Multiple sequence alignment - TraesCS2D01G439000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G439000 chr2D 100.000 2914 0 0 1 2914 548254191 548257104 0.000000e+00 5382.0
1 TraesCS2D01G439000 chr2D 95.484 620 27 1 3 621 617082225 617082844 0.000000e+00 989.0
2 TraesCS2D01G439000 chr2D 83.663 606 92 5 1220 1824 549984088 549983489 5.450000e-157 564.0
3 TraesCS2D01G439000 chr2D 82.964 587 85 7 1239 1824 549510040 549509468 1.550000e-142 516.0
4 TraesCS2D01G439000 chr2D 87.361 451 19 12 2443 2870 548256194 548256629 1.570000e-132 483.0
5 TraesCS2D01G439000 chr2D 87.305 449 23 9 2004 2439 548256633 548257060 1.570000e-132 483.0
6 TraesCS2D01G439000 chr2D 76.826 876 144 29 1239 2090 548265535 548266375 3.450000e-119 438.0
7 TraesCS2D01G439000 chr2D 93.162 117 8 0 1086 1202 548265350 548265466 3.860000e-39 172.0
8 TraesCS2D01G439000 chr2B 91.197 1454 76 15 1014 2439 655212627 655214056 0.000000e+00 1929.0
9 TraesCS2D01G439000 chr2B 90.112 445 24 5 2443 2872 655213619 655214058 7.050000e-156 560.0
10 TraesCS2D01G439000 chr2B 77.312 573 113 12 1255 1824 655896076 655895518 3.620000e-84 322.0
11 TraesCS2D01G439000 chr2B 91.667 228 11 2 621 841 655205198 655205424 2.820000e-80 309.0
12 TraesCS2D01G439000 chr2B 96.947 131 2 2 893 1023 655210501 655210629 4.890000e-53 219.0
13 TraesCS2D01G439000 chr2B 97.143 35 1 0 2880 2914 655214086 655214120 3.140000e-05 60.2
14 TraesCS2D01G439000 chr1B 95.680 625 25 2 3 626 269218878 269218255 0.000000e+00 1003.0
15 TraesCS2D01G439000 chr6B 95.520 625 27 1 3 626 21063430 21064054 0.000000e+00 998.0
16 TraesCS2D01G439000 chr3D 95.659 622 25 2 3 622 559108866 559109487 0.000000e+00 998.0
17 TraesCS2D01G439000 chr4D 95.645 620 25 2 3 621 6227246 6226628 0.000000e+00 994.0
18 TraesCS2D01G439000 chr4D 95.223 628 24 4 3 626 8275040 8274415 0.000000e+00 989.0
19 TraesCS2D01G439000 chr7A 95.338 622 26 3 3 622 648845366 648845986 0.000000e+00 985.0
20 TraesCS2D01G439000 chr4A 95.338 622 26 3 3 622 21229144 21229764 0.000000e+00 985.0
21 TraesCS2D01G439000 chr1A 95.192 624 29 1 3 625 40891706 40891083 0.000000e+00 985.0
22 TraesCS2D01G439000 chrUn 86.724 934 56 23 827 1737 307426702 307427590 0.000000e+00 976.0
23 TraesCS2D01G439000 chrUn 84.419 706 66 21 1762 2434 307427582 307428276 0.000000e+00 654.0
24 TraesCS2D01G439000 chrUn 85.638 376 30 12 2512 2872 307427917 307428283 9.860000e-100 374.0
25 TraesCS2D01G439000 chrUn 89.316 234 12 5 621 842 307426455 307426687 6.150000e-72 281.0
26 TraesCS2D01G439000 chr2A 86.724 934 56 23 827 1737 690913934 690913046 0.000000e+00 976.0
27 TraesCS2D01G439000 chr2A 84.495 703 65 21 1765 2434 690913051 690912360 0.000000e+00 654.0
28 TraesCS2D01G439000 chr2A 85.638 376 30 12 2512 2872 690912719 690912353 9.860000e-100 374.0
29 TraesCS2D01G439000 chr2A 89.316 234 12 5 621 842 690914181 690913949 6.150000e-72 281.0
30 TraesCS2D01G439000 chr6A 88.856 673 43 13 1780 2439 146500172 146499519 0.000000e+00 798.0
31 TraesCS2D01G439000 chr6A 89.013 446 24 8 2443 2874 146499949 146499515 1.990000e-146 529.0
32 TraesCS2D01G439000 chr6A 100.000 35 0 0 2880 2914 146499489 146499455 6.740000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G439000 chr2D 548254191 548257104 2913 False 2116.000000 5382 91.555333 1 2914 3 chr2D.!!$F2 2913
1 TraesCS2D01G439000 chr2D 617082225 617082844 619 False 989.000000 989 95.484000 3 621 1 chr2D.!!$F1 618
2 TraesCS2D01G439000 chr2D 549983489 549984088 599 True 564.000000 564 83.663000 1220 1824 1 chr2D.!!$R2 604
3 TraesCS2D01G439000 chr2D 549509468 549510040 572 True 516.000000 516 82.964000 1239 1824 1 chr2D.!!$R1 585
4 TraesCS2D01G439000 chr2D 548265350 548266375 1025 False 305.000000 438 84.994000 1086 2090 2 chr2D.!!$F3 1004
5 TraesCS2D01G439000 chr2B 655210501 655214120 3619 False 692.050000 1929 93.849750 893 2914 4 chr2B.!!$F2 2021
6 TraesCS2D01G439000 chr2B 655895518 655896076 558 True 322.000000 322 77.312000 1255 1824 1 chr2B.!!$R1 569
7 TraesCS2D01G439000 chr1B 269218255 269218878 623 True 1003.000000 1003 95.680000 3 626 1 chr1B.!!$R1 623
8 TraesCS2D01G439000 chr6B 21063430 21064054 624 False 998.000000 998 95.520000 3 626 1 chr6B.!!$F1 623
9 TraesCS2D01G439000 chr3D 559108866 559109487 621 False 998.000000 998 95.659000 3 622 1 chr3D.!!$F1 619
10 TraesCS2D01G439000 chr4D 6226628 6227246 618 True 994.000000 994 95.645000 3 621 1 chr4D.!!$R1 618
11 TraesCS2D01G439000 chr4D 8274415 8275040 625 True 989.000000 989 95.223000 3 626 1 chr4D.!!$R2 623
12 TraesCS2D01G439000 chr7A 648845366 648845986 620 False 985.000000 985 95.338000 3 622 1 chr7A.!!$F1 619
13 TraesCS2D01G439000 chr4A 21229144 21229764 620 False 985.000000 985 95.338000 3 622 1 chr4A.!!$F1 619
14 TraesCS2D01G439000 chr1A 40891083 40891706 623 True 985.000000 985 95.192000 3 625 1 chr1A.!!$R1 622
15 TraesCS2D01G439000 chrUn 307426455 307428283 1828 False 571.250000 976 86.524250 621 2872 4 chrUn.!!$F1 2251
16 TraesCS2D01G439000 chr2A 690912353 690914181 1828 True 571.250000 976 86.543250 621 2872 4 chr2A.!!$R1 2251
17 TraesCS2D01G439000 chr6A 146499455 146500172 717 True 464.266667 798 92.623000 1780 2914 3 chr6A.!!$R1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 674 0.750911 CTGGAATGAGCTGCCCCTTC 60.751 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 4794 0.172803 CGTAGGCAGGTCGTAGCTTT 59.827 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 132 5.122519 AGGGTTCCGTTTTTAGTCGTTTTA 58.877 37.500 0.00 0.00 0.00 1.52
151 155 4.846779 TCAATCTTGTTAGGGTTTGTGC 57.153 40.909 0.00 0.00 0.00 4.57
160 164 3.737702 GGGTTTGTGCCCTACTCAA 57.262 52.632 0.00 0.00 45.22 3.02
366 371 7.869429 GGATCCTTCCGATCTACGTTATTTTTA 59.131 37.037 3.84 0.00 45.90 1.52
380 385 2.622546 TTTTTAATCAGCGGCGGTTC 57.377 45.000 9.73 0.00 0.00 3.62
408 413 2.001269 GGTGCTGGTCCTATGGGGT 61.001 63.158 0.00 0.00 36.25 4.95
463 468 4.643387 GTTGTGCCTGGCTCCGGT 62.643 66.667 21.03 0.00 0.00 5.28
481 486 2.427753 GATGGAGGGGCGATGACC 59.572 66.667 0.00 0.00 0.00 4.02
590 595 5.503031 CGTTGTACTGCCATGATTGAAGATC 60.503 44.000 0.00 0.00 0.00 2.75
646 651 4.377897 ACACGGGAGAAGTAACAAAAGAG 58.622 43.478 0.00 0.00 0.00 2.85
669 674 0.750911 CTGGAATGAGCTGCCCCTTC 60.751 60.000 0.00 0.00 0.00 3.46
670 675 1.210204 TGGAATGAGCTGCCCCTTCT 61.210 55.000 0.00 0.00 0.00 2.85
682 687 3.580022 CTGCCCCTTCTTCCAATTTTTCT 59.420 43.478 0.00 0.00 0.00 2.52
685 690 5.604650 TGCCCCTTCTTCCAATTTTTCTTTA 59.395 36.000 0.00 0.00 0.00 1.85
686 691 6.100424 TGCCCCTTCTTCCAATTTTTCTTTAA 59.900 34.615 0.00 0.00 0.00 1.52
691 696 5.534407 TCTTCCAATTTTTCTTTAACGGGC 58.466 37.500 0.00 0.00 0.00 6.13
706 711 6.490566 TTAACGGGCTTCTTCAGTTTTATC 57.509 37.500 0.00 0.00 0.00 1.75
716 721 8.111224 GCTTCTTCAGTTTTATCTCGTAATCAC 58.889 37.037 0.00 0.00 0.00 3.06
754 762 5.289510 AGAAACCATATAGTGAGGGGACTT 58.710 41.667 0.00 0.00 44.43 3.01
810 827 4.576053 AGGCATTTTGGAAAAAGCAAAGTC 59.424 37.500 12.58 0.00 42.52 3.01
823 840 8.614994 AAAAAGCAAAGTCGAATAATAATCGG 57.385 30.769 0.00 0.00 40.59 4.18
825 842 7.548196 AAGCAAAGTCGAATAATAATCGGAA 57.452 32.000 0.00 0.00 40.59 4.30
895 953 6.183360 ACAATCAAAAAGTGGACCAAGCAATA 60.183 34.615 0.00 0.00 0.00 1.90
896 954 5.195001 TCAAAAAGTGGACCAAGCAATAC 57.805 39.130 0.00 0.00 0.00 1.89
897 955 4.038642 TCAAAAAGTGGACCAAGCAATACC 59.961 41.667 0.00 0.00 0.00 2.73
1079 3147 3.846430 CTCCTCGCCGTTACCCCC 61.846 72.222 0.00 0.00 0.00 5.40
1101 3169 2.203252 CCATCCATGGCCACCTCG 60.203 66.667 8.16 0.00 41.75 4.63
1248 3349 1.217882 CGCAGTTTCTTTCACCGTCT 58.782 50.000 0.00 0.00 0.00 4.18
1268 3369 4.000988 TCTCTACCGTCTTTGATTTTGGC 58.999 43.478 0.00 0.00 0.00 4.52
1291 3392 0.036732 ATTGCAGGGAAGAAGACGCA 59.963 50.000 0.00 0.00 0.00 5.24
1394 3495 2.288702 GCACGAGCTGATGGAGATACAT 60.289 50.000 0.00 0.00 37.91 2.29
1501 3605 4.459973 CGACGCCGCCTATATCAG 57.540 61.111 0.00 0.00 0.00 2.90
1560 3664 2.977178 CGGAGGAGCTCAAGCAGT 59.023 61.111 17.19 0.00 45.16 4.40
1622 3726 4.242602 GGCAGGGCCTTGTACATC 57.757 61.111 17.25 0.00 46.69 3.06
1761 3868 3.495100 CCCCCAAGAGTAGGAATTGATCG 60.495 52.174 0.00 0.00 0.00 3.69
1834 3976 2.749621 GTTGCTATGTTCAGGTTCAGGG 59.250 50.000 0.00 0.00 0.00 4.45
1851 3993 5.304686 TCAGGGTGACTACTTGTTTGATT 57.695 39.130 0.00 0.00 0.00 2.57
1857 3999 8.164070 AGGGTGACTACTTGTTTGATTCTATTT 58.836 33.333 0.00 0.00 0.00 1.40
1895 4038 2.760634 TTATGGCTCGAGTGCTTCAA 57.239 45.000 15.13 0.00 0.00 2.69
1949 4092 1.592064 TTTCAGTCATCTTGTGCGCA 58.408 45.000 5.66 5.66 0.00 6.09
1975 4124 6.974932 TTGCTATGTTCTGAACTTCTGATC 57.025 37.500 20.18 5.29 0.00 2.92
2100 4258 2.391724 GAAGGAAGGTGCGGTGGACA 62.392 60.000 0.00 0.00 0.00 4.02
2182 4340 1.759445 AGCTACGACCTACCTACGAGA 59.241 52.381 0.00 0.00 0.00 4.04
2197 4355 2.767505 ACGAGATTTGGTCTTGGACAC 58.232 47.619 0.00 0.00 41.90 3.67
2253 4421 7.829211 AGAAAATCTAATTCGGGAAATCAGTGA 59.171 33.333 0.00 0.00 32.04 3.41
2415 4618 7.830099 ATGATTTTCCATCTTATTCAGGACC 57.170 36.000 0.00 0.00 0.00 4.46
2416 4619 6.973642 TGATTTTCCATCTTATTCAGGACCT 58.026 36.000 0.00 0.00 0.00 3.85
2417 4620 7.056635 TGATTTTCCATCTTATTCAGGACCTC 58.943 38.462 0.00 0.00 0.00 3.85
2418 4621 6.642733 TTTTCCATCTTATTCAGGACCTCT 57.357 37.500 0.00 0.00 0.00 3.69
2419 4622 6.642733 TTTCCATCTTATTCAGGACCTCTT 57.357 37.500 0.00 0.00 0.00 2.85
2420 4623 6.642733 TTCCATCTTATTCAGGACCTCTTT 57.357 37.500 0.00 0.00 0.00 2.52
2421 4624 6.240549 TCCATCTTATTCAGGACCTCTTTC 57.759 41.667 0.00 0.00 0.00 2.62
2422 4625 5.726308 TCCATCTTATTCAGGACCTCTTTCA 59.274 40.000 0.00 0.00 0.00 2.69
2423 4626 6.388100 TCCATCTTATTCAGGACCTCTTTCAT 59.612 38.462 0.00 0.00 0.00 2.57
2424 4627 6.485984 CCATCTTATTCAGGACCTCTTTCATG 59.514 42.308 0.00 0.00 0.00 3.07
2425 4628 6.874278 TCTTATTCAGGACCTCTTTCATGA 57.126 37.500 0.00 0.00 34.59 3.07
2426 4629 7.443302 TCTTATTCAGGACCTCTTTCATGAT 57.557 36.000 0.00 0.00 36.27 2.45
2427 4630 7.865820 TCTTATTCAGGACCTCTTTCATGATT 58.134 34.615 0.00 0.00 36.27 2.57
2428 4631 8.331740 TCTTATTCAGGACCTCTTTCATGATTT 58.668 33.333 0.00 0.00 36.27 2.17
2429 4632 8.511604 TTATTCAGGACCTCTTTCATGATTTC 57.488 34.615 0.00 0.00 36.27 2.17
2430 4633 5.503634 TCAGGACCTCTTTCATGATTTCA 57.496 39.130 0.00 0.00 31.53 2.69
2431 4634 5.879763 TCAGGACCTCTTTCATGATTTCAA 58.120 37.500 0.00 0.00 31.53 2.69
2432 4635 6.306199 TCAGGACCTCTTTCATGATTTCAAA 58.694 36.000 0.00 0.00 31.53 2.69
2433 4636 6.777091 TCAGGACCTCTTTCATGATTTCAAAA 59.223 34.615 0.00 0.00 31.53 2.44
2434 4637 7.040201 TCAGGACCTCTTTCATGATTTCAAAAG 60.040 37.037 0.00 0.00 31.53 2.27
2435 4638 6.210185 AGGACCTCTTTCATGATTTCAAAAGG 59.790 38.462 0.00 0.00 29.33 3.11
2436 4639 6.209391 GGACCTCTTTCATGATTTCAAAAGGA 59.791 38.462 4.56 0.00 29.33 3.36
2437 4640 7.093596 GGACCTCTTTCATGATTTCAAAAGGAT 60.094 37.037 4.56 0.00 29.33 3.24
2438 4641 8.884124 ACCTCTTTCATGATTTCAAAAGGATA 57.116 30.769 4.56 0.00 29.33 2.59
2439 4642 9.484806 ACCTCTTTCATGATTTCAAAAGGATAT 57.515 29.630 4.56 0.00 29.33 1.63
2440 4643 9.745880 CCTCTTTCATGATTTCAAAAGGATATG 57.254 33.333 0.00 0.00 29.33 1.78
2460 4663 9.938280 GGATATGTAACTATATGTAACTTGGCA 57.062 33.333 0.00 0.00 0.00 4.92
2465 4668 9.489084 TGTAACTATATGTAACTTGGCATGATC 57.511 33.333 7.45 0.00 0.00 2.92
2466 4669 9.489084 GTAACTATATGTAACTTGGCATGATCA 57.511 33.333 7.45 0.00 0.00 2.92
2467 4670 8.613060 AACTATATGTAACTTGGCATGATCAG 57.387 34.615 7.45 0.00 0.00 2.90
2468 4671 7.739825 ACTATATGTAACTTGGCATGATCAGT 58.260 34.615 7.45 0.00 0.00 3.41
2469 4672 6.872628 ATATGTAACTTGGCATGATCAGTG 57.127 37.500 7.45 1.26 0.00 3.66
2470 4673 4.284829 TGTAACTTGGCATGATCAGTGA 57.715 40.909 7.45 0.00 0.00 3.41
2471 4674 4.847198 TGTAACTTGGCATGATCAGTGAT 58.153 39.130 4.98 4.98 0.00 3.06
2472 4675 4.637091 TGTAACTTGGCATGATCAGTGATG 59.363 41.667 11.20 0.00 0.00 3.07
2473 4676 2.022195 ACTTGGCATGATCAGTGATGC 58.978 47.619 11.20 9.59 43.22 3.91
2474 4677 2.021457 CTTGGCATGATCAGTGATGCA 58.979 47.619 18.15 8.86 45.37 3.96
2475 4678 1.675552 TGGCATGATCAGTGATGCAG 58.324 50.000 18.15 0.65 45.37 4.41
2476 4679 1.210967 TGGCATGATCAGTGATGCAGA 59.789 47.619 18.15 4.18 45.37 4.26
2477 4680 2.158667 TGGCATGATCAGTGATGCAGAT 60.159 45.455 18.15 0.00 45.37 2.90
2478 4681 3.071892 TGGCATGATCAGTGATGCAGATA 59.928 43.478 18.15 2.16 45.37 1.98
2479 4682 3.685272 GGCATGATCAGTGATGCAGATAG 59.315 47.826 18.15 2.63 45.37 2.08
2480 4683 4.562963 GGCATGATCAGTGATGCAGATAGA 60.563 45.833 18.15 0.00 45.37 1.98
2481 4684 4.995487 GCATGATCAGTGATGCAGATAGAA 59.005 41.667 11.20 0.00 43.40 2.10
2482 4685 5.107026 GCATGATCAGTGATGCAGATAGAAC 60.107 44.000 11.20 0.00 43.40 3.01
2483 4686 4.953667 TGATCAGTGATGCAGATAGAACC 58.046 43.478 11.20 0.00 0.00 3.62
2484 4687 3.827008 TCAGTGATGCAGATAGAACCC 57.173 47.619 0.00 0.00 0.00 4.11
2485 4688 2.435805 TCAGTGATGCAGATAGAACCCC 59.564 50.000 0.00 0.00 0.00 4.95
2486 4689 2.171237 CAGTGATGCAGATAGAACCCCA 59.829 50.000 0.00 0.00 0.00 4.96
2487 4690 2.846206 AGTGATGCAGATAGAACCCCAA 59.154 45.455 0.00 0.00 0.00 4.12
2488 4691 3.461085 AGTGATGCAGATAGAACCCCAAT 59.539 43.478 0.00 0.00 0.00 3.16
2489 4692 3.817647 GTGATGCAGATAGAACCCCAATC 59.182 47.826 0.00 0.00 0.00 2.67
2490 4693 3.459227 TGATGCAGATAGAACCCCAATCA 59.541 43.478 0.00 0.00 0.00 2.57
2491 4694 4.079844 TGATGCAGATAGAACCCCAATCAA 60.080 41.667 0.00 0.00 0.00 2.57
2492 4695 4.524802 TGCAGATAGAACCCCAATCAAT 57.475 40.909 0.00 0.00 0.00 2.57
2493 4696 4.464008 TGCAGATAGAACCCCAATCAATC 58.536 43.478 0.00 0.00 0.00 2.67
2494 4697 4.166725 TGCAGATAGAACCCCAATCAATCT 59.833 41.667 0.00 0.00 0.00 2.40
2495 4698 4.518211 GCAGATAGAACCCCAATCAATCTG 59.482 45.833 0.00 0.00 41.01 2.90
2496 4699 5.688500 GCAGATAGAACCCCAATCAATCTGA 60.689 44.000 12.31 0.00 40.69 3.27
2497 4700 6.359804 CAGATAGAACCCCAATCAATCTGAA 58.640 40.000 3.87 0.00 40.69 3.02
2498 4701 7.002879 CAGATAGAACCCCAATCAATCTGAAT 58.997 38.462 3.87 0.00 40.69 2.57
2499 4702 7.174599 CAGATAGAACCCCAATCAATCTGAATC 59.825 40.741 3.87 0.00 40.69 2.52
2500 4703 5.463051 AGAACCCCAATCAATCTGAATCT 57.537 39.130 0.00 0.00 0.00 2.40
2501 4704 5.835582 AGAACCCCAATCAATCTGAATCTT 58.164 37.500 0.00 0.00 0.00 2.40
2502 4705 5.890419 AGAACCCCAATCAATCTGAATCTTC 59.110 40.000 0.00 0.00 0.00 2.87
2503 4706 4.540715 ACCCCAATCAATCTGAATCTTCC 58.459 43.478 0.00 0.00 0.00 3.46
2504 4707 4.017222 ACCCCAATCAATCTGAATCTTCCA 60.017 41.667 0.00 0.00 0.00 3.53
2505 4708 5.145564 CCCCAATCAATCTGAATCTTCCAT 58.854 41.667 0.00 0.00 0.00 3.41
2506 4709 5.010719 CCCCAATCAATCTGAATCTTCCATG 59.989 44.000 0.00 0.00 0.00 3.66
2507 4710 5.010719 CCCAATCAATCTGAATCTTCCATGG 59.989 44.000 4.97 4.97 0.00 3.66
2508 4711 5.597182 CCAATCAATCTGAATCTTCCATGGT 59.403 40.000 12.58 0.00 0.00 3.55
2509 4712 6.461092 CCAATCAATCTGAATCTTCCATGGTG 60.461 42.308 12.58 6.40 0.00 4.17
2510 4713 5.440207 TCAATCTGAATCTTCCATGGTGA 57.560 39.130 12.58 11.88 0.00 4.02
2511 4714 5.434408 TCAATCTGAATCTTCCATGGTGAG 58.566 41.667 12.58 11.31 0.00 3.51
2512 4715 3.920231 TCTGAATCTTCCATGGTGAGG 57.080 47.619 12.58 0.00 0.00 3.86
2513 4716 3.453868 TCTGAATCTTCCATGGTGAGGA 58.546 45.455 12.58 0.00 0.00 3.71
2514 4717 3.845992 TCTGAATCTTCCATGGTGAGGAA 59.154 43.478 12.58 0.00 42.62 3.36
2520 4723 1.289160 TCCATGGTGAGGAAGGAAGG 58.711 55.000 12.58 0.00 30.71 3.46
2521 4724 0.995024 CCATGGTGAGGAAGGAAGGT 59.005 55.000 2.57 0.00 0.00 3.50
2522 4725 1.340405 CCATGGTGAGGAAGGAAGGTG 60.340 57.143 2.57 0.00 0.00 4.00
2523 4726 0.329596 ATGGTGAGGAAGGAAGGTGC 59.670 55.000 0.00 0.00 0.00 5.01
2524 4727 1.376037 GGTGAGGAAGGAAGGTGCG 60.376 63.158 0.00 0.00 0.00 5.34
2525 4728 1.376037 GTGAGGAAGGAAGGTGCGG 60.376 63.158 0.00 0.00 0.00 5.69
2526 4729 1.841556 TGAGGAAGGAAGGTGCGGT 60.842 57.895 0.00 0.00 0.00 5.68
2527 4730 1.376037 GAGGAAGGAAGGTGCGGTG 60.376 63.158 0.00 0.00 0.00 4.94
2528 4731 2.359975 GGAAGGAAGGTGCGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
2529 4732 2.747686 GAAGGAAGGTGCGGTGGA 59.252 61.111 0.00 0.00 0.00 4.02
2530 4733 1.671379 GAAGGAAGGTGCGGTGGAC 60.671 63.158 0.00 0.00 0.00 4.02
2531 4734 3.192103 AAGGAAGGTGCGGTGGACC 62.192 63.158 0.00 0.00 0.00 4.46
2541 4744 2.504519 GGTGGACCGTAGCCATCC 59.495 66.667 0.00 0.00 37.81 3.51
2542 4745 2.064581 GGTGGACCGTAGCCATCCT 61.065 63.158 0.00 0.00 37.81 3.24
2543 4746 1.144057 GTGGACCGTAGCCATCCTG 59.856 63.158 0.00 0.00 37.81 3.86
2544 4747 2.109181 GGACCGTAGCCATCCTGC 59.891 66.667 0.00 0.00 0.00 4.85
2545 4748 2.731571 GGACCGTAGCCATCCTGCA 61.732 63.158 0.00 0.00 0.00 4.41
2546 4749 1.521681 GACCGTAGCCATCCTGCAC 60.522 63.158 0.00 0.00 0.00 4.57
2547 4750 1.961180 GACCGTAGCCATCCTGCACT 61.961 60.000 0.00 0.00 0.00 4.40
2548 4751 1.522355 CCGTAGCCATCCTGCACTG 60.522 63.158 0.00 0.00 0.00 3.66
2549 4752 2.176273 CGTAGCCATCCTGCACTGC 61.176 63.158 0.00 0.00 0.00 4.40
2550 4753 1.222936 GTAGCCATCCTGCACTGCT 59.777 57.895 1.98 0.00 36.11 4.24
2551 4754 1.094073 GTAGCCATCCTGCACTGCTG 61.094 60.000 1.98 1.44 33.63 4.41
2552 4755 2.881539 TAGCCATCCTGCACTGCTGC 62.882 60.000 1.98 0.00 44.52 5.25
2553 4756 3.138798 CCATCCTGCACTGCTGCC 61.139 66.667 1.98 0.00 43.51 4.85
2554 4757 3.506096 CATCCTGCACTGCTGCCG 61.506 66.667 1.98 0.00 43.51 5.69
2577 4780 4.094684 CGTGTCGCTCCTTGATCC 57.905 61.111 0.00 0.00 0.00 3.36
2578 4781 1.215382 CGTGTCGCTCCTTGATCCA 59.785 57.895 0.00 0.00 0.00 3.41
2579 4782 1.078759 CGTGTCGCTCCTTGATCCAC 61.079 60.000 0.00 0.00 0.00 4.02
2580 4783 0.247736 GTGTCGCTCCTTGATCCACT 59.752 55.000 0.00 0.00 0.00 4.00
2581 4784 0.976641 TGTCGCTCCTTGATCCACTT 59.023 50.000 0.00 0.00 0.00 3.16
2582 4785 1.066858 TGTCGCTCCTTGATCCACTTC 60.067 52.381 0.00 0.00 0.00 3.01
2583 4786 1.066858 GTCGCTCCTTGATCCACTTCA 60.067 52.381 0.00 0.00 0.00 3.02
2584 4787 1.205655 TCGCTCCTTGATCCACTTCAG 59.794 52.381 0.00 0.00 0.00 3.02
2585 4788 1.066573 CGCTCCTTGATCCACTTCAGT 60.067 52.381 0.00 0.00 0.00 3.41
2586 4789 2.354259 GCTCCTTGATCCACTTCAGTG 58.646 52.381 0.00 0.00 45.23 3.66
2587 4790 2.354259 CTCCTTGATCCACTTCAGTGC 58.646 52.381 1.01 0.00 44.34 4.40
2588 4791 1.980765 TCCTTGATCCACTTCAGTGCT 59.019 47.619 1.01 0.00 44.34 4.40
2589 4792 2.027745 TCCTTGATCCACTTCAGTGCTC 60.028 50.000 1.01 1.83 44.34 4.26
2590 4793 1.998315 CTTGATCCACTTCAGTGCTCG 59.002 52.381 1.01 0.00 44.34 5.03
2591 4794 1.256812 TGATCCACTTCAGTGCTCGA 58.743 50.000 1.01 0.00 44.34 4.04
2592 4795 1.618343 TGATCCACTTCAGTGCTCGAA 59.382 47.619 1.01 0.00 44.34 3.71
2593 4796 2.037121 TGATCCACTTCAGTGCTCGAAA 59.963 45.455 1.01 0.00 44.34 3.46
2594 4797 2.154854 TCCACTTCAGTGCTCGAAAG 57.845 50.000 1.01 0.00 44.34 2.62
2604 4807 2.654939 GCTCGAAAGCTACGACCTG 58.345 57.895 11.02 4.75 45.55 4.00
2605 4808 1.414527 GCTCGAAAGCTACGACCTGC 61.415 60.000 11.02 9.91 45.55 4.85
2606 4809 0.802607 CTCGAAAGCTACGACCTGCC 60.803 60.000 11.02 0.00 35.88 4.85
2607 4810 1.215647 CGAAAGCTACGACCTGCCT 59.784 57.895 7.33 0.00 0.00 4.75
2608 4811 0.454600 CGAAAGCTACGACCTGCCTA 59.545 55.000 7.33 0.00 0.00 3.93
2609 4812 1.798079 CGAAAGCTACGACCTGCCTAC 60.798 57.143 7.33 0.00 0.00 3.18
2610 4813 0.172803 AAAGCTACGACCTGCCTACG 59.827 55.000 0.00 0.00 0.00 3.51
2611 4814 0.679002 AAGCTACGACCTGCCTACGA 60.679 55.000 0.00 0.00 0.00 3.43
2612 4815 1.096386 AGCTACGACCTGCCTACGAG 61.096 60.000 0.00 0.00 0.00 4.18
2613 4816 2.023318 CTACGACCTGCCTACGAGG 58.977 63.158 0.00 0.00 38.80 4.63
2615 4818 0.322816 TACGACCTGCCTACGAGGTT 60.323 55.000 0.00 0.00 44.28 3.50
2616 4819 1.183676 ACGACCTGCCTACGAGGTTT 61.184 55.000 0.00 0.00 44.28 3.27
2617 4820 0.736325 CGACCTGCCTACGAGGTTTG 60.736 60.000 0.00 0.00 44.28 2.93
2618 4821 0.391263 GACCTGCCTACGAGGTTTGG 60.391 60.000 0.00 0.00 44.28 3.28
2619 4822 1.125711 ACCTGCCTACGAGGTTTGGT 61.126 55.000 0.00 0.00 41.31 3.67
2620 4823 0.391263 CCTGCCTACGAGGTTTGGTC 60.391 60.000 0.00 0.00 37.80 4.02
2621 4824 0.608640 CTGCCTACGAGGTTTGGTCT 59.391 55.000 0.00 0.00 37.80 3.85
2622 4825 1.002087 CTGCCTACGAGGTTTGGTCTT 59.998 52.381 0.00 0.00 37.80 3.01
2623 4826 1.270625 TGCCTACGAGGTTTGGTCTTG 60.271 52.381 0.00 0.00 37.80 3.02
2624 4827 1.944430 GCCTACGAGGTTTGGTCTTGG 60.944 57.143 0.00 0.00 37.80 3.61
2625 4828 1.621814 CCTACGAGGTTTGGTCTTGGA 59.378 52.381 0.00 0.00 0.00 3.53
2626 4829 2.612221 CCTACGAGGTTTGGTCTTGGAC 60.612 54.545 0.00 0.00 0.00 4.02
2627 4830 1.129058 ACGAGGTTTGGTCTTGGACT 58.871 50.000 0.00 0.00 32.47 3.85
2628 4831 1.202651 ACGAGGTTTGGTCTTGGACTG 60.203 52.381 0.00 0.00 32.47 3.51
2629 4832 1.202651 CGAGGTTTGGTCTTGGACTGT 60.203 52.381 0.00 0.00 32.47 3.55
2630 4833 2.036733 CGAGGTTTGGTCTTGGACTGTA 59.963 50.000 0.00 0.00 32.47 2.74
2631 4834 3.665190 GAGGTTTGGTCTTGGACTGTAG 58.335 50.000 0.00 0.00 32.47 2.74
2632 4835 3.314693 AGGTTTGGTCTTGGACTGTAGA 58.685 45.455 0.00 0.00 32.47 2.59
2633 4836 3.910627 AGGTTTGGTCTTGGACTGTAGAT 59.089 43.478 0.00 0.00 32.47 1.98
2634 4837 5.091552 AGGTTTGGTCTTGGACTGTAGATA 58.908 41.667 0.00 0.00 32.47 1.98
2635 4838 5.046520 AGGTTTGGTCTTGGACTGTAGATAC 60.047 44.000 0.00 0.00 32.47 2.24
2636 4839 4.713824 TTGGTCTTGGACTGTAGATACG 57.286 45.455 0.00 0.00 32.47 3.06
2637 4840 3.693807 TGGTCTTGGACTGTAGATACGT 58.306 45.455 0.00 0.00 32.47 3.57
2638 4841 4.847198 TGGTCTTGGACTGTAGATACGTA 58.153 43.478 0.00 0.00 32.47 3.57
2639 4842 5.443283 TGGTCTTGGACTGTAGATACGTAT 58.557 41.667 8.05 8.05 32.47 3.06
2640 4843 5.530171 TGGTCTTGGACTGTAGATACGTATC 59.470 44.000 25.00 25.00 32.47 2.24
2641 4844 5.764192 GGTCTTGGACTGTAGATACGTATCT 59.236 44.000 33.93 33.93 38.36 1.98
2642 4845 6.293516 GGTCTTGGACTGTAGATACGTATCTG 60.294 46.154 36.98 26.36 36.92 2.90
2643 4846 5.763698 TCTTGGACTGTAGATACGTATCTGG 59.236 44.000 36.98 28.60 42.66 3.86
2644 4847 3.819337 TGGACTGTAGATACGTATCTGGC 59.181 47.826 36.98 29.60 42.66 4.85
2645 4848 3.819337 GGACTGTAGATACGTATCTGGCA 59.181 47.826 36.98 31.62 42.66 4.92
2646 4849 4.083217 GGACTGTAGATACGTATCTGGCAG 60.083 50.000 37.21 37.21 43.99 4.85
2647 4850 3.821600 ACTGTAGATACGTATCTGGCAGG 59.178 47.826 38.86 30.28 43.43 4.85
2648 4851 4.072839 CTGTAGATACGTATCTGGCAGGA 58.927 47.826 34.84 22.34 42.66 3.86
2649 4852 4.663334 TGTAGATACGTATCTGGCAGGAT 58.337 43.478 36.98 18.22 42.66 3.24
2650 4853 4.459337 TGTAGATACGTATCTGGCAGGATG 59.541 45.833 36.98 10.95 42.66 3.51
2651 4854 2.828520 AGATACGTATCTGGCAGGATGG 59.171 50.000 32.07 4.89 41.28 3.51
2680 4883 8.659925 TTGCAGCAAAAAGAAAATCTAATTCA 57.340 26.923 4.99 0.00 0.00 2.57
2681 4884 8.301730 TGCAGCAAAAAGAAAATCTAATTCAG 57.698 30.769 0.00 0.00 0.00 3.02
2682 4885 7.385752 TGCAGCAAAAAGAAAATCTAATTCAGG 59.614 33.333 0.00 0.00 0.00 3.86
2683 4886 7.599998 GCAGCAAAAAGAAAATCTAATTCAGGA 59.400 33.333 0.00 0.00 0.00 3.86
2684 4887 9.480053 CAGCAAAAAGAAAATCTAATTCAGGAA 57.520 29.630 0.00 0.00 0.00 3.36
2692 4895 8.964772 AGAAAATCTAATTCAGGAAATCAGTGG 58.035 33.333 0.00 0.00 0.00 4.00
2693 4896 8.884124 AAAATCTAATTCAGGAAATCAGTGGA 57.116 30.769 0.00 0.00 0.00 4.02
2694 4897 8.517062 AAATCTAATTCAGGAAATCAGTGGAG 57.483 34.615 0.00 0.00 0.00 3.86
2695 4898 6.627087 TCTAATTCAGGAAATCAGTGGAGT 57.373 37.500 0.00 0.00 0.00 3.85
2696 4899 6.644347 TCTAATTCAGGAAATCAGTGGAGTC 58.356 40.000 0.00 0.00 0.00 3.36
2697 4900 5.511386 AATTCAGGAAATCAGTGGAGTCT 57.489 39.130 0.00 0.00 0.00 3.24
2698 4901 3.969287 TCAGGAAATCAGTGGAGTCTG 57.031 47.619 0.00 0.00 36.85 3.51
2699 4902 3.510459 TCAGGAAATCAGTGGAGTCTGA 58.490 45.455 0.00 0.00 46.39 3.27
2700 4903 3.903714 TCAGGAAATCAGTGGAGTCTGAA 59.096 43.478 0.62 0.00 45.65 3.02
2701 4904 4.347876 TCAGGAAATCAGTGGAGTCTGAAA 59.652 41.667 0.62 0.00 45.65 2.69
2702 4905 5.065914 CAGGAAATCAGTGGAGTCTGAAAA 58.934 41.667 0.62 0.00 45.65 2.29
2703 4906 5.532406 CAGGAAATCAGTGGAGTCTGAAAAA 59.468 40.000 0.62 0.00 45.65 1.94
2704 4907 6.208204 CAGGAAATCAGTGGAGTCTGAAAAAT 59.792 38.462 0.62 0.00 45.65 1.82
2705 4908 6.208204 AGGAAATCAGTGGAGTCTGAAAAATG 59.792 38.462 0.62 0.00 45.65 2.32
2706 4909 6.207417 GGAAATCAGTGGAGTCTGAAAAATGA 59.793 38.462 0.62 0.00 45.65 2.57
2707 4910 7.255590 GGAAATCAGTGGAGTCTGAAAAATGAA 60.256 37.037 0.62 0.00 45.65 2.57
2708 4911 6.814506 ATCAGTGGAGTCTGAAAAATGAAG 57.185 37.500 0.62 0.00 45.65 3.02
2709 4912 5.684704 TCAGTGGAGTCTGAAAAATGAAGT 58.315 37.500 0.00 0.00 40.82 3.01
2710 4913 6.826668 TCAGTGGAGTCTGAAAAATGAAGTA 58.173 36.000 0.00 0.00 40.82 2.24
2711 4914 7.279615 TCAGTGGAGTCTGAAAAATGAAGTAA 58.720 34.615 0.00 0.00 40.82 2.24
2712 4915 7.773224 TCAGTGGAGTCTGAAAAATGAAGTAAA 59.227 33.333 0.00 0.00 40.82 2.01
2713 4916 8.571336 CAGTGGAGTCTGAAAAATGAAGTAAAT 58.429 33.333 0.00 0.00 37.61 1.40
2714 4917 8.787852 AGTGGAGTCTGAAAAATGAAGTAAATC 58.212 33.333 0.00 0.00 0.00 2.17
2715 4918 8.787852 GTGGAGTCTGAAAAATGAAGTAAATCT 58.212 33.333 0.00 0.00 0.00 2.40
2742 4945 9.868277 ATGTTACTAGAGAGAAACATTTCAGAG 57.132 33.333 7.10 0.02 38.98 3.35
2743 4946 8.861086 TGTTACTAGAGAGAAACATTTCAGAGT 58.139 33.333 7.10 5.04 39.61 3.24
2744 4947 9.699703 GTTACTAGAGAGAAACATTTCAGAGTT 57.300 33.333 7.10 0.00 39.61 3.01
2746 4949 8.600449 ACTAGAGAGAAACATTTCAGAGTTTG 57.400 34.615 7.10 0.00 38.01 2.93
2747 4950 8.424918 ACTAGAGAGAAACATTTCAGAGTTTGA 58.575 33.333 7.10 0.00 38.01 2.69
2748 4951 9.265901 CTAGAGAGAAACATTTCAGAGTTTGAA 57.734 33.333 7.10 0.00 43.92 2.69
2749 4952 7.924940 AGAGAGAAACATTTCAGAGTTTGAAC 58.075 34.615 7.10 0.00 45.22 3.18
2750 4953 7.772757 AGAGAGAAACATTTCAGAGTTTGAACT 59.227 33.333 7.10 0.00 45.22 3.01
2751 4954 7.924940 AGAGAAACATTTCAGAGTTTGAACTC 58.075 34.615 14.49 14.49 45.22 3.01
2752 4955 7.554118 AGAGAAACATTTCAGAGTTTGAACTCA 59.446 33.333 21.99 5.59 45.22 3.41
2753 4956 7.701445 AGAAACATTTCAGAGTTTGAACTCAG 58.299 34.615 21.99 15.77 45.22 3.35
2754 4957 7.201767 AGAAACATTTCAGAGTTTGAACTCAGG 60.202 37.037 21.99 14.86 45.22 3.86
2761 4964 2.378038 AGTTTGAACTCAGGCAAAGCA 58.622 42.857 0.00 0.00 34.95 3.91
2762 4965 2.961062 AGTTTGAACTCAGGCAAAGCAT 59.039 40.909 0.00 0.00 34.95 3.79
2763 4966 3.385755 AGTTTGAACTCAGGCAAAGCATT 59.614 39.130 0.00 0.00 34.95 3.56
2764 4967 4.122046 GTTTGAACTCAGGCAAAGCATTT 58.878 39.130 0.00 0.00 40.26 2.32
2765 4968 3.648339 TGAACTCAGGCAAAGCATTTC 57.352 42.857 0.00 0.00 35.03 2.17
2766 4969 2.957680 TGAACTCAGGCAAAGCATTTCA 59.042 40.909 0.00 0.00 35.03 2.69
2767 4970 3.005050 TGAACTCAGGCAAAGCATTTCAG 59.995 43.478 0.00 0.00 35.03 3.02
2768 4971 2.867624 ACTCAGGCAAAGCATTTCAGA 58.132 42.857 0.00 0.00 35.03 3.27
2769 4972 3.428532 ACTCAGGCAAAGCATTTCAGAT 58.571 40.909 0.00 0.00 35.03 2.90
2770 4973 3.192844 ACTCAGGCAAAGCATTTCAGATG 59.807 43.478 0.00 0.00 35.03 2.90
2771 4974 3.423749 TCAGGCAAAGCATTTCAGATGA 58.576 40.909 0.00 0.00 35.03 2.92
2772 4975 3.192001 TCAGGCAAAGCATTTCAGATGAC 59.808 43.478 0.00 0.00 35.03 3.06
2773 4976 3.192844 CAGGCAAAGCATTTCAGATGACT 59.807 43.478 0.00 0.00 35.03 3.41
2774 4977 3.830755 AGGCAAAGCATTTCAGATGACTT 59.169 39.130 0.00 0.00 35.03 3.01
2775 4978 4.282703 AGGCAAAGCATTTCAGATGACTTT 59.717 37.500 0.00 0.00 35.03 2.66
2776 4979 5.477984 AGGCAAAGCATTTCAGATGACTTTA 59.522 36.000 0.00 0.00 35.03 1.85
2777 4980 5.803967 GGCAAAGCATTTCAGATGACTTTAG 59.196 40.000 0.00 0.00 35.03 1.85
2778 4981 6.385033 GCAAAGCATTTCAGATGACTTTAGT 58.615 36.000 0.00 0.00 35.03 2.24
2779 4982 6.525976 GCAAAGCATTTCAGATGACTTTAGTC 59.474 38.462 2.92 2.92 40.18 2.59
2780 4983 6.749923 AAGCATTTCAGATGACTTTAGTCC 57.250 37.500 7.39 0.00 44.15 3.85
2781 4984 5.809001 AGCATTTCAGATGACTTTAGTCCA 58.191 37.500 7.39 0.00 44.15 4.02
2782 4985 6.240894 AGCATTTCAGATGACTTTAGTCCAA 58.759 36.000 7.39 0.00 44.15 3.53
2783 4986 6.150140 AGCATTTCAGATGACTTTAGTCCAAC 59.850 38.462 7.39 0.02 44.15 3.77
2784 4987 6.150140 GCATTTCAGATGACTTTAGTCCAACT 59.850 38.462 7.39 2.09 44.15 3.16
2785 4988 7.524912 CATTTCAGATGACTTTAGTCCAACTG 58.475 38.462 7.39 12.32 44.15 3.16
2786 4989 5.152623 TCAGATGACTTTAGTCCAACTGG 57.847 43.478 18.44 0.00 44.15 4.00
2787 4990 3.686726 CAGATGACTTTAGTCCAACTGGC 59.313 47.826 7.39 0.00 44.15 4.85
2788 4991 3.584848 AGATGACTTTAGTCCAACTGGCT 59.415 43.478 7.39 0.00 44.15 4.75
2789 4992 3.857157 TGACTTTAGTCCAACTGGCTT 57.143 42.857 7.39 0.00 44.15 4.35
2790 4993 3.740115 TGACTTTAGTCCAACTGGCTTC 58.260 45.455 7.39 0.00 44.15 3.86
2791 4994 3.135712 TGACTTTAGTCCAACTGGCTTCA 59.864 43.478 7.39 0.00 44.15 3.02
2792 4995 3.744660 ACTTTAGTCCAACTGGCTTCAG 58.255 45.455 0.00 0.00 43.84 3.02
2793 4996 3.391296 ACTTTAGTCCAACTGGCTTCAGA 59.609 43.478 0.00 0.00 40.86 3.27
2794 4997 4.141482 ACTTTAGTCCAACTGGCTTCAGAA 60.141 41.667 0.00 0.00 40.86 3.02
2795 4998 4.431416 TTAGTCCAACTGGCTTCAGAAA 57.569 40.909 0.00 0.00 40.86 2.52
2796 4999 2.576615 AGTCCAACTGGCTTCAGAAAC 58.423 47.619 0.00 0.00 40.86 2.78
2797 5000 2.173569 AGTCCAACTGGCTTCAGAAACT 59.826 45.455 0.00 0.00 40.86 2.66
2798 5001 2.291741 GTCCAACTGGCTTCAGAAACTG 59.708 50.000 0.00 0.00 40.86 3.16
2799 5002 2.092429 TCCAACTGGCTTCAGAAACTGT 60.092 45.455 0.00 0.00 40.86 3.55
2800 5003 2.033801 CCAACTGGCTTCAGAAACTGTG 59.966 50.000 0.00 0.00 40.86 3.66
2801 5004 2.684881 CAACTGGCTTCAGAAACTGTGT 59.315 45.455 0.00 0.00 40.86 3.72
2802 5005 3.004752 ACTGGCTTCAGAAACTGTGTT 57.995 42.857 0.00 0.00 40.86 3.32
2803 5006 4.150897 ACTGGCTTCAGAAACTGTGTTA 57.849 40.909 0.00 0.00 40.86 2.41
2804 5007 4.523083 ACTGGCTTCAGAAACTGTGTTAA 58.477 39.130 0.00 0.00 40.86 2.01
2805 5008 4.947388 ACTGGCTTCAGAAACTGTGTTAAA 59.053 37.500 0.00 0.00 40.86 1.52
2806 5009 5.163652 ACTGGCTTCAGAAACTGTGTTAAAC 60.164 40.000 0.00 0.00 40.86 2.01
2807 5010 4.947388 TGGCTTCAGAAACTGTGTTAAACT 59.053 37.500 0.00 0.00 32.61 2.66
2808 5011 5.163663 TGGCTTCAGAAACTGTGTTAAACTG 60.164 40.000 0.00 0.00 32.61 3.16
2809 5012 5.065988 GGCTTCAGAAACTGTGTTAAACTGA 59.934 40.000 0.00 0.00 32.61 3.41
2810 5013 6.195165 GCTTCAGAAACTGTGTTAAACTGAG 58.805 40.000 0.00 0.00 35.05 3.35
2811 5014 6.037172 GCTTCAGAAACTGTGTTAAACTGAGA 59.963 38.462 0.00 0.00 35.05 3.27
2812 5015 6.903883 TCAGAAACTGTGTTAAACTGAGAC 57.096 37.500 0.00 0.00 32.61 3.36
2813 5016 6.640518 TCAGAAACTGTGTTAAACTGAGACT 58.359 36.000 0.00 0.00 32.61 3.24
2814 5017 7.778083 TCAGAAACTGTGTTAAACTGAGACTA 58.222 34.615 0.00 0.00 32.61 2.59
2815 5018 7.705325 TCAGAAACTGTGTTAAACTGAGACTAC 59.295 37.037 0.00 0.00 32.61 2.73
2816 5019 7.707035 CAGAAACTGTGTTAAACTGAGACTACT 59.293 37.037 0.00 0.00 0.00 2.57
2817 5020 8.910944 AGAAACTGTGTTAAACTGAGACTACTA 58.089 33.333 0.00 0.00 0.00 1.82
2818 5021 9.525409 GAAACTGTGTTAAACTGAGACTACTAA 57.475 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.323957 AGGCACGAACCCTAACTTCC 59.676 55.000 0.00 0.00 0.00 3.46
1 2 1.275573 AGAGGCACGAACCCTAACTTC 59.724 52.381 0.00 0.00 31.41 3.01
109 113 9.384682 GATTGAATAAAACGACTAAAAACGGAA 57.615 29.630 0.00 0.00 0.00 4.30
128 132 5.279456 GGCACAAACCCTAACAAGATTGAAT 60.279 40.000 0.00 0.00 0.00 2.57
151 155 1.135333 GTCTCGCCTTCTTGAGTAGGG 59.865 57.143 5.92 0.00 33.72 3.53
366 371 2.436646 CAGGAACCGCCGCTGATT 60.437 61.111 0.00 0.00 43.43 2.57
380 385 4.421515 CCAGCACCCCAGAGCAGG 62.422 72.222 0.00 0.00 30.42 4.85
384 389 0.692419 ATAGGACCAGCACCCCAGAG 60.692 60.000 0.00 0.00 0.00 3.35
408 413 0.524862 GGGAAGTCGTCGTGCTAAGA 59.475 55.000 0.00 0.00 0.00 2.10
463 468 2.443394 GGTCATCGCCCCTCCATCA 61.443 63.158 0.00 0.00 0.00 3.07
628 633 3.189495 GCAGCTCTTTTGTTACTTCTCCC 59.811 47.826 0.00 0.00 0.00 4.30
646 651 2.799371 GCAGCTCATTCCAGCAGC 59.201 61.111 0.00 0.00 43.63 5.25
669 674 5.538118 AGCCCGTTAAAGAAAAATTGGAAG 58.462 37.500 0.00 0.00 0.00 3.46
670 675 5.538849 AGCCCGTTAAAGAAAAATTGGAA 57.461 34.783 0.00 0.00 0.00 3.53
682 687 6.713450 AGATAAAACTGAAGAAGCCCGTTAAA 59.287 34.615 0.00 0.00 0.00 1.52
685 690 4.652822 AGATAAAACTGAAGAAGCCCGTT 58.347 39.130 0.00 0.00 0.00 4.44
686 691 4.254492 GAGATAAAACTGAAGAAGCCCGT 58.746 43.478 0.00 0.00 0.00 5.28
716 721 4.250464 TGGTTTCTACATTACAAGGAGCG 58.750 43.478 0.00 0.00 0.00 5.03
867 913 5.514274 TTGGTCCACTTTTTGATTGTCTC 57.486 39.130 0.00 0.00 0.00 3.36
868 914 4.202151 GCTTGGTCCACTTTTTGATTGTCT 60.202 41.667 0.00 0.00 0.00 3.41
869 915 4.051237 GCTTGGTCCACTTTTTGATTGTC 58.949 43.478 0.00 0.00 0.00 3.18
870 916 3.450457 TGCTTGGTCCACTTTTTGATTGT 59.550 39.130 0.00 0.00 0.00 2.71
871 917 4.057406 TGCTTGGTCCACTTTTTGATTG 57.943 40.909 0.00 0.00 0.00 2.67
872 918 4.751767 TTGCTTGGTCCACTTTTTGATT 57.248 36.364 0.00 0.00 0.00 2.57
873 919 4.961438 ATTGCTTGGTCCACTTTTTGAT 57.039 36.364 0.00 0.00 0.00 2.57
976 1034 2.069273 CGGAATGAGAACCCGATATGC 58.931 52.381 0.00 0.00 45.58 3.14
1123 3191 2.044252 CTCCTTCTCGGGGTCGGA 60.044 66.667 0.00 0.00 36.95 4.55
1222 3314 0.519077 GAAAGAAACTGCGCCTCCAG 59.481 55.000 4.18 0.00 38.78 3.86
1248 3349 2.739913 CGCCAAAATCAAAGACGGTAGA 59.260 45.455 0.00 0.00 0.00 2.59
1268 3369 1.734465 GTCTTCTTCCCTGCAATGACG 59.266 52.381 0.00 0.00 0.00 4.35
1323 3424 1.910580 TTCAGGCGGTTGATCCTCCC 61.911 60.000 0.00 0.00 41.77 4.30
1501 3605 2.718073 CCAAGGCCAAGCTGATGCC 61.718 63.158 5.01 12.29 45.70 4.40
1571 3675 2.615912 CAAGAAAAGGGCCATCGAGATC 59.384 50.000 6.18 0.00 0.00 2.75
1622 3726 2.849942 TCCATGAAGTTATCCATGCCG 58.150 47.619 0.00 0.00 38.95 5.69
1759 3866 1.134521 ACACCAAGCAAACAGACTCGA 60.135 47.619 0.00 0.00 0.00 4.04
1761 3868 1.334869 CCACACCAAGCAAACAGACTC 59.665 52.381 0.00 0.00 0.00 3.36
1873 4015 3.407698 TGAAGCACTCGAGCCATAAAAA 58.592 40.909 13.61 0.00 34.23 1.94
1877 4019 1.275010 TGTTGAAGCACTCGAGCCATA 59.725 47.619 13.61 0.00 34.23 2.74
1895 4038 8.157476 ACTAAAAGACTAGTCCACATGATTTGT 58.843 33.333 19.38 8.20 39.91 2.83
1949 4092 6.705302 TCAGAAGTTCAGAACATAGCAATCT 58.295 36.000 15.85 4.58 0.00 2.40
2038 4195 7.174599 CCATGGAATATTCAGATTGAGGTTCTC 59.825 40.741 17.07 0.00 0.00 2.87
2100 4258 2.903357 CGGTGCAGGATGGCTACT 59.097 61.111 0.00 0.00 35.86 2.57
2173 4331 3.056035 GTCCAAGACCAAATCTCGTAGGT 60.056 47.826 0.00 0.00 36.27 3.08
2182 4340 5.250774 ACATACCTAGTGTCCAAGACCAAAT 59.749 40.000 0.00 0.00 0.00 2.32
2197 4355 1.271054 GCCATCCTGCCACATACCTAG 60.271 57.143 0.00 0.00 0.00 3.02
2309 4477 3.442273 TCGTTTGCCTGAGTTCAAACTTT 59.558 39.130 18.55 0.00 45.78 2.66
2405 4608 7.632861 TGAAATCATGAAAGAGGTCCTGAATA 58.367 34.615 0.00 0.00 0.00 1.75
2406 4609 6.487828 TGAAATCATGAAAGAGGTCCTGAAT 58.512 36.000 0.00 0.00 0.00 2.57
2407 4610 5.879763 TGAAATCATGAAAGAGGTCCTGAA 58.120 37.500 0.00 0.00 0.00 3.02
2408 4611 5.503634 TGAAATCATGAAAGAGGTCCTGA 57.496 39.130 0.00 0.00 0.00 3.86
2409 4612 6.579666 TTTGAAATCATGAAAGAGGTCCTG 57.420 37.500 0.00 0.00 0.00 3.86
2410 4613 6.210185 CCTTTTGAAATCATGAAAGAGGTCCT 59.790 38.462 0.00 0.00 32.29 3.85
2411 4614 6.209391 TCCTTTTGAAATCATGAAAGAGGTCC 59.791 38.462 12.00 0.00 32.29 4.46
2412 4615 7.219484 TCCTTTTGAAATCATGAAAGAGGTC 57.781 36.000 12.00 0.93 32.29 3.85
2413 4616 7.787623 ATCCTTTTGAAATCATGAAAGAGGT 57.212 32.000 12.00 1.39 32.29 3.85
2414 4617 9.745880 CATATCCTTTTGAAATCATGAAAGAGG 57.254 33.333 0.00 3.79 32.29 3.69
2434 4637 9.938280 TGCCAAGTTACATATAGTTACATATCC 57.062 33.333 0.00 0.00 32.34 2.59
2439 4642 9.489084 GATCATGCCAAGTTACATATAGTTACA 57.511 33.333 0.00 0.00 32.34 2.41
2440 4643 9.489084 TGATCATGCCAAGTTACATATAGTTAC 57.511 33.333 0.00 0.00 0.00 2.50
2441 4644 9.710900 CTGATCATGCCAAGTTACATATAGTTA 57.289 33.333 0.00 0.00 0.00 2.24
2442 4645 8.213679 ACTGATCATGCCAAGTTACATATAGTT 58.786 33.333 0.00 0.00 0.00 2.24
2443 4646 7.658982 CACTGATCATGCCAAGTTACATATAGT 59.341 37.037 0.00 0.00 0.00 2.12
2444 4647 7.874528 TCACTGATCATGCCAAGTTACATATAG 59.125 37.037 0.00 0.00 0.00 1.31
2445 4648 7.734942 TCACTGATCATGCCAAGTTACATATA 58.265 34.615 0.00 0.00 0.00 0.86
2446 4649 6.594744 TCACTGATCATGCCAAGTTACATAT 58.405 36.000 0.00 0.00 0.00 1.78
2447 4650 5.988287 TCACTGATCATGCCAAGTTACATA 58.012 37.500 0.00 0.00 0.00 2.29
2448 4651 4.847198 TCACTGATCATGCCAAGTTACAT 58.153 39.130 0.00 0.00 0.00 2.29
2449 4652 4.284829 TCACTGATCATGCCAAGTTACA 57.715 40.909 0.00 0.00 0.00 2.41
2450 4653 4.497006 GCATCACTGATCATGCCAAGTTAC 60.497 45.833 7.64 0.00 39.70 2.50
2451 4654 3.628942 GCATCACTGATCATGCCAAGTTA 59.371 43.478 7.64 0.00 39.70 2.24
2452 4655 2.426024 GCATCACTGATCATGCCAAGTT 59.574 45.455 7.64 0.00 39.70 2.66
2453 4656 2.022195 GCATCACTGATCATGCCAAGT 58.978 47.619 7.64 0.00 39.70 3.16
2454 4657 2.021457 TGCATCACTGATCATGCCAAG 58.979 47.619 14.73 0.00 44.15 3.61
2455 4658 2.021457 CTGCATCACTGATCATGCCAA 58.979 47.619 14.73 0.00 44.15 4.52
2456 4659 1.210967 TCTGCATCACTGATCATGCCA 59.789 47.619 14.73 4.45 44.15 4.92
2457 4660 1.963172 TCTGCATCACTGATCATGCC 58.037 50.000 14.73 0.54 44.15 4.40
2458 4661 4.566987 TCTATCTGCATCACTGATCATGC 58.433 43.478 11.31 11.31 44.87 4.06
2459 4662 5.408909 GGTTCTATCTGCATCACTGATCATG 59.591 44.000 0.00 0.00 37.96 3.07
2460 4663 5.512749 GGGTTCTATCTGCATCACTGATCAT 60.513 44.000 0.00 0.00 37.96 2.45
2461 4664 4.202295 GGGTTCTATCTGCATCACTGATCA 60.202 45.833 0.00 0.00 37.96 2.92
2462 4665 4.314121 GGGTTCTATCTGCATCACTGATC 58.686 47.826 0.00 0.00 37.96 2.92
2463 4666 3.072184 GGGGTTCTATCTGCATCACTGAT 59.928 47.826 0.00 0.00 39.90 2.90
2464 4667 2.435805 GGGGTTCTATCTGCATCACTGA 59.564 50.000 0.00 0.00 0.00 3.41
2465 4668 2.171237 TGGGGTTCTATCTGCATCACTG 59.829 50.000 0.00 0.00 0.00 3.66
2466 4669 2.481441 TGGGGTTCTATCTGCATCACT 58.519 47.619 0.00 0.00 0.00 3.41
2467 4670 3.281727 TTGGGGTTCTATCTGCATCAC 57.718 47.619 0.00 0.00 0.00 3.06
2468 4671 3.459227 TGATTGGGGTTCTATCTGCATCA 59.541 43.478 0.00 0.00 0.00 3.07
2469 4672 4.090761 TGATTGGGGTTCTATCTGCATC 57.909 45.455 0.00 0.00 0.00 3.91
2470 4673 4.524802 TTGATTGGGGTTCTATCTGCAT 57.475 40.909 0.00 0.00 0.00 3.96
2471 4674 4.166725 AGATTGATTGGGGTTCTATCTGCA 59.833 41.667 0.00 0.00 35.37 4.41
2472 4675 4.518211 CAGATTGATTGGGGTTCTATCTGC 59.482 45.833 10.57 0.00 42.32 4.26
2473 4676 5.933617 TCAGATTGATTGGGGTTCTATCTG 58.066 41.667 14.72 14.72 46.09 2.90
2474 4677 6.581388 TTCAGATTGATTGGGGTTCTATCT 57.419 37.500 0.00 0.00 36.53 1.98
2475 4678 7.230027 AGATTCAGATTGATTGGGGTTCTATC 58.770 38.462 0.00 0.00 0.00 2.08
2476 4679 7.159201 AGATTCAGATTGATTGGGGTTCTAT 57.841 36.000 0.00 0.00 0.00 1.98
2477 4680 6.581388 AGATTCAGATTGATTGGGGTTCTA 57.419 37.500 0.00 0.00 0.00 2.10
2478 4681 5.463051 AGATTCAGATTGATTGGGGTTCT 57.537 39.130 0.00 0.00 0.00 3.01
2479 4682 5.068329 GGAAGATTCAGATTGATTGGGGTTC 59.932 44.000 0.00 0.00 0.00 3.62
2480 4683 4.958581 GGAAGATTCAGATTGATTGGGGTT 59.041 41.667 0.00 0.00 0.00 4.11
2481 4684 4.017222 TGGAAGATTCAGATTGATTGGGGT 60.017 41.667 0.00 0.00 0.00 4.95
2482 4685 4.539726 TGGAAGATTCAGATTGATTGGGG 58.460 43.478 0.00 0.00 0.00 4.96
2483 4686 5.010719 CCATGGAAGATTCAGATTGATTGGG 59.989 44.000 5.56 0.00 0.00 4.12
2484 4687 5.597182 ACCATGGAAGATTCAGATTGATTGG 59.403 40.000 21.47 0.00 0.00 3.16
2485 4688 6.320418 TCACCATGGAAGATTCAGATTGATTG 59.680 38.462 21.47 0.00 0.00 2.67
2486 4689 6.429151 TCACCATGGAAGATTCAGATTGATT 58.571 36.000 21.47 0.00 0.00 2.57
2487 4690 6.009908 TCACCATGGAAGATTCAGATTGAT 57.990 37.500 21.47 0.00 0.00 2.57
2488 4691 5.434408 CTCACCATGGAAGATTCAGATTGA 58.566 41.667 21.47 5.91 0.00 2.57
2489 4692 4.579340 CCTCACCATGGAAGATTCAGATTG 59.421 45.833 21.47 0.97 0.00 2.67
2490 4693 4.476113 TCCTCACCATGGAAGATTCAGATT 59.524 41.667 21.47 0.00 0.00 2.40
2491 4694 4.042884 TCCTCACCATGGAAGATTCAGAT 58.957 43.478 21.47 0.00 0.00 2.90
2492 4695 3.453868 TCCTCACCATGGAAGATTCAGA 58.546 45.455 21.47 7.67 0.00 3.27
2493 4696 3.920231 TCCTCACCATGGAAGATTCAG 57.080 47.619 21.47 4.07 0.00 3.02
2500 4703 1.635487 CCTTCCTTCCTCACCATGGAA 59.365 52.381 21.47 4.97 40.85 3.53
2501 4704 1.289160 CCTTCCTTCCTCACCATGGA 58.711 55.000 21.47 0.00 0.00 3.41
2502 4705 0.995024 ACCTTCCTTCCTCACCATGG 59.005 55.000 11.19 11.19 0.00 3.66
2503 4706 1.952367 GCACCTTCCTTCCTCACCATG 60.952 57.143 0.00 0.00 0.00 3.66
2504 4707 0.329596 GCACCTTCCTTCCTCACCAT 59.670 55.000 0.00 0.00 0.00 3.55
2505 4708 1.761174 GCACCTTCCTTCCTCACCA 59.239 57.895 0.00 0.00 0.00 4.17
2506 4709 1.376037 CGCACCTTCCTTCCTCACC 60.376 63.158 0.00 0.00 0.00 4.02
2507 4710 1.376037 CCGCACCTTCCTTCCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
2508 4711 1.841556 ACCGCACCTTCCTTCCTCA 60.842 57.895 0.00 0.00 0.00 3.86
2509 4712 1.376037 CACCGCACCTTCCTTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
2510 4713 2.750350 CACCGCACCTTCCTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
2511 4714 2.359975 CCACCGCACCTTCCTTCC 60.360 66.667 0.00 0.00 0.00 3.46
2512 4715 1.671379 GTCCACCGCACCTTCCTTC 60.671 63.158 0.00 0.00 0.00 3.46
2513 4716 2.430367 GTCCACCGCACCTTCCTT 59.570 61.111 0.00 0.00 0.00 3.36
2514 4717 3.637273 GGTCCACCGCACCTTCCT 61.637 66.667 0.00 0.00 0.00 3.36
2524 4727 2.064581 AGGATGGCTACGGTCCACC 61.065 63.158 0.00 0.00 36.26 4.61
2525 4728 1.144057 CAGGATGGCTACGGTCCAC 59.856 63.158 0.00 0.00 36.26 4.02
2526 4729 2.731571 GCAGGATGGCTACGGTCCA 61.732 63.158 0.00 0.00 38.09 4.02
2527 4730 2.109181 GCAGGATGGCTACGGTCC 59.891 66.667 0.00 0.00 35.86 4.46
2528 4731 1.521681 GTGCAGGATGGCTACGGTC 60.522 63.158 0.00 0.00 35.86 4.79
2529 4732 1.990060 AGTGCAGGATGGCTACGGT 60.990 57.895 0.00 0.00 35.86 4.83
2530 4733 1.522355 CAGTGCAGGATGGCTACGG 60.522 63.158 0.00 0.00 35.86 4.02
2531 4734 2.176273 GCAGTGCAGGATGGCTACG 61.176 63.158 11.09 0.00 35.86 3.51
2532 4735 1.094073 CAGCAGTGCAGGATGGCTAC 61.094 60.000 19.20 0.00 35.86 3.58
2533 4736 1.222661 CAGCAGTGCAGGATGGCTA 59.777 57.895 19.20 0.00 35.86 3.93
2534 4737 2.045242 CAGCAGTGCAGGATGGCT 60.045 61.111 19.20 0.00 35.86 4.75
2560 4763 1.078759 GTGGATCAAGGAGCGACACG 61.079 60.000 0.00 0.00 0.00 4.49
2561 4764 0.247736 AGTGGATCAAGGAGCGACAC 59.752 55.000 0.00 0.00 29.55 3.67
2562 4765 0.976641 AAGTGGATCAAGGAGCGACA 59.023 50.000 0.00 0.00 29.55 4.35
2563 4766 1.066858 TGAAGTGGATCAAGGAGCGAC 60.067 52.381 0.00 0.00 0.00 5.19
2564 4767 1.205655 CTGAAGTGGATCAAGGAGCGA 59.794 52.381 0.00 0.00 0.00 4.93
2565 4768 1.066573 ACTGAAGTGGATCAAGGAGCG 60.067 52.381 0.00 0.00 0.00 5.03
2566 4769 2.354259 CACTGAAGTGGATCAAGGAGC 58.646 52.381 2.35 0.00 42.10 4.70
2567 4770 2.027377 AGCACTGAAGTGGATCAAGGAG 60.027 50.000 12.20 0.00 45.72 3.69
2568 4771 1.980765 AGCACTGAAGTGGATCAAGGA 59.019 47.619 12.20 0.00 45.72 3.36
2569 4772 2.354259 GAGCACTGAAGTGGATCAAGG 58.646 52.381 12.20 0.00 45.72 3.61
2570 4773 1.998315 CGAGCACTGAAGTGGATCAAG 59.002 52.381 12.20 0.00 45.72 3.02
2571 4774 1.618343 TCGAGCACTGAAGTGGATCAA 59.382 47.619 12.20 0.00 45.72 2.57
2572 4775 1.256812 TCGAGCACTGAAGTGGATCA 58.743 50.000 12.20 0.00 45.72 2.92
2573 4776 2.370281 TTCGAGCACTGAAGTGGATC 57.630 50.000 12.20 1.30 45.72 3.36
2574 4777 2.693069 CTTTCGAGCACTGAAGTGGAT 58.307 47.619 12.20 0.00 45.72 3.41
2575 4778 1.873903 GCTTTCGAGCACTGAAGTGGA 60.874 52.381 12.20 0.00 45.72 4.02
2576 4779 0.514691 GCTTTCGAGCACTGAAGTGG 59.485 55.000 12.20 0.00 45.72 4.00
2578 4781 2.678324 GTAGCTTTCGAGCACTGAAGT 58.322 47.619 0.00 0.00 37.25 3.01
2579 4782 1.651138 CGTAGCTTTCGAGCACTGAAG 59.349 52.381 0.00 0.00 37.25 3.02
2580 4783 1.268625 TCGTAGCTTTCGAGCACTGAA 59.731 47.619 9.11 0.00 37.25 3.02
2581 4784 0.879090 TCGTAGCTTTCGAGCACTGA 59.121 50.000 9.11 0.00 37.25 3.41
2582 4785 0.985549 GTCGTAGCTTTCGAGCACTG 59.014 55.000 12.66 0.00 37.99 3.66
2583 4786 3.403276 GTCGTAGCTTTCGAGCACT 57.597 52.632 12.66 0.00 37.99 4.40
2587 4790 0.802607 GGCAGGTCGTAGCTTTCGAG 60.803 60.000 12.66 4.73 37.99 4.04
2588 4791 1.214589 GGCAGGTCGTAGCTTTCGA 59.785 57.895 9.11 9.11 34.91 3.71
2589 4792 0.454600 TAGGCAGGTCGTAGCTTTCG 59.545 55.000 0.00 0.00 0.00 3.46
2590 4793 1.798079 CGTAGGCAGGTCGTAGCTTTC 60.798 57.143 0.00 0.00 0.00 2.62
2591 4794 0.172803 CGTAGGCAGGTCGTAGCTTT 59.827 55.000 0.00 0.00 0.00 3.51
2592 4795 0.679002 TCGTAGGCAGGTCGTAGCTT 60.679 55.000 0.00 0.00 0.00 3.74
2593 4796 1.077930 TCGTAGGCAGGTCGTAGCT 60.078 57.895 0.00 0.00 0.00 3.32
2594 4797 1.355916 CTCGTAGGCAGGTCGTAGC 59.644 63.158 0.00 0.00 0.00 3.58
2595 4798 0.747283 ACCTCGTAGGCAGGTCGTAG 60.747 60.000 1.36 0.00 40.54 3.51
2596 4799 0.322816 AACCTCGTAGGCAGGTCGTA 60.323 55.000 6.92 0.00 44.03 3.43
2597 4800 1.183676 AAACCTCGTAGGCAGGTCGT 61.184 55.000 6.92 0.00 44.03 4.34
2598 4801 0.736325 CAAACCTCGTAGGCAGGTCG 60.736 60.000 6.92 0.00 44.03 4.79
2599 4802 0.391263 CCAAACCTCGTAGGCAGGTC 60.391 60.000 6.92 0.00 44.03 3.85
2601 4804 0.391263 GACCAAACCTCGTAGGCAGG 60.391 60.000 1.36 3.94 39.63 4.85
2602 4805 0.608640 AGACCAAACCTCGTAGGCAG 59.391 55.000 1.36 0.00 39.63 4.85
2603 4806 1.053424 AAGACCAAACCTCGTAGGCA 58.947 50.000 1.36 0.00 39.63 4.75
2604 4807 1.439679 CAAGACCAAACCTCGTAGGC 58.560 55.000 1.36 0.00 39.63 3.93
2605 4808 1.621814 TCCAAGACCAAACCTCGTAGG 59.378 52.381 0.03 0.03 42.49 3.18
2606 4809 2.299297 AGTCCAAGACCAAACCTCGTAG 59.701 50.000 0.00 0.00 32.18 3.51
2607 4810 2.036733 CAGTCCAAGACCAAACCTCGTA 59.963 50.000 0.00 0.00 32.18 3.43
2608 4811 1.129058 AGTCCAAGACCAAACCTCGT 58.871 50.000 0.00 0.00 32.18 4.18
2609 4812 1.202651 ACAGTCCAAGACCAAACCTCG 60.203 52.381 0.00 0.00 32.18 4.63
2610 4813 2.640316 ACAGTCCAAGACCAAACCTC 57.360 50.000 0.00 0.00 32.18 3.85
2611 4814 3.314693 TCTACAGTCCAAGACCAAACCT 58.685 45.455 0.00 0.00 32.18 3.50
2612 4815 3.764237 TCTACAGTCCAAGACCAAACC 57.236 47.619 0.00 0.00 32.18 3.27
2613 4816 4.863131 CGTATCTACAGTCCAAGACCAAAC 59.137 45.833 0.00 0.00 32.18 2.93
2614 4817 4.525487 ACGTATCTACAGTCCAAGACCAAA 59.475 41.667 0.00 0.00 32.18 3.28
2615 4818 4.084287 ACGTATCTACAGTCCAAGACCAA 58.916 43.478 0.00 0.00 32.18 3.67
2616 4819 3.693807 ACGTATCTACAGTCCAAGACCA 58.306 45.455 0.00 0.00 32.18 4.02
2617 4820 5.764192 AGATACGTATCTACAGTCCAAGACC 59.236 44.000 31.75 4.21 41.05 3.85
2618 4821 6.293516 CCAGATACGTATCTACAGTCCAAGAC 60.294 46.154 32.06 5.52 40.91 3.01
2619 4822 5.763698 CCAGATACGTATCTACAGTCCAAGA 59.236 44.000 32.06 0.00 40.91 3.02
2620 4823 5.563085 GCCAGATACGTATCTACAGTCCAAG 60.563 48.000 32.06 18.55 40.91 3.61
2621 4824 4.277672 GCCAGATACGTATCTACAGTCCAA 59.722 45.833 32.06 0.00 40.91 3.53
2622 4825 3.819337 GCCAGATACGTATCTACAGTCCA 59.181 47.826 32.06 0.00 40.91 4.02
2623 4826 3.819337 TGCCAGATACGTATCTACAGTCC 59.181 47.826 32.06 18.37 40.91 3.85
2624 4827 4.083217 CCTGCCAGATACGTATCTACAGTC 60.083 50.000 36.18 25.08 40.91 3.51
2625 4828 3.821600 CCTGCCAGATACGTATCTACAGT 59.178 47.826 36.18 20.37 40.91 3.55
2626 4829 4.072839 TCCTGCCAGATACGTATCTACAG 58.927 47.826 34.66 34.66 40.91 2.74
2627 4830 4.094830 TCCTGCCAGATACGTATCTACA 57.905 45.455 32.06 28.83 40.91 2.74
2628 4831 4.142359 CCATCCTGCCAGATACGTATCTAC 60.142 50.000 32.06 26.49 40.91 2.59
2629 4832 4.017126 CCATCCTGCCAGATACGTATCTA 58.983 47.826 32.06 19.06 40.91 1.98
2630 4833 2.828520 CCATCCTGCCAGATACGTATCT 59.171 50.000 28.45 28.45 43.51 1.98
2631 4834 2.675317 GCCATCCTGCCAGATACGTATC 60.675 54.545 25.00 25.00 0.00 2.24
2632 4835 1.276421 GCCATCCTGCCAGATACGTAT 59.724 52.381 8.05 8.05 0.00 3.06
2633 4836 0.679505 GCCATCCTGCCAGATACGTA 59.320 55.000 0.00 0.00 0.00 3.57
2634 4837 1.050988 AGCCATCCTGCCAGATACGT 61.051 55.000 0.00 0.00 0.00 3.57
2635 4838 0.969149 TAGCCATCCTGCCAGATACG 59.031 55.000 0.00 0.00 0.00 3.06
2636 4839 3.341823 CAATAGCCATCCTGCCAGATAC 58.658 50.000 0.00 0.00 0.00 2.24
2637 4840 2.290514 GCAATAGCCATCCTGCCAGATA 60.291 50.000 0.00 0.00 33.58 1.98
2638 4841 1.547223 GCAATAGCCATCCTGCCAGAT 60.547 52.381 0.00 0.00 33.58 2.90
2639 4842 0.179009 GCAATAGCCATCCTGCCAGA 60.179 55.000 0.00 0.00 33.58 3.86
2640 4843 0.466739 TGCAATAGCCATCCTGCCAG 60.467 55.000 0.00 0.00 41.13 4.85
2641 4844 0.466739 CTGCAATAGCCATCCTGCCA 60.467 55.000 0.00 0.00 41.13 4.92
2642 4845 2.338381 CTGCAATAGCCATCCTGCC 58.662 57.895 0.00 0.00 41.13 4.85
2654 4857 9.275398 TGAATTAGATTTTCTTTTTGCTGCAAT 57.725 25.926 16.77 0.00 0.00 3.56
2655 4858 8.659925 TGAATTAGATTTTCTTTTTGCTGCAA 57.340 26.923 11.69 11.69 0.00 4.08
2656 4859 7.385752 CCTGAATTAGATTTTCTTTTTGCTGCA 59.614 33.333 0.00 0.00 0.00 4.41
2657 4860 7.599998 TCCTGAATTAGATTTTCTTTTTGCTGC 59.400 33.333 0.00 0.00 0.00 5.25
2658 4861 9.480053 TTCCTGAATTAGATTTTCTTTTTGCTG 57.520 29.630 0.00 0.00 0.00 4.41
2666 4869 8.964772 CCACTGATTTCCTGAATTAGATTTTCT 58.035 33.333 0.00 0.00 35.51 2.52
2667 4870 8.960591 TCCACTGATTTCCTGAATTAGATTTTC 58.039 33.333 0.00 0.00 35.51 2.29
2668 4871 8.884124 TCCACTGATTTCCTGAATTAGATTTT 57.116 30.769 0.00 0.00 35.51 1.82
2669 4872 8.112183 ACTCCACTGATTTCCTGAATTAGATTT 58.888 33.333 0.00 0.00 35.51 2.17
2670 4873 7.637511 ACTCCACTGATTTCCTGAATTAGATT 58.362 34.615 0.00 0.00 35.51 2.40
2671 4874 7.127032 AGACTCCACTGATTTCCTGAATTAGAT 59.873 37.037 0.00 0.00 35.51 1.98
2672 4875 6.441924 AGACTCCACTGATTTCCTGAATTAGA 59.558 38.462 0.00 0.00 35.51 2.10
2673 4876 6.538021 CAGACTCCACTGATTTCCTGAATTAG 59.462 42.308 0.00 0.00 39.94 1.73
2674 4877 6.213397 TCAGACTCCACTGATTTCCTGAATTA 59.787 38.462 0.00 0.00 41.21 1.40
2675 4878 5.013495 TCAGACTCCACTGATTTCCTGAATT 59.987 40.000 0.00 0.00 41.21 2.17
2676 4879 4.533707 TCAGACTCCACTGATTTCCTGAAT 59.466 41.667 0.00 0.00 41.21 2.57
2677 4880 3.903714 TCAGACTCCACTGATTTCCTGAA 59.096 43.478 0.00 0.00 41.21 3.02
2678 4881 3.510459 TCAGACTCCACTGATTTCCTGA 58.490 45.455 0.00 0.00 41.21 3.86
2679 4882 3.969287 TCAGACTCCACTGATTTCCTG 57.031 47.619 0.00 0.00 41.21 3.86
2680 4883 4.982241 TTTCAGACTCCACTGATTTCCT 57.018 40.909 0.00 0.00 44.67 3.36
2681 4884 6.207417 TCATTTTTCAGACTCCACTGATTTCC 59.793 38.462 0.00 0.00 44.67 3.13
2682 4885 7.206981 TCATTTTTCAGACTCCACTGATTTC 57.793 36.000 0.00 0.00 44.67 2.17
2683 4886 7.286316 ACTTCATTTTTCAGACTCCACTGATTT 59.714 33.333 0.00 0.00 44.67 2.17
2684 4887 6.774656 ACTTCATTTTTCAGACTCCACTGATT 59.225 34.615 0.00 0.00 44.67 2.57
2685 4888 6.302269 ACTTCATTTTTCAGACTCCACTGAT 58.698 36.000 0.00 0.00 44.67 2.90
2686 4889 5.684704 ACTTCATTTTTCAGACTCCACTGA 58.315 37.500 0.00 0.00 43.83 3.41
2687 4890 7.496529 TTACTTCATTTTTCAGACTCCACTG 57.503 36.000 0.00 0.00 39.02 3.66
2688 4891 8.697507 ATTTACTTCATTTTTCAGACTCCACT 57.302 30.769 0.00 0.00 0.00 4.00
2689 4892 8.787852 AGATTTACTTCATTTTTCAGACTCCAC 58.212 33.333 0.00 0.00 0.00 4.02
2690 4893 8.924511 AGATTTACTTCATTTTTCAGACTCCA 57.075 30.769 0.00 0.00 0.00 3.86
2717 4920 8.861086 ACTCTGAAATGTTTCTCTCTAGTAACA 58.139 33.333 6.99 0.98 44.12 2.41
2718 4921 9.699703 AACTCTGAAATGTTTCTCTCTAGTAAC 57.300 33.333 6.99 0.00 38.02 2.50
2720 4923 9.698309 CAAACTCTGAAATGTTTCTCTCTAGTA 57.302 33.333 6.99 0.00 38.02 1.82
2721 4924 8.424918 TCAAACTCTGAAATGTTTCTCTCTAGT 58.575 33.333 6.99 1.70 38.02 2.57
2722 4925 8.824159 TCAAACTCTGAAATGTTTCTCTCTAG 57.176 34.615 6.99 0.00 38.02 2.43
2723 4926 9.046296 GTTCAAACTCTGAAATGTTTCTCTCTA 57.954 33.333 6.99 0.00 45.67 2.43
2724 4927 7.772757 AGTTCAAACTCTGAAATGTTTCTCTCT 59.227 33.333 6.99 0.00 45.67 3.10
2725 4928 7.924940 AGTTCAAACTCTGAAATGTTTCTCTC 58.075 34.615 6.99 0.00 45.67 3.20
2726 4929 7.872113 AGTTCAAACTCTGAAATGTTTCTCT 57.128 32.000 6.99 0.00 45.67 3.10
2741 4944 2.378038 TGCTTTGCCTGAGTTCAAACT 58.622 42.857 0.00 0.00 43.16 2.66
2742 4945 2.869233 TGCTTTGCCTGAGTTCAAAC 57.131 45.000 0.00 0.00 0.00 2.93
2743 4946 4.141981 TGAAATGCTTTGCCTGAGTTCAAA 60.142 37.500 0.00 0.00 0.00 2.69
2744 4947 3.384146 TGAAATGCTTTGCCTGAGTTCAA 59.616 39.130 0.00 0.00 0.00 2.69
2745 4948 2.957680 TGAAATGCTTTGCCTGAGTTCA 59.042 40.909 0.00 0.00 0.00 3.18
2746 4949 3.254166 TCTGAAATGCTTTGCCTGAGTTC 59.746 43.478 0.00 0.00 0.00 3.01
2747 4950 3.225104 TCTGAAATGCTTTGCCTGAGTT 58.775 40.909 0.00 0.00 0.00 3.01
2748 4951 2.867624 TCTGAAATGCTTTGCCTGAGT 58.132 42.857 0.00 0.00 0.00 3.41
2749 4952 3.442625 TCATCTGAAATGCTTTGCCTGAG 59.557 43.478 0.00 0.00 0.00 3.35
2750 4953 3.192001 GTCATCTGAAATGCTTTGCCTGA 59.808 43.478 0.00 0.00 0.00 3.86
2751 4954 3.192844 AGTCATCTGAAATGCTTTGCCTG 59.807 43.478 0.00 0.00 0.00 4.85
2752 4955 3.428532 AGTCATCTGAAATGCTTTGCCT 58.571 40.909 0.00 0.00 0.00 4.75
2753 4956 3.863142 AGTCATCTGAAATGCTTTGCC 57.137 42.857 0.00 0.00 0.00 4.52
2754 4957 6.385033 ACTAAAGTCATCTGAAATGCTTTGC 58.615 36.000 13.07 0.00 32.25 3.68
2755 4958 7.025963 GGACTAAAGTCATCTGAAATGCTTTG 58.974 38.462 11.98 8.56 46.47 2.77
2756 4959 6.716628 TGGACTAAAGTCATCTGAAATGCTTT 59.283 34.615 11.98 10.21 46.47 3.51
2757 4960 6.240894 TGGACTAAAGTCATCTGAAATGCTT 58.759 36.000 11.98 0.00 46.47 3.91
2758 4961 5.809001 TGGACTAAAGTCATCTGAAATGCT 58.191 37.500 11.98 0.00 46.47 3.79
2759 4962 6.150140 AGTTGGACTAAAGTCATCTGAAATGC 59.850 38.462 11.98 0.00 46.47 3.56
2760 4963 7.361542 CCAGTTGGACTAAAGTCATCTGAAATG 60.362 40.741 19.90 11.09 46.47 2.32
2761 4964 6.656693 CCAGTTGGACTAAAGTCATCTGAAAT 59.343 38.462 19.90 3.01 46.47 2.17
2762 4965 5.997746 CCAGTTGGACTAAAGTCATCTGAAA 59.002 40.000 19.90 3.43 46.47 2.69
2763 4966 5.551233 CCAGTTGGACTAAAGTCATCTGAA 58.449 41.667 19.90 3.44 46.47 3.02
2764 4967 4.563580 GCCAGTTGGACTAAAGTCATCTGA 60.564 45.833 19.90 0.00 46.47 3.27
2765 4968 3.686726 GCCAGTTGGACTAAAGTCATCTG 59.313 47.826 11.98 13.96 46.47 2.90
2766 4969 3.584848 AGCCAGTTGGACTAAAGTCATCT 59.415 43.478 11.98 4.31 46.47 2.90
2767 4970 3.944087 AGCCAGTTGGACTAAAGTCATC 58.056 45.455 11.98 2.28 46.47 2.92
2768 4971 4.202461 TGAAGCCAGTTGGACTAAAGTCAT 60.202 41.667 11.98 0.00 46.47 3.06
2769 4972 3.135712 TGAAGCCAGTTGGACTAAAGTCA 59.864 43.478 11.98 0.00 46.47 3.41
2770 4973 3.740115 TGAAGCCAGTTGGACTAAAGTC 58.260 45.455 1.45 1.30 44.04 3.01
2771 4974 3.391296 TCTGAAGCCAGTTGGACTAAAGT 59.609 43.478 1.45 0.00 41.16 2.66
2772 4975 4.008074 TCTGAAGCCAGTTGGACTAAAG 57.992 45.455 1.45 1.49 41.16 1.85
2773 4976 4.431416 TTCTGAAGCCAGTTGGACTAAA 57.569 40.909 1.45 0.00 41.16 1.85
2774 4977 4.134563 GTTTCTGAAGCCAGTTGGACTAA 58.865 43.478 1.45 0.00 41.16 2.24
2775 4978 3.391296 AGTTTCTGAAGCCAGTTGGACTA 59.609 43.478 1.45 0.00 41.16 2.59
2776 4979 2.173569 AGTTTCTGAAGCCAGTTGGACT 59.826 45.455 1.45 0.00 41.16 3.85
2777 4980 2.291741 CAGTTTCTGAAGCCAGTTGGAC 59.708 50.000 1.45 0.00 41.16 4.02
2778 4981 2.092429 ACAGTTTCTGAAGCCAGTTGGA 60.092 45.455 1.45 0.00 41.16 3.53
2779 4982 2.033801 CACAGTTTCTGAAGCCAGTTGG 59.966 50.000 3.70 0.00 41.16 3.77
2780 4983 2.684881 ACACAGTTTCTGAAGCCAGTTG 59.315 45.455 3.70 0.00 41.16 3.16
2781 4984 3.004752 ACACAGTTTCTGAAGCCAGTT 57.995 42.857 3.70 0.00 41.16 3.16
2782 4985 2.717639 ACACAGTTTCTGAAGCCAGT 57.282 45.000 3.70 0.00 41.16 4.00
2783 4986 5.066505 AGTTTAACACAGTTTCTGAAGCCAG 59.933 40.000 3.70 0.00 41.74 4.85
2784 4987 4.947388 AGTTTAACACAGTTTCTGAAGCCA 59.053 37.500 3.70 0.00 35.18 4.75
2785 4988 5.065988 TCAGTTTAACACAGTTTCTGAAGCC 59.934 40.000 3.70 0.00 35.18 4.35
2786 4989 6.037172 TCTCAGTTTAACACAGTTTCTGAAGC 59.963 38.462 3.70 0.00 35.18 3.86
2787 4990 7.278868 AGTCTCAGTTTAACACAGTTTCTGAAG 59.721 37.037 3.70 0.00 35.18 3.02
2788 4991 7.103641 AGTCTCAGTTTAACACAGTTTCTGAA 58.896 34.615 3.70 0.00 35.18 3.02
2789 4992 6.640518 AGTCTCAGTTTAACACAGTTTCTGA 58.359 36.000 3.70 0.00 35.18 3.27
2790 4993 6.910536 AGTCTCAGTTTAACACAGTTTCTG 57.089 37.500 0.00 0.00 37.52 3.02
2791 4994 7.783042 AGTAGTCTCAGTTTAACACAGTTTCT 58.217 34.615 0.00 0.00 0.00 2.52
2792 4995 9.525409 TTAGTAGTCTCAGTTTAACACAGTTTC 57.475 33.333 0.00 0.00 0.00 2.78
2820 5023 9.354673 GGTCCTGAATAAGATGGAAAAATCATA 57.645 33.333 0.00 0.00 0.00 2.15
2821 5024 8.063770 AGGTCCTGAATAAGATGGAAAAATCAT 58.936 33.333 0.00 0.00 0.00 2.45
2822 5025 7.413446 AGGTCCTGAATAAGATGGAAAAATCA 58.587 34.615 0.00 0.00 0.00 2.57
2823 5026 7.777440 AGAGGTCCTGAATAAGATGGAAAAATC 59.223 37.037 0.00 0.00 0.00 2.17
2824 5027 7.646884 AGAGGTCCTGAATAAGATGGAAAAAT 58.353 34.615 0.00 0.00 0.00 1.82
2825 5028 7.032598 AGAGGTCCTGAATAAGATGGAAAAA 57.967 36.000 0.00 0.00 0.00 1.94
2826 5029 6.445139 AGAGAGGTCCTGAATAAGATGGAAAA 59.555 38.462 0.00 0.00 0.00 2.29
2827 5030 5.966935 AGAGAGGTCCTGAATAAGATGGAAA 59.033 40.000 0.00 0.00 0.00 3.13
2828 5031 5.533112 AGAGAGGTCCTGAATAAGATGGAA 58.467 41.667 0.00 0.00 0.00 3.53
2829 5032 5.144100 GAGAGAGGTCCTGAATAAGATGGA 58.856 45.833 0.00 0.00 0.00 3.41
2830 5033 4.898265 TGAGAGAGGTCCTGAATAAGATGG 59.102 45.833 0.00 0.00 0.00 3.51
2831 5034 6.267242 TCATGAGAGAGGTCCTGAATAAGATG 59.733 42.308 0.00 0.00 0.00 2.90
2832 5035 6.380414 TCATGAGAGAGGTCCTGAATAAGAT 58.620 40.000 0.00 0.00 0.00 2.40
2833 5036 5.770919 TCATGAGAGAGGTCCTGAATAAGA 58.229 41.667 0.00 0.00 0.00 2.10
2878 5101 1.279271 ACATAAGGTGGAGGTCAGCAC 59.721 52.381 0.00 0.00 45.66 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.