Multiple sequence alignment - TraesCS2D01G441700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G441700 chr2D 100.000 3242 0 0 1 3242 552071099 552074340 0.000000e+00 5987
1 TraesCS2D01G441700 chr2D 83.177 1385 191 19 968 2328 552106440 552107806 0.000000e+00 1229
2 TraesCS2D01G441700 chr2D 87.431 907 71 14 810 1716 552079959 552080822 0.000000e+00 1003
3 TraesCS2D01G441700 chr2D 84.919 557 69 5 1768 2322 552085526 552086069 1.700000e-152 549
4 TraesCS2D01G441700 chr2B 94.296 1911 86 9 889 2784 657656641 657654739 0.000000e+00 2904
5 TraesCS2D01G441700 chr2B 96.197 894 32 2 1 892 657658400 657657507 0.000000e+00 1461
6 TraesCS2D01G441700 chr2B 83.622 1386 179 26 968 2328 657781553 657782915 0.000000e+00 1258
7 TraesCS2D01G441700 chr2B 83.581 944 106 18 1285 2227 657436423 657435528 0.000000e+00 839
8 TraesCS2D01G441700 chr2B 80.270 1110 184 23 1236 2317 657475745 657474643 0.000000e+00 804
9 TraesCS2D01G441700 chr2B 85.584 437 42 10 803 1237 657489410 657488993 3.840000e-119 438
10 TraesCS2D01G441700 chr2B 83.421 380 48 9 908 1281 657718983 657719353 4.010000e-89 339
11 TraesCS2D01G441700 chr5D 96.636 327 11 0 2784 3110 297546756 297547082 7.910000e-151 544
12 TraesCS2D01G441700 chr5D 99.145 117 1 0 3123 3239 10919138 10919254 9.110000e-51 211
13 TraesCS2D01G441700 chr5D 97.479 119 3 0 3123 3241 316696576 316696458 1.520000e-48 204
14 TraesCS2D01G441700 chr3D 95.044 343 17 0 2783 3125 558913117 558913459 1.020000e-149 540
15 TraesCS2D01G441700 chr3D 99.130 115 1 0 3123 3237 181833898 181834012 1.180000e-49 207
16 TraesCS2D01G441700 chr3D 99.123 114 1 0 3123 3236 109200626 109200739 4.240000e-49 206
17 TraesCS2D01G441700 chr5B 94.721 341 18 0 2785 3125 10458948 10458608 6.160000e-147 531
18 TraesCS2D01G441700 chr5B 82.219 613 94 11 11 617 311547866 311547263 6.200000e-142 514
19 TraesCS2D01G441700 chr1D 82.222 630 94 13 10 629 435528797 435529418 7.970000e-146 527
20 TraesCS2D01G441700 chr1D 93.976 332 20 0 2783 3114 56312097 56311766 1.340000e-138 503
21 TraesCS2D01G441700 chr7D 94.428 341 19 0 2785 3125 271463957 271464297 2.870000e-145 525
22 TraesCS2D01G441700 chr7D 81.629 626 104 9 9 629 133886936 133887555 2.890000e-140 508
23 TraesCS2D01G441700 chr7D 81.470 626 103 9 13 632 628135111 628134493 4.830000e-138 501
24 TraesCS2D01G441700 chr7D 98.319 119 2 0 3123 3241 636597216 636597334 3.280000e-50 209
25 TraesCS2D01G441700 chr7D 98.305 118 2 0 3123 3240 555478869 555478752 1.180000e-49 207
26 TraesCS2D01G441700 chr7D 98.291 117 2 0 3123 3239 1311181 1311065 4.240000e-49 206
27 TraesCS2D01G441700 chr7D 98.291 117 2 0 3123 3239 360412001 360412117 4.240000e-49 206
28 TraesCS2D01G441700 chr4A 94.135 341 20 0 2785 3125 602932198 602932538 1.330000e-143 520
29 TraesCS2D01G441700 chr4A 92.676 355 24 2 2772 3125 621220661 621221014 8.020000e-141 510
30 TraesCS2D01G441700 chr4D 94.578 332 18 0 2783 3114 279149664 279149333 6.200000e-142 514
31 TraesCS2D01G441700 chr4D 92.375 341 26 0 2785 3125 478839237 478838897 1.350000e-133 486
32 TraesCS2D01G441700 chr5A 81.703 634 99 12 4 629 568057166 568056542 2.230000e-141 512
33 TraesCS2D01G441700 chr7B 81.675 633 99 15 10 634 748331710 748331087 8.020000e-141 510
34 TraesCS2D01G441700 chr6B 81.094 640 104 12 1 633 279006591 279005962 2.250000e-136 496
35 TraesCS2D01G441700 chr3A 81.221 639 99 15 11 638 111881147 111880519 2.250000e-136 496
36 TraesCS2D01G441700 chr2A 87.395 238 16 4 646 869 692747545 692747782 8.920000e-66 261
37 TraesCS2D01G441700 chr6D 98.305 118 2 0 3123 3240 172085261 172085378 1.180000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G441700 chr2D 552071099 552074340 3241 False 5987.0 5987 100.0000 1 3242 1 chr2D.!!$F1 3241
1 TraesCS2D01G441700 chr2D 552106440 552107806 1366 False 1229.0 1229 83.1770 968 2328 1 chr2D.!!$F4 1360
2 TraesCS2D01G441700 chr2D 552079959 552080822 863 False 1003.0 1003 87.4310 810 1716 1 chr2D.!!$F2 906
3 TraesCS2D01G441700 chr2D 552085526 552086069 543 False 549.0 549 84.9190 1768 2322 1 chr2D.!!$F3 554
4 TraesCS2D01G441700 chr2B 657654739 657658400 3661 True 2182.5 2904 95.2465 1 2784 2 chr2B.!!$R4 2783
5 TraesCS2D01G441700 chr2B 657781553 657782915 1362 False 1258.0 1258 83.6220 968 2328 1 chr2B.!!$F2 1360
6 TraesCS2D01G441700 chr2B 657435528 657436423 895 True 839.0 839 83.5810 1285 2227 1 chr2B.!!$R1 942
7 TraesCS2D01G441700 chr2B 657474643 657475745 1102 True 804.0 804 80.2700 1236 2317 1 chr2B.!!$R2 1081
8 TraesCS2D01G441700 chr5B 311547263 311547866 603 True 514.0 514 82.2190 11 617 1 chr5B.!!$R2 606
9 TraesCS2D01G441700 chr1D 435528797 435529418 621 False 527.0 527 82.2220 10 629 1 chr1D.!!$F1 619
10 TraesCS2D01G441700 chr7D 133886936 133887555 619 False 508.0 508 81.6290 9 629 1 chr7D.!!$F1 620
11 TraesCS2D01G441700 chr7D 628134493 628135111 618 True 501.0 501 81.4700 13 632 1 chr7D.!!$R3 619
12 TraesCS2D01G441700 chr5A 568056542 568057166 624 True 512.0 512 81.7030 4 629 1 chr5A.!!$R1 625
13 TraesCS2D01G441700 chr7B 748331087 748331710 623 True 510.0 510 81.6750 10 634 1 chr7B.!!$R1 624
14 TraesCS2D01G441700 chr6B 279005962 279006591 629 True 496.0 496 81.0940 1 633 1 chr6B.!!$R1 632
15 TraesCS2D01G441700 chr3A 111880519 111881147 628 True 496.0 496 81.2210 11 638 1 chr3A.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1818 0.451783 GCGGTCGATCAATTTGCCTT 59.548 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2797 3731 0.322456 TGGCAGACGGCAAAATAGCT 60.322 50.0 0.0 0.0 46.2 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 119 1.746615 CTTGCCGGTGTGAGGGATG 60.747 63.158 1.90 0.00 0.00 3.51
918 1799 0.598562 CACCGATCCCGATCCTACAG 59.401 60.000 0.00 0.00 38.22 2.74
937 1818 0.451783 GCGGTCGATCAATTTGCCTT 59.548 50.000 0.00 0.00 0.00 4.35
1130 2011 1.407656 TTCAGGTCCGTCTGCAAGGT 61.408 55.000 0.00 0.00 34.91 3.50
1686 2589 2.182181 ACCGCCGCATCATCATGTG 61.182 57.895 0.00 0.00 39.85 3.21
1689 2592 0.165295 CGCCGCATCATCATGTGATC 59.835 55.000 7.54 0.00 45.76 2.92
1787 2690 0.321298 GCTCCAGGCTTTGTCCGTTA 60.321 55.000 0.00 0.00 38.06 3.18
1938 2853 2.159379 TGTTCTCGAGATGTGGATGTCG 60.159 50.000 17.44 0.00 44.66 4.35
1951 2866 3.829601 GTGGATGTCGGGAGATCTAGATT 59.170 47.826 6.70 0.00 43.27 2.40
2005 2920 0.608035 TGTCATCAACGGGCCCTTTC 60.608 55.000 22.43 4.87 0.00 2.62
2330 3252 9.827411 GTTATCTGAGTTAAATTGTCTGGTTTC 57.173 33.333 0.00 0.00 0.00 2.78
2333 3255 8.519799 TCTGAGTTAAATTGTCTGGTTTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
2334 3256 8.621286 TCTGAGTTAAATTGTCTGGTTTCTTTC 58.379 33.333 0.00 0.00 0.00 2.62
2336 3258 8.966868 TGAGTTAAATTGTCTGGTTTCTTTCTT 58.033 29.630 0.00 0.00 0.00 2.52
2337 3259 9.803315 GAGTTAAATTGTCTGGTTTCTTTCTTT 57.197 29.630 0.00 0.00 0.00 2.52
2372 3294 5.708948 TGCCTTGTTTCAATAATGTGCTAC 58.291 37.500 0.00 0.00 0.00 3.58
2419 3343 2.887152 GACTTCAGTGGGTGCTTGATTT 59.113 45.455 0.00 0.00 0.00 2.17
2420 3344 3.299503 ACTTCAGTGGGTGCTTGATTTT 58.700 40.909 0.00 0.00 0.00 1.82
2421 3345 3.068590 ACTTCAGTGGGTGCTTGATTTTG 59.931 43.478 0.00 0.00 0.00 2.44
2430 3354 4.394610 GGGTGCTTGATTTTGTTTGTTTGT 59.605 37.500 0.00 0.00 0.00 2.83
2433 3357 6.305160 GGTGCTTGATTTTGTTTGTTTGTTTG 59.695 34.615 0.00 0.00 0.00 2.93
2458 3382 0.106918 TTGCCTCTTTGTCCCACGTT 60.107 50.000 0.00 0.00 0.00 3.99
2473 3397 3.199677 CCACGTTGAACTTGACTTGGTA 58.800 45.455 3.15 0.00 32.32 3.25
2498 3422 3.365265 GCCCACGCCTGGTTTCAG 61.365 66.667 0.86 0.00 40.59 3.02
2508 3432 1.926511 CTGGTTTCAGCATGTCGGCC 61.927 60.000 0.00 0.00 37.40 6.13
2527 3451 2.124151 ACTGCGCCATTGGATCCC 60.124 61.111 9.90 0.00 0.00 3.85
2547 3471 0.245539 AACGTGGGGTGTCATACTCG 59.754 55.000 0.00 0.00 0.00 4.18
2548 3472 1.141019 CGTGGGGTGTCATACTCGG 59.859 63.158 0.00 0.00 0.00 4.63
2550 3474 0.611714 GTGGGGTGTCATACTCGGTT 59.388 55.000 0.00 0.00 0.00 4.44
2552 3476 0.107848 GGGGTGTCATACTCGGTTGG 60.108 60.000 0.00 0.00 0.00 3.77
2553 3477 0.743345 GGGTGTCATACTCGGTTGGC 60.743 60.000 0.00 0.00 0.00 4.52
2563 3487 1.676006 ACTCGGTTGGCAAGAGTTTTG 59.324 47.619 14.39 0.00 41.93 2.44
2582 3507 1.134551 TGTTTCTTTGCCCAAAGTGCC 60.135 47.619 17.48 8.98 45.88 5.01
2590 3515 1.133325 TGCCCAAAGTGCCTTTCCTAA 60.133 47.619 0.00 0.00 30.60 2.69
2610 3535 9.638239 TTCCTAAAATTAATGAAAGATGCACAC 57.362 29.630 0.00 0.00 0.00 3.82
2629 3554 7.539436 TGCACACTTCTCTTGTATACTCTAAG 58.461 38.462 4.17 0.00 0.00 2.18
2716 3641 9.026121 ACAATCAGATATTAGAGTATAACCGCT 57.974 33.333 0.00 0.00 0.00 5.52
2717 3642 9.295214 CAATCAGATATTAGAGTATAACCGCTG 57.705 37.037 0.00 0.00 0.00 5.18
2750 3684 8.140112 AGGATATTACTAAGGACATCATGGTC 57.860 38.462 0.00 0.00 37.06 4.02
2756 3690 3.634397 AAGGACATCATGGTCGACATT 57.366 42.857 18.91 0.07 37.84 2.71
2781 3715 8.641499 TGAATCTTCAACAAACACATTTAACC 57.359 30.769 0.00 0.00 33.55 2.85
2784 3718 8.816640 ATCTTCAACAAACACATTTAACCATC 57.183 30.769 0.00 0.00 0.00 3.51
2785 3719 7.776107 TCTTCAACAAACACATTTAACCATCA 58.224 30.769 0.00 0.00 0.00 3.07
2786 3720 7.704472 TCTTCAACAAACACATTTAACCATCAC 59.296 33.333 0.00 0.00 0.00 3.06
2787 3721 7.106439 TCAACAAACACATTTAACCATCACT 57.894 32.000 0.00 0.00 0.00 3.41
2788 3722 8.226819 TCAACAAACACATTTAACCATCACTA 57.773 30.769 0.00 0.00 0.00 2.74
2789 3723 8.132362 TCAACAAACACATTTAACCATCACTAC 58.868 33.333 0.00 0.00 0.00 2.73
2790 3724 7.575414 ACAAACACATTTAACCATCACTACA 57.425 32.000 0.00 0.00 0.00 2.74
2791 3725 7.648142 ACAAACACATTTAACCATCACTACAG 58.352 34.615 0.00 0.00 0.00 2.74
2792 3726 6.817765 AACACATTTAACCATCACTACAGG 57.182 37.500 0.00 0.00 0.00 4.00
2793 3727 6.121776 ACACATTTAACCATCACTACAGGA 57.878 37.500 0.00 0.00 0.00 3.86
2794 3728 6.539173 ACACATTTAACCATCACTACAGGAA 58.461 36.000 0.00 0.00 0.00 3.36
2795 3729 7.175104 ACACATTTAACCATCACTACAGGAAT 58.825 34.615 0.00 0.00 0.00 3.01
2796 3730 7.336931 ACACATTTAACCATCACTACAGGAATC 59.663 37.037 0.00 0.00 0.00 2.52
2797 3731 7.336679 CACATTTAACCATCACTACAGGAATCA 59.663 37.037 0.00 0.00 0.00 2.57
2798 3732 7.554118 ACATTTAACCATCACTACAGGAATCAG 59.446 37.037 0.00 0.00 0.00 2.90
2799 3733 3.550437 ACCATCACTACAGGAATCAGC 57.450 47.619 0.00 0.00 0.00 4.26
2800 3734 3.110705 ACCATCACTACAGGAATCAGCT 58.889 45.455 0.00 0.00 0.00 4.24
2801 3735 4.290093 ACCATCACTACAGGAATCAGCTA 58.710 43.478 0.00 0.00 0.00 3.32
2802 3736 4.904251 ACCATCACTACAGGAATCAGCTAT 59.096 41.667 0.00 0.00 0.00 2.97
2803 3737 5.367937 ACCATCACTACAGGAATCAGCTATT 59.632 40.000 0.00 0.00 0.00 1.73
2804 3738 6.126652 ACCATCACTACAGGAATCAGCTATTT 60.127 38.462 0.00 0.00 0.00 1.40
2805 3739 6.769822 CCATCACTACAGGAATCAGCTATTTT 59.230 38.462 0.00 0.00 0.00 1.82
2806 3740 7.255035 CCATCACTACAGGAATCAGCTATTTTG 60.255 40.741 0.00 0.00 0.00 2.44
2807 3741 5.586243 TCACTACAGGAATCAGCTATTTTGC 59.414 40.000 0.00 0.00 0.00 3.68
2808 3742 4.884164 ACTACAGGAATCAGCTATTTTGCC 59.116 41.667 0.00 0.00 0.00 4.52
2809 3743 2.684881 ACAGGAATCAGCTATTTTGCCG 59.315 45.455 0.00 0.00 0.00 5.69
2810 3744 2.684881 CAGGAATCAGCTATTTTGCCGT 59.315 45.455 0.00 0.00 0.00 5.68
2811 3745 2.945668 AGGAATCAGCTATTTTGCCGTC 59.054 45.455 0.00 0.00 0.00 4.79
2812 3746 2.945668 GGAATCAGCTATTTTGCCGTCT 59.054 45.455 0.00 0.00 0.00 4.18
2813 3747 3.242870 GGAATCAGCTATTTTGCCGTCTG 60.243 47.826 0.00 0.00 0.00 3.51
2814 3748 1.086696 TCAGCTATTTTGCCGTCTGC 58.913 50.000 0.00 0.00 41.77 4.26
2815 3749 0.099436 CAGCTATTTTGCCGTCTGCC 59.901 55.000 0.00 0.00 40.16 4.85
2816 3750 0.322456 AGCTATTTTGCCGTCTGCCA 60.322 50.000 0.00 0.00 40.16 4.92
2817 3751 0.179163 GCTATTTTGCCGTCTGCCAC 60.179 55.000 0.00 0.00 40.16 5.01
2836 3770 4.481112 GCGGACGGCAAAGGCATG 62.481 66.667 0.00 0.00 43.71 4.06
2837 3771 2.745884 CGGACGGCAAAGGCATGA 60.746 61.111 0.00 0.00 43.71 3.07
2838 3772 2.331893 CGGACGGCAAAGGCATGAA 61.332 57.895 0.00 0.00 43.71 2.57
2839 3773 1.212751 GGACGGCAAAGGCATGAAC 59.787 57.895 0.00 0.00 43.71 3.18
2840 3774 1.154225 GACGGCAAAGGCATGAACG 60.154 57.895 0.00 0.00 43.71 3.95
2841 3775 2.179018 CGGCAAAGGCATGAACGG 59.821 61.111 0.00 0.00 43.71 4.44
2842 3776 2.125952 GGCAAAGGCATGAACGGC 60.126 61.111 0.00 0.00 43.71 5.68
2843 3777 2.504681 GCAAAGGCATGAACGGCG 60.505 61.111 4.80 4.80 40.72 6.46
2844 3778 2.179018 CAAAGGCATGAACGGCGG 59.821 61.111 13.24 0.00 36.37 6.13
2845 3779 2.033448 AAAGGCATGAACGGCGGA 59.967 55.556 13.24 0.00 36.37 5.54
2846 3780 2.332654 AAAGGCATGAACGGCGGAC 61.333 57.895 13.24 5.13 36.37 4.79
2900 3834 4.476410 GCCTTTGCCGTTAGCCGC 62.476 66.667 0.00 0.00 42.71 6.53
2901 3835 4.160635 CCTTTGCCGTTAGCCGCG 62.161 66.667 0.00 0.00 42.71 6.46
2916 3850 4.103103 GCGGACGGCAAAAGGCTC 62.103 66.667 0.00 0.00 44.01 4.70
2917 3851 3.431725 CGGACGGCAAAAGGCTCC 61.432 66.667 0.00 0.00 44.01 4.70
2919 3853 3.431725 GACGGCAAAAGGCTCCGG 61.432 66.667 15.66 0.00 46.78 5.14
2923 3857 3.361977 GCAAAAGGCTCCGGCGAA 61.362 61.111 9.30 0.00 40.25 4.70
2924 3858 2.870372 CAAAAGGCTCCGGCGAAG 59.130 61.111 9.30 0.00 39.81 3.79
2925 3859 1.966451 CAAAAGGCTCCGGCGAAGT 60.966 57.895 9.30 0.00 39.81 3.01
2926 3860 0.672401 CAAAAGGCTCCGGCGAAGTA 60.672 55.000 9.30 0.00 39.81 2.24
2927 3861 0.391263 AAAAGGCTCCGGCGAAGTAG 60.391 55.000 9.30 0.89 39.81 2.57
2928 3862 2.240162 AAAGGCTCCGGCGAAGTAGG 62.240 60.000 9.30 0.00 39.81 3.18
2929 3863 4.893601 GGCTCCGGCGAAGTAGGC 62.894 72.222 9.30 8.89 39.81 3.93
2930 3864 3.839432 GCTCCGGCGAAGTAGGCT 61.839 66.667 9.30 0.00 34.19 4.58
2931 3865 2.487532 GCTCCGGCGAAGTAGGCTA 61.488 63.158 9.30 0.00 34.19 3.93
2932 3866 1.359475 CTCCGGCGAAGTAGGCTAC 59.641 63.158 16.93 16.93 34.19 3.58
2933 3867 2.025727 CCGGCGAAGTAGGCTACG 59.974 66.667 18.41 8.71 34.19 3.51
2934 3868 2.025727 CGGCGAAGTAGGCTACGG 59.974 66.667 18.41 12.85 34.19 4.02
2935 3869 2.768492 CGGCGAAGTAGGCTACGGT 61.768 63.158 18.41 10.98 34.19 4.83
2936 3870 1.439353 CGGCGAAGTAGGCTACGGTA 61.439 60.000 18.41 0.00 34.19 4.02
2937 3871 0.740737 GGCGAAGTAGGCTACGGTAA 59.259 55.000 18.41 0.00 0.00 2.85
2938 3872 1.134946 GGCGAAGTAGGCTACGGTAAA 59.865 52.381 18.41 0.00 0.00 2.01
2939 3873 2.188524 GCGAAGTAGGCTACGGTAAAC 58.811 52.381 18.41 4.64 0.00 2.01
2940 3874 2.415893 GCGAAGTAGGCTACGGTAAACA 60.416 50.000 18.41 0.00 0.00 2.83
2941 3875 3.432782 CGAAGTAGGCTACGGTAAACAG 58.567 50.000 18.41 2.96 0.00 3.16
2942 3876 2.955477 AGTAGGCTACGGTAAACAGC 57.045 50.000 18.41 0.00 34.48 4.40
2943 3877 2.454538 AGTAGGCTACGGTAAACAGCT 58.545 47.619 18.41 0.00 35.60 4.24
2944 3878 3.624777 AGTAGGCTACGGTAAACAGCTA 58.375 45.455 18.41 0.00 35.60 3.32
2945 3879 2.955477 AGGCTACGGTAAACAGCTAC 57.045 50.000 1.12 0.00 35.60 3.58
2946 3880 2.454538 AGGCTACGGTAAACAGCTACT 58.545 47.619 1.12 0.00 35.60 2.57
2947 3881 2.830321 AGGCTACGGTAAACAGCTACTT 59.170 45.455 1.12 0.00 35.60 2.24
2948 3882 3.260128 AGGCTACGGTAAACAGCTACTTT 59.740 43.478 1.12 0.00 35.60 2.66
2949 3883 3.370061 GGCTACGGTAAACAGCTACTTTG 59.630 47.826 1.12 0.00 35.60 2.77
2950 3884 3.992427 GCTACGGTAAACAGCTACTTTGT 59.008 43.478 0.00 0.00 32.46 2.83
2951 3885 4.091075 GCTACGGTAAACAGCTACTTTGTC 59.909 45.833 0.00 0.00 32.46 3.18
2952 3886 3.054878 ACGGTAAACAGCTACTTTGTCG 58.945 45.455 0.00 0.00 0.00 4.35
2953 3887 3.054878 CGGTAAACAGCTACTTTGTCGT 58.945 45.455 0.00 0.00 0.00 4.34
2954 3888 3.120782 CGGTAAACAGCTACTTTGTCGTC 59.879 47.826 0.00 0.00 0.00 4.20
2955 3889 4.304939 GGTAAACAGCTACTTTGTCGTCT 58.695 43.478 0.00 0.00 0.00 4.18
2956 3890 4.150098 GGTAAACAGCTACTTTGTCGTCTG 59.850 45.833 0.00 0.00 0.00 3.51
2957 3891 1.784525 ACAGCTACTTTGTCGTCTGC 58.215 50.000 0.00 0.00 0.00 4.26
2958 3892 1.341531 ACAGCTACTTTGTCGTCTGCT 59.658 47.619 0.00 0.00 0.00 4.24
2959 3893 2.224066 ACAGCTACTTTGTCGTCTGCTT 60.224 45.455 0.00 0.00 0.00 3.91
2960 3894 2.410053 CAGCTACTTTGTCGTCTGCTTC 59.590 50.000 0.00 0.00 0.00 3.86
2961 3895 1.727335 GCTACTTTGTCGTCTGCTTCC 59.273 52.381 0.00 0.00 0.00 3.46
2962 3896 1.986378 CTACTTTGTCGTCTGCTTCCG 59.014 52.381 0.00 0.00 0.00 4.30
2963 3897 0.600255 ACTTTGTCGTCTGCTTCCGG 60.600 55.000 0.00 0.00 0.00 5.14
2964 3898 1.291877 CTTTGTCGTCTGCTTCCGGG 61.292 60.000 0.00 0.00 0.00 5.73
2965 3899 3.876589 TTGTCGTCTGCTTCCGGGC 62.877 63.158 0.00 0.00 0.00 6.13
3013 3947 3.257561 CGCGGACGGCAATGAGAG 61.258 66.667 0.00 0.00 43.84 3.20
3014 3948 3.567797 GCGGACGGCAATGAGAGC 61.568 66.667 0.00 0.00 42.87 4.09
3015 3949 3.257561 CGGACGGCAATGAGAGCG 61.258 66.667 0.00 0.00 0.00 5.03
3016 3950 2.892425 GGACGGCAATGAGAGCGG 60.892 66.667 0.00 0.00 38.17 5.52
3017 3951 2.184322 GACGGCAATGAGAGCGGA 59.816 61.111 0.00 0.00 36.34 5.54
3018 3952 2.125512 ACGGCAATGAGAGCGGAC 60.126 61.111 0.00 0.00 36.34 4.79
3019 3953 2.125552 CGGCAATGAGAGCGGACA 60.126 61.111 0.00 0.00 34.65 4.02
3020 3954 2.169789 CGGCAATGAGAGCGGACAG 61.170 63.158 0.00 0.00 34.65 3.51
3041 3975 3.056952 CAATAATTGCGCTGTCAGTCC 57.943 47.619 9.73 0.00 0.00 3.85
3042 3976 1.290203 ATAATTGCGCTGTCAGTCCG 58.710 50.000 9.73 0.00 0.00 4.79
3043 3977 0.037697 TAATTGCGCTGTCAGTCCGT 60.038 50.000 9.73 0.00 0.00 4.69
3044 3978 0.884704 AATTGCGCTGTCAGTCCGTT 60.885 50.000 9.73 0.00 0.00 4.44
3045 3979 0.037697 ATTGCGCTGTCAGTCCGTTA 60.038 50.000 9.73 0.00 0.00 3.18
3046 3980 0.249531 TTGCGCTGTCAGTCCGTTAA 60.250 50.000 9.73 0.00 0.00 2.01
3047 3981 0.666274 TGCGCTGTCAGTCCGTTAAG 60.666 55.000 9.73 0.00 0.00 1.85
3048 3982 0.666577 GCGCTGTCAGTCCGTTAAGT 60.667 55.000 0.00 0.00 0.00 2.24
3049 3983 1.060713 CGCTGTCAGTCCGTTAAGTG 58.939 55.000 0.93 0.00 0.00 3.16
3050 3984 1.429463 GCTGTCAGTCCGTTAAGTGG 58.571 55.000 0.93 0.00 0.00 4.00
3051 3985 1.429463 CTGTCAGTCCGTTAAGTGGC 58.571 55.000 0.00 0.00 0.00 5.01
3052 3986 1.000955 CTGTCAGTCCGTTAAGTGGCT 59.999 52.381 0.00 0.00 0.00 4.75
3053 3987 2.230508 CTGTCAGTCCGTTAAGTGGCTA 59.769 50.000 0.00 0.00 0.00 3.93
3054 3988 2.629137 TGTCAGTCCGTTAAGTGGCTAA 59.371 45.455 0.00 0.00 0.00 3.09
3055 3989 2.991866 GTCAGTCCGTTAAGTGGCTAAC 59.008 50.000 0.00 0.00 0.00 2.34
3059 3993 2.830264 CGTTAAGTGGCTAACGGCA 58.170 52.632 9.02 0.00 46.58 5.69
3060 3994 0.719465 CGTTAAGTGGCTAACGGCAG 59.281 55.000 9.02 0.00 46.58 4.85
3061 3995 2.594403 CGTTAAGTGGCTAACGGCAGG 61.594 57.143 9.02 0.00 46.58 4.85
3065 3999 3.646715 TGGCTAACGGCAGGCCTT 61.647 61.111 0.00 4.70 45.45 4.35
3066 4000 2.361230 GGCTAACGGCAGGCCTTT 60.361 61.111 0.00 8.02 44.01 3.11
3067 4001 2.700773 GGCTAACGGCAGGCCTTTG 61.701 63.158 0.00 0.00 44.01 2.77
3068 4002 2.877691 CTAACGGCAGGCCTTTGC 59.122 61.111 0.00 5.18 43.34 3.68
3086 4020 4.111016 CGTCCGCGGCAGACAGTA 62.111 66.667 23.51 0.00 33.70 2.74
3087 4021 2.260434 GTCCGCGGCAGACAGTAA 59.740 61.111 23.51 0.00 34.27 2.24
3088 4022 1.373748 GTCCGCGGCAGACAGTAAA 60.374 57.895 23.51 0.00 34.27 2.01
3089 4023 1.373748 TCCGCGGCAGACAGTAAAC 60.374 57.895 23.51 0.00 0.00 2.01
3090 4024 1.374252 CCGCGGCAGACAGTAAACT 60.374 57.895 14.67 0.00 0.00 2.66
3091 4025 0.949105 CCGCGGCAGACAGTAAACTT 60.949 55.000 14.67 0.00 0.00 2.66
3092 4026 0.865769 CGCGGCAGACAGTAAACTTT 59.134 50.000 0.00 0.00 0.00 2.66
3093 4027 1.136336 CGCGGCAGACAGTAAACTTTC 60.136 52.381 0.00 0.00 0.00 2.62
3094 4028 2.143925 GCGGCAGACAGTAAACTTTCT 58.856 47.619 0.00 0.00 33.60 2.52
3095 4029 3.323243 GCGGCAGACAGTAAACTTTCTA 58.677 45.455 0.00 0.00 31.75 2.10
3096 4030 3.368236 GCGGCAGACAGTAAACTTTCTAG 59.632 47.826 0.00 0.00 31.75 2.43
3097 4031 4.557205 CGGCAGACAGTAAACTTTCTAGT 58.443 43.478 0.00 0.00 31.75 2.57
3098 4032 4.386049 CGGCAGACAGTAAACTTTCTAGTG 59.614 45.833 0.00 0.00 31.75 2.74
3099 4033 5.298347 GGCAGACAGTAAACTTTCTAGTGT 58.702 41.667 0.00 0.00 35.97 3.55
3100 4034 5.405873 GGCAGACAGTAAACTTTCTAGTGTC 59.594 44.000 8.97 8.97 44.70 3.67
3105 4039 7.247929 ACAGTAAACTTTCTAGTGTCTTTGC 57.752 36.000 0.00 0.00 34.01 3.68
3106 4040 6.260271 ACAGTAAACTTTCTAGTGTCTTTGCC 59.740 38.462 0.00 0.00 34.01 4.52
3107 4041 4.813296 AAACTTTCTAGTGTCTTTGCCG 57.187 40.909 0.00 0.00 34.01 5.69
3108 4042 3.470645 ACTTTCTAGTGTCTTTGCCGT 57.529 42.857 0.00 0.00 31.99 5.68
3109 4043 3.391049 ACTTTCTAGTGTCTTTGCCGTC 58.609 45.455 0.00 0.00 31.99 4.79
3110 4044 3.069729 ACTTTCTAGTGTCTTTGCCGTCT 59.930 43.478 0.00 0.00 31.99 4.18
3111 4045 2.724977 TCTAGTGTCTTTGCCGTCTG 57.275 50.000 0.00 0.00 0.00 3.51
3112 4046 1.071605 CTAGTGTCTTTGCCGTCTGC 58.928 55.000 0.00 0.00 41.77 4.26
3113 4047 0.320421 TAGTGTCTTTGCCGTCTGCC 60.320 55.000 0.00 0.00 40.16 4.85
3114 4048 1.598130 GTGTCTTTGCCGTCTGCCT 60.598 57.895 0.00 0.00 40.16 4.75
3115 4049 1.148273 TGTCTTTGCCGTCTGCCTT 59.852 52.632 0.00 0.00 40.16 4.35
3116 4050 0.394938 TGTCTTTGCCGTCTGCCTTA 59.605 50.000 0.00 0.00 40.16 2.69
3117 4051 1.003118 TGTCTTTGCCGTCTGCCTTAT 59.997 47.619 0.00 0.00 40.16 1.73
3118 4052 1.398390 GTCTTTGCCGTCTGCCTTATG 59.602 52.381 0.00 0.00 40.16 1.90
3119 4053 1.277842 TCTTTGCCGTCTGCCTTATGA 59.722 47.619 0.00 0.00 40.16 2.15
3120 4054 2.092968 TCTTTGCCGTCTGCCTTATGAT 60.093 45.455 0.00 0.00 40.16 2.45
3121 4055 1.667236 TTGCCGTCTGCCTTATGATG 58.333 50.000 0.00 0.00 40.16 3.07
3122 4056 0.541392 TGCCGTCTGCCTTATGATGT 59.459 50.000 0.00 0.00 40.16 3.06
3123 4057 1.221414 GCCGTCTGCCTTATGATGTC 58.779 55.000 0.00 0.00 0.00 3.06
3124 4058 1.473257 GCCGTCTGCCTTATGATGTCA 60.473 52.381 0.00 0.00 0.00 3.58
3125 4059 2.477825 CCGTCTGCCTTATGATGTCAG 58.522 52.381 0.00 0.00 0.00 3.51
3126 4060 1.863454 CGTCTGCCTTATGATGTCAGC 59.137 52.381 0.00 0.00 0.00 4.26
3127 4061 2.216898 GTCTGCCTTATGATGTCAGCC 58.783 52.381 0.00 0.00 0.00 4.85
3128 4062 1.839354 TCTGCCTTATGATGTCAGCCA 59.161 47.619 0.00 0.00 0.00 4.75
3129 4063 2.158856 TCTGCCTTATGATGTCAGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
3130 4064 1.561076 TGCCTTATGATGTCAGCCAGT 59.439 47.619 0.00 0.00 0.00 4.00
3131 4065 2.025981 TGCCTTATGATGTCAGCCAGTT 60.026 45.455 0.00 0.00 0.00 3.16
3132 4066 2.615912 GCCTTATGATGTCAGCCAGTTC 59.384 50.000 0.00 0.00 0.00 3.01
3133 4067 3.683847 GCCTTATGATGTCAGCCAGTTCT 60.684 47.826 0.00 0.00 0.00 3.01
3134 4068 4.521146 CCTTATGATGTCAGCCAGTTCTT 58.479 43.478 0.00 0.00 0.00 2.52
3135 4069 4.946157 CCTTATGATGTCAGCCAGTTCTTT 59.054 41.667 0.00 0.00 0.00 2.52
3136 4070 5.163683 CCTTATGATGTCAGCCAGTTCTTTG 60.164 44.000 0.00 0.00 0.00 2.77
3137 4071 1.881973 TGATGTCAGCCAGTTCTTTGC 59.118 47.619 0.00 0.00 0.00 3.68
3138 4072 1.200948 GATGTCAGCCAGTTCTTTGCC 59.799 52.381 0.00 0.00 0.00 4.52
3139 4073 1.165907 TGTCAGCCAGTTCTTTGCCG 61.166 55.000 0.00 0.00 0.00 5.69
3140 4074 1.148273 TCAGCCAGTTCTTTGCCGT 59.852 52.632 0.00 0.00 0.00 5.68
3141 4075 0.884704 TCAGCCAGTTCTTTGCCGTC 60.885 55.000 0.00 0.00 0.00 4.79
3142 4076 1.148273 AGCCAGTTCTTTGCCGTCA 59.852 52.632 0.00 0.00 0.00 4.35
3143 4077 0.886490 AGCCAGTTCTTTGCCGTCAG 60.886 55.000 0.00 0.00 0.00 3.51
3144 4078 1.576421 CCAGTTCTTTGCCGTCAGC 59.424 57.895 0.00 0.00 44.14 4.26
3145 4079 0.886490 CCAGTTCTTTGCCGTCAGCT 60.886 55.000 0.00 0.00 44.23 4.24
3146 4080 0.947244 CAGTTCTTTGCCGTCAGCTT 59.053 50.000 0.00 0.00 44.23 3.74
3147 4081 1.334869 CAGTTCTTTGCCGTCAGCTTT 59.665 47.619 0.00 0.00 44.23 3.51
3148 4082 2.024414 AGTTCTTTGCCGTCAGCTTTT 58.976 42.857 0.00 0.00 44.23 2.27
3149 4083 2.119457 GTTCTTTGCCGTCAGCTTTTG 58.881 47.619 0.00 0.00 44.23 2.44
3150 4084 0.667993 TCTTTGCCGTCAGCTTTTGG 59.332 50.000 0.00 0.00 44.23 3.28
3151 4085 0.318955 CTTTGCCGTCAGCTTTTGGG 60.319 55.000 0.00 0.00 44.23 4.12
3152 4086 1.040339 TTTGCCGTCAGCTTTTGGGT 61.040 50.000 0.00 0.00 44.23 4.51
3153 4087 0.179015 TTGCCGTCAGCTTTTGGGTA 60.179 50.000 0.00 0.00 44.23 3.69
3154 4088 0.605319 TGCCGTCAGCTTTTGGGTAG 60.605 55.000 0.00 0.00 44.23 3.18
3155 4089 1.923227 GCCGTCAGCTTTTGGGTAGC 61.923 60.000 0.00 0.00 38.99 3.58
3161 4095 2.134789 AGCTTTTGGGTAGCTGATGG 57.865 50.000 0.00 0.00 46.71 3.51
3162 4096 0.457443 GCTTTTGGGTAGCTGATGGC 59.543 55.000 0.00 0.00 42.19 4.40
3163 4097 1.838112 CTTTTGGGTAGCTGATGGCA 58.162 50.000 0.00 0.00 44.79 4.92
3164 4098 2.170166 CTTTTGGGTAGCTGATGGCAA 58.830 47.619 0.00 0.00 44.79 4.52
3165 4099 2.300956 TTTGGGTAGCTGATGGCAAA 57.699 45.000 0.00 0.00 44.79 3.68
3166 4100 1.838112 TTGGGTAGCTGATGGCAAAG 58.162 50.000 0.00 0.00 44.79 2.77
3167 4101 0.991146 TGGGTAGCTGATGGCAAAGA 59.009 50.000 0.00 0.00 44.79 2.52
3168 4102 1.065199 TGGGTAGCTGATGGCAAAGAG 60.065 52.381 0.00 0.00 44.79 2.85
3169 4103 1.020437 GGTAGCTGATGGCAAAGAGC 58.980 55.000 0.00 7.47 44.79 4.09
3170 4104 1.407989 GGTAGCTGATGGCAAAGAGCT 60.408 52.381 18.56 18.56 44.05 4.09
3171 4105 2.363683 GTAGCTGATGGCAAAGAGCTT 58.636 47.619 19.41 7.77 41.92 3.74
3172 4106 1.461559 AGCTGATGGCAAAGAGCTTC 58.538 50.000 11.30 0.00 44.79 3.86
3173 4107 1.004511 AGCTGATGGCAAAGAGCTTCT 59.995 47.619 11.30 0.00 44.79 2.85
3174 4108 1.817447 GCTGATGGCAAAGAGCTTCTT 59.183 47.619 4.85 0.00 44.79 2.52
3175 4109 2.230750 GCTGATGGCAAAGAGCTTCTTT 59.769 45.455 4.85 5.61 46.75 2.52
3182 4116 2.262423 AAAGAGCTTCTTTGCCGTCT 57.738 45.000 9.46 0.00 44.34 4.18
3183 4117 1.517242 AAGAGCTTCTTTGCCGTCTG 58.483 50.000 0.00 0.00 31.57 3.51
3184 4118 0.952984 AGAGCTTCTTTGCCGTCTGC 60.953 55.000 0.00 0.00 41.77 4.26
3185 4119 0.952984 GAGCTTCTTTGCCGTCTGCT 60.953 55.000 0.00 0.00 42.00 4.24
3186 4120 0.321671 AGCTTCTTTGCCGTCTGCTA 59.678 50.000 0.00 0.00 42.00 3.49
3187 4121 0.723981 GCTTCTTTGCCGTCTGCTAG 59.276 55.000 0.00 0.00 42.00 3.42
3188 4122 0.723981 CTTCTTTGCCGTCTGCTAGC 59.276 55.000 8.10 8.10 42.00 3.42
3189 4123 0.321671 TTCTTTGCCGTCTGCTAGCT 59.678 50.000 17.23 0.00 42.00 3.32
3190 4124 0.390340 TCTTTGCCGTCTGCTAGCTG 60.390 55.000 17.23 16.05 42.00 4.24
3191 4125 0.390340 CTTTGCCGTCTGCTAGCTGA 60.390 55.000 19.26 19.26 42.00 4.26
3192 4126 0.670546 TTTGCCGTCTGCTAGCTGAC 60.671 55.000 33.23 33.23 42.00 3.51
3196 4130 2.573869 GTCTGCTAGCTGACGGCA 59.426 61.111 30.98 7.33 44.79 5.69
3197 4131 1.079819 GTCTGCTAGCTGACGGCAA 60.080 57.895 30.98 6.66 44.79 4.52
3198 4132 0.670546 GTCTGCTAGCTGACGGCAAA 60.671 55.000 30.98 5.98 44.79 3.68
3199 4133 0.390340 TCTGCTAGCTGACGGCAAAG 60.390 55.000 19.26 6.65 44.79 2.77
3200 4134 0.390340 CTGCTAGCTGACGGCAAAGA 60.390 55.000 17.23 0.00 44.79 2.52
3201 4135 0.390340 TGCTAGCTGACGGCAAAGAG 60.390 55.000 17.23 1.33 44.79 2.85
3202 4136 1.700600 GCTAGCTGACGGCAAAGAGC 61.701 60.000 7.70 7.77 44.79 4.09
3203 4137 0.108424 CTAGCTGACGGCAAAGAGCT 60.108 55.000 9.39 7.94 44.05 4.09
3209 4143 2.359107 CGGCAAAGAGCTGGCAGA 60.359 61.111 20.86 0.00 46.20 4.26
3210 4144 1.748122 CGGCAAAGAGCTGGCAGAT 60.748 57.895 20.86 13.42 46.20 2.90
3211 4145 1.807886 GGCAAAGAGCTGGCAGATG 59.192 57.895 20.86 9.26 44.79 2.90
3212 4146 0.679002 GGCAAAGAGCTGGCAGATGA 60.679 55.000 20.86 0.00 44.79 2.92
3213 4147 0.450983 GCAAAGAGCTGGCAGATGAC 59.549 55.000 20.86 0.00 41.15 3.06
3214 4148 1.817357 CAAAGAGCTGGCAGATGACA 58.183 50.000 20.86 0.00 0.00 3.58
3215 4149 2.156917 CAAAGAGCTGGCAGATGACAA 58.843 47.619 20.86 0.00 29.15 3.18
3216 4150 2.555325 CAAAGAGCTGGCAGATGACAAA 59.445 45.455 20.86 0.00 29.15 2.83
3217 4151 2.110901 AGAGCTGGCAGATGACAAAG 57.889 50.000 20.86 0.00 29.15 2.77
3218 4152 1.350351 AGAGCTGGCAGATGACAAAGT 59.650 47.619 20.86 0.00 29.15 2.66
3219 4153 2.568956 AGAGCTGGCAGATGACAAAGTA 59.431 45.455 20.86 0.00 29.15 2.24
3220 4154 2.935201 GAGCTGGCAGATGACAAAGTAG 59.065 50.000 20.86 0.00 29.15 2.57
3221 4155 1.399791 GCTGGCAGATGACAAAGTAGC 59.600 52.381 20.86 0.00 29.15 3.58
3222 4156 2.938756 GCTGGCAGATGACAAAGTAGCT 60.939 50.000 20.86 0.00 29.15 3.32
3223 4157 2.676839 CTGGCAGATGACAAAGTAGCTG 59.323 50.000 9.42 0.00 29.15 4.24
3224 4158 2.302733 TGGCAGATGACAAAGTAGCTGA 59.697 45.455 0.00 0.00 0.00 4.26
3225 4159 3.054875 TGGCAGATGACAAAGTAGCTGAT 60.055 43.478 0.00 0.00 0.00 2.90
3226 4160 3.944015 GGCAGATGACAAAGTAGCTGATT 59.056 43.478 0.00 0.00 0.00 2.57
3227 4161 4.034975 GGCAGATGACAAAGTAGCTGATTC 59.965 45.833 0.00 0.00 0.00 2.52
3228 4162 4.034975 GCAGATGACAAAGTAGCTGATTCC 59.965 45.833 0.00 0.00 0.00 3.01
3229 4163 5.181009 CAGATGACAAAGTAGCTGATTCCA 58.819 41.667 0.00 0.00 0.00 3.53
3230 4164 5.293814 CAGATGACAAAGTAGCTGATTCCAG 59.706 44.000 0.00 0.00 43.22 3.86
3231 4165 4.623932 TGACAAAGTAGCTGATTCCAGT 57.376 40.909 0.00 0.00 42.35 4.00
3232 4166 5.738619 TGACAAAGTAGCTGATTCCAGTA 57.261 39.130 0.00 0.00 42.35 2.74
3233 4167 5.724328 TGACAAAGTAGCTGATTCCAGTAG 58.276 41.667 0.00 0.00 42.35 2.57
3234 4168 5.246203 TGACAAAGTAGCTGATTCCAGTAGT 59.754 40.000 0.00 0.00 42.35 2.73
3235 4169 5.482908 ACAAAGTAGCTGATTCCAGTAGTG 58.517 41.667 0.00 0.00 42.35 2.74
3236 4170 3.810310 AGTAGCTGATTCCAGTAGTGC 57.190 47.619 0.00 0.00 42.35 4.40
3237 4171 3.099905 AGTAGCTGATTCCAGTAGTGCA 58.900 45.455 0.00 0.00 42.35 4.57
3238 4172 3.708631 AGTAGCTGATTCCAGTAGTGCAT 59.291 43.478 0.00 0.00 42.35 3.96
3239 4173 2.915349 AGCTGATTCCAGTAGTGCATG 58.085 47.619 0.00 0.00 42.35 4.06
3240 4174 2.238144 AGCTGATTCCAGTAGTGCATGT 59.762 45.455 0.00 0.00 42.35 3.21
3241 4175 2.353889 GCTGATTCCAGTAGTGCATGTG 59.646 50.000 0.00 0.00 42.35 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 8 3.054065 AGGAGGCAGAGAAACCCTAATTG 60.054 47.826 0.00 0.00 0.00 2.32
108 111 3.689161 CACATCTAAAAACGCATCCCTCA 59.311 43.478 0.00 0.00 0.00 3.86
116 119 3.424433 CCCGAAGACACATCTAAAAACGC 60.424 47.826 0.00 0.00 33.57 4.84
918 1799 0.451783 AAGGCAAATTGATCGACCGC 59.548 50.000 0.00 0.00 0.00 5.68
937 1818 4.465305 GGGCAAACTGGAGTAGTACTTCTA 59.535 45.833 10.04 0.00 39.18 2.10
977 1858 1.653151 GGCGCTCGAGTATTCCTTTT 58.347 50.000 15.13 0.00 0.00 2.27
1150 2031 1.003233 GGCGCAGGAAGGAGTTCTT 60.003 57.895 10.83 0.00 38.65 2.52
1686 2589 3.195698 GCCGTTCGCTGTGGGATC 61.196 66.667 0.00 0.00 0.00 3.36
1787 2690 3.088789 ACGACTCATCCTCTAACCTGT 57.911 47.619 0.00 0.00 0.00 4.00
1938 2853 5.017490 TCGGAACCATAATCTAGATCTCCC 58.983 45.833 5.51 0.75 0.00 4.30
2005 2920 6.005823 TCACTGGCATATAAGATCCAAATGG 58.994 40.000 0.00 0.00 0.00 3.16
2084 2999 5.391312 AAATTTTGGACTTTGGAGATCCG 57.609 39.130 0.00 0.00 39.43 4.18
2384 3308 8.576442 ACCCACTGAAGTCAAATTGTAAATTAG 58.424 33.333 0.00 0.00 0.00 1.73
2385 3309 8.356657 CACCCACTGAAGTCAAATTGTAAATTA 58.643 33.333 0.00 0.00 0.00 1.40
2400 3324 3.068590 ACAAAATCAAGCACCCACTGAAG 59.931 43.478 0.00 0.00 0.00 3.02
2401 3325 3.030291 ACAAAATCAAGCACCCACTGAA 58.970 40.909 0.00 0.00 0.00 3.02
2406 3330 3.902881 ACAAACAAAATCAAGCACCCA 57.097 38.095 0.00 0.00 0.00 4.51
2407 3331 4.394610 ACAAACAAACAAAATCAAGCACCC 59.605 37.500 0.00 0.00 0.00 4.61
2419 3343 6.016777 AGGCAAATGAACAAACAAACAAACAA 60.017 30.769 0.00 0.00 0.00 2.83
2420 3344 5.471456 AGGCAAATGAACAAACAAACAAACA 59.529 32.000 0.00 0.00 0.00 2.83
2421 3345 5.937187 AGGCAAATGAACAAACAAACAAAC 58.063 33.333 0.00 0.00 0.00 2.93
2430 3354 4.442753 GGGACAAAGAGGCAAATGAACAAA 60.443 41.667 0.00 0.00 0.00 2.83
2433 3357 2.627699 TGGGACAAAGAGGCAAATGAAC 59.372 45.455 0.00 0.00 31.92 3.18
2458 3382 4.009675 GCCATCATACCAAGTCAAGTTCA 58.990 43.478 0.00 0.00 0.00 3.18
2493 3417 2.345617 TCGGCCGACATGCTGAAA 59.654 55.556 27.28 0.00 43.45 2.69
2508 3432 2.537560 GGATCCAATGGCGCAGTCG 61.538 63.158 10.83 0.00 39.07 4.18
2527 3451 1.722011 GAGTATGACACCCCACGTTG 58.278 55.000 0.00 0.00 0.00 4.10
2529 3453 1.601419 CCGAGTATGACACCCCACGT 61.601 60.000 0.00 0.00 0.00 4.49
2547 3471 4.123497 AGAAACAAAACTCTTGCCAACC 57.877 40.909 0.00 0.00 0.00 3.77
2548 3472 5.671082 GCAAAGAAACAAAACTCTTGCCAAC 60.671 40.000 0.00 0.00 32.23 3.77
2550 3474 3.932089 GCAAAGAAACAAAACTCTTGCCA 59.068 39.130 0.00 0.00 32.23 4.92
2552 3476 3.309682 GGGCAAAGAAACAAAACTCTTGC 59.690 43.478 0.00 0.00 32.23 4.01
2553 3477 4.502962 TGGGCAAAGAAACAAAACTCTTG 58.497 39.130 0.00 0.00 32.23 3.02
2590 3515 8.800332 AGAGAAGTGTGCATCTTTCATTAATTT 58.200 29.630 8.18 0.00 0.00 1.82
2643 3568 8.826710 ACACGTTTCATTTGATAACGATGATAT 58.173 29.630 22.55 7.36 45.36 1.63
2651 3576 6.020281 TGTTTGCACACGTTTCATTTGATAAC 60.020 34.615 0.00 0.00 0.00 1.89
2727 3652 7.755822 GTCGACCATGATGTCCTTAGTAATATC 59.244 40.741 3.51 0.00 31.35 1.63
2728 3653 7.232737 TGTCGACCATGATGTCCTTAGTAATAT 59.767 37.037 14.12 0.00 31.35 1.28
2729 3654 6.548251 TGTCGACCATGATGTCCTTAGTAATA 59.452 38.462 14.12 0.00 31.35 0.98
2730 3655 5.362717 TGTCGACCATGATGTCCTTAGTAAT 59.637 40.000 14.12 0.00 31.35 1.89
2731 3656 4.707934 TGTCGACCATGATGTCCTTAGTAA 59.292 41.667 14.12 0.00 31.35 2.24
2732 3657 4.274978 TGTCGACCATGATGTCCTTAGTA 58.725 43.478 14.12 0.00 31.35 1.82
2733 3658 3.096852 TGTCGACCATGATGTCCTTAGT 58.903 45.455 14.12 0.00 31.35 2.24
2734 3659 3.801114 TGTCGACCATGATGTCCTTAG 57.199 47.619 14.12 0.00 31.35 2.18
2735 3660 4.161377 TCAATGTCGACCATGATGTCCTTA 59.839 41.667 14.12 0.00 32.82 2.69
2756 3690 8.253810 TGGTTAAATGTGTTTGTTGAAGATTCA 58.746 29.630 0.00 0.00 34.92 2.57
2781 3715 7.637229 CAAAATAGCTGATTCCTGTAGTGATG 58.363 38.462 0.00 0.00 0.00 3.07
2784 3718 5.220931 GGCAAAATAGCTGATTCCTGTAGTG 60.221 44.000 0.00 0.00 34.17 2.74
2785 3719 4.884164 GGCAAAATAGCTGATTCCTGTAGT 59.116 41.667 0.00 0.00 34.17 2.73
2786 3720 4.024556 CGGCAAAATAGCTGATTCCTGTAG 60.025 45.833 0.00 0.00 43.63 2.74
2787 3721 3.876914 CGGCAAAATAGCTGATTCCTGTA 59.123 43.478 0.00 0.00 43.63 2.74
2788 3722 2.684881 CGGCAAAATAGCTGATTCCTGT 59.315 45.455 0.00 0.00 43.63 4.00
2789 3723 2.684881 ACGGCAAAATAGCTGATTCCTG 59.315 45.455 0.00 0.00 43.63 3.86
2790 3724 2.945668 GACGGCAAAATAGCTGATTCCT 59.054 45.455 0.00 0.00 43.63 3.36
2791 3725 2.945668 AGACGGCAAAATAGCTGATTCC 59.054 45.455 0.00 0.00 43.63 3.01
2792 3726 3.790123 GCAGACGGCAAAATAGCTGATTC 60.790 47.826 0.00 0.00 43.63 2.52
2793 3727 2.098117 GCAGACGGCAAAATAGCTGATT 59.902 45.455 0.00 0.00 43.63 2.57
2794 3728 1.672881 GCAGACGGCAAAATAGCTGAT 59.327 47.619 0.00 0.00 43.63 2.90
2795 3729 1.086696 GCAGACGGCAAAATAGCTGA 58.913 50.000 0.00 0.00 43.63 4.26
2796 3730 2.549019 TGGCAGACGGCAAAATAGCTG 61.549 52.381 0.00 0.00 46.20 4.24
2797 3731 0.322456 TGGCAGACGGCAAAATAGCT 60.322 50.000 0.00 0.00 46.20 3.32
2798 3732 2.179764 TGGCAGACGGCAAAATAGC 58.820 52.632 0.00 0.00 46.20 2.97
2819 3753 4.481112 CATGCCTTTGCCGTCCGC 62.481 66.667 0.00 0.00 36.33 5.54
2820 3754 2.331893 TTCATGCCTTTGCCGTCCG 61.332 57.895 0.00 0.00 36.33 4.79
2821 3755 1.212751 GTTCATGCCTTTGCCGTCC 59.787 57.895 0.00 0.00 36.33 4.79
2822 3756 1.154225 CGTTCATGCCTTTGCCGTC 60.154 57.895 0.00 0.00 36.33 4.79
2823 3757 2.625823 CCGTTCATGCCTTTGCCGT 61.626 57.895 0.00 0.00 36.33 5.68
2824 3758 2.179018 CCGTTCATGCCTTTGCCG 59.821 61.111 0.00 0.00 36.33 5.69
2825 3759 2.125952 GCCGTTCATGCCTTTGCC 60.126 61.111 0.00 0.00 36.33 4.52
2826 3760 2.504681 CGCCGTTCATGCCTTTGC 60.505 61.111 0.00 0.00 38.26 3.68
2827 3761 2.179018 CCGCCGTTCATGCCTTTG 59.821 61.111 0.00 0.00 0.00 2.77
2828 3762 2.033448 TCCGCCGTTCATGCCTTT 59.967 55.556 0.00 0.00 0.00 3.11
2829 3763 2.746277 GTCCGCCGTTCATGCCTT 60.746 61.111 0.00 0.00 0.00 4.35
2834 3768 4.690719 TTGCCGTCCGCCGTTCAT 62.691 61.111 0.00 0.00 36.24 2.57
2835 3769 4.912485 TTTGCCGTCCGCCGTTCA 62.912 61.111 0.00 0.00 36.24 3.18
2836 3770 4.084888 CTTTGCCGTCCGCCGTTC 62.085 66.667 0.00 0.00 36.24 3.95
2883 3817 4.476410 GCGGCTAACGGCAAAGGC 62.476 66.667 0.00 0.00 44.51 4.35
2884 3818 4.160635 CGCGGCTAACGGCAAAGG 62.161 66.667 0.00 0.00 44.51 3.11
2885 3819 4.160635 CCGCGGCTAACGGCAAAG 62.161 66.667 14.67 0.00 44.90 2.77
2899 3833 4.103103 GAGCCTTTTGCCGTCCGC 62.103 66.667 0.00 0.00 42.71 5.54
2900 3834 3.431725 GGAGCCTTTTGCCGTCCG 61.432 66.667 0.00 0.00 42.71 4.79
2901 3835 3.431725 CGGAGCCTTTTGCCGTCC 61.432 66.667 0.00 0.00 42.71 4.79
2902 3836 3.431725 CCGGAGCCTTTTGCCGTC 61.432 66.667 0.00 0.00 43.35 4.79
2906 3840 3.328288 CTTCGCCGGAGCCTTTTGC 62.328 63.158 5.05 0.00 41.71 3.68
2907 3841 0.672401 TACTTCGCCGGAGCCTTTTG 60.672 55.000 5.05 0.00 34.57 2.44
2908 3842 0.391263 CTACTTCGCCGGAGCCTTTT 60.391 55.000 5.05 0.00 34.57 2.27
2909 3843 1.218316 CTACTTCGCCGGAGCCTTT 59.782 57.895 5.05 0.00 34.57 3.11
2910 3844 2.722201 CCTACTTCGCCGGAGCCTT 61.722 63.158 5.05 0.00 34.57 4.35
2911 3845 3.148279 CCTACTTCGCCGGAGCCT 61.148 66.667 5.05 0.00 34.57 4.58
2912 3846 4.893601 GCCTACTTCGCCGGAGCC 62.894 72.222 5.05 0.00 34.57 4.70
2913 3847 2.487532 TAGCCTACTTCGCCGGAGC 61.488 63.158 5.05 0.00 0.00 4.70
2914 3848 1.359475 GTAGCCTACTTCGCCGGAG 59.641 63.158 5.05 0.00 0.00 4.63
2915 3849 2.475466 CGTAGCCTACTTCGCCGGA 61.475 63.158 5.05 0.00 29.74 5.14
2916 3850 2.025727 CGTAGCCTACTTCGCCGG 59.974 66.667 0.00 0.00 29.74 6.13
2917 3851 1.439353 TACCGTAGCCTACTTCGCCG 61.439 60.000 0.00 0.00 35.57 6.46
2918 3852 0.740737 TTACCGTAGCCTACTTCGCC 59.259 55.000 0.00 0.00 35.57 5.54
2919 3853 2.188524 GTTTACCGTAGCCTACTTCGC 58.811 52.381 0.00 0.00 35.57 4.70
2920 3854 3.432782 CTGTTTACCGTAGCCTACTTCG 58.567 50.000 0.00 0.00 36.55 3.79
2921 3855 3.119209 AGCTGTTTACCGTAGCCTACTTC 60.119 47.826 0.00 0.00 38.18 3.01
2922 3856 2.830321 AGCTGTTTACCGTAGCCTACTT 59.170 45.455 0.00 0.00 38.18 2.24
2923 3857 2.454538 AGCTGTTTACCGTAGCCTACT 58.545 47.619 0.00 0.00 38.18 2.57
2924 3858 2.955477 AGCTGTTTACCGTAGCCTAC 57.045 50.000 0.00 0.00 38.18 3.18
2925 3859 3.624777 AGTAGCTGTTTACCGTAGCCTA 58.375 45.455 0.00 0.00 38.18 3.93
2926 3860 2.454538 AGTAGCTGTTTACCGTAGCCT 58.545 47.619 0.00 0.00 38.18 4.58
2927 3861 2.955477 AGTAGCTGTTTACCGTAGCC 57.045 50.000 0.00 0.00 38.18 3.93
2928 3862 3.992427 ACAAAGTAGCTGTTTACCGTAGC 59.008 43.478 0.00 0.00 37.71 3.58
2929 3863 4.322804 CGACAAAGTAGCTGTTTACCGTAG 59.677 45.833 0.00 0.00 0.00 3.51
2930 3864 4.229096 CGACAAAGTAGCTGTTTACCGTA 58.771 43.478 0.00 0.00 0.00 4.02
2931 3865 3.054878 CGACAAAGTAGCTGTTTACCGT 58.945 45.455 0.00 0.00 0.00 4.83
2932 3866 3.054878 ACGACAAAGTAGCTGTTTACCG 58.945 45.455 0.00 5.88 0.00 4.02
2933 3867 4.150098 CAGACGACAAAGTAGCTGTTTACC 59.850 45.833 0.00 0.00 0.00 2.85
2934 3868 4.376109 GCAGACGACAAAGTAGCTGTTTAC 60.376 45.833 0.00 0.00 0.00 2.01
2935 3869 3.739300 GCAGACGACAAAGTAGCTGTTTA 59.261 43.478 0.00 0.00 0.00 2.01
2936 3870 2.544267 GCAGACGACAAAGTAGCTGTTT 59.456 45.455 0.00 0.00 0.00 2.83
2937 3871 2.135933 GCAGACGACAAAGTAGCTGTT 58.864 47.619 0.00 0.00 0.00 3.16
2938 3872 1.341531 AGCAGACGACAAAGTAGCTGT 59.658 47.619 0.00 0.00 35.29 4.40
2939 3873 2.071688 AGCAGACGACAAAGTAGCTG 57.928 50.000 0.00 0.00 35.29 4.24
2940 3874 2.610727 GGAAGCAGACGACAAAGTAGCT 60.611 50.000 0.00 0.00 37.23 3.32
2941 3875 1.727335 GGAAGCAGACGACAAAGTAGC 59.273 52.381 0.00 0.00 0.00 3.58
2942 3876 1.986378 CGGAAGCAGACGACAAAGTAG 59.014 52.381 0.00 0.00 0.00 2.57
2943 3877 1.336517 CCGGAAGCAGACGACAAAGTA 60.337 52.381 0.00 0.00 0.00 2.24
2944 3878 0.600255 CCGGAAGCAGACGACAAAGT 60.600 55.000 0.00 0.00 0.00 2.66
2945 3879 1.291877 CCCGGAAGCAGACGACAAAG 61.292 60.000 0.73 0.00 0.00 2.77
2946 3880 1.301401 CCCGGAAGCAGACGACAAA 60.301 57.895 0.73 0.00 0.00 2.83
2947 3881 2.342279 CCCGGAAGCAGACGACAA 59.658 61.111 0.73 0.00 0.00 3.18
2948 3882 4.373116 GCCCGGAAGCAGACGACA 62.373 66.667 0.73 0.00 0.00 4.35
2996 3930 3.257561 CTCTCATTGCCGTCCGCG 61.258 66.667 0.00 0.00 42.08 6.46
2997 3931 3.567797 GCTCTCATTGCCGTCCGC 61.568 66.667 0.00 0.00 38.31 5.54
2998 3932 3.257561 CGCTCTCATTGCCGTCCG 61.258 66.667 0.00 0.00 0.00 4.79
2999 3933 2.892425 CCGCTCTCATTGCCGTCC 60.892 66.667 0.00 0.00 0.00 4.79
3000 3934 2.167861 GTCCGCTCTCATTGCCGTC 61.168 63.158 0.00 0.00 0.00 4.79
3001 3935 2.125512 GTCCGCTCTCATTGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
3002 3936 2.125552 TGTCCGCTCTCATTGCCG 60.126 61.111 0.00 0.00 0.00 5.69
3003 3937 2.467826 GCTGTCCGCTCTCATTGCC 61.468 63.158 0.00 0.00 35.14 4.52
3004 3938 1.300971 TTGCTGTCCGCTCTCATTGC 61.301 55.000 0.00 0.00 40.11 3.56
3005 3939 1.376543 ATTGCTGTCCGCTCTCATTG 58.623 50.000 0.00 0.00 40.11 2.82
3006 3940 2.988010 TATTGCTGTCCGCTCTCATT 57.012 45.000 0.00 0.00 40.11 2.57
3007 3941 2.988010 TTATTGCTGTCCGCTCTCAT 57.012 45.000 0.00 0.00 40.11 2.90
3008 3942 2.938451 CAATTATTGCTGTCCGCTCTCA 59.062 45.455 0.00 0.00 40.11 3.27
3009 3943 3.599046 CAATTATTGCTGTCCGCTCTC 57.401 47.619 0.00 0.00 40.11 3.20
3021 3955 2.537529 CGGACTGACAGCGCAATTATTG 60.538 50.000 11.47 0.00 0.00 1.90
3022 3956 1.665679 CGGACTGACAGCGCAATTATT 59.334 47.619 11.47 0.00 0.00 1.40
3023 3957 1.290203 CGGACTGACAGCGCAATTAT 58.710 50.000 11.47 0.00 0.00 1.28
3024 3958 0.037697 ACGGACTGACAGCGCAATTA 60.038 50.000 11.47 0.00 0.00 1.40
3025 3959 0.884704 AACGGACTGACAGCGCAATT 60.885 50.000 11.47 0.00 0.00 2.32
3026 3960 0.037697 TAACGGACTGACAGCGCAAT 60.038 50.000 11.47 0.00 0.00 3.56
3027 3961 0.249531 TTAACGGACTGACAGCGCAA 60.250 50.000 11.47 0.00 0.00 4.85
3028 3962 0.666274 CTTAACGGACTGACAGCGCA 60.666 55.000 11.47 0.00 0.00 6.09
3029 3963 0.666577 ACTTAACGGACTGACAGCGC 60.667 55.000 0.00 0.00 0.00 5.92
3030 3964 1.060713 CACTTAACGGACTGACAGCG 58.939 55.000 1.25 1.39 0.00 5.18
3031 3965 1.429463 CCACTTAACGGACTGACAGC 58.571 55.000 1.25 0.00 0.00 4.40
3032 3966 1.000955 AGCCACTTAACGGACTGACAG 59.999 52.381 0.00 0.00 0.00 3.51
3033 3967 1.045407 AGCCACTTAACGGACTGACA 58.955 50.000 0.00 0.00 0.00 3.58
3034 3968 2.991866 GTTAGCCACTTAACGGACTGAC 59.008 50.000 0.00 0.00 0.00 3.51
3035 3969 3.308438 GTTAGCCACTTAACGGACTGA 57.692 47.619 0.00 0.00 0.00 3.41
3042 3976 1.084289 CCTGCCGTTAGCCACTTAAC 58.916 55.000 0.00 0.00 42.71 2.01
3043 3977 0.675522 GCCTGCCGTTAGCCACTTAA 60.676 55.000 0.00 0.00 42.71 1.85
3044 3978 1.078708 GCCTGCCGTTAGCCACTTA 60.079 57.895 0.00 0.00 42.71 2.24
3045 3979 2.359975 GCCTGCCGTTAGCCACTT 60.360 61.111 0.00 0.00 42.71 3.16
3046 3980 4.410400 GGCCTGCCGTTAGCCACT 62.410 66.667 0.00 0.00 46.34 4.00
3050 3984 2.877691 CAAAGGCCTGCCGTTAGC 59.122 61.111 5.69 0.00 41.95 3.09
3051 3985 2.877691 GCAAAGGCCTGCCGTTAG 59.122 61.111 5.69 5.68 41.95 2.34
3069 4003 3.620300 TTACTGTCTGCCGCGGACG 62.620 63.158 33.48 19.05 42.18 4.79
3070 4004 1.373748 TTTACTGTCTGCCGCGGAC 60.374 57.895 33.48 23.20 39.93 4.79
3071 4005 1.373748 GTTTACTGTCTGCCGCGGA 60.374 57.895 33.48 13.59 0.00 5.54
3072 4006 0.949105 AAGTTTACTGTCTGCCGCGG 60.949 55.000 24.05 24.05 0.00 6.46
3073 4007 0.865769 AAAGTTTACTGTCTGCCGCG 59.134 50.000 0.00 0.00 0.00 6.46
3074 4008 2.143925 AGAAAGTTTACTGTCTGCCGC 58.856 47.619 1.76 0.00 39.05 6.53
3075 4009 4.386049 CACTAGAAAGTTTACTGTCTGCCG 59.614 45.833 11.96 4.30 40.62 5.69
3076 4010 5.298347 ACACTAGAAAGTTTACTGTCTGCC 58.702 41.667 11.96 0.00 40.62 4.85
3077 4011 6.217294 AGACACTAGAAAGTTTACTGTCTGC 58.783 40.000 11.96 0.00 40.62 4.26
3078 4012 8.543774 CAAAGACACTAGAAAGTTTACTGTCTG 58.456 37.037 11.96 5.70 40.62 3.51
3079 4013 7.224949 GCAAAGACACTAGAAAGTTTACTGTCT 59.775 37.037 7.67 7.67 42.87 3.41
3080 4014 7.345943 GCAAAGACACTAGAAAGTTTACTGTC 58.654 38.462 0.00 0.00 31.97 3.51
3081 4015 6.260271 GGCAAAGACACTAGAAAGTTTACTGT 59.740 38.462 0.00 0.00 31.97 3.55
3082 4016 6.564125 CGGCAAAGACACTAGAAAGTTTACTG 60.564 42.308 0.00 0.00 31.97 2.74
3083 4017 5.465724 CGGCAAAGACACTAGAAAGTTTACT 59.534 40.000 0.00 0.00 31.97 2.24
3084 4018 5.235831 ACGGCAAAGACACTAGAAAGTTTAC 59.764 40.000 0.00 0.00 31.97 2.01
3085 4019 5.362263 ACGGCAAAGACACTAGAAAGTTTA 58.638 37.500 0.00 0.00 31.97 2.01
3086 4020 4.196971 ACGGCAAAGACACTAGAAAGTTT 58.803 39.130 0.00 0.00 31.97 2.66
3087 4021 3.805207 ACGGCAAAGACACTAGAAAGTT 58.195 40.909 0.00 0.00 31.97 2.66
3088 4022 3.069729 AGACGGCAAAGACACTAGAAAGT 59.930 43.478 0.00 0.00 35.91 2.66
3089 4023 3.430218 CAGACGGCAAAGACACTAGAAAG 59.570 47.826 0.00 0.00 0.00 2.62
3090 4024 3.390135 CAGACGGCAAAGACACTAGAAA 58.610 45.455 0.00 0.00 0.00 2.52
3091 4025 2.866460 GCAGACGGCAAAGACACTAGAA 60.866 50.000 0.00 0.00 43.97 2.10
3092 4026 1.336887 GCAGACGGCAAAGACACTAGA 60.337 52.381 0.00 0.00 43.97 2.43
3093 4027 1.071605 GCAGACGGCAAAGACACTAG 58.928 55.000 0.00 0.00 43.97 2.57
3094 4028 3.210857 GCAGACGGCAAAGACACTA 57.789 52.632 0.00 0.00 43.97 2.74
3095 4029 4.049393 GCAGACGGCAAAGACACT 57.951 55.556 0.00 0.00 43.97 3.55
3104 4038 1.221414 GACATCATAAGGCAGACGGC 58.779 55.000 0.00 0.00 43.74 5.68
3105 4039 2.477825 CTGACATCATAAGGCAGACGG 58.522 52.381 0.00 0.00 0.00 4.79
3106 4040 1.863454 GCTGACATCATAAGGCAGACG 59.137 52.381 0.00 0.00 0.00 4.18
3107 4041 2.216898 GGCTGACATCATAAGGCAGAC 58.783 52.381 0.00 0.00 36.56 3.51
3108 4042 1.839354 TGGCTGACATCATAAGGCAGA 59.161 47.619 0.00 0.00 41.08 4.26
3109 4043 2.336945 TGGCTGACATCATAAGGCAG 57.663 50.000 0.00 0.00 41.08 4.85
3110 4044 1.561076 ACTGGCTGACATCATAAGGCA 59.439 47.619 0.00 0.00 43.41 4.75
3111 4045 2.338577 ACTGGCTGACATCATAAGGC 57.661 50.000 0.00 0.00 37.04 4.35
3112 4046 4.148128 AGAACTGGCTGACATCATAAGG 57.852 45.455 0.00 0.00 0.00 2.69
3113 4047 5.675575 GCAAAGAACTGGCTGACATCATAAG 60.676 44.000 0.00 0.00 0.00 1.73
3114 4048 4.156556 GCAAAGAACTGGCTGACATCATAA 59.843 41.667 0.00 0.00 0.00 1.90
3115 4049 3.691118 GCAAAGAACTGGCTGACATCATA 59.309 43.478 0.00 0.00 0.00 2.15
3116 4050 2.490903 GCAAAGAACTGGCTGACATCAT 59.509 45.455 0.00 0.00 0.00 2.45
3117 4051 1.881973 GCAAAGAACTGGCTGACATCA 59.118 47.619 0.00 0.00 0.00 3.07
3118 4052 1.200948 GGCAAAGAACTGGCTGACATC 59.799 52.381 0.00 0.00 38.77 3.06
3119 4053 1.251251 GGCAAAGAACTGGCTGACAT 58.749 50.000 0.00 0.00 38.77 3.06
3120 4054 1.165907 CGGCAAAGAACTGGCTGACA 61.166 55.000 0.00 0.00 39.65 3.58
3121 4055 1.166531 ACGGCAAAGAACTGGCTGAC 61.167 55.000 12.30 0.00 39.65 3.51
3122 4056 0.884704 GACGGCAAAGAACTGGCTGA 60.885 55.000 12.30 0.00 39.65 4.26
3123 4057 1.165907 TGACGGCAAAGAACTGGCTG 61.166 55.000 0.00 0.00 39.65 4.85
3124 4058 0.886490 CTGACGGCAAAGAACTGGCT 60.886 55.000 0.00 0.00 39.65 4.75
3125 4059 1.576421 CTGACGGCAAAGAACTGGC 59.424 57.895 0.00 0.00 38.47 4.85
3126 4060 0.886490 AGCTGACGGCAAAGAACTGG 60.886 55.000 9.39 0.00 44.79 4.00
3127 4061 0.947244 AAGCTGACGGCAAAGAACTG 59.053 50.000 9.39 0.00 44.79 3.16
3128 4062 1.680338 AAAGCTGACGGCAAAGAACT 58.320 45.000 9.39 0.00 44.79 3.01
3129 4063 2.119457 CAAAAGCTGACGGCAAAGAAC 58.881 47.619 9.39 0.00 44.79 3.01
3130 4064 1.066908 CCAAAAGCTGACGGCAAAGAA 59.933 47.619 9.39 0.00 44.79 2.52
3131 4065 0.667993 CCAAAAGCTGACGGCAAAGA 59.332 50.000 9.39 0.00 44.79 2.52
3132 4066 0.318955 CCCAAAAGCTGACGGCAAAG 60.319 55.000 9.39 0.00 44.79 2.77
3133 4067 1.040339 ACCCAAAAGCTGACGGCAAA 61.040 50.000 9.39 0.00 44.79 3.68
3134 4068 0.179015 TACCCAAAAGCTGACGGCAA 60.179 50.000 9.39 0.00 44.79 4.52
3135 4069 0.605319 CTACCCAAAAGCTGACGGCA 60.605 55.000 9.39 0.00 44.79 5.69
3136 4070 1.923227 GCTACCCAAAAGCTGACGGC 61.923 60.000 0.00 0.00 42.19 5.68
3137 4071 2.171635 GCTACCCAAAAGCTGACGG 58.828 57.895 0.00 0.00 37.01 4.79
3143 4077 0.457443 GCCATCAGCTACCCAAAAGC 59.543 55.000 0.00 0.00 40.40 3.51
3144 4078 1.838112 TGCCATCAGCTACCCAAAAG 58.162 50.000 0.00 0.00 44.23 2.27
3145 4079 2.300956 TTGCCATCAGCTACCCAAAA 57.699 45.000 0.00 0.00 44.23 2.44
3146 4080 2.170166 CTTTGCCATCAGCTACCCAAA 58.830 47.619 0.00 0.00 44.23 3.28
3147 4081 1.354031 TCTTTGCCATCAGCTACCCAA 59.646 47.619 0.00 0.00 44.23 4.12
3148 4082 0.991146 TCTTTGCCATCAGCTACCCA 59.009 50.000 0.00 0.00 44.23 4.51
3149 4083 1.673168 CTCTTTGCCATCAGCTACCC 58.327 55.000 0.00 0.00 44.23 3.69
3150 4084 1.020437 GCTCTTTGCCATCAGCTACC 58.980 55.000 0.00 0.00 44.23 3.18
3151 4085 2.035530 AGCTCTTTGCCATCAGCTAC 57.964 50.000 0.00 0.00 40.52 3.58
3152 4086 2.238144 AGAAGCTCTTTGCCATCAGCTA 59.762 45.455 0.00 0.00 41.48 3.32
3153 4087 1.004511 AGAAGCTCTTTGCCATCAGCT 59.995 47.619 0.00 0.00 44.28 4.24
3154 4088 1.461559 AGAAGCTCTTTGCCATCAGC 58.538 50.000 0.00 0.00 44.23 4.26
3163 4097 1.876156 CAGACGGCAAAGAAGCTCTTT 59.124 47.619 0.00 5.61 46.75 2.52
3164 4098 1.517242 CAGACGGCAAAGAAGCTCTT 58.483 50.000 0.00 0.00 38.59 2.85
3165 4099 0.952984 GCAGACGGCAAAGAAGCTCT 60.953 55.000 0.00 0.00 43.97 4.09
3166 4100 1.499502 GCAGACGGCAAAGAAGCTC 59.500 57.895 0.00 0.00 43.97 4.09
3167 4101 3.660621 GCAGACGGCAAAGAAGCT 58.339 55.556 0.00 0.00 43.97 3.74
3174 4108 2.819117 CGTCAGCTAGCAGACGGCAA 62.819 60.000 39.52 7.24 46.97 4.52
3175 4109 3.342370 CGTCAGCTAGCAGACGGCA 62.342 63.158 39.52 7.94 46.97 5.69
3176 4110 2.580867 CGTCAGCTAGCAGACGGC 60.581 66.667 39.52 18.28 46.97 5.68
3179 4113 0.670546 TTTGCCGTCAGCTAGCAGAC 60.671 55.000 25.73 25.73 44.23 3.51
3180 4114 0.390340 CTTTGCCGTCAGCTAGCAGA 60.390 55.000 18.83 12.26 44.23 4.26
3181 4115 0.390340 TCTTTGCCGTCAGCTAGCAG 60.390 55.000 18.83 9.54 44.23 4.24
3182 4116 0.390340 CTCTTTGCCGTCAGCTAGCA 60.390 55.000 18.83 0.00 44.23 3.49
3183 4117 1.700600 GCTCTTTGCCGTCAGCTAGC 61.701 60.000 6.62 6.62 44.23 3.42
3184 4118 0.108424 AGCTCTTTGCCGTCAGCTAG 60.108 55.000 0.00 0.00 40.52 3.42
3185 4119 0.390340 CAGCTCTTTGCCGTCAGCTA 60.390 55.000 0.00 0.00 40.33 3.32
3186 4120 1.670406 CAGCTCTTTGCCGTCAGCT 60.670 57.895 0.00 0.00 43.16 4.24
3187 4121 2.684843 CCAGCTCTTTGCCGTCAGC 61.685 63.158 0.00 0.00 44.23 4.26
3188 4122 2.684843 GCCAGCTCTTTGCCGTCAG 61.685 63.158 0.00 0.00 44.23 3.51
3189 4123 2.669569 GCCAGCTCTTTGCCGTCA 60.670 61.111 0.00 0.00 44.23 4.35
3190 4124 2.669569 TGCCAGCTCTTTGCCGTC 60.670 61.111 0.00 0.00 44.23 4.79
3191 4125 2.475371 ATCTGCCAGCTCTTTGCCGT 62.475 55.000 0.00 0.00 44.23 5.68
3192 4126 1.748122 ATCTGCCAGCTCTTTGCCG 60.748 57.895 0.00 0.00 44.23 5.69
3193 4127 0.679002 TCATCTGCCAGCTCTTTGCC 60.679 55.000 0.00 0.00 44.23 4.52
3194 4128 0.450983 GTCATCTGCCAGCTCTTTGC 59.549 55.000 0.00 0.00 43.29 3.68
3195 4129 1.817357 TGTCATCTGCCAGCTCTTTG 58.183 50.000 0.00 0.00 0.00 2.77
3196 4130 2.574006 TTGTCATCTGCCAGCTCTTT 57.426 45.000 0.00 0.00 0.00 2.52
3197 4131 2.224719 ACTTTGTCATCTGCCAGCTCTT 60.225 45.455 0.00 0.00 0.00 2.85
3198 4132 1.350351 ACTTTGTCATCTGCCAGCTCT 59.650 47.619 0.00 0.00 0.00 4.09
3199 4133 1.818642 ACTTTGTCATCTGCCAGCTC 58.181 50.000 0.00 0.00 0.00 4.09
3200 4134 2.938756 GCTACTTTGTCATCTGCCAGCT 60.939 50.000 0.00 0.00 0.00 4.24
3201 4135 1.399791 GCTACTTTGTCATCTGCCAGC 59.600 52.381 0.00 0.00 0.00 4.85
3202 4136 2.676839 CAGCTACTTTGTCATCTGCCAG 59.323 50.000 0.00 0.00 0.00 4.85
3203 4137 2.302733 TCAGCTACTTTGTCATCTGCCA 59.697 45.455 0.00 0.00 0.00 4.92
3204 4138 2.977914 TCAGCTACTTTGTCATCTGCC 58.022 47.619 0.00 0.00 0.00 4.85
3205 4139 4.034975 GGAATCAGCTACTTTGTCATCTGC 59.965 45.833 0.00 0.00 0.00 4.26
3206 4140 5.181009 TGGAATCAGCTACTTTGTCATCTG 58.819 41.667 0.00 0.00 0.00 2.90
3207 4141 5.046014 ACTGGAATCAGCTACTTTGTCATCT 60.046 40.000 0.00 0.00 44.59 2.90
3208 4142 5.181748 ACTGGAATCAGCTACTTTGTCATC 58.818 41.667 0.00 0.00 44.59 2.92
3209 4143 5.171339 ACTGGAATCAGCTACTTTGTCAT 57.829 39.130 0.00 0.00 44.59 3.06
3210 4144 4.623932 ACTGGAATCAGCTACTTTGTCA 57.376 40.909 0.00 0.00 44.59 3.58
3211 4145 5.578727 CACTACTGGAATCAGCTACTTTGTC 59.421 44.000 0.00 0.00 44.59 3.18
3212 4146 5.482908 CACTACTGGAATCAGCTACTTTGT 58.517 41.667 0.00 0.00 44.59 2.83
3213 4147 4.331168 GCACTACTGGAATCAGCTACTTTG 59.669 45.833 0.00 0.00 44.59 2.77
3214 4148 4.020218 TGCACTACTGGAATCAGCTACTTT 60.020 41.667 0.00 0.00 44.59 2.66
3215 4149 3.515502 TGCACTACTGGAATCAGCTACTT 59.484 43.478 0.00 0.00 44.59 2.24
3216 4150 3.099905 TGCACTACTGGAATCAGCTACT 58.900 45.455 0.00 0.00 44.59 2.57
3217 4151 3.526931 TGCACTACTGGAATCAGCTAC 57.473 47.619 0.00 0.00 44.59 3.58
3218 4152 3.452264 ACATGCACTACTGGAATCAGCTA 59.548 43.478 0.00 0.00 44.59 3.32
3219 4153 2.238144 ACATGCACTACTGGAATCAGCT 59.762 45.455 0.00 0.00 44.59 4.24
3220 4154 2.353889 CACATGCACTACTGGAATCAGC 59.646 50.000 0.00 0.00 44.59 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.