Multiple sequence alignment - TraesCS2D01G439700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G439700 chr2D 100.000 2348 0 0 1 2348 548976200 548978547 0.000000e+00 4337.0
1 TraesCS2D01G439700 chr2D 98.067 569 10 1 1781 2348 548991255 548991823 0.000000e+00 989.0
2 TraesCS2D01G439700 chr2D 91.111 45 4 0 522 566 569184651 569184695 7.010000e-06 62.1
3 TraesCS2D01G439700 chr2A 89.572 1285 119 9 84 1358 764771595 764770316 0.000000e+00 1616.0
4 TraesCS2D01G439700 chr7A 84.644 1335 192 9 150 1474 693207238 693205907 0.000000e+00 1317.0
5 TraesCS2D01G439700 chr7A 89.637 193 18 2 1471 1663 112453353 112453543 6.480000e-61 244.0
6 TraesCS2D01G439700 chr1D 96.485 569 18 2 1781 2348 221034899 221035466 0.000000e+00 939.0
7 TraesCS2D01G439700 chr1D 96.309 569 16 4 1781 2348 221027485 221028049 0.000000e+00 929.0
8 TraesCS2D01G439700 chr2B 96.309 569 14 4 1781 2348 541165352 541165914 0.000000e+00 928.0
9 TraesCS2D01G439700 chr2B 95.965 570 18 4 1781 2348 549876821 549877387 0.000000e+00 920.0
10 TraesCS2D01G439700 chr2B 89.947 189 18 1 1471 1659 152752173 152751986 2.330000e-60 243.0
11 TraesCS2D01G439700 chr4B 95.965 570 20 3 1781 2348 142946660 142946092 0.000000e+00 922.0
12 TraesCS2D01G439700 chr6B 95.965 570 17 4 1781 2348 289361243 289361808 0.000000e+00 920.0
13 TraesCS2D01G439700 chr3B 95.958 569 19 3 1781 2348 732004651 732004086 0.000000e+00 920.0
14 TraesCS2D01G439700 chr7B 95.789 570 18 5 1781 2348 158856190 158855625 0.000000e+00 915.0
15 TraesCS2D01G439700 chr7B 90.576 191 14 4 1471 1661 334460230 334460416 1.390000e-62 250.0
16 TraesCS2D01G439700 chr7D 74.324 888 199 22 318 1187 205949595 205950471 1.340000e-92 350.0
17 TraesCS2D01G439700 chr6D 93.085 188 10 3 1471 1658 9899561 9899377 2.970000e-69 272.0
18 TraesCS2D01G439700 chr6A 92.632 190 13 1 1471 1660 335743488 335743300 2.970000e-69 272.0
19 TraesCS2D01G439700 chr5D 91.005 189 16 1 1471 1659 377148042 377147855 1.080000e-63 254.0
20 TraesCS2D01G439700 chr4A 91.398 186 15 1 1472 1657 647135034 647135218 1.080000e-63 254.0
21 TraesCS2D01G439700 chr5B 91.005 189 14 3 1471 1659 61200006 61200191 3.870000e-63 252.0
22 TraesCS2D01G439700 chr4D 90.526 190 14 2 1471 1659 93350903 93350717 5.010000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G439700 chr2D 548976200 548978547 2347 False 4337 4337 100.000 1 2348 1 chr2D.!!$F1 2347
1 TraesCS2D01G439700 chr2D 548991255 548991823 568 False 989 989 98.067 1781 2348 1 chr2D.!!$F2 567
2 TraesCS2D01G439700 chr2A 764770316 764771595 1279 True 1616 1616 89.572 84 1358 1 chr2A.!!$R1 1274
3 TraesCS2D01G439700 chr7A 693205907 693207238 1331 True 1317 1317 84.644 150 1474 1 chr7A.!!$R1 1324
4 TraesCS2D01G439700 chr1D 221034899 221035466 567 False 939 939 96.485 1781 2348 1 chr1D.!!$F2 567
5 TraesCS2D01G439700 chr1D 221027485 221028049 564 False 929 929 96.309 1781 2348 1 chr1D.!!$F1 567
6 TraesCS2D01G439700 chr2B 541165352 541165914 562 False 928 928 96.309 1781 2348 1 chr2B.!!$F1 567
7 TraesCS2D01G439700 chr2B 549876821 549877387 566 False 920 920 95.965 1781 2348 1 chr2B.!!$F2 567
8 TraesCS2D01G439700 chr4B 142946092 142946660 568 True 922 922 95.965 1781 2348 1 chr4B.!!$R1 567
9 TraesCS2D01G439700 chr6B 289361243 289361808 565 False 920 920 95.965 1781 2348 1 chr6B.!!$F1 567
10 TraesCS2D01G439700 chr3B 732004086 732004651 565 True 920 920 95.958 1781 2348 1 chr3B.!!$R1 567
11 TraesCS2D01G439700 chr7B 158855625 158856190 565 True 915 915 95.789 1781 2348 1 chr7B.!!$R1 567
12 TraesCS2D01G439700 chr7D 205949595 205950471 876 False 350 350 74.324 318 1187 1 chr7D.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 688 0.25589 TGCCCTATCCTTGTCTTGGC 59.744 55.0 0.0 0.0 37.9 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 1631 0.036294 GGATTATACCCGCCCTCTGC 60.036 60.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.657836 TTATAGTTTTTCTCTAACGCCAGC 57.342 37.500 0.00 0.00 0.00 4.85
30 31 3.127425 AGTTTTTCTCTAACGCCAGCT 57.873 42.857 0.00 0.00 0.00 4.24
31 32 3.477530 AGTTTTTCTCTAACGCCAGCTT 58.522 40.909 0.00 0.00 0.00 3.74
32 33 4.638304 AGTTTTTCTCTAACGCCAGCTTA 58.362 39.130 0.00 0.00 0.00 3.09
33 34 5.061179 AGTTTTTCTCTAACGCCAGCTTAA 58.939 37.500 0.00 0.00 0.00 1.85
34 35 5.529800 AGTTTTTCTCTAACGCCAGCTTAAA 59.470 36.000 0.00 0.00 0.00 1.52
35 36 6.038936 AGTTTTTCTCTAACGCCAGCTTAAAA 59.961 34.615 0.00 0.00 0.00 1.52
36 37 6.380095 TTTTCTCTAACGCCAGCTTAAAAA 57.620 33.333 0.00 0.00 0.00 1.94
37 38 6.569179 TTTCTCTAACGCCAGCTTAAAAAT 57.431 33.333 0.00 0.00 0.00 1.82
38 39 7.675962 TTTCTCTAACGCCAGCTTAAAAATA 57.324 32.000 0.00 0.00 0.00 1.40
39 40 7.675962 TTCTCTAACGCCAGCTTAAAAATAA 57.324 32.000 0.00 0.00 0.00 1.40
40 41 7.303634 TCTCTAACGCCAGCTTAAAAATAAG 57.696 36.000 0.00 0.00 0.00 1.73
63 64 6.264909 GCATTAAGCATGTTGATTAACTGC 57.735 37.500 13.29 13.29 40.43 4.40
64 65 5.806502 GCATTAAGCATGTTGATTAACTGCA 59.193 36.000 19.32 0.00 40.43 4.41
65 66 6.310956 GCATTAAGCATGTTGATTAACTGCAA 59.689 34.615 19.32 10.97 40.43 4.08
66 67 7.010738 GCATTAAGCATGTTGATTAACTGCAAT 59.989 33.333 19.32 12.14 40.43 3.56
67 68 8.875803 CATTAAGCATGTTGATTAACTGCAATT 58.124 29.630 19.32 12.15 40.43 2.32
69 70 9.920133 TTAAGCATGTTGATTAACTGCAATTAA 57.080 25.926 19.32 2.41 40.36 1.40
70 71 8.830201 AAGCATGTTGATTAACTGCAATTAAA 57.170 26.923 19.32 0.00 40.36 1.52
71 72 8.243289 AGCATGTTGATTAACTGCAATTAAAC 57.757 30.769 19.32 2.71 40.36 2.01
72 73 8.090214 AGCATGTTGATTAACTGCAATTAAACT 58.910 29.630 19.32 0.00 40.36 2.66
73 74 8.164153 GCATGTTGATTAACTGCAATTAAACTG 58.836 33.333 4.24 0.00 39.05 3.16
74 75 9.409312 CATGTTGATTAACTGCAATTAAACTGA 57.591 29.630 4.24 0.00 37.68 3.41
75 76 9.979578 ATGTTGATTAACTGCAATTAAACTGAA 57.020 25.926 4.24 0.00 37.68 3.02
76 77 9.979578 TGTTGATTAACTGCAATTAAACTGAAT 57.020 25.926 4.24 0.00 37.68 2.57
81 82 9.995003 ATTAACTGCAATTAAACTGAATTTGGA 57.005 25.926 4.24 0.00 0.00 3.53
82 83 7.951530 AACTGCAATTAAACTGAATTTGGAG 57.048 32.000 3.55 3.55 0.00 3.86
100 101 8.992835 ATTTGGAGAAAGTTTATTGCAGATTC 57.007 30.769 0.00 0.00 0.00 2.52
103 104 8.862325 TGGAGAAAGTTTATTGCAGATTCTAA 57.138 30.769 0.00 0.00 0.00 2.10
115 116 7.994425 TTGCAGATTCTAATGTACCAAAAGA 57.006 32.000 0.00 0.00 0.00 2.52
129 130 9.685276 ATGTACCAAAAGATCTTCATACATGAA 57.315 29.630 21.29 4.66 43.94 2.57
137 138 7.558161 AGATCTTCATACATGAAAATCGCAA 57.442 32.000 10.95 0.00 44.78 4.85
140 141 9.882996 GATCTTCATACATGAAAATCGCAATTA 57.117 29.630 0.00 0.00 45.26 1.40
142 143 9.667989 TCTTCATACATGAAAATCGCAATTATG 57.332 29.630 0.00 0.00 45.26 1.90
143 144 9.454585 CTTCATACATGAAAATCGCAATTATGT 57.545 29.630 0.00 0.00 45.26 2.29
144 145 9.800433 TTCATACATGAAAATCGCAATTATGTT 57.200 25.926 0.00 0.00 43.26 2.71
145 146 9.449550 TCATACATGAAAATCGCAATTATGTTC 57.550 29.630 0.00 0.00 33.08 3.18
147 148 7.510428 ACATGAAAATCGCAATTATGTTCAC 57.490 32.000 0.00 0.00 27.50 3.18
148 149 6.251163 ACATGAAAATCGCAATTATGTTCACG 59.749 34.615 0.00 0.00 27.50 4.35
149 150 5.932661 TGAAAATCGCAATTATGTTCACGA 58.067 33.333 0.00 0.00 0.00 4.35
150 151 6.550843 TGAAAATCGCAATTATGTTCACGAT 58.449 32.000 0.00 0.00 41.58 3.73
153 154 5.733226 ATCGCAATTATGTTCACGATTCA 57.267 34.783 0.00 0.00 36.95 2.57
154 155 5.733226 TCGCAATTATGTTCACGATTCAT 57.267 34.783 0.00 0.00 0.00 2.57
155 156 6.836577 TCGCAATTATGTTCACGATTCATA 57.163 33.333 0.00 0.00 0.00 2.15
156 157 7.420184 TCGCAATTATGTTCACGATTCATAT 57.580 32.000 0.00 0.00 0.00 1.78
157 158 7.290118 TCGCAATTATGTTCACGATTCATATG 58.710 34.615 0.00 0.00 0.00 1.78
167 169 9.767684 TGTTCACGATTCATATGTTTTTATCAC 57.232 29.630 1.90 0.00 0.00 3.06
172 174 9.988350 ACGATTCATATGTTTTTATCACACTTC 57.012 29.630 1.90 0.00 0.00 3.01
182 184 6.767524 TTTTATCACACTTCACAGGTTTGT 57.232 33.333 0.00 0.00 38.31 2.83
243 245 7.849322 TTTGTCTAGTGCCTGGTATCATATA 57.151 36.000 0.00 0.00 0.00 0.86
249 251 9.100197 TCTAGTGCCTGGTATCATATATTTCAA 57.900 33.333 0.00 0.00 0.00 2.69
253 255 6.430925 TGCCTGGTATCATATATTTCAAGCAC 59.569 38.462 0.00 0.00 0.00 4.40
267 269 3.550820 TCAAGCACAAGTTAAAGGCTCA 58.449 40.909 0.00 0.00 32.84 4.26
286 288 3.761218 CTCAACAGGCTAAGAGACTCAGA 59.239 47.826 5.02 0.00 24.26 3.27
301 303 4.083003 AGACTCAGAGCGAAGTACTTCAAG 60.083 45.833 29.95 18.27 39.46 3.02
310 312 4.377022 GCGAAGTACTTCAAGCAAAATCGA 60.377 41.667 29.95 0.00 39.46 3.59
314 316 4.691216 AGTACTTCAAGCAAAATCGAGGTC 59.309 41.667 0.00 0.00 0.00 3.85
316 318 4.894784 ACTTCAAGCAAAATCGAGGTCTA 58.105 39.130 0.00 0.00 0.00 2.59
388 390 3.687212 GCTTAGAAGAACTTGAGAAGGCC 59.313 47.826 0.00 0.00 0.00 5.19
445 447 1.211949 GGTGGCCATGGTACTGTGTAT 59.788 52.381 9.72 0.00 0.00 2.29
451 453 4.384868 GGCCATGGTACTGTGTATAAAGGT 60.385 45.833 14.67 0.00 0.00 3.50
550 552 1.815003 GAGGTTGCCATCCTTTCACAG 59.185 52.381 0.00 0.00 35.20 3.66
568 570 4.992319 TCACAGATTAACCATCGAAACGTT 59.008 37.500 0.00 0.00 36.93 3.99
592 594 0.672342 GGCTATTTGGATGCTGCCTG 59.328 55.000 0.00 0.00 37.58 4.85
611 613 3.600388 CTGGAGACACAAGTCCCATTAC 58.400 50.000 0.00 0.00 46.15 1.89
626 628 6.542370 AGTCCCATTACTGGTTTATGAATTCG 59.458 38.462 0.04 0.00 41.37 3.34
628 630 6.540914 TCCCATTACTGGTTTATGAATTCGTC 59.459 38.462 2.72 0.00 41.37 4.20
634 636 6.899114 ACTGGTTTATGAATTCGTCTCAAAC 58.101 36.000 2.72 9.32 33.42 2.93
686 688 0.255890 TGCCCTATCCTTGTCTTGGC 59.744 55.000 0.00 0.00 37.90 4.52
695 697 1.134280 CCTTGTCTTGGCAGGATCGAT 60.134 52.381 1.54 0.00 0.00 3.59
704 706 2.173356 TGGCAGGATCGATTGAGGATTT 59.827 45.455 0.00 0.00 0.00 2.17
707 709 4.262635 GGCAGGATCGATTGAGGATTTCTA 60.263 45.833 0.00 0.00 0.00 2.10
712 714 7.117523 CAGGATCGATTGAGGATTTCTATTGAC 59.882 40.741 0.00 0.00 35.27 3.18
756 765 2.632512 TGCACTCATCCGCTCCATAATA 59.367 45.455 0.00 0.00 0.00 0.98
855 864 4.672024 CGAGGTATCCCTATCGATCAAACG 60.672 50.000 0.00 0.00 42.86 3.60
954 963 8.958119 ATAAAAGTGATGTTTATAGCTTCGGA 57.042 30.769 0.00 0.00 31.02 4.55
966 975 3.963428 AGCTTCGGAGTCATACTTGTT 57.037 42.857 0.00 0.00 0.00 2.83
984 993 5.048083 ACTTGTTGAGTTGCTCACAAGAAAA 60.048 36.000 27.44 8.59 43.55 2.29
1015 1024 2.156917 CTTTCATGCACTCAGAAGGCA 58.843 47.619 0.00 0.00 42.43 4.75
1032 1041 2.660189 GCACAAGCCTTATTGCACAT 57.340 45.000 5.55 0.00 34.97 3.21
1060 1069 6.576778 ACTTGGTAATAAGCCAGGATAAGT 57.423 37.500 0.00 0.00 36.69 2.24
1134 1144 0.534877 AGGTTGCAACACTCGCATCA 60.535 50.000 29.55 0.00 39.58 3.07
1136 1146 1.664016 GGTTGCAACACTCGCATCAAG 60.664 52.381 29.55 0.00 39.58 3.02
1158 1168 3.806949 TGCCTAAACTTGAAGGGTGAT 57.193 42.857 0.00 0.00 33.17 3.06
1200 1210 1.003580 GTGGAGATGGCACTGGAAAGA 59.996 52.381 0.00 0.00 0.00 2.52
1211 1221 5.012664 TGGCACTGGAAAGATTGTTAGTAGA 59.987 40.000 0.00 0.00 0.00 2.59
1239 1249 0.616891 ATACCGAAAAGGGGCGTTCT 59.383 50.000 0.00 0.00 46.96 3.01
1283 1293 4.687483 AGCTCAAATAAGCAACAACAATGC 59.313 37.500 0.00 0.00 45.00 3.56
1285 1295 3.986572 TCAAATAAGCAACAACAATGCCG 59.013 39.130 0.00 0.00 44.91 5.69
1287 1297 3.932545 ATAAGCAACAACAATGCCGAA 57.067 38.095 0.00 0.00 44.91 4.30
1341 1351 3.774766 TCCTACTATCAGCAAGCTTTCCA 59.225 43.478 0.00 0.00 0.00 3.53
1344 1354 2.289694 ACTATCAGCAAGCTTTCCACGT 60.290 45.455 0.00 0.00 0.00 4.49
1360 1370 1.541147 CACGTTGATCCACTTGCCATT 59.459 47.619 0.00 0.00 0.00 3.16
1361 1371 1.541147 ACGTTGATCCACTTGCCATTG 59.459 47.619 0.00 0.00 0.00 2.82
1365 1375 4.096231 CGTTGATCCACTTGCCATTGAATA 59.904 41.667 0.00 0.00 0.00 1.75
1398 1408 9.162764 TGTTCTTTAAGTTGCTATGTTCCTATC 57.837 33.333 0.00 0.00 0.00 2.08
1399 1409 9.384764 GTTCTTTAAGTTGCTATGTTCCTATCT 57.615 33.333 0.00 0.00 0.00 1.98
1400 1410 9.959721 TTCTTTAAGTTGCTATGTTCCTATCTT 57.040 29.630 0.00 0.00 0.00 2.40
1434 1444 5.705609 TTGCAGGAAGTTTGGAGAATTAC 57.294 39.130 0.00 0.00 0.00 1.89
1435 1445 3.751175 TGCAGGAAGTTTGGAGAATTACG 59.249 43.478 0.00 0.00 0.00 3.18
1438 1448 5.123979 GCAGGAAGTTTGGAGAATTACGAAT 59.876 40.000 0.00 0.00 0.00 3.34
1447 1457 8.583765 GTTTGGAGAATTACGAATTATGTTTGC 58.416 33.333 0.00 0.00 0.00 3.68
1449 1459 6.092944 TGGAGAATTACGAATTATGTTTGCGT 59.907 34.615 0.00 0.00 38.81 5.24
1450 1460 6.410914 GGAGAATTACGAATTATGTTTGCGTG 59.589 38.462 0.00 0.00 36.51 5.34
1459 1469 7.703621 ACGAATTATGTTTGCGTGTACTATAGT 59.296 33.333 10.87 10.87 33.52 2.12
1467 1477 8.192774 TGTTTGCGTGTACTATAGTTATTAGCT 58.807 33.333 11.40 0.00 0.00 3.32
1483 1493 8.574737 AGTTATTAGCTAGTGGTATTAGGTTCG 58.425 37.037 0.00 0.00 31.79 3.95
1484 1494 5.779529 TTAGCTAGTGGTATTAGGTTCGG 57.220 43.478 0.00 0.00 31.79 4.30
1485 1495 3.907221 AGCTAGTGGTATTAGGTTCGGA 58.093 45.455 0.00 0.00 0.00 4.55
1486 1496 3.635836 AGCTAGTGGTATTAGGTTCGGAC 59.364 47.826 0.00 0.00 0.00 4.79
1487 1497 3.635836 GCTAGTGGTATTAGGTTCGGACT 59.364 47.826 0.00 0.00 0.00 3.85
1488 1498 4.823989 GCTAGTGGTATTAGGTTCGGACTA 59.176 45.833 0.00 0.00 0.00 2.59
1489 1499 5.476254 GCTAGTGGTATTAGGTTCGGACTAT 59.524 44.000 0.00 0.00 0.00 2.12
1490 1500 6.349197 GCTAGTGGTATTAGGTTCGGACTATC 60.349 46.154 0.00 0.00 0.00 2.08
1491 1501 4.518211 AGTGGTATTAGGTTCGGACTATCG 59.482 45.833 0.00 0.00 0.00 2.92
1492 1502 3.822735 TGGTATTAGGTTCGGACTATCGG 59.177 47.826 0.00 0.00 0.00 4.18
1493 1503 3.366781 GGTATTAGGTTCGGACTATCGGC 60.367 52.174 0.00 0.00 0.00 5.54
1494 1504 1.766494 TTAGGTTCGGACTATCGGCA 58.234 50.000 0.00 0.00 0.00 5.69
1495 1505 1.027357 TAGGTTCGGACTATCGGCAC 58.973 55.000 0.00 0.00 0.00 5.01
1496 1506 1.227176 GGTTCGGACTATCGGCACC 60.227 63.158 0.00 0.00 0.00 5.01
1497 1507 1.227176 GTTCGGACTATCGGCACCC 60.227 63.158 0.00 0.00 0.00 4.61
1498 1508 2.428925 TTCGGACTATCGGCACCCC 61.429 63.158 0.00 0.00 0.00 4.95
1499 1509 2.838225 CGGACTATCGGCACCCCT 60.838 66.667 0.00 0.00 0.00 4.79
1500 1510 2.432300 CGGACTATCGGCACCCCTT 61.432 63.158 0.00 0.00 0.00 3.95
1501 1511 1.446366 GGACTATCGGCACCCCTTC 59.554 63.158 0.00 0.00 0.00 3.46
1502 1512 1.335132 GGACTATCGGCACCCCTTCA 61.335 60.000 0.00 0.00 0.00 3.02
1503 1513 0.759346 GACTATCGGCACCCCTTCAT 59.241 55.000 0.00 0.00 0.00 2.57
1504 1514 0.759346 ACTATCGGCACCCCTTCATC 59.241 55.000 0.00 0.00 0.00 2.92
1505 1515 0.758734 CTATCGGCACCCCTTCATCA 59.241 55.000 0.00 0.00 0.00 3.07
1506 1516 1.140852 CTATCGGCACCCCTTCATCAA 59.859 52.381 0.00 0.00 0.00 2.57
1507 1517 0.107017 ATCGGCACCCCTTCATCAAG 60.107 55.000 0.00 0.00 0.00 3.02
1508 1518 1.002134 CGGCACCCCTTCATCAAGT 60.002 57.895 0.00 0.00 0.00 3.16
1509 1519 1.308069 CGGCACCCCTTCATCAAGTG 61.308 60.000 0.00 0.00 0.00 3.16
1510 1520 0.967380 GGCACCCCTTCATCAAGTGG 60.967 60.000 0.00 0.00 33.46 4.00
1511 1521 0.251341 GCACCCCTTCATCAAGTGGT 60.251 55.000 0.00 0.00 40.80 4.16
1512 1522 1.823250 GCACCCCTTCATCAAGTGGTT 60.823 52.381 0.00 0.00 37.07 3.67
1513 1523 2.554344 GCACCCCTTCATCAAGTGGTTA 60.554 50.000 0.00 0.00 37.07 2.85
1514 1524 3.347216 CACCCCTTCATCAAGTGGTTAG 58.653 50.000 0.00 0.00 37.07 2.34
1515 1525 2.308866 ACCCCTTCATCAAGTGGTTAGG 59.691 50.000 0.00 0.00 37.07 2.69
1516 1526 2.576191 CCCCTTCATCAAGTGGTTAGGA 59.424 50.000 0.00 0.00 0.00 2.94
1517 1527 3.010138 CCCCTTCATCAAGTGGTTAGGAA 59.990 47.826 0.00 0.00 0.00 3.36
1518 1528 4.325344 CCCCTTCATCAAGTGGTTAGGAAT 60.325 45.833 0.00 0.00 0.00 3.01
1519 1529 5.104109 CCCCTTCATCAAGTGGTTAGGAATA 60.104 44.000 0.00 0.00 0.00 1.75
1520 1530 6.058183 CCCTTCATCAAGTGGTTAGGAATAG 58.942 44.000 0.00 0.00 0.00 1.73
1521 1531 5.529060 CCTTCATCAAGTGGTTAGGAATAGC 59.471 44.000 0.00 0.00 0.00 2.97
1522 1532 4.693283 TCATCAAGTGGTTAGGAATAGCG 58.307 43.478 0.00 0.00 0.00 4.26
1523 1533 4.404394 TCATCAAGTGGTTAGGAATAGCGA 59.596 41.667 0.00 0.00 0.00 4.93
1524 1534 4.811969 TCAAGTGGTTAGGAATAGCGAA 57.188 40.909 0.00 0.00 0.00 4.70
1525 1535 5.155278 TCAAGTGGTTAGGAATAGCGAAA 57.845 39.130 0.00 0.00 0.00 3.46
1526 1536 5.175859 TCAAGTGGTTAGGAATAGCGAAAG 58.824 41.667 0.00 0.00 0.00 2.62
1527 1537 4.820894 AGTGGTTAGGAATAGCGAAAGT 57.179 40.909 0.00 0.00 0.00 2.66
1528 1538 5.161943 AGTGGTTAGGAATAGCGAAAGTT 57.838 39.130 0.00 0.00 0.00 2.66
1529 1539 4.935808 AGTGGTTAGGAATAGCGAAAGTTG 59.064 41.667 0.00 0.00 0.00 3.16
1530 1540 4.694037 GTGGTTAGGAATAGCGAAAGTTGT 59.306 41.667 0.00 0.00 0.00 3.32
1531 1541 5.180680 GTGGTTAGGAATAGCGAAAGTTGTT 59.819 40.000 0.00 0.00 0.00 2.83
1532 1542 5.180492 TGGTTAGGAATAGCGAAAGTTGTTG 59.820 40.000 0.00 0.00 0.00 3.33
1533 1543 3.831715 AGGAATAGCGAAAGTTGTTGC 57.168 42.857 0.00 0.00 34.54 4.17
1534 1544 3.412386 AGGAATAGCGAAAGTTGTTGCT 58.588 40.909 0.00 2.79 38.90 3.91
1535 1545 4.575885 AGGAATAGCGAAAGTTGTTGCTA 58.424 39.130 6.47 6.47 41.31 3.49
1536 1546 5.001232 AGGAATAGCGAAAGTTGTTGCTAA 58.999 37.500 7.72 0.00 41.31 3.09
1537 1547 5.122396 AGGAATAGCGAAAGTTGTTGCTAAG 59.878 40.000 7.72 0.00 41.31 2.18
1538 1548 5.121768 GGAATAGCGAAAGTTGTTGCTAAGA 59.878 40.000 7.72 0.00 42.60 2.10
1539 1549 6.183360 GGAATAGCGAAAGTTGTTGCTAAGAT 60.183 38.462 7.72 0.21 42.60 2.40
1540 1550 4.410492 AGCGAAAGTTGTTGCTAAGATG 57.590 40.909 0.00 0.00 35.56 2.90
1541 1551 3.189287 AGCGAAAGTTGTTGCTAAGATGG 59.811 43.478 0.00 0.00 35.56 3.51
1542 1552 3.058224 GCGAAAGTTGTTGCTAAGATGGT 60.058 43.478 0.00 0.00 0.00 3.55
1543 1553 4.466828 CGAAAGTTGTTGCTAAGATGGTG 58.533 43.478 0.00 0.00 0.00 4.17
1544 1554 4.613622 CGAAAGTTGTTGCTAAGATGGTGG 60.614 45.833 0.00 0.00 0.00 4.61
1545 1555 2.162681 AGTTGTTGCTAAGATGGTGGC 58.837 47.619 0.00 0.00 0.00 5.01
1546 1556 2.162681 GTTGTTGCTAAGATGGTGGCT 58.837 47.619 0.00 0.00 0.00 4.75
1547 1557 2.558359 GTTGTTGCTAAGATGGTGGCTT 59.442 45.455 0.00 0.00 0.00 4.35
1548 1558 2.875296 TGTTGCTAAGATGGTGGCTTT 58.125 42.857 0.00 0.00 0.00 3.51
1549 1559 2.557924 TGTTGCTAAGATGGTGGCTTTG 59.442 45.455 0.00 0.00 0.00 2.77
1550 1560 1.838112 TGCTAAGATGGTGGCTTTGG 58.162 50.000 0.00 0.00 0.00 3.28
1551 1561 1.354031 TGCTAAGATGGTGGCTTTGGA 59.646 47.619 0.00 0.00 0.00 3.53
1552 1562 1.745653 GCTAAGATGGTGGCTTTGGAC 59.254 52.381 0.00 0.00 0.00 4.02
1553 1563 2.879756 GCTAAGATGGTGGCTTTGGACA 60.880 50.000 0.00 0.00 0.00 4.02
1554 1564 2.380064 AAGATGGTGGCTTTGGACAA 57.620 45.000 0.00 0.00 29.01 3.18
1555 1565 2.380064 AGATGGTGGCTTTGGACAAA 57.620 45.000 0.00 0.00 29.01 2.83
1556 1566 1.963515 AGATGGTGGCTTTGGACAAAC 59.036 47.619 0.00 0.00 29.01 2.93
1557 1567 1.963515 GATGGTGGCTTTGGACAAACT 59.036 47.619 0.00 0.00 29.01 2.66
1558 1568 1.110442 TGGTGGCTTTGGACAAACTG 58.890 50.000 0.00 0.00 29.01 3.16
1559 1569 1.341482 TGGTGGCTTTGGACAAACTGA 60.341 47.619 0.00 0.00 29.01 3.41
1560 1570 1.963515 GGTGGCTTTGGACAAACTGAT 59.036 47.619 0.00 0.00 29.01 2.90
1561 1571 2.288395 GGTGGCTTTGGACAAACTGATG 60.288 50.000 0.00 0.00 29.01 3.07
1562 1572 2.362077 GTGGCTTTGGACAAACTGATGT 59.638 45.455 0.00 0.00 35.90 3.06
1563 1573 3.568007 GTGGCTTTGGACAAACTGATGTA 59.432 43.478 0.00 0.00 32.57 2.29
1564 1574 3.568007 TGGCTTTGGACAAACTGATGTAC 59.432 43.478 0.00 0.00 34.56 2.90
1565 1575 3.821033 GGCTTTGGACAAACTGATGTACT 59.179 43.478 0.00 0.00 35.07 2.73
1566 1576 5.001232 GGCTTTGGACAAACTGATGTACTA 58.999 41.667 0.00 0.00 35.07 1.82
1567 1577 5.106673 GGCTTTGGACAAACTGATGTACTAC 60.107 44.000 0.00 0.00 35.07 2.73
1568 1578 5.701290 GCTTTGGACAAACTGATGTACTACT 59.299 40.000 0.00 0.00 35.07 2.57
1569 1579 6.204882 GCTTTGGACAAACTGATGTACTACTT 59.795 38.462 0.00 0.00 35.07 2.24
1570 1580 7.255139 GCTTTGGACAAACTGATGTACTACTTT 60.255 37.037 0.00 0.00 35.07 2.66
1571 1581 7.490962 TTGGACAAACTGATGTACTACTTTG 57.509 36.000 0.00 0.00 35.07 2.77
1572 1582 6.588204 TGGACAAACTGATGTACTACTTTGT 58.412 36.000 0.00 4.13 35.07 2.83
1573 1583 7.728148 TGGACAAACTGATGTACTACTTTGTA 58.272 34.615 0.00 0.00 35.07 2.41
1574 1584 8.205512 TGGACAAACTGATGTACTACTTTGTAA 58.794 33.333 0.00 0.00 35.07 2.41
1575 1585 8.709646 GGACAAACTGATGTACTACTTTGTAAG 58.290 37.037 0.00 0.00 32.57 2.34
1576 1586 8.603242 ACAAACTGATGTACTACTTTGTAAGG 57.397 34.615 0.00 0.00 30.70 2.69
1577 1587 8.208903 ACAAACTGATGTACTACTTTGTAAGGT 58.791 33.333 0.00 0.00 30.70 3.50
1578 1588 8.709646 CAAACTGATGTACTACTTTGTAAGGTC 58.290 37.037 0.00 0.00 0.00 3.85
1579 1589 7.778185 ACTGATGTACTACTTTGTAAGGTCT 57.222 36.000 0.00 0.00 0.00 3.85
1580 1590 8.191534 ACTGATGTACTACTTTGTAAGGTCTT 57.808 34.615 0.00 0.00 0.00 3.01
1581 1591 8.648693 ACTGATGTACTACTTTGTAAGGTCTTT 58.351 33.333 0.00 0.00 0.00 2.52
1582 1592 8.827177 TGATGTACTACTTTGTAAGGTCTTTG 57.173 34.615 0.00 0.00 0.00 2.77
1583 1593 8.426489 TGATGTACTACTTTGTAAGGTCTTTGT 58.574 33.333 0.00 0.00 0.00 2.83
1584 1594 8.603242 ATGTACTACTTTGTAAGGTCTTTGTG 57.397 34.615 0.00 0.00 0.00 3.33
1585 1595 7.784037 TGTACTACTTTGTAAGGTCTTTGTGA 58.216 34.615 0.00 0.00 0.00 3.58
1586 1596 8.259411 TGTACTACTTTGTAAGGTCTTTGTGAA 58.741 33.333 0.00 0.00 0.00 3.18
1587 1597 9.269453 GTACTACTTTGTAAGGTCTTTGTGAAT 57.731 33.333 0.00 0.00 0.00 2.57
1589 1599 9.841295 ACTACTTTGTAAGGTCTTTGTGAATAA 57.159 29.630 0.00 0.00 0.00 1.40
1613 1623 8.456904 AATTAATAAAATAGCTGCATGCATCG 57.543 30.769 22.97 12.00 45.94 3.84
1614 1624 2.129823 AAAATAGCTGCATGCATCGC 57.870 45.000 22.97 21.81 45.94 4.58
1615 1625 0.313043 AAATAGCTGCATGCATCGCC 59.687 50.000 22.97 10.07 45.94 5.54
1616 1626 0.536687 AATAGCTGCATGCATCGCCT 60.537 50.000 22.97 16.58 45.94 5.52
1617 1627 0.322648 ATAGCTGCATGCATCGCCTA 59.677 50.000 22.97 18.09 45.94 3.93
1618 1628 0.320160 TAGCTGCATGCATCGCCTAG 60.320 55.000 22.97 8.76 45.94 3.02
1619 1629 1.596203 GCTGCATGCATCGCCTAGA 60.596 57.895 22.97 0.00 42.31 2.43
1620 1630 0.954449 GCTGCATGCATCGCCTAGAT 60.954 55.000 22.97 0.00 42.31 1.98
1628 1638 2.360138 ATCGCCTAGATGCAGAGGG 58.640 57.895 12.64 4.27 38.36 4.30
1629 1639 1.825281 ATCGCCTAGATGCAGAGGGC 61.825 60.000 12.64 11.92 45.13 5.19
1639 1649 3.534721 GCAGAGGGCGGGTATAATC 57.465 57.895 0.00 0.00 0.00 1.75
1640 1650 0.036294 GCAGAGGGCGGGTATAATCC 60.036 60.000 0.00 0.00 0.00 3.01
1641 1651 1.645710 CAGAGGGCGGGTATAATCCT 58.354 55.000 0.00 0.00 0.00 3.24
1642 1652 1.550976 CAGAGGGCGGGTATAATCCTC 59.449 57.143 0.00 0.00 43.07 3.71
1643 1653 0.903236 GAGGGCGGGTATAATCCTCC 59.097 60.000 0.00 0.00 38.36 4.30
1644 1654 0.492276 AGGGCGGGTATAATCCTCCT 59.508 55.000 3.35 2.53 0.00 3.69
1645 1655 1.132495 AGGGCGGGTATAATCCTCCTT 60.132 52.381 3.35 0.00 0.00 3.36
1646 1656 1.703513 GGGCGGGTATAATCCTCCTTT 59.296 52.381 3.35 0.00 0.00 3.11
1647 1657 2.107726 GGGCGGGTATAATCCTCCTTTT 59.892 50.000 3.35 0.00 0.00 2.27
1648 1658 3.436035 GGGCGGGTATAATCCTCCTTTTT 60.436 47.826 3.35 0.00 0.00 1.94
1649 1659 3.819337 GGCGGGTATAATCCTCCTTTTTC 59.181 47.826 0.00 0.00 0.00 2.29
1650 1660 4.445879 GGCGGGTATAATCCTCCTTTTTCT 60.446 45.833 0.00 0.00 0.00 2.52
1651 1661 5.221783 GGCGGGTATAATCCTCCTTTTTCTA 60.222 44.000 0.00 0.00 0.00 2.10
1652 1662 6.293698 GCGGGTATAATCCTCCTTTTTCTAA 58.706 40.000 0.00 0.00 0.00 2.10
1653 1663 6.769341 GCGGGTATAATCCTCCTTTTTCTAAA 59.231 38.462 0.00 0.00 0.00 1.85
1654 1664 7.283807 GCGGGTATAATCCTCCTTTTTCTAAAA 59.716 37.037 0.00 0.00 0.00 1.52
1655 1665 9.181061 CGGGTATAATCCTCCTTTTTCTAAAAA 57.819 33.333 1.05 1.05 36.53 1.94
1685 1695 9.984190 GCTATTAGCTAGTGGTTAACTTATTCT 57.016 33.333 8.47 0.00 40.56 2.40
1695 1705 9.914834 AGTGGTTAACTTATTCTTTATATGGCA 57.085 29.630 5.42 0.00 34.57 4.92
1709 1719 9.695526 TCTTTATATGGCATATCAAAATGTTGC 57.304 29.630 22.63 0.00 34.50 4.17
1710 1720 9.478768 CTTTATATGGCATATCAAAATGTTGCA 57.521 29.630 22.63 0.00 34.50 4.08
1711 1721 9.828039 TTTATATGGCATATCAAAATGTTGCAA 57.172 25.926 22.63 0.00 34.50 4.08
1712 1722 9.828039 TTATATGGCATATCAAAATGTTGCAAA 57.172 25.926 22.63 5.02 34.50 3.68
1713 1723 8.734218 ATATGGCATATCAAAATGTTGCAAAA 57.266 26.923 14.20 0.00 34.50 2.44
1714 1724 7.633193 ATGGCATATCAAAATGTTGCAAAAT 57.367 28.000 0.00 0.00 34.50 1.82
1715 1725 6.843208 TGGCATATCAAAATGTTGCAAAATG 58.157 32.000 1.98 0.00 34.50 2.32
1716 1726 6.430308 TGGCATATCAAAATGTTGCAAAATGT 59.570 30.769 1.98 0.00 34.50 2.71
1717 1727 7.040617 TGGCATATCAAAATGTTGCAAAATGTT 60.041 29.630 1.98 0.14 34.50 2.71
1718 1728 8.449397 GGCATATCAAAATGTTGCAAAATGTTA 58.551 29.630 4.63 0.00 34.50 2.41
1719 1729 9.823098 GCATATCAAAATGTTGCAAAATGTTAA 57.177 25.926 4.63 0.00 34.50 2.01
1724 1734 9.499585 TCAAAATGTTGCAAAATGTTAACATTG 57.500 25.926 29.54 21.84 46.89 2.82
1725 1735 7.911362 AAATGTTGCAAAATGTTAACATTGC 57.089 28.000 29.54 28.78 46.89 3.56
1726 1736 5.075670 TGTTGCAAAATGTTAACATTGCG 57.924 34.783 29.54 23.66 45.06 4.85
1727 1737 4.568359 TGTTGCAAAATGTTAACATTGCGT 59.432 33.333 29.54 17.38 45.06 5.24
1728 1738 4.705554 TGCAAAATGTTAACATTGCGTG 57.294 36.364 29.54 25.75 45.06 5.34
1729 1739 4.115516 TGCAAAATGTTAACATTGCGTGT 58.884 34.783 29.54 14.21 45.06 4.49
1730 1740 5.281727 TGCAAAATGTTAACATTGCGTGTA 58.718 33.333 29.54 23.04 45.06 2.90
1731 1741 5.174035 TGCAAAATGTTAACATTGCGTGTAC 59.826 36.000 29.54 16.85 45.06 2.90
1732 1742 5.174035 GCAAAATGTTAACATTGCGTGTACA 59.826 36.000 29.54 0.00 45.06 2.90
1733 1743 6.568057 CAAAATGTTAACATTGCGTGTACAC 58.432 36.000 29.54 16.32 45.06 2.90
1734 1744 5.682943 AATGTTAACATTGCGTGTACACT 57.317 34.783 28.59 5.71 44.22 3.55
1735 1745 6.788684 AATGTTAACATTGCGTGTACACTA 57.211 33.333 28.59 9.81 44.22 2.74
1736 1746 6.978343 ATGTTAACATTGCGTGTACACTAT 57.022 33.333 23.01 11.08 41.14 2.12
1737 1747 8.481974 AATGTTAACATTGCGTGTACACTATA 57.518 30.769 28.59 8.61 44.22 1.31
1738 1748 7.886405 TGTTAACATTGCGTGTACACTATAA 57.114 32.000 23.01 14.83 41.14 0.98
1739 1749 8.307921 TGTTAACATTGCGTGTACACTATAAA 57.692 30.769 23.01 12.05 41.14 1.40
1740 1750 8.937884 TGTTAACATTGCGTGTACACTATAAAT 58.062 29.630 23.01 13.58 41.14 1.40
1743 1753 7.473027 ACATTGCGTGTACACTATAAATACC 57.527 36.000 23.01 2.02 39.91 2.73
1744 1754 7.042950 ACATTGCGTGTACACTATAAATACCA 58.957 34.615 23.01 4.30 39.91 3.25
1745 1755 7.713507 ACATTGCGTGTACACTATAAATACCAT 59.286 33.333 23.01 0.00 39.91 3.55
1746 1756 8.556194 CATTGCGTGTACACTATAAATACCATT 58.444 33.333 23.01 0.00 0.00 3.16
1747 1757 8.495361 TTGCGTGTACACTATAAATACCATTT 57.505 30.769 23.01 0.00 0.00 2.32
1748 1758 7.911343 TGCGTGTACACTATAAATACCATTTG 58.089 34.615 23.01 3.54 0.00 2.32
1749 1759 7.549842 TGCGTGTACACTATAAATACCATTTGT 59.450 33.333 23.01 0.00 0.00 2.83
1750 1760 7.849026 GCGTGTACACTATAAATACCATTTGTG 59.151 37.037 23.01 2.85 0.00 3.33
1751 1761 8.875803 CGTGTACACTATAAATACCATTTGTGT 58.124 33.333 23.01 0.00 40.02 3.72
1761 1771 7.985634 AAATACCATTTGTGTTTATCATCGC 57.014 32.000 0.00 0.00 36.62 4.58
1762 1772 4.370364 ACCATTTGTGTTTATCATCGCC 57.630 40.909 0.00 0.00 0.00 5.54
1763 1773 3.761218 ACCATTTGTGTTTATCATCGCCA 59.239 39.130 0.00 0.00 0.00 5.69
1764 1774 4.142403 ACCATTTGTGTTTATCATCGCCAG 60.142 41.667 0.00 0.00 0.00 4.85
1765 1775 4.353737 CATTTGTGTTTATCATCGCCAGG 58.646 43.478 0.00 0.00 0.00 4.45
1766 1776 3.342377 TTGTGTTTATCATCGCCAGGA 57.658 42.857 0.00 0.00 0.00 3.86
1767 1777 3.558931 TGTGTTTATCATCGCCAGGAT 57.441 42.857 0.00 0.00 35.09 3.24
1777 1787 2.430248 TCGCCAGGATGAGTAGTACA 57.570 50.000 2.52 0.00 39.69 2.90
1778 1788 2.022195 TCGCCAGGATGAGTAGTACAC 58.978 52.381 2.52 0.00 39.69 2.90
1779 1789 1.067212 CGCCAGGATGAGTAGTACACC 59.933 57.143 2.52 0.94 39.69 4.16
1872 1882 7.558807 TGCTAATCTTCACTTGATCCAAATCAT 59.441 33.333 0.00 0.00 41.49 2.45
1889 1899 9.656040 TCCAAATCATCGATTCAAATTCAAATT 57.344 25.926 0.00 0.00 30.29 1.82
2156 2167 2.158385 TGGCCAAGTCCCACATTTTACT 60.158 45.455 0.61 0.00 0.00 2.24
2234 2246 7.514805 AGCAAAAGTAAAAGAAAAACAAACCG 58.485 30.769 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.019094 GCTGGCGTTAGAGAAAAACTATAAAAA 58.981 33.333 0.00 0.00 34.69 1.94
4 5 7.389607 AGCTGGCGTTAGAGAAAAACTATAAAA 59.610 33.333 0.00 0.00 34.69 1.52
6 7 6.403878 AGCTGGCGTTAGAGAAAAACTATAA 58.596 36.000 0.00 0.00 31.08 0.98
7 8 5.974108 AGCTGGCGTTAGAGAAAAACTATA 58.026 37.500 0.00 0.00 0.00 1.31
8 9 4.833390 AGCTGGCGTTAGAGAAAAACTAT 58.167 39.130 0.00 0.00 0.00 2.12
9 10 4.267349 AGCTGGCGTTAGAGAAAAACTA 57.733 40.909 0.00 0.00 0.00 2.24
10 11 3.127425 AGCTGGCGTTAGAGAAAAACT 57.873 42.857 0.00 0.00 0.00 2.66
11 12 3.898517 AAGCTGGCGTTAGAGAAAAAC 57.101 42.857 0.00 0.00 0.00 2.43
12 13 6.380095 TTTTAAGCTGGCGTTAGAGAAAAA 57.620 33.333 0.00 0.00 0.00 1.94
13 14 6.380095 TTTTTAAGCTGGCGTTAGAGAAAA 57.620 33.333 0.00 0.00 0.00 2.29
14 15 6.569179 ATTTTTAAGCTGGCGTTAGAGAAA 57.431 33.333 0.00 0.00 0.00 2.52
15 16 7.625606 GCTTATTTTTAAGCTGGCGTTAGAGAA 60.626 37.037 9.83 0.00 46.49 2.87
16 17 6.183360 GCTTATTTTTAAGCTGGCGTTAGAGA 60.183 38.462 9.83 0.00 46.49 3.10
17 18 5.965918 GCTTATTTTTAAGCTGGCGTTAGAG 59.034 40.000 9.83 0.00 46.49 2.43
18 19 5.875930 GCTTATTTTTAAGCTGGCGTTAGA 58.124 37.500 9.83 0.00 46.49 2.10
36 37 9.740239 CAGTTAATCAACATGCTTAATGCTTAT 57.260 29.630 0.00 0.00 40.22 1.73
37 38 7.701924 GCAGTTAATCAACATGCTTAATGCTTA 59.298 33.333 0.00 0.00 40.22 3.09
38 39 6.532657 GCAGTTAATCAACATGCTTAATGCTT 59.467 34.615 0.00 0.00 40.22 3.91
39 40 6.038356 GCAGTTAATCAACATGCTTAATGCT 58.962 36.000 0.00 0.00 40.22 3.79
40 41 5.806502 TGCAGTTAATCAACATGCTTAATGC 59.193 36.000 0.00 5.70 40.22 3.56
41 42 7.815398 TTGCAGTTAATCAACATGCTTAATG 57.185 32.000 0.00 0.00 42.48 1.90
43 44 9.920133 TTAATTGCAGTTAATCAACATGCTTAA 57.080 25.926 10.08 1.68 38.51 1.85
44 45 9.920133 TTTAATTGCAGTTAATCAACATGCTTA 57.080 25.926 14.31 0.00 38.51 3.09
45 46 8.711457 GTTTAATTGCAGTTAATCAACATGCTT 58.289 29.630 14.31 0.00 38.51 3.91
46 47 8.090214 AGTTTAATTGCAGTTAATCAACATGCT 58.910 29.630 19.10 6.31 38.51 3.79
47 48 8.164153 CAGTTTAATTGCAGTTAATCAACATGC 58.836 33.333 19.10 0.00 38.34 4.06
48 49 9.409312 TCAGTTTAATTGCAGTTAATCAACATG 57.591 29.630 19.10 11.63 37.10 3.21
49 50 9.979578 TTCAGTTTAATTGCAGTTAATCAACAT 57.020 25.926 19.10 2.57 37.10 2.71
50 51 9.979578 ATTCAGTTTAATTGCAGTTAATCAACA 57.020 25.926 19.10 3.20 37.10 3.33
55 56 9.995003 TCCAAATTCAGTTTAATTGCAGTTAAT 57.005 25.926 14.31 0.00 0.00 1.40
56 57 9.474920 CTCCAAATTCAGTTTAATTGCAGTTAA 57.525 29.630 10.08 10.08 0.00 2.01
57 58 8.855110 TCTCCAAATTCAGTTTAATTGCAGTTA 58.145 29.630 0.00 0.00 0.00 2.24
58 59 7.725251 TCTCCAAATTCAGTTTAATTGCAGTT 58.275 30.769 0.00 0.00 0.00 3.16
59 60 7.288810 TCTCCAAATTCAGTTTAATTGCAGT 57.711 32.000 0.00 0.00 0.00 4.40
60 61 8.592105 TTTCTCCAAATTCAGTTTAATTGCAG 57.408 30.769 0.00 0.00 0.00 4.41
61 62 8.203485 ACTTTCTCCAAATTCAGTTTAATTGCA 58.797 29.630 0.00 0.00 0.00 4.08
62 63 8.593492 ACTTTCTCCAAATTCAGTTTAATTGC 57.407 30.769 0.00 0.00 0.00 3.56
68 69 9.045223 GCAATAAACTTTCTCCAAATTCAGTTT 57.955 29.630 0.00 0.00 33.61 2.66
69 70 8.203485 TGCAATAAACTTTCTCCAAATTCAGTT 58.797 29.630 0.00 0.00 0.00 3.16
70 71 7.725251 TGCAATAAACTTTCTCCAAATTCAGT 58.275 30.769 0.00 0.00 0.00 3.41
71 72 8.084073 TCTGCAATAAACTTTCTCCAAATTCAG 58.916 33.333 0.00 0.00 0.00 3.02
72 73 7.950512 TCTGCAATAAACTTTCTCCAAATTCA 58.049 30.769 0.00 0.00 0.00 2.57
73 74 8.992835 ATCTGCAATAAACTTTCTCCAAATTC 57.007 30.769 0.00 0.00 0.00 2.17
74 75 9.428097 GAATCTGCAATAAACTTTCTCCAAATT 57.572 29.630 0.00 0.00 0.00 1.82
75 76 8.810041 AGAATCTGCAATAAACTTTCTCCAAAT 58.190 29.630 0.00 0.00 0.00 2.32
76 77 8.181904 AGAATCTGCAATAAACTTTCTCCAAA 57.818 30.769 0.00 0.00 0.00 3.28
77 78 7.765695 AGAATCTGCAATAAACTTTCTCCAA 57.234 32.000 0.00 0.00 0.00 3.53
78 79 8.862325 TTAGAATCTGCAATAAACTTTCTCCA 57.138 30.769 0.00 0.00 0.00 3.86
79 80 9.727627 CATTAGAATCTGCAATAAACTTTCTCC 57.272 33.333 0.00 0.00 0.00 3.71
91 92 7.994425 TCTTTTGGTACATTAGAATCTGCAA 57.006 32.000 0.00 0.00 39.30 4.08
103 104 9.685276 TTCATGTATGAAGATCTTTTGGTACAT 57.315 29.630 9.87 16.36 41.51 2.29
114 115 8.792831 AATTGCGATTTTCATGTATGAAGATC 57.207 30.769 20.03 20.03 46.55 2.75
121 122 9.236691 GTGAACATAATTGCGATTTTCATGTAT 57.763 29.630 13.06 5.87 28.05 2.29
129 130 6.550843 TGAATCGTGAACATAATTGCGATTT 58.449 32.000 4.06 0.00 45.15 2.17
142 143 9.767684 TGTGATAAAAACATATGAATCGTGAAC 57.232 29.630 10.38 0.56 0.00 3.18
143 144 9.767684 GTGTGATAAAAACATATGAATCGTGAA 57.232 29.630 10.38 0.00 0.00 3.18
144 145 9.161629 AGTGTGATAAAAACATATGAATCGTGA 57.838 29.630 10.38 0.00 0.00 4.35
145 146 9.773328 AAGTGTGATAAAAACATATGAATCGTG 57.227 29.630 10.38 0.00 0.00 4.35
147 148 9.986833 TGAAGTGTGATAAAAACATATGAATCG 57.013 29.630 10.38 0.00 0.00 3.34
151 152 8.729756 CCTGTGAAGTGTGATAAAAACATATGA 58.270 33.333 10.38 0.00 0.00 2.15
153 154 8.635765 ACCTGTGAAGTGTGATAAAAACATAT 57.364 30.769 0.00 0.00 0.00 1.78
154 155 8.458573 AACCTGTGAAGTGTGATAAAAACATA 57.541 30.769 0.00 0.00 0.00 2.29
155 156 6.959639 ACCTGTGAAGTGTGATAAAAACAT 57.040 33.333 0.00 0.00 0.00 2.71
156 157 6.767524 AACCTGTGAAGTGTGATAAAAACA 57.232 33.333 0.00 0.00 0.00 2.83
157 158 7.033185 ACAAACCTGTGAAGTGTGATAAAAAC 58.967 34.615 0.00 0.00 33.30 2.43
167 169 3.510719 CCACAAACAAACCTGTGAAGTG 58.489 45.455 3.83 0.00 44.68 3.16
172 174 2.099405 AGACCCACAAACAAACCTGTG 58.901 47.619 0.00 0.00 42.14 3.66
182 184 1.817740 GCCAACTGCTAGACCCACAAA 60.818 52.381 0.00 0.00 36.87 2.83
220 222 8.435931 AATATATGATACCAGGCACTAGACAA 57.564 34.615 0.00 0.00 36.02 3.18
243 245 5.068987 TGAGCCTTTAACTTGTGCTTGAAAT 59.931 36.000 0.00 0.00 31.23 2.17
249 251 3.287222 TGTTGAGCCTTTAACTTGTGCT 58.713 40.909 0.00 0.00 34.40 4.40
253 255 2.887152 AGCCTGTTGAGCCTTTAACTTG 59.113 45.455 0.00 0.00 0.00 3.16
267 269 2.495669 GCTCTGAGTCTCTTAGCCTGTT 59.504 50.000 13.19 0.00 0.00 3.16
286 288 4.377431 CGATTTTGCTTGAAGTACTTCGCT 60.377 41.667 26.35 11.52 42.28 4.93
301 303 6.417191 TGTAACAATAGACCTCGATTTTGC 57.583 37.500 0.00 0.00 0.00 3.68
310 312 5.415701 CACCAATTGCTGTAACAATAGACCT 59.584 40.000 0.00 0.00 39.32 3.85
314 316 5.182950 TGTCCACCAATTGCTGTAACAATAG 59.817 40.000 0.00 0.00 39.32 1.73
316 318 3.894427 TGTCCACCAATTGCTGTAACAAT 59.106 39.130 0.00 0.00 42.01 2.71
388 390 3.383761 GGCCTCATCAAACTTGTTTGTG 58.616 45.455 20.99 18.00 33.82 3.33
451 453 7.661437 GCAACCACATCCTGATTTGATAGTATA 59.339 37.037 0.00 0.00 0.00 1.47
514 516 5.106317 GGCAACCTCGTTTATGAAATCTTCA 60.106 40.000 0.00 0.00 45.01 3.02
550 552 5.272167 TCACAACGTTTCGATGGTTAATC 57.728 39.130 0.00 0.00 34.07 1.75
568 570 2.646930 CAGCATCCAAATAGCCTCACA 58.353 47.619 0.00 0.00 0.00 3.58
592 594 3.600388 CAGTAATGGGACTTGTGTCTCC 58.400 50.000 0.00 0.00 42.86 3.71
626 628 4.369182 TCAGAAAGAGTTCCGTTTGAGAC 58.631 43.478 0.00 0.00 33.92 3.36
628 630 4.981389 CTCAGAAAGAGTTCCGTTTGAG 57.019 45.455 0.00 0.00 39.62 3.02
649 651 2.945668 GGCACCTTCAACATGGAGATAC 59.054 50.000 0.00 0.00 0.00 2.24
686 688 7.117523 GTCAATAGAAATCCTCAATCGATCCTG 59.882 40.741 0.00 0.00 0.00 3.86
695 697 3.938963 GCGGTGTCAATAGAAATCCTCAA 59.061 43.478 0.00 0.00 0.00 3.02
704 706 1.001974 AGCACTTGCGGTGTCAATAGA 59.998 47.619 10.54 0.00 46.86 1.98
707 709 0.250467 AGAGCACTTGCGGTGTCAAT 60.250 50.000 10.54 0.00 46.86 2.57
756 765 4.910195 TGGCAGATTTAACATCTCTGTGT 58.090 39.130 0.00 0.00 38.88 3.72
855 864 0.678048 GGATGGCAGTTGTCACTCCC 60.678 60.000 0.00 0.00 30.12 4.30
954 963 4.752101 GTGAGCAACTCAACAAGTATGACT 59.248 41.667 0.00 0.00 42.46 3.41
984 993 1.617850 TGCATGAAAGCGGATGGTTTT 59.382 42.857 0.00 0.00 45.27 2.43
1015 1024 4.870123 TGAAATGTGCAATAAGGCTTGT 57.130 36.364 10.69 0.00 34.04 3.16
1032 1041 5.636123 TCCTGGCTTATTACCAAGTTGAAA 58.364 37.500 3.87 0.00 36.56 2.69
1134 1144 4.082125 CACCCTTCAAGTTTAGGCATCTT 58.918 43.478 0.00 0.00 0.00 2.40
1136 1146 3.686016 TCACCCTTCAAGTTTAGGCATC 58.314 45.455 0.00 0.00 0.00 3.91
1158 1168 0.615331 GTCTCATGGTTGGCCTCTCA 59.385 55.000 3.32 0.00 35.27 3.27
1211 1221 5.870433 CGCCCCTTTTCGGTATTTTTATTTT 59.130 36.000 0.00 0.00 0.00 1.82
1221 1231 0.320946 CAGAACGCCCCTTTTCGGTA 60.321 55.000 0.00 0.00 0.00 4.02
1224 1234 1.966451 AGCAGAACGCCCCTTTTCG 60.966 57.895 0.00 0.00 44.04 3.46
1228 1238 2.348998 CTCAGCAGAACGCCCCTT 59.651 61.111 0.00 0.00 44.04 3.95
1230 1240 2.521958 TTAGCTCAGCAGAACGCCCC 62.522 60.000 0.00 0.00 44.04 5.80
1239 1249 1.229428 GTGTGCAGTTTAGCTCAGCA 58.771 50.000 0.00 0.00 38.51 4.41
1283 1293 3.433615 GCTATACTGCCTGCTATTTTCGG 59.566 47.826 0.00 0.00 0.00 4.30
1285 1295 3.120511 GCGCTATACTGCCTGCTATTTTC 60.121 47.826 0.00 0.00 0.00 2.29
1287 1297 2.417719 GCGCTATACTGCCTGCTATTT 58.582 47.619 0.00 0.00 0.00 1.40
1315 1325 3.636679 AGCTTGCTGATAGTAGGAGTGA 58.363 45.455 0.00 0.00 0.00 3.41
1321 1331 3.553511 CGTGGAAAGCTTGCTGATAGTAG 59.446 47.826 3.95 0.00 0.00 2.57
1341 1351 1.541147 CAATGGCAAGTGGATCAACGT 59.459 47.619 0.00 0.00 0.00 3.99
1344 1354 6.795144 ATTATTCAATGGCAAGTGGATCAA 57.205 33.333 0.00 0.00 0.00 2.57
1371 1381 9.686683 ATAGGAACATAGCAACTTAAAGAACAT 57.313 29.630 0.00 0.00 0.00 2.71
1372 1382 9.162764 GATAGGAACATAGCAACTTAAAGAACA 57.837 33.333 0.00 0.00 0.00 3.18
1373 1383 9.384764 AGATAGGAACATAGCAACTTAAAGAAC 57.615 33.333 0.00 0.00 0.00 3.01
1400 1410 9.391006 CCAAACTTCCTGCAATAAGTTATACTA 57.609 33.333 20.48 0.00 43.35 1.82
1401 1411 8.107095 TCCAAACTTCCTGCAATAAGTTATACT 58.893 33.333 20.48 7.67 43.35 2.12
1402 1412 8.276252 TCCAAACTTCCTGCAATAAGTTATAC 57.724 34.615 20.48 0.00 43.35 1.47
1405 1415 6.539173 TCTCCAAACTTCCTGCAATAAGTTA 58.461 36.000 20.48 9.25 43.35 2.24
1407 1417 4.985538 TCTCCAAACTTCCTGCAATAAGT 58.014 39.130 7.38 7.38 37.54 2.24
1414 1424 4.000988 TCGTAATTCTCCAAACTTCCTGC 58.999 43.478 0.00 0.00 0.00 4.85
1415 1425 6.743575 ATTCGTAATTCTCCAAACTTCCTG 57.256 37.500 0.00 0.00 0.00 3.86
1423 1433 6.964370 CGCAAACATAATTCGTAATTCTCCAA 59.036 34.615 0.00 0.00 32.38 3.53
1425 1435 6.410914 CACGCAAACATAATTCGTAATTCTCC 59.589 38.462 0.00 0.00 32.38 3.71
1434 1444 8.057812 ACTATAGTACACGCAAACATAATTCG 57.942 34.615 2.75 0.00 0.00 3.34
1447 1457 8.997323 ACCACTAGCTAATAACTATAGTACACG 58.003 37.037 5.65 0.00 0.00 4.49
1459 1469 7.725397 TCCGAACCTAATACCACTAGCTAATAA 59.275 37.037 0.00 0.00 0.00 1.40
1462 1472 5.300286 GTCCGAACCTAATACCACTAGCTAA 59.700 44.000 0.00 0.00 0.00 3.09
1467 1477 5.702670 CGATAGTCCGAACCTAATACCACTA 59.297 44.000 0.00 0.00 0.00 2.74
1474 1484 2.035576 GTGCCGATAGTCCGAACCTAAT 59.964 50.000 0.00 0.00 0.00 1.73
1475 1485 1.406539 GTGCCGATAGTCCGAACCTAA 59.593 52.381 0.00 0.00 0.00 2.69
1476 1486 1.027357 GTGCCGATAGTCCGAACCTA 58.973 55.000 0.00 0.00 0.00 3.08
1477 1487 1.673808 GGTGCCGATAGTCCGAACCT 61.674 60.000 0.00 0.00 35.01 3.50
1478 1488 1.227176 GGTGCCGATAGTCCGAACC 60.227 63.158 0.00 0.00 0.00 3.62
1479 1489 1.227176 GGGTGCCGATAGTCCGAAC 60.227 63.158 0.00 0.00 0.00 3.95
1480 1490 2.428925 GGGGTGCCGATAGTCCGAA 61.429 63.158 0.00 0.00 0.00 4.30
1481 1491 2.836360 GGGGTGCCGATAGTCCGA 60.836 66.667 0.00 0.00 0.00 4.55
1482 1492 2.365095 GAAGGGGTGCCGATAGTCCG 62.365 65.000 0.00 0.00 0.00 4.79
1483 1493 1.335132 TGAAGGGGTGCCGATAGTCC 61.335 60.000 0.00 0.00 0.00 3.85
1484 1494 0.759346 ATGAAGGGGTGCCGATAGTC 59.241 55.000 0.00 0.00 0.00 2.59
1485 1495 0.759346 GATGAAGGGGTGCCGATAGT 59.241 55.000 0.00 0.00 0.00 2.12
1486 1496 0.758734 TGATGAAGGGGTGCCGATAG 59.241 55.000 0.00 0.00 0.00 2.08
1487 1497 1.140852 CTTGATGAAGGGGTGCCGATA 59.859 52.381 0.00 0.00 0.00 2.92
1488 1498 0.107017 CTTGATGAAGGGGTGCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
1489 1499 1.299648 CTTGATGAAGGGGTGCCGA 59.700 57.895 0.00 0.00 0.00 5.54
1490 1500 1.002134 ACTTGATGAAGGGGTGCCG 60.002 57.895 0.00 0.00 32.95 5.69
1491 1501 0.967380 CCACTTGATGAAGGGGTGCC 60.967 60.000 4.81 0.00 46.61 5.01
1492 1502 2.571548 CCACTTGATGAAGGGGTGC 58.428 57.895 4.81 0.00 46.61 5.01
1496 1506 4.301072 TTCCTAACCACTTGATGAAGGG 57.699 45.455 0.00 0.00 32.95 3.95
1497 1507 5.529060 GCTATTCCTAACCACTTGATGAAGG 59.471 44.000 0.00 0.00 32.95 3.46
1498 1508 5.235186 CGCTATTCCTAACCACTTGATGAAG 59.765 44.000 0.00 0.00 35.07 3.02
1499 1509 5.105106 TCGCTATTCCTAACCACTTGATGAA 60.105 40.000 0.00 0.00 0.00 2.57
1500 1510 4.404394 TCGCTATTCCTAACCACTTGATGA 59.596 41.667 0.00 0.00 0.00 2.92
1501 1511 4.693283 TCGCTATTCCTAACCACTTGATG 58.307 43.478 0.00 0.00 0.00 3.07
1502 1512 5.353394 TTCGCTATTCCTAACCACTTGAT 57.647 39.130 0.00 0.00 0.00 2.57
1503 1513 4.811969 TTCGCTATTCCTAACCACTTGA 57.188 40.909 0.00 0.00 0.00 3.02
1504 1514 4.935808 ACTTTCGCTATTCCTAACCACTTG 59.064 41.667 0.00 0.00 0.00 3.16
1505 1515 5.161943 ACTTTCGCTATTCCTAACCACTT 57.838 39.130 0.00 0.00 0.00 3.16
1506 1516 4.820894 ACTTTCGCTATTCCTAACCACT 57.179 40.909 0.00 0.00 0.00 4.00
1507 1517 4.694037 ACAACTTTCGCTATTCCTAACCAC 59.306 41.667 0.00 0.00 0.00 4.16
1508 1518 4.901868 ACAACTTTCGCTATTCCTAACCA 58.098 39.130 0.00 0.00 0.00 3.67
1509 1519 5.628134 CAACAACTTTCGCTATTCCTAACC 58.372 41.667 0.00 0.00 0.00 2.85
1510 1520 5.086727 GCAACAACTTTCGCTATTCCTAAC 58.913 41.667 0.00 0.00 0.00 2.34
1511 1521 5.001232 AGCAACAACTTTCGCTATTCCTAA 58.999 37.500 0.00 0.00 31.60 2.69
1512 1522 4.575885 AGCAACAACTTTCGCTATTCCTA 58.424 39.130 0.00 0.00 31.60 2.94
1513 1523 3.412386 AGCAACAACTTTCGCTATTCCT 58.588 40.909 0.00 0.00 31.60 3.36
1514 1524 3.831715 AGCAACAACTTTCGCTATTCC 57.168 42.857 0.00 0.00 31.60 3.01
1515 1525 6.165659 TCTTAGCAACAACTTTCGCTATTC 57.834 37.500 0.00 0.00 36.87 1.75
1516 1526 6.403636 CCATCTTAGCAACAACTTTCGCTATT 60.404 38.462 0.00 0.00 36.87 1.73
1517 1527 5.065218 CCATCTTAGCAACAACTTTCGCTAT 59.935 40.000 0.00 0.00 36.87 2.97
1518 1528 4.391830 CCATCTTAGCAACAACTTTCGCTA 59.608 41.667 0.00 0.00 35.93 4.26
1519 1529 3.189287 CCATCTTAGCAACAACTTTCGCT 59.811 43.478 0.00 0.00 38.51 4.93
1520 1530 3.058224 ACCATCTTAGCAACAACTTTCGC 60.058 43.478 0.00 0.00 0.00 4.70
1521 1531 4.466828 CACCATCTTAGCAACAACTTTCG 58.533 43.478 0.00 0.00 0.00 3.46
1522 1532 4.798574 CCACCATCTTAGCAACAACTTTC 58.201 43.478 0.00 0.00 0.00 2.62
1523 1533 3.005791 GCCACCATCTTAGCAACAACTTT 59.994 43.478 0.00 0.00 0.00 2.66
1524 1534 2.558359 GCCACCATCTTAGCAACAACTT 59.442 45.455 0.00 0.00 0.00 2.66
1525 1535 2.162681 GCCACCATCTTAGCAACAACT 58.837 47.619 0.00 0.00 0.00 3.16
1526 1536 2.162681 AGCCACCATCTTAGCAACAAC 58.837 47.619 0.00 0.00 0.00 3.32
1527 1537 2.584835 AGCCACCATCTTAGCAACAA 57.415 45.000 0.00 0.00 0.00 2.83
1528 1538 2.557924 CAAAGCCACCATCTTAGCAACA 59.442 45.455 0.00 0.00 0.00 3.33
1529 1539 2.094545 CCAAAGCCACCATCTTAGCAAC 60.095 50.000 0.00 0.00 0.00 4.17
1530 1540 2.170166 CCAAAGCCACCATCTTAGCAA 58.830 47.619 0.00 0.00 0.00 3.91
1531 1541 1.354031 TCCAAAGCCACCATCTTAGCA 59.646 47.619 0.00 0.00 0.00 3.49
1532 1542 1.745653 GTCCAAAGCCACCATCTTAGC 59.254 52.381 0.00 0.00 0.00 3.09
1533 1543 3.071874 TGTCCAAAGCCACCATCTTAG 57.928 47.619 0.00 0.00 0.00 2.18
1534 1544 3.517296 TTGTCCAAAGCCACCATCTTA 57.483 42.857 0.00 0.00 0.00 2.10
1535 1545 2.365293 GTTTGTCCAAAGCCACCATCTT 59.635 45.455 0.00 0.00 0.00 2.40
1536 1546 1.963515 GTTTGTCCAAAGCCACCATCT 59.036 47.619 0.00 0.00 0.00 2.90
1537 1547 1.963515 AGTTTGTCCAAAGCCACCATC 59.036 47.619 0.00 0.00 0.00 3.51
1538 1548 1.688197 CAGTTTGTCCAAAGCCACCAT 59.312 47.619 0.00 0.00 0.00 3.55
1539 1549 1.110442 CAGTTTGTCCAAAGCCACCA 58.890 50.000 0.00 0.00 0.00 4.17
1540 1550 1.398692 TCAGTTTGTCCAAAGCCACC 58.601 50.000 0.00 0.00 0.00 4.61
1541 1551 2.362077 ACATCAGTTTGTCCAAAGCCAC 59.638 45.455 0.00 0.00 0.00 5.01
1542 1552 2.665165 ACATCAGTTTGTCCAAAGCCA 58.335 42.857 0.00 0.00 0.00 4.75
1543 1553 3.821033 AGTACATCAGTTTGTCCAAAGCC 59.179 43.478 0.00 0.00 0.00 4.35
1544 1554 5.701290 AGTAGTACATCAGTTTGTCCAAAGC 59.299 40.000 2.52 0.00 0.00 3.51
1545 1555 7.730364 AAGTAGTACATCAGTTTGTCCAAAG 57.270 36.000 2.52 0.00 0.00 2.77
1546 1556 7.554835 ACAAAGTAGTACATCAGTTTGTCCAAA 59.445 33.333 16.30 0.00 42.00 3.28
1547 1557 7.051623 ACAAAGTAGTACATCAGTTTGTCCAA 58.948 34.615 16.30 0.00 42.00 3.53
1548 1558 6.588204 ACAAAGTAGTACATCAGTTTGTCCA 58.412 36.000 16.30 0.00 42.00 4.02
1549 1559 8.597662 TTACAAAGTAGTACATCAGTTTGTCC 57.402 34.615 21.53 0.00 43.67 4.02
1550 1560 8.709646 CCTTACAAAGTAGTACATCAGTTTGTC 58.290 37.037 21.53 0.00 43.67 3.18
1551 1561 8.208903 ACCTTACAAAGTAGTACATCAGTTTGT 58.791 33.333 21.57 21.57 45.55 2.83
1552 1562 8.603242 ACCTTACAAAGTAGTACATCAGTTTG 57.397 34.615 15.41 15.41 39.76 2.93
1553 1563 8.648693 AGACCTTACAAAGTAGTACATCAGTTT 58.351 33.333 2.52 0.00 0.00 2.66
1554 1564 8.191534 AGACCTTACAAAGTAGTACATCAGTT 57.808 34.615 2.52 0.00 0.00 3.16
1555 1565 7.778185 AGACCTTACAAAGTAGTACATCAGT 57.222 36.000 2.52 0.00 0.00 3.41
1556 1566 8.926710 CAAAGACCTTACAAAGTAGTACATCAG 58.073 37.037 2.52 0.00 0.00 2.90
1557 1567 8.426489 ACAAAGACCTTACAAAGTAGTACATCA 58.574 33.333 2.52 0.00 0.00 3.07
1558 1568 8.709646 CACAAAGACCTTACAAAGTAGTACATC 58.290 37.037 2.52 0.00 0.00 3.06
1559 1569 8.426489 TCACAAAGACCTTACAAAGTAGTACAT 58.574 33.333 2.52 0.00 0.00 2.29
1560 1570 7.784037 TCACAAAGACCTTACAAAGTAGTACA 58.216 34.615 2.52 0.00 0.00 2.90
1561 1571 8.652810 TTCACAAAGACCTTACAAAGTAGTAC 57.347 34.615 0.00 0.00 0.00 2.73
1563 1573 9.841295 TTATTCACAAAGACCTTACAAAGTAGT 57.159 29.630 0.00 0.00 0.00 2.73
1587 1597 9.558648 CGATGCATGCAGCTATTTTATTAATTA 57.441 29.630 31.04 0.00 45.94 1.40
1588 1598 7.062605 GCGATGCATGCAGCTATTTTATTAATT 59.937 33.333 31.04 6.69 45.94 1.40
1589 1599 6.529125 GCGATGCATGCAGCTATTTTATTAAT 59.471 34.615 31.04 7.38 45.94 1.40
1590 1600 5.858049 GCGATGCATGCAGCTATTTTATTAA 59.142 36.000 31.04 0.38 45.94 1.40
1591 1601 5.393124 GCGATGCATGCAGCTATTTTATTA 58.607 37.500 31.04 0.86 45.94 0.98
1592 1602 4.232221 GCGATGCATGCAGCTATTTTATT 58.768 39.130 31.04 8.62 45.94 1.40
1593 1603 3.366679 GGCGATGCATGCAGCTATTTTAT 60.367 43.478 31.04 9.41 45.94 1.40
1594 1604 2.030893 GGCGATGCATGCAGCTATTTTA 60.031 45.455 31.04 2.45 45.94 1.52
1595 1605 1.269413 GGCGATGCATGCAGCTATTTT 60.269 47.619 31.04 10.99 45.94 1.82
1596 1606 0.313043 GGCGATGCATGCAGCTATTT 59.687 50.000 31.04 11.78 45.94 1.40
1597 1607 0.536687 AGGCGATGCATGCAGCTATT 60.537 50.000 31.04 12.57 45.94 1.73
1598 1608 0.322648 TAGGCGATGCATGCAGCTAT 59.677 50.000 31.04 19.34 45.94 2.97
1599 1609 0.320160 CTAGGCGATGCATGCAGCTA 60.320 55.000 31.04 17.14 45.94 3.32
1600 1610 1.597302 CTAGGCGATGCATGCAGCT 60.597 57.895 31.04 16.93 45.94 4.24
1601 1611 0.954449 ATCTAGGCGATGCATGCAGC 60.954 55.000 25.69 25.69 45.96 5.25
1602 1612 0.796927 CATCTAGGCGATGCATGCAG 59.203 55.000 26.69 14.50 42.75 4.41
1603 1613 2.922779 CATCTAGGCGATGCATGCA 58.077 52.632 25.04 25.04 42.75 3.96
1610 1620 1.825281 GCCCTCTGCATCTAGGCGAT 61.825 60.000 4.71 0.00 40.77 4.58
1611 1621 2.502492 GCCCTCTGCATCTAGGCGA 61.502 63.158 4.71 0.00 40.77 5.54
1612 1622 2.030262 GCCCTCTGCATCTAGGCG 59.970 66.667 4.71 1.00 40.77 5.52
1613 1623 2.030262 CGCCCTCTGCATCTAGGC 59.970 66.667 7.03 7.03 41.33 3.93
1614 1624 2.739784 CCGCCCTCTGCATCTAGG 59.260 66.667 3.46 3.46 41.33 3.02
1615 1625 0.827925 TACCCGCCCTCTGCATCTAG 60.828 60.000 0.00 0.00 41.33 2.43
1616 1626 0.178932 ATACCCGCCCTCTGCATCTA 60.179 55.000 0.00 0.00 41.33 1.98
1617 1627 0.178932 TATACCCGCCCTCTGCATCT 60.179 55.000 0.00 0.00 41.33 2.90
1618 1628 0.685097 TTATACCCGCCCTCTGCATC 59.315 55.000 0.00 0.00 41.33 3.91
1619 1629 1.279271 GATTATACCCGCCCTCTGCAT 59.721 52.381 0.00 0.00 41.33 3.96
1620 1630 0.685097 GATTATACCCGCCCTCTGCA 59.315 55.000 0.00 0.00 41.33 4.41
1621 1631 0.036294 GGATTATACCCGCCCTCTGC 60.036 60.000 0.00 0.00 0.00 4.26
1622 1632 1.550976 GAGGATTATACCCGCCCTCTG 59.449 57.143 0.00 0.00 40.07 3.35
1623 1633 1.552719 GGAGGATTATACCCGCCCTCT 60.553 57.143 0.00 0.00 42.21 3.69
1624 1634 0.903236 GGAGGATTATACCCGCCCTC 59.097 60.000 0.00 0.00 41.92 4.30
1625 1635 0.492276 AGGAGGATTATACCCGCCCT 59.508 55.000 8.82 5.83 43.63 5.19
1626 1636 1.359168 AAGGAGGATTATACCCGCCC 58.641 55.000 8.82 4.09 43.63 6.13
1627 1637 3.503800 AAAAGGAGGATTATACCCGCC 57.496 47.619 5.33 5.33 43.02 6.13
1628 1638 4.715713 AGAAAAAGGAGGATTATACCCGC 58.284 43.478 0.00 0.00 0.00 6.13
1629 1639 8.741603 TTTTAGAAAAAGGAGGATTATACCCG 57.258 34.615 0.00 0.00 0.00 5.28
1659 1669 9.984190 AGAATAAGTTAACCACTAGCTAATAGC 57.016 33.333 3.66 3.66 36.58 2.97
1669 1679 9.914834 TGCCATATAAAGAATAAGTTAACCACT 57.085 29.630 0.88 0.00 37.30 4.00
1683 1693 9.695526 GCAACATTTTGATATGCCATATAAAGA 57.304 29.630 0.00 0.00 34.24 2.52
1684 1694 9.478768 TGCAACATTTTGATATGCCATATAAAG 57.521 29.630 0.00 0.00 36.20 1.85
1685 1695 9.828039 TTGCAACATTTTGATATGCCATATAAA 57.172 25.926 0.00 0.00 36.20 1.40
1686 1696 9.828039 TTTGCAACATTTTGATATGCCATATAA 57.172 25.926 0.00 0.00 36.20 0.98
1687 1697 9.828039 TTTTGCAACATTTTGATATGCCATATA 57.172 25.926 0.00 0.00 36.20 0.86
1688 1698 8.734218 TTTTGCAACATTTTGATATGCCATAT 57.266 26.923 0.00 0.00 36.20 1.78
1689 1699 8.613482 CATTTTGCAACATTTTGATATGCCATA 58.387 29.630 0.00 0.00 36.20 2.74
1690 1700 7.121463 ACATTTTGCAACATTTTGATATGCCAT 59.879 29.630 0.00 0.00 36.20 4.40
1691 1701 6.430308 ACATTTTGCAACATTTTGATATGCCA 59.570 30.769 0.00 0.00 36.20 4.92
1692 1702 6.844254 ACATTTTGCAACATTTTGATATGCC 58.156 32.000 0.00 0.00 36.20 4.40
1693 1703 9.823098 TTAACATTTTGCAACATTTTGATATGC 57.177 25.926 0.00 0.00 34.24 3.14
1698 1708 9.499585 CAATGTTAACATTTTGCAACATTTTGA 57.500 25.926 27.33 0.00 43.48 2.69
1699 1709 8.260550 GCAATGTTAACATTTTGCAACATTTTG 58.739 29.630 29.19 18.20 43.48 2.44
1700 1710 7.165483 CGCAATGTTAACATTTTGCAACATTTT 59.835 29.630 31.23 10.69 43.48 1.82
1701 1711 6.632035 CGCAATGTTAACATTTTGCAACATTT 59.368 30.769 31.23 10.86 43.48 2.32
1702 1712 6.134730 CGCAATGTTAACATTTTGCAACATT 58.865 32.000 31.23 12.09 43.48 2.71
1703 1713 5.236047 ACGCAATGTTAACATTTTGCAACAT 59.764 32.000 31.23 18.46 43.48 2.71
1704 1714 4.568359 ACGCAATGTTAACATTTTGCAACA 59.432 33.333 31.23 5.47 43.48 3.33
1705 1715 4.897362 CACGCAATGTTAACATTTTGCAAC 59.103 37.500 31.23 17.60 43.48 4.17
1706 1716 4.568359 ACACGCAATGTTAACATTTTGCAA 59.432 33.333 31.23 0.00 43.48 4.08
1707 1717 4.115516 ACACGCAATGTTAACATTTTGCA 58.884 34.783 31.23 5.21 43.48 4.08
1708 1718 4.707210 ACACGCAATGTTAACATTTTGC 57.293 36.364 27.33 26.79 43.48 3.68
1709 1719 6.416455 AGTGTACACGCAATGTTAACATTTTG 59.584 34.615 27.33 24.09 43.19 2.44
1710 1720 6.500041 AGTGTACACGCAATGTTAACATTTT 58.500 32.000 27.33 14.18 43.19 1.82
1711 1721 6.067263 AGTGTACACGCAATGTTAACATTT 57.933 33.333 27.33 16.83 43.19 2.32
1712 1722 5.682943 AGTGTACACGCAATGTTAACATT 57.317 34.783 24.88 24.88 43.19 2.71
1713 1723 6.978343 ATAGTGTACACGCAATGTTAACAT 57.022 33.333 19.93 15.47 43.19 2.71
1714 1724 7.886405 TTATAGTGTACACGCAATGTTAACA 57.114 32.000 19.93 11.41 43.19 2.41
1717 1727 9.033481 GGTATTTATAGTGTACACGCAATGTTA 57.967 33.333 19.93 5.89 43.19 2.41
1718 1728 7.549842 TGGTATTTATAGTGTACACGCAATGTT 59.450 33.333 19.93 3.70 43.19 2.71
1719 1729 7.042950 TGGTATTTATAGTGTACACGCAATGT 58.957 34.615 19.93 9.29 46.06 2.71
1720 1730 7.471657 TGGTATTTATAGTGTACACGCAATG 57.528 36.000 19.93 0.00 36.20 2.82
1721 1731 8.671384 AATGGTATTTATAGTGTACACGCAAT 57.329 30.769 19.93 16.23 36.20 3.56
1722 1732 8.391859 CAAATGGTATTTATAGTGTACACGCAA 58.608 33.333 19.93 12.19 36.20 4.85
1723 1733 7.549842 ACAAATGGTATTTATAGTGTACACGCA 59.450 33.333 19.93 12.55 36.20 5.24
1724 1734 7.849026 CACAAATGGTATTTATAGTGTACACGC 59.151 37.037 19.93 0.00 36.20 5.34
1725 1735 8.875803 ACACAAATGGTATTTATAGTGTACACG 58.124 33.333 19.93 2.92 37.22 4.49
1735 1745 9.677567 GCGATGATAAACACAAATGGTATTTAT 57.322 29.630 0.00 0.00 0.00 1.40
1736 1746 8.132362 GGCGATGATAAACACAAATGGTATTTA 58.868 33.333 0.00 0.00 0.00 1.40
1737 1747 6.978080 GGCGATGATAAACACAAATGGTATTT 59.022 34.615 0.00 0.00 0.00 1.40
1738 1748 6.096141 TGGCGATGATAAACACAAATGGTATT 59.904 34.615 0.00 0.00 0.00 1.89
1739 1749 5.592282 TGGCGATGATAAACACAAATGGTAT 59.408 36.000 0.00 0.00 0.00 2.73
1740 1750 4.944317 TGGCGATGATAAACACAAATGGTA 59.056 37.500 0.00 0.00 0.00 3.25
1741 1751 3.761218 TGGCGATGATAAACACAAATGGT 59.239 39.130 0.00 0.00 0.00 3.55
1742 1752 4.353737 CTGGCGATGATAAACACAAATGG 58.646 43.478 0.00 0.00 0.00 3.16
1743 1753 4.096231 TCCTGGCGATGATAAACACAAATG 59.904 41.667 0.00 0.00 0.00 2.32
1744 1754 4.269183 TCCTGGCGATGATAAACACAAAT 58.731 39.130 0.00 0.00 0.00 2.32
1745 1755 3.680490 TCCTGGCGATGATAAACACAAA 58.320 40.909 0.00 0.00 0.00 2.83
1746 1756 3.342377 TCCTGGCGATGATAAACACAA 57.658 42.857 0.00 0.00 0.00 3.33
1747 1757 3.558931 ATCCTGGCGATGATAAACACA 57.441 42.857 0.00 0.00 0.00 3.72
1757 1767 2.623889 GTGTACTACTCATCCTGGCGAT 59.376 50.000 0.00 0.00 0.00 4.58
1758 1768 2.022195 GTGTACTACTCATCCTGGCGA 58.978 52.381 0.00 0.00 0.00 5.54
1759 1769 1.067212 GGTGTACTACTCATCCTGGCG 59.933 57.143 0.00 0.00 0.00 5.69
1760 1770 1.067212 CGGTGTACTACTCATCCTGGC 59.933 57.143 0.00 0.00 0.00 4.85
1761 1771 2.376109 ACGGTGTACTACTCATCCTGG 58.624 52.381 0.00 0.00 0.00 4.45
1762 1772 4.397103 TGTTACGGTGTACTACTCATCCTG 59.603 45.833 0.00 0.00 0.00 3.86
1763 1773 4.397417 GTGTTACGGTGTACTACTCATCCT 59.603 45.833 0.00 0.00 0.00 3.24
1764 1774 4.439289 GGTGTTACGGTGTACTACTCATCC 60.439 50.000 0.00 0.00 0.00 3.51
1765 1775 4.439289 GGGTGTTACGGTGTACTACTCATC 60.439 50.000 0.00 0.00 0.00 2.92
1766 1776 3.445096 GGGTGTTACGGTGTACTACTCAT 59.555 47.826 0.00 0.00 0.00 2.90
1767 1777 2.819608 GGGTGTTACGGTGTACTACTCA 59.180 50.000 0.00 0.00 0.00 3.41
1768 1778 2.164422 GGGGTGTTACGGTGTACTACTC 59.836 54.545 0.00 0.00 0.00 2.59
1769 1779 2.171003 GGGGTGTTACGGTGTACTACT 58.829 52.381 0.00 0.00 0.00 2.57
1770 1780 1.135402 CGGGGTGTTACGGTGTACTAC 60.135 57.143 0.00 0.00 0.00 2.73
1771 1781 1.173043 CGGGGTGTTACGGTGTACTA 58.827 55.000 0.00 0.00 0.00 1.82
1772 1782 0.539438 TCGGGGTGTTACGGTGTACT 60.539 55.000 0.00 0.00 0.00 2.73
1773 1783 0.109132 CTCGGGGTGTTACGGTGTAC 60.109 60.000 0.00 0.00 0.00 2.90
1774 1784 0.251121 TCTCGGGGTGTTACGGTGTA 60.251 55.000 0.00 0.00 0.00 2.90
1775 1785 1.114722 TTCTCGGGGTGTTACGGTGT 61.115 55.000 0.00 0.00 0.00 4.16
1776 1786 0.248289 ATTCTCGGGGTGTTACGGTG 59.752 55.000 0.00 0.00 0.00 4.94
1777 1787 0.533951 GATTCTCGGGGTGTTACGGT 59.466 55.000 0.00 0.00 0.00 4.83
1778 1788 0.533491 TGATTCTCGGGGTGTTACGG 59.467 55.000 0.00 0.00 0.00 4.02
1779 1789 2.201732 CATGATTCTCGGGGTGTTACG 58.798 52.381 0.00 0.00 0.00 3.18
2156 2167 0.998928 TGGGCTGCCAAGAGGATTTA 59.001 50.000 22.05 0.00 36.89 1.40
2234 2246 2.674220 CCAGGAGGGTCAGAAGGGC 61.674 68.421 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.