148 2.079158 GTTGCTCATTGTGCTGCTCTA 58.921 47.619 11.58 0.00 0.00 2.43
3140 3166 4.738839 GCTCATTGTGCTGCTCTATAGTGA 60.739 45.833 5.99 0.00 0.00 3.41
3172 3199 4.962155 ACCCCATTTATCTTGATCGAGTC 58.038 43.478 9.87 0.00 0.00 3.36
3298 3329 4.081420 TCTCCAGCAAAGTATTGACCTCTC 60.081 45.833 0.00 0.00 38.94 3.20
3300 3331 3.937706 CCAGCAAAGTATTGACCTCTCTG 59.062 47.826 0.00 0.00 38.94 3.35
3347 3378 6.483640 AGACAACACTTCCTGATTTACTCAAC 59.516 38.462 0.00 0.00 32.14 3.18
3375 3406 4.034742 ACGTAAACAATGTGACAGAACCAC 59.965 41.667 0.00 0.00 35.23 4.16
3384 3415 5.913137 TGTGACAGAACCACAAAAATCTT 57.087 34.783 0.00 0.00 41.07 2.40
3425 3457 7.880195 GGGTACTGCTCATCTATGTTTGATATT 59.120 37.037 0.00 0.00 0.00 1.28
3571 3603 3.648067 TGGCATGGGACTAATAGGAGAAG 59.352 47.826 0.00 0.00 0.00 2.85
3574 3606 4.262678 GCATGGGACTAATAGGAGAAGGAC 60.263 50.000 0.00 0.00 0.00 3.85
4032 4066 2.026449 AGTGGCAAAGAGGATCCTTCAG 60.026 50.000 17.42 7.84 33.66 3.02
4236 4271 5.447818 CCATTAGCTAGCTCGGAAAACAAAG 60.448 44.000 23.26 4.20 0.00 2.77
4250 4286 5.759763 GGAAAACAAAGAAAATCTGGCATGT 59.240 36.000 0.00 0.00 0.00 3.21
4264 4300 4.688879 TCTGGCATGTCTTAACTGTTTACG 59.311 41.667 0.00 0.00 0.00 3.18
4266 4302 3.998341 GGCATGTCTTAACTGTTTACGGA 59.002 43.478 0.00 0.00 0.00 4.69
4346 4382 5.291858 TCCATCATCTTTTCGTCTCATTTCG 59.708 40.000 0.00 0.00 0.00 3.46
4357 4393 3.493129 CGTCTCATTTCGTTTGGAGTTGA 59.507 43.478 0.00 0.00 0.00 3.18
4374 4410 9.444600 TTGGAGTTGACTTCAAAATATAGTACC 57.555 33.333 2.38 0.00 38.46 3.34
4414 4534 1.140852 GTCTGCATGGCCCACTATGTA 59.859 52.381 0.00 0.00 0.00 2.29
4440 4560 6.354130 TCTTTTACAGAAAGTGGCTTAGTGT 58.646 36.000 0.00 0.00 0.00 3.55
4459 4579 2.741517 TGTGTTGCATTCACTGGTATCG 59.258 45.455 18.63 0.00 36.83 2.92
4480 4603 9.290988 GTATCGGTATCACATCTCATAGGATAT 57.709 37.037 0.00 0.00 0.00 1.63
4517 4640 3.942829 ACTTCGCAGAGATCCAAAATCA 58.057 40.909 0.00 0.00 38.43 2.57
4530 4653 5.186996 TCCAAAATCAGTGCAGAACTTTC 57.813 39.130 0.00 0.00 36.83 2.62
4534 4657 4.825546 AATCAGTGCAGAACTTTCACAG 57.174 40.909 0.00 0.00 36.83 3.66
4564 4687 3.907194 CGAATCGCTAGGTAAATCGAGTC 59.093 47.826 5.82 5.82 40.97 3.36
4592 4715 1.862815 GCGTGATAATCCGTGCGTAGT 60.863 52.381 0.00 0.00 0.00 2.73
4630 4753 7.040062 CCCAATACTCCAATAGTTGTCAAAACA 60.040 37.037 0.00 0.00 39.80 2.83
4660 4783 6.595716 TCTTAGCTACAAGATGAGAAAAAGGC 59.404 38.462 0.00 0.00 29.55 4.35
4707 4831 1.100510 CCCATGCCATCACAGAGTTG 58.899 55.000 0.00 0.00 0.00 3.16
4710 4834 0.994247 ATGCCATCACAGAGTTGGGA 59.006 50.000 0.00 0.00 41.95 4.37
4727 4851 1.641677 GACACGAGCAACACACACC 59.358 57.895 0.00 0.00 0.00 4.16
4750 4874 5.159925 CCAACAATGCGAATGTATGACAAA 58.840 37.500 0.00 0.00 0.00 2.83
4803 4927 0.032678 ATCAGCATCCTTACCTCGCG 59.967 55.000 0.00 0.00 0.00 5.87
5022 5146 3.611025 AGGGGACTGAACATTTCCAAA 57.389 42.857 0.00 0.00 41.13 3.28
5155 5281 2.512286 GCTGCTCGCCTGCATACA 60.512 61.111 0.00 0.00 42.48 2.29
5268 5394 4.653801 ACTTACCAGGTGGCAAAAGAAAAT 59.346 37.500 0.76 0.00 39.32 1.82
5276 5402 4.213270 GGTGGCAAAAGAAAATAAACCTGC 59.787 41.667 0.00 0.00 0.00 4.85
5280 5406 6.266558 TGGCAAAAGAAAATAAACCTGCTAGA 59.733 34.615 0.00 0.00 0.00 2.43
5281 5407 6.808704 GGCAAAAGAAAATAAACCTGCTAGAG 59.191 38.462 0.00 0.00 0.00 2.43
5282 5408 6.309009 GCAAAAGAAAATAAACCTGCTAGAGC 59.691 38.462 0.00 0.00 42.50 4.09
5301 5427 1.683943 CATCTCCAATGGCAATCCGT 58.316 50.000 0.00 0.00 34.14 4.69
5308 5434 5.186797 TCTCCAATGGCAATCCGTAAATTTT 59.813 36.000 0.00 0.00 34.14 1.82
5314 5440 3.175929 GCAATCCGTAAATTTTGTCCCG 58.824 45.455 0.00 0.00 0.00 5.14
5315 5441 3.175929 CAATCCGTAAATTTTGTCCCGC 58.824 45.455 0.00 0.00 0.00 6.13
5316 5442 1.893544 TCCGTAAATTTTGTCCCGCA 58.106 45.000 0.00 0.00 0.00 5.69
5319 5445 1.538075 CGTAAATTTTGTCCCGCACCT 59.462 47.619 0.00 0.00 0.00 4.00
5323 5449 0.110486 ATTTTGTCCCGCACCTGTCT 59.890 50.000 0.00 0.00 0.00 3.41
5331 5457 4.427394 GCACCTGTCTGCGGATAG 57.573 61.111 12.15 12.15 0.00 2.08
5332 5458 1.816537 GCACCTGTCTGCGGATAGA 59.183 57.895 20.02 0.00 33.33 1.98
5359 5485 3.274586 CGCCATCACGGATGCAGG 61.275 66.667 8.01 0.00 38.59 4.85
5361 5487 1.890979 GCCATCACGGATGCAGGAG 60.891 63.158 8.01 0.00 38.59 3.69
5362 5488 1.227764 CCATCACGGATGCAGGAGG 60.228 63.158 8.01 0.00 38.59 4.30
5378 5504 2.185867 GGCCGTCATCCAACGCTA 59.814 61.111 0.00 0.00 41.26 4.26
5411 5537 5.508200 TTTTGGCAACGACTCAAACTAAT 57.492 34.783 0.00 0.00 42.51 1.73
5436 5562 5.011370 GGACGAAATTCGATTAAACACGAC 58.989 41.667 22.92 0.00 43.74 4.34
5493 5660 2.632996 TCATCCGGCTAGGTCTAAATGG 59.367 50.000 0.00 0.00 41.99 3.16
5495 5662 2.037144 TCCGGCTAGGTCTAAATGGTC 58.963 52.381 0.00 0.00 41.99 4.02
5497 5664 1.269621 CGGCTAGGTCTAAATGGTCGG 60.270 57.143 0.00 0.00 0.00 4.79
5498 5665 1.540580 GGCTAGGTCTAAATGGTCGGC 60.541 57.143 0.00 0.00 0.00 5.54
5539 5706 2.158449 CGCACATGAACCAAGAGAACTC 59.842 50.000 0.00 0.00 0.00 3.01
5543 5710 4.818546 CACATGAACCAAGAGAACTCAAGT 59.181 41.667 0.00 0.00 0.00 3.16
5555 5722 3.385111 AGAACTCAAGTTTCACCGTCTCT 59.615 43.478 0.00 0.00 38.56 3.10
5561 5728 4.583489 TCAAGTTTCACCGTCTCTAGTTCT 59.417 41.667 0.00 0.00 0.00 3.01
5567 5734 1.271982 ACCGTCTCTAGTTCTGCCTCA 60.272 52.381 0.00 0.00 0.00 3.86
5603 5770 1.753463 CTCCGTAACCTCCGCCTCT 60.753 63.158 0.00 0.00 0.00 3.69
5604 5771 2.005960 CTCCGTAACCTCCGCCTCTG 62.006 65.000 0.00 0.00 0.00 3.35
5623 5790 2.203938 AGGCCCGGGAAGTGAAGA 60.204 61.111 29.31 0.00 0.00 2.87
5767 5934 0.804156 GCACTACTCTTCCTCGCTGC 60.804 60.000 0.00 0.00 0.00 5.25
5768 5935 0.814457 CACTACTCTTCCTCGCTGCT 59.186 55.000 0.00 0.00 0.00 4.24
5771 5938 0.612174 TACTCTTCCTCGCTGCTGGT 60.612 55.000 0.00 0.00 0.00 4.00
5807 5974 2.434185 GGCTTCATGGTCGTCGCA 60.434 61.111 0.00 0.00 0.00 5.10
5837 6004 2.484065 CCTAAAACGGCCACGATATCCA 60.484 50.000 2.24 0.00 44.60 3.41
5851 6018 0.899720 TATCCAAAAGCGTCCGGACT 59.100 50.000 30.92 12.01 0.00 3.85
5885 6052 0.108615 GATATGGGAGCCGGACATCG 60.109 60.000 5.05 0.00 38.88 3.84
5932 6099 5.359716 AACGTCCGCATACATTTTAAACA 57.640 34.783 0.00 0.00 0.00 2.83
5992 6170 7.873719 TTAAATCGGGTCACATTCATTACAT 57.126 32.000 0.00 0.00 0.00 2.29
6052 6231 7.002879 AGTTAACCTAGTCTATATCTTCGCCA 58.997 38.462 0.88 0.00 0.00 5.69
6059 6238 1.269723 CTATATCTTCGCCAGCGTCCA 59.730 52.381 12.32 0.00 40.74 4.02
6107 6286 2.283316 TCCATGTCCGACGGGTCA 60.283 61.111 15.25 14.03 35.81 4.02
6131 6310 1.271379 GCCCTAGGAAGTGAAGTTGCA 60.271 52.381 11.48 0.00 0.00 4.08
6153 6335 3.330701 AGGTTGCCAATGAGGAAGAGTAA 59.669 43.478 0.00 0.00 41.22 2.24
6154 6336 3.691609 GGTTGCCAATGAGGAAGAGTAAG 59.308 47.826 0.00 0.00 41.22 2.34
6155 6337 4.565652 GGTTGCCAATGAGGAAGAGTAAGA 60.566 45.833 0.00 0.00 41.22 2.10
6160 6342 5.627735 GCCAATGAGGAAGAGTAAGACATGA 60.628 44.000 0.00 0.00 41.22 3.07
6218 6400 4.339530 GCCATTTTCCATTCCCTACTCTTC 59.660 45.833 0.00 0.00 0.00 2.87
6225 6407 3.969976 CCATTCCCTACTCTTCCTCATCA 59.030 47.826 0.00 0.00 0.00 3.07
6230 6412 3.888930 CCCTACTCTTCCTCATCAGAGTC 59.111 52.174 5.11 0.00 45.55 3.36
6231 6413 3.888930 CCTACTCTTCCTCATCAGAGTCC 59.111 52.174 5.11 0.00 45.55 3.85
6235 6417 0.532573 TTCCTCATCAGAGTCCGTGC 59.467 55.000 0.00 0.00 40.40 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.270839 GAGCATCTGCAGGCGCTC 61.271 66.667 29.88 29.88 45.16 5.03
42 43 2.960659 CTCGAGCATCTGCAGGCG 60.961 66.667 15.13 10.27 45.16 5.52
43 44 3.270839 GCTCGAGCATCTGCAGGC 61.271 66.667 31.91 10.56 45.16 4.85
44 45 2.960659 CGCTCGAGCATCTGCAGG 60.961 66.667 34.69 13.81 45.16 4.85
45 46 3.628193 GCGCTCGAGCATCTGCAG 61.628 66.667 34.69 18.62 45.16 4.41
60 61 4.560856 CTCCTCTTCGGCCTCGCG 62.561 72.222 0.00 0.00 36.13 5.87
61 62 4.214327 CCTCCTCTTCGGCCTCGC 62.214 72.222 0.00 0.00 36.13 5.03
62 63 4.214327 GCCTCCTCTTCGGCCTCG 62.214 72.222 0.00 0.00 40.43 4.63
63 64 4.214327 CGCCTCCTCTTCGGCCTC 62.214 72.222 0.00 0.00 43.38 4.70
111 112 4.899239 CCAGAGGGCGGCGATGTC 62.899 72.222 12.98 2.40 0.00 3.06
113 114 4.161295 TTCCAGAGGGCGGCGATG 62.161 66.667 12.98 0.96 0.00 3.84
114 115 4.162690 GTTCCAGAGGGCGGCGAT 62.163 66.667 12.98 0.00 0.00 4.58
118 119 4.760047 CCGTGTTCCAGAGGGCGG 62.760 72.222 0.00 0.00 0.00 6.13
121 122 3.530910 AACGCCGTGTTCCAGAGGG 62.531 63.158 0.00 0.00 35.27 4.30
122 123 2.030562 AACGCCGTGTTCCAGAGG 59.969 61.111 0.00 0.00 35.27 3.69
129 130 4.636435 CCAGGGGAACGCCGTGTT 62.636 66.667 0.00 0.00 44.92 3.32
158 159 4.194720 AGGTCGATCAGCGTCGGC 62.195 66.667 0.00 7.19 44.95 5.54
159 160 2.024871 GAGGTCGATCAGCGTCGG 59.975 66.667 0.00 0.00 41.74 4.79
160 161 1.583967 GTGAGGTCGATCAGCGTCG 60.584 63.158 0.00 3.31 42.74 5.12
161 162 1.226717 GGTGAGGTCGATCAGCGTC 60.227 63.158 0.00 0.00 37.88 5.19
162 163 2.885861 GGTGAGGTCGATCAGCGT 59.114 61.111 0.00 0.00 37.88 5.07
164 165 2.105128 CCGGTGAGGTCGATCAGC 59.895 66.667 7.92 7.92 42.83 4.26
165 166 2.105128 GCCGGTGAGGTCGATCAG 59.895 66.667 1.90 0.00 43.70 2.90
166 167 3.458163 GGCCGGTGAGGTCGATCA 61.458 66.667 1.90 0.00 43.70 2.92
199 200 4.124351 TAGGCGTCCTCGTTGGCG 62.124 66.667 1.46 0.00 39.49 5.69
200 201 2.202756 CTAGGCGTCCTCGTTGGC 60.203 66.667 1.46 0.00 39.49 4.52
201 202 2.494918 CCTAGGCGTCCTCGTTGG 59.505 66.667 0.00 0.00 39.49 3.77
202 203 2.494918 CCCTAGGCGTCCTCGTTG 59.505 66.667 2.05 0.00 39.49 4.10
203 204 3.459063 GCCCTAGGCGTCCTCGTT 61.459 66.667 2.05 0.00 39.62 3.85
213 214 3.701604 GACGACGTGCTGCCCTAGG 62.702 68.421 4.58 0.06 0.00 3.02
214 215 1.374343 TAGACGACGTGCTGCCCTAG 61.374 60.000 4.58 0.00 0.00 3.02
215 216 1.374343 CTAGACGACGTGCTGCCCTA 61.374 60.000 4.58 0.00 0.00 3.53
216 217 2.675423 TAGACGACGTGCTGCCCT 60.675 61.111 4.58 0.00 0.00 5.19
217 218 2.202623 CTAGACGACGTGCTGCCC 60.203 66.667 4.58 0.00 0.00 5.36
218 219 0.666577 AAACTAGACGACGTGCTGCC 60.667 55.000 4.58 0.00 0.00 4.85
219 220 1.137513 AAAACTAGACGACGTGCTGC 58.862 50.000 4.58 0.00 0.00 5.25
220 221 3.979495 ACTAAAAACTAGACGACGTGCTG 59.021 43.478 4.58 0.00 0.00 4.41
221 222 3.979495 CACTAAAAACTAGACGACGTGCT 59.021 43.478 4.58 5.19 0.00 4.40
222 223 3.732721 ACACTAAAAACTAGACGACGTGC 59.267 43.478 4.58 0.00 0.00 5.34
223 224 5.878261 AACACTAAAAACTAGACGACGTG 57.122 39.130 4.58 0.00 0.00 4.49
224 225 7.985634 TTAAACACTAAAAACTAGACGACGT 57.014 32.000 0.00 0.00 0.00 4.34
225 226 9.298113 CAATTAAACACTAAAAACTAGACGACG 57.702 33.333 0.00 0.00 0.00 5.12
239 240 9.733556 AGTCCACATTACATCAATTAAACACTA 57.266 29.630 0.00 0.00 0.00 2.74
240 241 8.635765 AGTCCACATTACATCAATTAAACACT 57.364 30.769 0.00 0.00 0.00 3.55
241 242 9.691362 AAAGTCCACATTACATCAATTAAACAC 57.309 29.630 0.00 0.00 0.00 3.32
242 243 9.906660 GAAAGTCCACATTACATCAATTAAACA 57.093 29.630 0.00 0.00 0.00 2.83
243 244 9.906660 TGAAAGTCCACATTACATCAATTAAAC 57.093 29.630 0.00 0.00 0.00 2.01
244 245 9.906660 GTGAAAGTCCACATTACATCAATTAAA 57.093 29.630 0.00 0.00 37.04 1.52
245 246 8.519526 GGTGAAAGTCCACATTACATCAATTAA 58.480 33.333 0.00 0.00 38.74 1.40
246 247 7.148323 CGGTGAAAGTCCACATTACATCAATTA 60.148 37.037 0.00 0.00 38.74 1.40
247 248 6.349280 CGGTGAAAGTCCACATTACATCAATT 60.349 38.462 0.00 0.00 38.74 2.32
248 249 5.123820 CGGTGAAAGTCCACATTACATCAAT 59.876 40.000 0.00 0.00 38.74 2.57
249 250 4.454161 CGGTGAAAGTCCACATTACATCAA 59.546 41.667 0.00 0.00 38.74 2.57
250 251 4.000325 CGGTGAAAGTCCACATTACATCA 59.000 43.478 0.00 0.00 38.74 3.07
251 252 3.374058 CCGGTGAAAGTCCACATTACATC 59.626 47.826 0.00 0.00 38.74 3.06
252 253 3.343617 CCGGTGAAAGTCCACATTACAT 58.656 45.455 0.00 0.00 38.74 2.29
253 254 2.773487 CCGGTGAAAGTCCACATTACA 58.227 47.619 0.00 0.00 38.74 2.41
254 255 1.467342 GCCGGTGAAAGTCCACATTAC 59.533 52.381 1.90 0.00 38.74 1.89
255 256 1.612199 GGCCGGTGAAAGTCCACATTA 60.612 52.381 1.90 0.00 38.74 1.90
256 257 0.893727 GGCCGGTGAAAGTCCACATT 60.894 55.000 1.90 0.00 38.74 2.71
257 258 1.303317 GGCCGGTGAAAGTCCACAT 60.303 57.895 1.90 0.00 38.74 3.21
258 259 1.990160 AAGGCCGGTGAAAGTCCACA 61.990 55.000 1.90 0.00 38.74 4.17
259 260 1.228154 AAGGCCGGTGAAAGTCCAC 60.228 57.895 1.90 0.00 36.37 4.02
260 261 1.072505 GAAGGCCGGTGAAAGTCCA 59.927 57.895 1.90 0.00 0.00 4.02
261 262 2.033194 CGAAGGCCGGTGAAAGTCC 61.033 63.158 1.90 0.00 33.91 3.85
262 263 1.301479 ACGAAGGCCGGTGAAAGTC 60.301 57.895 1.90 0.00 43.93 3.01
263 264 1.597027 CACGAAGGCCGGTGAAAGT 60.597 57.895 16.62 0.00 43.93 2.66
264 265 2.325082 CCACGAAGGCCGGTGAAAG 61.325 63.158 21.42 5.83 43.93 2.62
265 266 2.281208 CCACGAAGGCCGGTGAAA 60.281 61.111 21.42 0.00 43.93 2.69
274 275 1.133025 CATAAAAGCCAGCCACGAAGG 59.867 52.381 0.00 0.00 41.84 3.46
275 276 1.812571 ACATAAAAGCCAGCCACGAAG 59.187 47.619 0.00 0.00 0.00 3.79
276 277 1.904287 ACATAAAAGCCAGCCACGAA 58.096 45.000 0.00 0.00 0.00 3.85
277 278 1.904287 AACATAAAAGCCAGCCACGA 58.096 45.000 0.00 0.00 0.00 4.35
278 279 2.723124 AAACATAAAAGCCAGCCACG 57.277 45.000 0.00 0.00 0.00 4.94
279 280 8.541133 TTTAATTAAACATAAAAGCCAGCCAC 57.459 30.769 6.54 0.00 0.00 5.01
280 281 9.160496 CATTTAATTAAACATAAAAGCCAGCCA 57.840 29.630 12.74 0.00 0.00 4.75
281 282 8.122330 GCATTTAATTAAACATAAAAGCCAGCC 58.878 33.333 12.74 0.00 32.48 4.85
282 283 8.663911 TGCATTTAATTAAACATAAAAGCCAGC 58.336 29.630 12.74 4.37 35.80 4.85
341 342 0.809385 TTTCGTCGGTGTGCCAAAAA 59.191 45.000 0.00 0.00 34.09 1.94
342 343 1.025812 ATTTCGTCGGTGTGCCAAAA 58.974 45.000 0.00 0.00 34.09 2.44
343 344 0.309302 CATTTCGTCGGTGTGCCAAA 59.691 50.000 0.00 0.00 34.09 3.28
344 345 1.511318 CCATTTCGTCGGTGTGCCAA 61.511 55.000 0.00 0.00 34.09 4.52
345 346 1.963855 CCATTTCGTCGGTGTGCCA 60.964 57.895 0.00 0.00 34.09 4.92
346 347 2.686816 CCCATTTCGTCGGTGTGCC 61.687 63.158 0.00 0.00 0.00 5.01
347 348 1.908066 GACCCATTTCGTCGGTGTGC 61.908 60.000 0.00 0.00 0.00 4.57
348 349 2.159181 GACCCATTTCGTCGGTGTG 58.841 57.895 0.00 0.00 0.00 3.82
349 350 4.687464 GACCCATTTCGTCGGTGT 57.313 55.556 0.00 0.00 0.00 4.16
354 355 2.822701 GGCCCGACCCATTTCGTC 60.823 66.667 0.00 0.00 37.29 4.20
355 356 3.622060 CTGGCCCGACCCATTTCGT 62.622 63.158 0.00 0.00 37.29 3.85
356 357 2.824041 CTGGCCCGACCCATTTCG 60.824 66.667 0.00 0.00 37.83 3.46
357 358 3.140814 GCTGGCCCGACCCATTTC 61.141 66.667 0.00 0.00 37.83 2.17
386 387 4.025401 CTGTGTTTGGGTCGGCGC 62.025 66.667 0.00 0.00 0.00 6.53
387 388 4.025401 GCTGTGTTTGGGTCGGCG 62.025 66.667 0.00 0.00 0.00 6.46
388 389 4.025401 CGCTGTGTTTGGGTCGGC 62.025 66.667 0.00 0.00 0.00 5.54
389 390 4.025401 GCGCTGTGTTTGGGTCGG 62.025 66.667 0.00 0.00 0.00 4.79
390 391 4.025401 GGCGCTGTGTTTGGGTCG 62.025 66.667 7.64 0.00 0.00 4.79
391 392 4.025401 CGGCGCTGTGTTTGGGTC 62.025 66.667 8.45 0.00 0.00 4.46
394 395 4.025401 GTCCGGCGCTGTGTTTGG 62.025 66.667 16.49 0.00 0.00 3.28
395 396 4.368808 CGTCCGGCGCTGTGTTTG 62.369 66.667 16.49 0.00 0.00 2.93
396 397 4.903010 ACGTCCGGCGCTGTGTTT 62.903 61.111 16.49 0.00 46.11 2.83
397 398 4.903010 AACGTCCGGCGCTGTGTT 62.903 61.111 16.49 13.60 46.11 3.32
398 399 4.903010 AAACGTCCGGCGCTGTGT 62.903 61.111 16.49 7.84 46.11 3.72
399 400 4.368808 CAAACGTCCGGCGCTGTG 62.369 66.667 16.49 6.93 46.11 3.66
400 401 4.903010 ACAAACGTCCGGCGCTGT 62.903 61.111 16.49 16.04 46.11 4.40
401 402 4.368808 CACAAACGTCCGGCGCTG 62.369 66.667 9.96 9.96 46.11 5.18
402 403 4.903010 ACACAAACGTCCGGCGCT 62.903 61.111 16.48 3.50 46.11 5.92
403 404 4.364409 GACACAAACGTCCGGCGC 62.364 66.667 16.48 0.00 46.11 6.53
404 405 3.708734 GGACACAAACGTCCGGCG 61.709 66.667 15.25 15.25 45.77 6.46
409 410 3.708734 CCGGCGGACACAAACGTC 61.709 66.667 24.41 0.00 35.03 4.34
426 427 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
427 428 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
429 430 0.317519 GCTTTTGTCCGTTTGGGTCG 60.318 55.000 0.00 0.00 37.00 4.79
430 431 0.317519 CGCTTTTGTCCGTTTGGGTC 60.318 55.000 0.00 0.00 37.00 4.46
431 432 1.731093 CGCTTTTGTCCGTTTGGGT 59.269 52.632 0.00 0.00 37.00 4.51
432 433 1.660264 GCGCTTTTGTCCGTTTGGG 60.660 57.895 0.00 0.00 35.24 4.12
433 434 1.660264 GGCGCTTTTGTCCGTTTGG 60.660 57.895 7.64 0.00 0.00 3.28
434 435 2.008697 CGGCGCTTTTGTCCGTTTG 61.009 57.895 7.64 0.00 38.47 2.93
435 436 2.330041 CGGCGCTTTTGTCCGTTT 59.670 55.556 7.64 0.00 38.47 3.60
439 440 4.084888 CGGACGGCGCTTTTGTCC 62.085 66.667 22.77 22.77 46.91 4.02
440 441 2.383027 AAACGGACGGCGCTTTTGTC 62.383 55.000 6.90 10.54 0.00 3.18
441 442 2.474612 AAACGGACGGCGCTTTTGT 61.475 52.632 6.90 0.34 0.00 2.83
442 443 2.008697 CAAACGGACGGCGCTTTTG 61.009 57.895 6.90 7.73 0.00 2.44
443 444 2.330041 CAAACGGACGGCGCTTTT 59.670 55.556 6.90 0.00 0.00 2.27
444 445 3.656045 CCAAACGGACGGCGCTTT 61.656 61.111 6.90 0.00 0.00 3.51
461 462 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
462 463 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
465 466 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
466 467 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
467 468 1.676014 CCTTAGAGCAACTCCAACGGG 60.676 57.143 0.00 0.00 0.00 5.28
468 469 1.002087 ACCTTAGAGCAACTCCAACGG 59.998 52.381 0.00 0.00 0.00 4.44
469 470 2.457366 ACCTTAGAGCAACTCCAACG 57.543 50.000 0.00 0.00 0.00 4.10
470 471 6.262496 ACTTTTTACCTTAGAGCAACTCCAAC 59.738 38.462 0.00 0.00 0.00 3.77
471 472 6.362248 ACTTTTTACCTTAGAGCAACTCCAA 58.638 36.000 0.00 0.00 0.00 3.53
472 473 5.937111 ACTTTTTACCTTAGAGCAACTCCA 58.063 37.500 0.00 0.00 0.00 3.86
473 474 6.231951 AGACTTTTTACCTTAGAGCAACTCC 58.768 40.000 0.00 0.00 0.00 3.85
474 475 8.828688 TTAGACTTTTTACCTTAGAGCAACTC 57.171 34.615 0.00 0.00 0.00 3.01
475 476 9.053840 GTTTAGACTTTTTACCTTAGAGCAACT 57.946 33.333 0.00 0.00 0.00 3.16
476 477 9.053840 AGTTTAGACTTTTTACCTTAGAGCAAC 57.946 33.333 0.00 0.00 29.87 4.17
477 478 9.623000 AAGTTTAGACTTTTTACCTTAGAGCAA 57.377 29.630 0.00 0.00 43.48 3.91
504 505 9.807649 GATGTTCTTGGTTTGCTAAAATATGAT 57.192 29.630 0.00 0.00 0.00 2.45
516 517 4.383850 TTGGTGTGATGTTCTTGGTTTG 57.616 40.909 0.00 0.00 0.00 2.93
546 547 8.239998 CCTTATTCTTTTGAGGATCTGTGTTTC 58.760 37.037 0.00 0.00 34.92 2.78
552 559 6.118170 TCAGCCTTATTCTTTTGAGGATCTG 58.882 40.000 0.00 0.00 34.92 2.90
557 564 8.455903 TTCATATCAGCCTTATTCTTTTGAGG 57.544 34.615 0.00 0.00 0.00 3.86
606 613 7.472334 ACAAGATTGCAAGTATCCAAAGAAT 57.528 32.000 4.94 0.00 0.00 2.40
607 614 6.899393 ACAAGATTGCAAGTATCCAAAGAA 57.101 33.333 4.94 0.00 0.00 2.52
644 651 8.958506 GGTGTAGTTATTCTCTCAGAAAGTAGA 58.041 37.037 0.00 0.00 37.82 2.59
645 652 8.740906 TGGTGTAGTTATTCTCTCAGAAAGTAG 58.259 37.037 0.00 0.00 37.82 2.57
646 653 8.645814 TGGTGTAGTTATTCTCTCAGAAAGTA 57.354 34.615 0.00 0.00 37.82 2.24
647 654 7.233757 ACTGGTGTAGTTATTCTCTCAGAAAGT 59.766 37.037 0.00 0.00 35.26 2.66
648 655 7.543868 CACTGGTGTAGTTATTCTCTCAGAAAG 59.456 40.741 0.00 0.00 36.12 2.62
649 656 7.378966 CACTGGTGTAGTTATTCTCTCAGAAA 58.621 38.462 0.00 0.00 36.12 2.52
650 657 6.572509 GCACTGGTGTAGTTATTCTCTCAGAA 60.573 42.308 2.64 0.00 37.60 3.02
651 658 5.105716 GCACTGGTGTAGTTATTCTCTCAGA 60.106 44.000 2.64 0.00 37.60 3.27
652 659 5.105752 GCACTGGTGTAGTTATTCTCTCAG 58.894 45.833 2.64 0.00 37.60 3.35
653 660 4.526650 TGCACTGGTGTAGTTATTCTCTCA 59.473 41.667 2.64 0.00 37.60 3.27
654 661 5.073311 TGCACTGGTGTAGTTATTCTCTC 57.927 43.478 2.64 0.00 37.60 3.20
655 662 5.683876 ATGCACTGGTGTAGTTATTCTCT 57.316 39.130 0.00 0.00 37.60 3.10
656 663 5.874810 TGAATGCACTGGTGTAGTTATTCTC 59.125 40.000 0.00 0.00 39.19 2.87
657 664 5.804639 TGAATGCACTGGTGTAGTTATTCT 58.195 37.500 0.00 0.00 39.19 2.40
658 665 6.683974 ATGAATGCACTGGTGTAGTTATTC 57.316 37.500 0.00 0.00 39.04 1.75
659 666 8.574251 TTTATGAATGCACTGGTGTAGTTATT 57.426 30.769 0.00 0.00 37.60 1.40
660 667 8.574251 TTTTATGAATGCACTGGTGTAGTTAT 57.426 30.769 0.00 2.78 37.60 1.89
661 668 7.987750 TTTTATGAATGCACTGGTGTAGTTA 57.012 32.000 0.00 0.00 37.60 2.24
662 669 6.892658 TTTTATGAATGCACTGGTGTAGTT 57.107 33.333 0.00 0.00 37.60 2.24
663 670 8.623903 CATATTTTATGAATGCACTGGTGTAGT 58.376 33.333 0.00 0.00 41.36 2.73
664 671 8.077991 CCATATTTTATGAATGCACTGGTGTAG 58.922 37.037 0.00 0.00 0.00 2.74
665 672 7.559533 ACCATATTTTATGAATGCACTGGTGTA 59.440 33.333 0.00 0.00 32.33 2.90
1055 1062 7.786178 ACATCTAGCGAACATTAGCAATAAA 57.214 32.000 0.00 0.00 35.48 1.40
1065 1072 6.161855 TCAGGAATTACATCTAGCGAACAT 57.838 37.500 0.00 0.00 0.00 2.71
1674 1687 5.809001 ACAGGATGAGCACAGAAAGAAATA 58.191 37.500 0.00 0.00 39.69 1.40
1695 1708 8.684386 TCTAGAACCAACACAATATGAAAACA 57.316 30.769 0.00 0.00 0.00 2.83
2304 2317 5.856986 CGGATCACTAGTGTACATTAATCCG 59.143 44.000 29.79 29.79 44.69 4.18
2357 2370 2.279582 ATCCTTTAGTGCGTGAGACG 57.720 50.000 0.00 0.00 45.88 4.18
2499 2512 1.625818 CTTCTGCCCTCCAGTACAGTT 59.374 52.381 0.00 0.00 42.38 3.16
2672 2685 8.308851 TGGACATCCAACAATCATTAAATCAT 57.691 30.769 0.00 0.00 44.35 2.45
2673 2686 7.614974 TCTGGACATCCAACAATCATTAAATCA 59.385 33.333 1.50 0.00 46.97 2.57
2686 2699 5.491982 AGTTGACTATTCTGGACATCCAAC 58.508 41.667 1.50 0.00 46.97 3.77
2688 2701 8.004801 TCTATAGTTGACTATTCTGGACATCCA 58.995 37.037 8.80 0.00 40.55 3.41
2689 2702 8.410673 TCTATAGTTGACTATTCTGGACATCC 57.589 38.462 8.80 0.00 39.66 3.51
2721 2734 4.999950 GCATCATTGAAGATACCCTAGTGG 59.000 45.833 0.00 0.00 41.37 4.00
2731 2744 6.753180 ACGTACATCTAGCATCATTGAAGAT 58.247 36.000 0.00 0.00 31.11 2.40
2733 2746 7.930513 TTACGTACATCTAGCATCATTGAAG 57.069 36.000 0.00 0.00 0.00 3.02
2784 2797 5.200368 ACTGTAAAGTGGCCTGAAATTTG 57.800 39.130 3.32 0.00 0.00 2.32
2802 2815 9.868277 TTATCTTCACAAAACAATGAAAACTGT 57.132 25.926 0.00 0.00 34.52 3.55
2863 2877 7.448777 TCTGAGTGTCTTAACATACTGAGAAGT 59.551 37.037 0.00 0.00 37.81 3.01
2864 2878 7.821652 TCTGAGTGTCTTAACATACTGAGAAG 58.178 38.462 0.00 0.00 37.81 2.85
2865 2879 7.761038 TCTGAGTGTCTTAACATACTGAGAA 57.239 36.000 0.00 0.00 37.81 2.87
2866 2880 7.448777 ACTTCTGAGTGTCTTAACATACTGAGA 59.551 37.037 0.00 0.00 37.81 3.27
2867 2881 7.540400 CACTTCTGAGTGTCTTAACATACTGAG 59.460 40.741 0.00 0.00 46.57 3.35
2868 2882 7.371159 CACTTCTGAGTGTCTTAACATACTGA 58.629 38.462 0.00 0.00 46.57 3.41
2869 2883 7.573916 CACTTCTGAGTGTCTTAACATACTG 57.426 40.000 0.00 0.00 46.57 2.74
3021 3035 6.287589 AGGACTATTCGACAGAAAGTTCAT 57.712 37.500 0.32 0.00 40.15 2.57
3042 3056 2.771089 TGTAGCAACAGAGCTTGAAGG 58.229 47.619 0.00 0.00 43.70 3.46
3089 3103 8.752187 ACTATTTCATAGCAATTGTGTTCCATT 58.248 29.630 7.40 0.00 36.30 3.16
3098 3112 8.752254 CAATGAGCAACTATTTCATAGCAATTG 58.248 33.333 0.00 0.00 36.30 2.32
3099 3113 8.472413 ACAATGAGCAACTATTTCATAGCAATT 58.528 29.630 0.00 0.00 36.30 2.32
3121 3135 4.743057 TGTCACTATAGAGCAGCACAAT 57.257 40.909 6.78 0.00 0.00 2.71
3264 3293 1.632589 TGCTGGAGAGTAGTGCAGAA 58.367 50.000 0.00 0.00 38.10 3.02
3298 3329 4.730949 TCGGTTAAGGTTAGATCACCAG 57.269 45.455 5.11 0.00 39.62 4.00
3300 3331 6.922407 GTCTAATCGGTTAAGGTTAGATCACC 59.078 42.308 3.46 0.00 36.09 4.02
3425 3457 8.115102 AGAACAGTTCTGTAACACATTAGTGCA 61.115 37.037 15.41 0.00 43.35 4.57
3571 3603 4.457257 CCTCTTCATCCAACTTTCTTGTCC 59.543 45.833 0.00 0.00 0.00 4.02
3574 3606 3.120060 CGCCTCTTCATCCAACTTTCTTG 60.120 47.826 0.00 0.00 0.00 3.02
3926 3960 4.639755 TGTCAATGACAATCGGCAATATGT 59.360 37.500 14.37 0.00 39.78 2.29
4108 4142 3.073356 CCAGGGAGAGTAGTAGACTAGGG 59.927 56.522 0.00 0.00 39.06 3.53
4160 4195 3.830178 TGATAACTTTCCTCACGGACAGA 59.170 43.478 1.83 0.00 39.07 3.41
4181 4216 0.979665 TTCTCTCCAAGCCTGGTCTG 59.020 55.000 0.15 0.00 43.97 3.51
4236 4271 6.259550 ACAGTTAAGACATGCCAGATTTTC 57.740 37.500 0.00 0.00 0.00 2.29
4374 4410 6.910972 GCAGACATGTGTAAATCATCATCTTG 59.089 38.462 1.15 0.00 0.00 3.02
4406 4526 8.926710 CCACTTTCTGTAAAAGAGTACATAGTG 58.073 37.037 4.64 0.00 37.43 2.74
4414 4534 6.483640 CACTAAGCCACTTTCTGTAAAAGAGT 59.516 38.462 4.64 0.00 35.91 3.24
4440 4560 2.290008 ACCGATACCAGTGAATGCAACA 60.290 45.455 0.00 0.00 0.00 3.33
4480 4603 6.093357 TCTGCGAAGTTTTCATATGCATGTAA 59.907 34.615 10.16 0.00 33.57 2.41
4517 4640 1.133976 AGCCTGTGAAAGTTCTGCACT 60.134 47.619 0.00 0.00 37.30 4.40
4534 4657 4.235762 TAGCGATTCGGCCCAGCC 62.236 66.667 8.34 0.00 46.75 4.85
4582 4705 0.859232 GCATATTCCACTACGCACGG 59.141 55.000 0.00 0.00 0.00 4.94
4592 4715 3.181434 GGAGTATTGGGTGGCATATTCCA 60.181 47.826 0.00 0.00 33.78 3.53
4605 4728 7.881142 TGTTTTGACAACTATTGGAGTATTGG 58.119 34.615 0.00 0.00 37.44 3.16
4606 4729 9.912634 ATTGTTTTGACAACTATTGGAGTATTG 57.087 29.630 0.00 0.00 37.44 1.90
4608 4731 9.912634 CAATTGTTTTGACAACTATTGGAGTAT 57.087 29.630 9.66 0.00 38.65 2.12
4609 4732 8.908903 ACAATTGTTTTGACAACTATTGGAGTA 58.091 29.630 17.94 0.00 42.99 2.59
4610 4733 7.781056 ACAATTGTTTTGACAACTATTGGAGT 58.219 30.769 17.94 1.04 42.99 3.85
4611 4734 8.137437 AGACAATTGTTTTGACAACTATTGGAG 58.863 33.333 13.36 0.50 42.99 3.86
4612 4735 8.006298 AGACAATTGTTTTGACAACTATTGGA 57.994 30.769 13.36 0.00 42.99 3.53
4630 4753 9.507329 TTTTCTCATCTTGTAGCTAAGACAATT 57.493 29.630 0.97 0.00 39.33 2.32
4660 4783 2.925578 TGTAAGACCGTACCGTCATG 57.074 50.000 15.32 0.00 35.07 3.07
4707 4831 1.522806 TGTGTGTTGCTCGTGTCCC 60.523 57.895 0.00 0.00 0.00 4.46
4710 4834 1.817941 GGGTGTGTGTTGCTCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
4727 4851 4.354071 TGTCATACATTCGCATTGTTGG 57.646 40.909 0.00 0.00 0.00 3.77
4750 4874 3.976701 CTTCCCCGCAGCGTTGGAT 62.977 63.158 20.48 0.00 0.00 3.41
4769 4893 4.004196 TGCTGATCTATTGCCATCTCTG 57.996 45.455 0.00 0.00 0.00 3.35
5276 5402 2.924757 TGCCATTGGAGATGCTCTAG 57.075 50.000 6.95 0.00 0.00 2.43
5280 5406 1.700955 GGATTGCCATTGGAGATGCT 58.299 50.000 6.95 0.00 0.00 3.79
5281 5407 0.313043 CGGATTGCCATTGGAGATGC 59.687 55.000 6.95 3.68 0.00 3.91
5282 5408 1.683943 ACGGATTGCCATTGGAGATG 58.316 50.000 6.95 0.00 0.00 2.90
5283 5409 3.576078 TTACGGATTGCCATTGGAGAT 57.424 42.857 6.95 0.00 0.00 2.75
5284 5410 3.358111 TTTACGGATTGCCATTGGAGA 57.642 42.857 6.95 0.00 0.00 3.71
5285 5411 4.654091 AATTTACGGATTGCCATTGGAG 57.346 40.909 6.95 0.00 0.00 3.86
5286 5412 5.174395 CAAAATTTACGGATTGCCATTGGA 58.826 37.500 6.95 0.00 0.00 3.53
5287 5413 4.934602 ACAAAATTTACGGATTGCCATTGG 59.065 37.500 0.00 0.00 0.00 3.16
5288 5414 5.063312 GGACAAAATTTACGGATTGCCATTG 59.937 40.000 0.00 0.00 0.00 2.82
5289 5415 5.175127 GGACAAAATTTACGGATTGCCATT 58.825 37.500 0.00 0.00 0.00 3.16
5290 5416 4.382577 GGGACAAAATTTACGGATTGCCAT 60.383 41.667 0.00 0.00 0.00 4.40
5291 5417 3.056465 GGGACAAAATTTACGGATTGCCA 60.056 43.478 0.00 0.00 0.00 4.92
5292 5418 3.517602 GGGACAAAATTTACGGATTGCC 58.482 45.455 0.00 0.00 0.00 4.52
5293 5419 3.175929 CGGGACAAAATTTACGGATTGC 58.824 45.455 0.00 0.00 0.00 3.56
5294 5420 3.175929 GCGGGACAAAATTTACGGATTG 58.824 45.455 0.00 0.00 0.00 2.67
5295 5421 2.820787 TGCGGGACAAAATTTACGGATT 59.179 40.909 0.00 0.00 0.00 3.01
5296 5422 2.162809 GTGCGGGACAAAATTTACGGAT 59.837 45.455 0.00 0.00 0.00 4.18
5297 5423 1.536331 GTGCGGGACAAAATTTACGGA 59.464 47.619 0.00 0.00 0.00 4.69
5301 5427 2.554893 GACAGGTGCGGGACAAAATTTA 59.445 45.455 1.14 0.00 0.00 1.40
5308 5434 4.314440 GCAGACAGGTGCGGGACA 62.314 66.667 1.14 0.00 32.74 4.02
5314 5440 0.249238 CTCTATCCGCAGACAGGTGC 60.249 60.000 0.00 0.00 40.29 5.01
5315 5441 0.387202 CCTCTATCCGCAGACAGGTG 59.613 60.000 0.00 0.00 0.00 4.00
5316 5442 0.259065 TCCTCTATCCGCAGACAGGT 59.741 55.000 0.00 0.00 0.00 4.00
5319 5445 2.234143 CTGATCCTCTATCCGCAGACA 58.766 52.381 0.00 0.00 33.22 3.41
5323 5449 1.621992 GGACTGATCCTCTATCCGCA 58.378 55.000 0.00 0.00 42.45 5.69
5329 5455 1.133482 TGATGGCGGACTGATCCTCTA 60.133 52.381 0.00 0.00 43.73 2.43
5331 5457 0.249657 GTGATGGCGGACTGATCCTC 60.250 60.000 0.00 0.00 43.73 3.71
5332 5458 1.826024 GTGATGGCGGACTGATCCT 59.174 57.895 0.00 0.00 43.73 3.24
5345 5471 1.890979 GCCTCCTGCATCCGTGATG 60.891 63.158 8.90 8.90 42.37 3.07
5347 5473 3.785859 GGCCTCCTGCATCCGTGA 61.786 66.667 0.00 0.00 43.89 4.35
5358 5484 2.511600 CGTTGGATGACGGCCTCC 60.512 66.667 5.48 5.48 39.27 4.30
5359 5485 2.292794 TAGCGTTGGATGACGGCCTC 62.293 60.000 0.00 0.00 42.98 4.70
5361 5487 1.883084 CTAGCGTTGGATGACGGCC 60.883 63.158 0.00 0.00 42.98 6.13
5362 5488 2.526120 GCTAGCGTTGGATGACGGC 61.526 63.158 0.00 0.00 42.98 5.68
5366 5492 2.202878 GCGGCTAGCGTTGGATGA 60.203 61.111 9.00 0.00 35.41 2.92
5378 5504 0.894141 TTGCCAAAATGTATGCGGCT 59.106 45.000 0.00 0.00 43.38 5.52
5411 5537 4.201513 CGTGTTTAATCGAATTTCGTCCGA 60.202 41.667 17.61 0.00 41.35 4.55
5427 5553 5.236282 TGTAATGAAATCCGGTCGTGTTTA 58.764 37.500 0.00 0.00 0.00 2.01
5436 5562 8.405531 AGTTGATGTAAATGTAATGAAATCCGG 58.594 33.333 0.00 0.00 0.00 5.14
5471 5638 3.306364 CCATTTAGACCTAGCCGGATGAG 60.306 52.174 5.05 0.00 36.31 2.90
5473 5640 2.368875 ACCATTTAGACCTAGCCGGATG 59.631 50.000 5.05 0.00 36.31 3.51
5474 5641 2.633481 GACCATTTAGACCTAGCCGGAT 59.367 50.000 5.05 0.00 36.31 4.18
5520 5687 4.818546 ACTTGAGTTCTCTTGGTTCATGTG 59.181 41.667 0.00 0.00 0.00 3.21
5521 5688 5.041191 ACTTGAGTTCTCTTGGTTCATGT 57.959 39.130 0.00 0.00 0.00 3.21
5539 5706 4.681942 CAGAACTAGAGACGGTGAAACTTG 59.318 45.833 0.00 0.00 36.74 3.16
5543 5710 2.029290 GGCAGAACTAGAGACGGTGAAA 60.029 50.000 0.00 0.00 0.00 2.69
5555 5722 1.821753 GAGAGCACTGAGGCAGAACTA 59.178 52.381 0.82 0.00 35.18 2.24
5561 5728 2.952293 GCTGGAGAGCACTGAGGCA 61.952 63.158 0.00 0.00 45.46 4.75
5603 5770 4.649705 TCACTTCCCGGGCCTCCA 62.650 66.667 18.49 0.00 0.00 3.86
5604 5771 3.327404 TTCACTTCCCGGGCCTCC 61.327 66.667 18.49 0.00 0.00 4.30
5612 5779 1.630878 AGGTGGACATCTTCACTTCCC 59.369 52.381 0.00 0.00 34.57 3.97
5623 5790 0.537188 GACGATGTGGAGGTGGACAT 59.463 55.000 0.00 0.00 35.46 3.06
5689 5856 1.681327 CTTCTCCCCTCCCGTCGAA 60.681 63.158 0.00 0.00 0.00 3.71
5702 5869 1.003233 AGAAAGGCCACCGCTTCTC 60.003 57.895 5.01 0.00 29.00 2.87
5785 5952 1.352156 GACGACCATGAAGCCGACAC 61.352 60.000 0.00 0.00 0.00 3.67
5796 5963 4.457496 CCCTGCTGCGACGACCAT 62.457 66.667 0.00 0.00 0.00 3.55
5807 5974 1.299976 CCGTTTTAGGAGCCCTGCT 59.700 57.895 4.16 0.00 43.88 4.24
5837 6004 1.782028 GCACAAGTCCGGACGCTTTT 61.782 55.000 28.26 14.72 36.20 2.27
5851 6018 2.287769 CATATCATGGTCCACGCACAA 58.712 47.619 0.00 0.00 0.00 3.33
5885 6052 6.769512 TGAGCCTTTGAGGTATATATGGTTC 58.230 40.000 0.00 0.00 37.80 3.62
5932 6099 5.528870 GGATGTTCGGTTTGTTCAAATTCT 58.471 37.500 1.33 0.00 0.00 2.40
6019 6197 9.379811 GATATAGACTAGGTTAACTTTCGAACG 57.620 37.037 5.42 0.00 0.00 3.95
6059 6238 2.664402 ACAACAAGGACTTGGAGCAT 57.336 45.000 15.72 0.00 44.45 3.79
6107 6286 2.839228 ACTTCACTTCCTAGGGCTCAT 58.161 47.619 9.46 0.00 0.00 2.90
6131 6310 1.707427 ACTCTTCCTCATTGGCAACCT 59.293 47.619 0.00 0.00 35.26 3.50
6153 6335 0.891373 CCAGTCCGTGTCTCATGTCT 59.109 55.000 0.00 0.00 0.00 3.41
6154 6336 0.737715 GCCAGTCCGTGTCTCATGTC 60.738 60.000 0.00 0.00 0.00 3.06
6155 6337 1.293498 GCCAGTCCGTGTCTCATGT 59.707 57.895 0.00 0.00 0.00 3.21
6160 6342 3.626924 GTGGGCCAGTCCGTGTCT 61.627 66.667 6.40 0.00 34.94 3.41
6203 6385 3.969976 TGATGAGGAAGAGTAGGGAATGG 59.030 47.826 0.00 0.00 0.00 3.16
6218 6400 1.142748 GGCACGGACTCTGATGAGG 59.857 63.158 0.00 0.00 44.29 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.