Multiple sequence alignment - TraesCS2D01G438800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G438800 chr2D 100.000 3876 0 0 1 3876 548083447 548079572 0.000000e+00 7158.0
1 TraesCS2D01G438800 chr2D 83.254 209 28 3 1289 1491 68467435 68467228 6.610000e-43 185.0
2 TraesCS2D01G438800 chr2D 84.496 129 19 1 3097 3224 628842919 628843047 4.070000e-25 126.0
3 TraesCS2D01G438800 chr2B 92.348 2679 117 36 452 3060 655012591 655009931 0.000000e+00 3731.0
4 TraesCS2D01G438800 chr2B 88.027 451 23 17 3456 3876 655009615 655009166 4.470000e-139 505.0
5 TraesCS2D01G438800 chr2A 89.166 2843 168 50 143 2899 690927006 690929794 0.000000e+00 3415.0
6 TraesCS2D01G438800 chr2A 87.617 428 22 20 3471 3876 690930486 690930904 5.860000e-128 468.0
7 TraesCS2D01G438800 chr2A 95.631 206 7 2 2912 3115 690929849 690930054 2.890000e-86 329.0
8 TraesCS2D01G438800 chr2A 90.854 164 10 2 3303 3461 690930172 690930335 8.430000e-52 215.0
9 TraesCS2D01G438800 chr2A 90.741 108 10 0 3112 3219 43474684 43474577 1.120000e-30 145.0
10 TraesCS2D01G438800 chr2A 87.826 115 13 1 3111 3225 24058744 24058857 2.430000e-27 134.0
11 TraesCS2D01G438800 chr2A 91.667 60 4 1 3209 3267 67537657 67537598 8.930000e-12 82.4
12 TraesCS2D01G438800 chr6A 82.944 1671 226 32 1093 2745 53506405 53504776 0.000000e+00 1452.0
13 TraesCS2D01G438800 chr6A 81.725 777 113 21 2030 2798 495452169 495452924 4.250000e-174 621.0
14 TraesCS2D01G438800 chr6A 75.366 889 150 49 1094 1949 495450809 495451661 7.910000e-97 364.0
15 TraesCS2D01G438800 chr5A 78.224 1419 243 47 1237 2628 482315839 482317218 0.000000e+00 848.0
16 TraesCS2D01G438800 chr6D 84.867 826 102 16 1894 2714 43058557 43057750 0.000000e+00 811.0
17 TraesCS2D01G438800 chr6D 81.409 823 110 26 1089 1898 43070590 43069798 1.960000e-177 632.0
18 TraesCS2D01G438800 chr6D 81.548 775 123 16 2030 2798 348084334 348083574 4.250000e-174 621.0
19 TraesCS2D01G438800 chr6D 77.013 683 127 21 1280 1949 348085341 348084676 7.910000e-97 364.0
20 TraesCS2D01G438800 chr6D 92.308 52 2 2 3216 3266 307116567 307116617 5.370000e-09 73.1
21 TraesCS2D01G438800 chr5D 81.173 972 157 19 1668 2628 381979812 381980768 0.000000e+00 758.0
22 TraesCS2D01G438800 chr5B 81.070 972 161 18 1668 2628 458386674 458387633 0.000000e+00 754.0
23 TraesCS2D01G438800 chr6B 82.239 777 109 23 2030 2798 532044904 532045659 0.000000e+00 643.0
24 TraesCS2D01G438800 chr6B 81.913 481 67 9 1124 1598 103663495 103663961 4.700000e-104 388.0
25 TraesCS2D01G438800 chr6B 76.676 686 126 21 1280 1949 532044003 532044670 2.220000e-92 350.0
26 TraesCS2D01G438800 chr7D 90.598 117 10 1 3112 3228 65601659 65601774 1.860000e-33 154.0
27 TraesCS2D01G438800 chr1D 91.818 110 9 0 3111 3220 392141086 392140977 1.860000e-33 154.0
28 TraesCS2D01G438800 chr1D 93.023 43 2 1 3223 3264 433370328 433370286 1.160000e-05 62.1
29 TraesCS2D01G438800 chr4B 90.566 106 8 2 3111 3215 110240586 110240482 5.220000e-29 139.0
30 TraesCS2D01G438800 chr1B 89.908 109 9 2 3111 3219 151741781 151741887 5.220000e-29 139.0
31 TraesCS2D01G438800 chrUn 88.991 109 12 0 3111 3219 86621758 86621866 6.750000e-28 135.0
32 TraesCS2D01G438800 chr7B 88.393 112 13 0 3112 3223 452211913 452211802 6.750000e-28 135.0
33 TraesCS2D01G438800 chr7B 80.682 88 11 3 2938 3024 703956588 703956506 3.230000e-06 63.9
34 TraesCS2D01G438800 chr4D 91.667 60 3 2 3216 3274 484680110 484680168 8.930000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G438800 chr2D 548079572 548083447 3875 True 7158.00 7158 100.0000 1 3876 1 chr2D.!!$R2 3875
1 TraesCS2D01G438800 chr2B 655009166 655012591 3425 True 2118.00 3731 90.1875 452 3876 2 chr2B.!!$R1 3424
2 TraesCS2D01G438800 chr2A 690927006 690930904 3898 False 1106.75 3415 90.8170 143 3876 4 chr2A.!!$F2 3733
3 TraesCS2D01G438800 chr6A 53504776 53506405 1629 True 1452.00 1452 82.9440 1093 2745 1 chr6A.!!$R1 1652
4 TraesCS2D01G438800 chr6A 495450809 495452924 2115 False 492.50 621 78.5455 1094 2798 2 chr6A.!!$F1 1704
5 TraesCS2D01G438800 chr5A 482315839 482317218 1379 False 848.00 848 78.2240 1237 2628 1 chr5A.!!$F1 1391
6 TraesCS2D01G438800 chr6D 43057750 43058557 807 True 811.00 811 84.8670 1894 2714 1 chr6D.!!$R1 820
7 TraesCS2D01G438800 chr6D 43069798 43070590 792 True 632.00 632 81.4090 1089 1898 1 chr6D.!!$R2 809
8 TraesCS2D01G438800 chr6D 348083574 348085341 1767 True 492.50 621 79.2805 1280 2798 2 chr6D.!!$R3 1518
9 TraesCS2D01G438800 chr5D 381979812 381980768 956 False 758.00 758 81.1730 1668 2628 1 chr5D.!!$F1 960
10 TraesCS2D01G438800 chr5B 458386674 458387633 959 False 754.00 754 81.0700 1668 2628 1 chr5B.!!$F1 960
11 TraesCS2D01G438800 chr6B 532044003 532045659 1656 False 496.50 643 79.4575 1280 2798 2 chr6B.!!$F2 1518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 206 0.107897 TGCCGTGTGACAGACTTGTT 60.108 50.0 0.82 0.0 37.76 2.83 F
310 313 0.237235 TGCACGAAAGCACCGAAATC 59.763 50.0 0.00 0.0 40.11 2.17 F
418 422 0.456221 ATGCGGGAGAACGAGTACTG 59.544 55.0 0.00 0.0 35.47 2.74 F
944 1024 0.529992 CTTTCGTGTAGATCCCCGGC 60.530 60.0 0.00 0.0 0.00 6.13 F
1496 1625 0.540923 GGAGCCTGAGAACAGCATCT 59.459 55.0 0.00 0.0 42.25 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1018 1117 0.173481 CTCTTCTCCGGCGACATCAA 59.827 55.0 9.30 0.0 0.0 2.57 R
2198 2870 0.176680 CTGATCCGGACCACTTGAGG 59.823 60.0 6.12 0.0 0.0 3.86 R
2240 2912 0.834612 TGTGGAGGAGGTTGTCGTTT 59.165 50.0 0.00 0.0 0.0 3.60 R
2632 3304 1.485124 TCATAGGGAGCGAGCAAAGA 58.515 50.0 0.00 0.0 0.0 2.52 R
3343 4115 0.040958 GCCTCACGTCAACAGCAAAG 60.041 55.0 0.00 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.314541 CTGGCTGACGTTTACTAGGTT 57.685 47.619 0.00 0.00 0.00 3.50
21 22 2.993899 CTGGCTGACGTTTACTAGGTTG 59.006 50.000 0.00 0.00 0.00 3.77
22 23 2.289195 TGGCTGACGTTTACTAGGTTGG 60.289 50.000 0.00 0.00 0.00 3.77
23 24 2.344025 GCTGACGTTTACTAGGTTGGG 58.656 52.381 0.00 0.00 0.00 4.12
24 25 2.933928 GCTGACGTTTACTAGGTTGGGG 60.934 54.545 0.00 0.00 0.00 4.96
25 26 2.301009 CTGACGTTTACTAGGTTGGGGT 59.699 50.000 0.00 0.00 0.00 4.95
26 27 2.037511 TGACGTTTACTAGGTTGGGGTG 59.962 50.000 0.00 0.00 0.00 4.61
27 28 1.348696 ACGTTTACTAGGTTGGGGTGG 59.651 52.381 0.00 0.00 0.00 4.61
28 29 1.830279 GTTTACTAGGTTGGGGTGGC 58.170 55.000 0.00 0.00 0.00 5.01
29 30 1.074244 GTTTACTAGGTTGGGGTGGCA 59.926 52.381 0.00 0.00 0.00 4.92
30 31 1.676248 TTACTAGGTTGGGGTGGCAT 58.324 50.000 0.00 0.00 0.00 4.40
31 32 1.676248 TACTAGGTTGGGGTGGCATT 58.324 50.000 0.00 0.00 0.00 3.56
32 33 0.783850 ACTAGGTTGGGGTGGCATTT 59.216 50.000 0.00 0.00 0.00 2.32
33 34 1.185315 CTAGGTTGGGGTGGCATTTG 58.815 55.000 0.00 0.00 0.00 2.32
34 35 0.902516 TAGGTTGGGGTGGCATTTGC 60.903 55.000 0.00 0.00 41.14 3.68
35 36 2.216331 GGTTGGGGTGGCATTTGCT 61.216 57.895 2.12 0.00 41.70 3.91
36 37 0.902516 GGTTGGGGTGGCATTTGCTA 60.903 55.000 2.12 0.00 41.70 3.49
37 38 0.532115 GTTGGGGTGGCATTTGCTAG 59.468 55.000 2.12 0.00 41.70 3.42
40 41 3.590824 GGTGGCATTTGCTAGCGT 58.409 55.556 10.77 0.00 39.99 5.07
41 42 1.883021 GGTGGCATTTGCTAGCGTT 59.117 52.632 10.77 0.00 39.99 4.84
42 43 0.243636 GGTGGCATTTGCTAGCGTTT 59.756 50.000 10.77 0.00 39.99 3.60
43 44 1.617740 GTGGCATTTGCTAGCGTTTC 58.382 50.000 10.77 0.00 41.70 2.78
44 45 0.525761 TGGCATTTGCTAGCGTTTCC 59.474 50.000 10.77 7.95 41.70 3.13
45 46 0.525761 GGCATTTGCTAGCGTTTCCA 59.474 50.000 10.77 0.00 41.70 3.53
46 47 1.134946 GGCATTTGCTAGCGTTTCCAT 59.865 47.619 10.77 0.00 41.70 3.41
47 48 2.187707 GCATTTGCTAGCGTTTCCATG 58.812 47.619 10.77 6.72 38.21 3.66
48 49 2.159393 GCATTTGCTAGCGTTTCCATGA 60.159 45.455 10.77 0.00 38.21 3.07
49 50 3.673052 GCATTTGCTAGCGTTTCCATGAA 60.673 43.478 10.77 0.00 38.21 2.57
50 51 4.484236 CATTTGCTAGCGTTTCCATGAAA 58.516 39.130 10.77 1.86 0.00 2.69
51 52 3.829886 TTGCTAGCGTTTCCATGAAAG 57.170 42.857 10.77 0.00 31.87 2.62
52 53 2.778299 TGCTAGCGTTTCCATGAAAGT 58.222 42.857 10.77 0.00 31.87 2.66
53 54 3.146066 TGCTAGCGTTTCCATGAAAGTT 58.854 40.909 10.77 0.00 31.87 2.66
54 55 3.568007 TGCTAGCGTTTCCATGAAAGTTT 59.432 39.130 10.77 0.00 31.87 2.66
55 56 4.037446 TGCTAGCGTTTCCATGAAAGTTTT 59.963 37.500 10.77 0.00 31.87 2.43
56 57 5.239744 TGCTAGCGTTTCCATGAAAGTTTTA 59.760 36.000 10.77 0.00 31.87 1.52
57 58 5.795441 GCTAGCGTTTCCATGAAAGTTTTAG 59.205 40.000 0.00 0.00 31.87 1.85
58 59 5.767816 AGCGTTTCCATGAAAGTTTTAGT 57.232 34.783 0.00 0.00 31.87 2.24
59 60 6.144078 AGCGTTTCCATGAAAGTTTTAGTT 57.856 33.333 0.00 0.00 31.87 2.24
60 61 6.206498 AGCGTTTCCATGAAAGTTTTAGTTC 58.794 36.000 0.00 0.00 31.87 3.01
61 62 6.039382 AGCGTTTCCATGAAAGTTTTAGTTCT 59.961 34.615 0.00 0.00 31.87 3.01
62 63 6.142320 GCGTTTCCATGAAAGTTTTAGTTCTG 59.858 38.462 0.00 0.00 31.87 3.02
63 64 7.193595 CGTTTCCATGAAAGTTTTAGTTCTGT 58.806 34.615 0.00 0.00 31.87 3.41
64 65 7.165812 CGTTTCCATGAAAGTTTTAGTTCTGTG 59.834 37.037 0.00 0.00 31.87 3.66
65 66 7.639113 TTCCATGAAAGTTTTAGTTCTGTGT 57.361 32.000 0.00 0.00 0.00 3.72
66 67 7.026631 TCCATGAAAGTTTTAGTTCTGTGTG 57.973 36.000 0.00 0.00 0.00 3.82
67 68 6.039270 TCCATGAAAGTTTTAGTTCTGTGTGG 59.961 38.462 0.00 0.00 0.00 4.17
68 69 5.828299 TGAAAGTTTTAGTTCTGTGTGGG 57.172 39.130 0.00 0.00 0.00 4.61
69 70 4.642885 TGAAAGTTTTAGTTCTGTGTGGGG 59.357 41.667 0.00 0.00 0.00 4.96
70 71 3.945640 AGTTTTAGTTCTGTGTGGGGT 57.054 42.857 0.00 0.00 0.00 4.95
71 72 4.245251 AGTTTTAGTTCTGTGTGGGGTT 57.755 40.909 0.00 0.00 0.00 4.11
72 73 3.951680 AGTTTTAGTTCTGTGTGGGGTTG 59.048 43.478 0.00 0.00 0.00 3.77
73 74 3.935818 TTTAGTTCTGTGTGGGGTTGA 57.064 42.857 0.00 0.00 0.00 3.18
74 75 3.935818 TTAGTTCTGTGTGGGGTTGAA 57.064 42.857 0.00 0.00 0.00 2.69
75 76 2.348411 AGTTCTGTGTGGGGTTGAAG 57.652 50.000 0.00 0.00 0.00 3.02
76 77 1.843851 AGTTCTGTGTGGGGTTGAAGA 59.156 47.619 0.00 0.00 0.00 2.87
77 78 2.241176 AGTTCTGTGTGGGGTTGAAGAA 59.759 45.455 0.00 0.00 0.00 2.52
78 79 3.020984 GTTCTGTGTGGGGTTGAAGAAA 58.979 45.455 0.00 0.00 0.00 2.52
79 80 2.650322 TCTGTGTGGGGTTGAAGAAAC 58.350 47.619 0.00 0.00 38.12 2.78
80 81 2.241176 TCTGTGTGGGGTTGAAGAAACT 59.759 45.455 0.00 0.00 38.92 2.66
81 82 2.358898 CTGTGTGGGGTTGAAGAAACTG 59.641 50.000 0.00 0.00 38.92 3.16
82 83 2.291282 TGTGTGGGGTTGAAGAAACTGT 60.291 45.455 0.00 0.00 38.92 3.55
83 84 2.357952 GTGTGGGGTTGAAGAAACTGTC 59.642 50.000 0.00 0.00 38.92 3.51
84 85 2.025793 TGTGGGGTTGAAGAAACTGTCA 60.026 45.455 0.00 0.00 38.92 3.58
85 86 2.357952 GTGGGGTTGAAGAAACTGTCAC 59.642 50.000 0.00 0.00 38.92 3.67
86 87 1.954382 GGGGTTGAAGAAACTGTCACC 59.046 52.381 0.00 0.00 38.92 4.02
87 88 2.650322 GGGTTGAAGAAACTGTCACCA 58.350 47.619 0.00 0.00 38.92 4.17
88 89 2.357952 GGGTTGAAGAAACTGTCACCAC 59.642 50.000 0.00 0.00 38.92 4.16
89 90 2.357952 GGTTGAAGAAACTGTCACCACC 59.642 50.000 0.00 0.00 38.92 4.61
90 91 1.948104 TGAAGAAACTGTCACCACCG 58.052 50.000 0.00 0.00 0.00 4.94
91 92 1.483004 TGAAGAAACTGTCACCACCGA 59.517 47.619 0.00 0.00 0.00 4.69
92 93 2.104111 TGAAGAAACTGTCACCACCGAT 59.896 45.455 0.00 0.00 0.00 4.18
93 94 3.322541 TGAAGAAACTGTCACCACCGATA 59.677 43.478 0.00 0.00 0.00 2.92
94 95 3.594603 AGAAACTGTCACCACCGATAG 57.405 47.619 0.00 0.00 0.00 2.08
95 96 3.162666 AGAAACTGTCACCACCGATAGA 58.837 45.455 0.00 0.00 39.76 1.98
96 97 3.769844 AGAAACTGTCACCACCGATAGAT 59.230 43.478 0.00 0.00 39.76 1.98
97 98 4.954202 AGAAACTGTCACCACCGATAGATA 59.046 41.667 0.00 0.00 39.76 1.98
98 99 4.920640 AACTGTCACCACCGATAGATAG 57.079 45.455 0.00 0.00 39.76 2.08
99 100 3.899726 ACTGTCACCACCGATAGATAGT 58.100 45.455 0.00 0.00 39.76 2.12
100 101 3.884091 ACTGTCACCACCGATAGATAGTC 59.116 47.826 0.00 0.00 39.76 2.59
101 102 3.883489 CTGTCACCACCGATAGATAGTCA 59.117 47.826 0.00 0.00 39.76 3.41
102 103 3.883489 TGTCACCACCGATAGATAGTCAG 59.117 47.826 0.00 0.00 39.76 3.51
103 104 4.135306 GTCACCACCGATAGATAGTCAGA 58.865 47.826 0.00 0.00 39.76 3.27
104 105 4.762765 GTCACCACCGATAGATAGTCAGAT 59.237 45.833 0.00 0.00 39.76 2.90
105 106 5.938710 GTCACCACCGATAGATAGTCAGATA 59.061 44.000 0.00 0.00 39.76 1.98
106 107 5.938710 TCACCACCGATAGATAGTCAGATAC 59.061 44.000 0.00 0.00 39.76 2.24
107 108 5.705905 CACCACCGATAGATAGTCAGATACA 59.294 44.000 0.00 0.00 39.76 2.29
108 109 6.206829 CACCACCGATAGATAGTCAGATACAA 59.793 42.308 0.00 0.00 39.76 2.41
109 110 6.207025 ACCACCGATAGATAGTCAGATACAAC 59.793 42.308 0.00 0.00 39.76 3.32
110 111 6.431543 CCACCGATAGATAGTCAGATACAACT 59.568 42.308 0.00 0.00 39.76 3.16
111 112 7.606839 CCACCGATAGATAGTCAGATACAACTA 59.393 40.741 0.00 0.00 39.76 2.24
112 113 9.000486 CACCGATAGATAGTCAGATACAACTAA 58.000 37.037 0.00 0.00 39.76 2.24
113 114 9.570468 ACCGATAGATAGTCAGATACAACTAAA 57.430 33.333 0.00 0.00 39.76 1.85
118 119 8.894768 AGATAGTCAGATACAACTAAAATGGC 57.105 34.615 0.00 0.00 32.08 4.40
119 120 7.934120 AGATAGTCAGATACAACTAAAATGGCC 59.066 37.037 0.00 0.00 32.08 5.36
120 121 5.815581 AGTCAGATACAACTAAAATGGCCA 58.184 37.500 8.56 8.56 0.00 5.36
121 122 5.882557 AGTCAGATACAACTAAAATGGCCAG 59.117 40.000 13.05 0.00 0.00 4.85
122 123 4.640201 TCAGATACAACTAAAATGGCCAGC 59.360 41.667 13.05 0.00 0.00 4.85
123 124 4.398988 CAGATACAACTAAAATGGCCAGCA 59.601 41.667 13.05 0.00 0.00 4.41
124 125 5.016173 AGATACAACTAAAATGGCCAGCAA 58.984 37.500 13.05 0.00 0.00 3.91
125 126 5.480073 AGATACAACTAAAATGGCCAGCAAA 59.520 36.000 13.05 0.00 0.00 3.68
126 127 4.414337 ACAACTAAAATGGCCAGCAAAA 57.586 36.364 13.05 0.00 0.00 2.44
127 128 4.775236 ACAACTAAAATGGCCAGCAAAAA 58.225 34.783 13.05 0.00 0.00 1.94
128 129 4.574421 ACAACTAAAATGGCCAGCAAAAAC 59.426 37.500 13.05 0.00 0.00 2.43
129 130 4.414337 ACTAAAATGGCCAGCAAAAACA 57.586 36.364 13.05 0.00 0.00 2.83
130 131 4.971939 ACTAAAATGGCCAGCAAAAACAT 58.028 34.783 13.05 0.00 0.00 2.71
131 132 5.375773 ACTAAAATGGCCAGCAAAAACATT 58.624 33.333 13.05 0.00 33.55 2.71
132 133 5.827267 ACTAAAATGGCCAGCAAAAACATTT 59.173 32.000 13.05 0.00 41.84 2.32
133 134 6.995091 ACTAAAATGGCCAGCAAAAACATTTA 59.005 30.769 13.05 4.79 39.89 1.40
134 135 6.705863 AAAATGGCCAGCAAAAACATTTAA 57.294 29.167 13.05 0.00 39.89 1.52
135 136 6.705863 AAATGGCCAGCAAAAACATTTAAA 57.294 29.167 13.05 0.00 39.26 1.52
136 137 6.705863 AATGGCCAGCAAAAACATTTAAAA 57.294 29.167 13.05 0.00 0.00 1.52
137 138 6.897706 ATGGCCAGCAAAAACATTTAAAAT 57.102 29.167 13.05 0.00 0.00 1.82
138 139 6.311055 TGGCCAGCAAAAACATTTAAAATC 57.689 33.333 0.00 0.00 0.00 2.17
139 140 6.060788 TGGCCAGCAAAAACATTTAAAATCT 58.939 32.000 0.00 0.00 0.00 2.40
140 141 6.204495 TGGCCAGCAAAAACATTTAAAATCTC 59.796 34.615 0.00 0.00 0.00 2.75
141 142 6.298853 GCCAGCAAAAACATTTAAAATCTCG 58.701 36.000 0.00 0.00 0.00 4.04
148 149 4.361451 ACATTTAAAATCTCGCAGCCAG 57.639 40.909 0.00 0.00 0.00 4.85
159 160 2.805099 CTCGCAGCCAGATAAGATTTCC 59.195 50.000 0.00 0.00 0.00 3.13
160 161 2.170397 TCGCAGCCAGATAAGATTTCCA 59.830 45.455 0.00 0.00 0.00 3.53
162 163 3.567164 CGCAGCCAGATAAGATTTCCAAT 59.433 43.478 0.00 0.00 0.00 3.16
168 171 8.139989 CAGCCAGATAAGATTTCCAATAAAAGG 58.860 37.037 0.00 0.00 0.00 3.11
170 173 8.864087 GCCAGATAAGATTTCCAATAAAAGGAT 58.136 33.333 0.00 0.00 34.56 3.24
191 194 4.576216 TTACACATGAATTTTGCCGTGT 57.424 36.364 0.00 0.00 40.46 4.49
203 206 0.107897 TGCCGTGTGACAGACTTGTT 60.108 50.000 0.82 0.00 37.76 2.83
206 209 1.860950 CCGTGTGACAGACTTGTTCAG 59.139 52.381 0.82 0.00 37.76 3.02
211 214 3.118629 TGTGACAGACTTGTTCAGCTCTT 60.119 43.478 0.00 0.00 37.76 2.85
212 215 3.247173 GTGACAGACTTGTTCAGCTCTTG 59.753 47.826 0.00 0.00 37.76 3.02
216 219 0.475906 ACTTGTTCAGCTCTTGGCCT 59.524 50.000 3.32 0.00 43.05 5.19
222 225 0.322975 TCAGCTCTTGGCCTGAAGTC 59.677 55.000 3.32 0.00 43.05 3.01
226 229 0.390472 CTCTTGGCCTGAAGTCGTCC 60.390 60.000 3.32 0.00 0.00 4.79
238 241 0.529378 AGTCGTCCCGCGTTTCTATT 59.471 50.000 4.92 0.00 42.13 1.73
241 244 0.523968 CGTCCCGCGTTTCTATTCGA 60.524 55.000 4.92 0.00 35.54 3.71
248 251 3.173599 CGCGTTTCTATTCGACCTAACA 58.826 45.455 0.00 0.00 0.00 2.41
262 265 4.201970 CGACCTAACAAACACACCACAAAT 60.202 41.667 0.00 0.00 0.00 2.32
263 266 5.257082 ACCTAACAAACACACCACAAATC 57.743 39.130 0.00 0.00 0.00 2.17
265 268 4.098654 CCTAACAAACACACCACAAATCCA 59.901 41.667 0.00 0.00 0.00 3.41
273 276 2.159028 ACACCACAAATCCAAAAACCGG 60.159 45.455 0.00 0.00 0.00 5.28
274 277 1.414550 ACCACAAATCCAAAAACCGGG 59.585 47.619 6.32 0.00 0.00 5.73
280 283 3.973206 AATCCAAAAACCGGGGATTTC 57.027 42.857 14.22 0.00 46.51 2.17
281 284 2.383442 TCCAAAAACCGGGGATTTCA 57.617 45.000 6.32 0.00 0.00 2.69
284 287 2.547007 CCAAAAACCGGGGATTTCACAC 60.547 50.000 6.32 0.00 0.00 3.82
285 288 1.334160 AAAACCGGGGATTTCACACC 58.666 50.000 6.32 0.00 0.00 4.16
295 298 3.498018 GGGATTTCACACCAATTTTGCAC 59.502 43.478 0.00 0.00 0.00 4.57
300 303 3.443037 TCACACCAATTTTGCACGAAAG 58.557 40.909 0.00 0.00 0.00 2.62
303 306 2.033832 CACCAATTTTGCACGAAAGCAC 60.034 45.455 0.00 0.00 45.61 4.40
304 307 1.526464 CCAATTTTGCACGAAAGCACC 59.474 47.619 0.00 0.00 45.61 5.01
305 308 1.189884 CAATTTTGCACGAAAGCACCG 59.810 47.619 0.00 0.00 45.61 4.94
310 313 0.237235 TGCACGAAAGCACCGAAATC 59.763 50.000 0.00 0.00 40.11 2.17
313 316 1.128692 CACGAAAGCACCGAAATCCTC 59.871 52.381 0.00 0.00 0.00 3.71
316 319 2.675317 CGAAAGCACCGAAATCCTCTCT 60.675 50.000 0.00 0.00 0.00 3.10
318 321 1.859302 AGCACCGAAATCCTCTCTCT 58.141 50.000 0.00 0.00 0.00 3.10
319 322 1.754226 AGCACCGAAATCCTCTCTCTC 59.246 52.381 0.00 0.00 0.00 3.20
320 323 1.478510 GCACCGAAATCCTCTCTCTCA 59.521 52.381 0.00 0.00 0.00 3.27
321 324 2.737039 GCACCGAAATCCTCTCTCTCAC 60.737 54.545 0.00 0.00 0.00 3.51
322 325 1.746220 ACCGAAATCCTCTCTCTCACG 59.254 52.381 0.00 0.00 0.00 4.35
323 326 2.017782 CCGAAATCCTCTCTCTCACGA 58.982 52.381 0.00 0.00 0.00 4.35
324 327 2.423892 CCGAAATCCTCTCTCTCACGAA 59.576 50.000 0.00 0.00 0.00 3.85
325 328 3.119459 CCGAAATCCTCTCTCTCACGAAA 60.119 47.826 0.00 0.00 0.00 3.46
326 329 4.440802 CCGAAATCCTCTCTCTCACGAAAT 60.441 45.833 0.00 0.00 0.00 2.17
327 330 4.737765 CGAAATCCTCTCTCTCACGAAATC 59.262 45.833 0.00 0.00 0.00 2.17
328 331 5.449862 CGAAATCCTCTCTCTCACGAAATCT 60.450 44.000 0.00 0.00 0.00 2.40
329 332 4.916983 ATCCTCTCTCTCACGAAATCTG 57.083 45.455 0.00 0.00 0.00 2.90
331 334 4.336280 TCCTCTCTCTCACGAAATCTGAA 58.664 43.478 0.00 0.00 0.00 3.02
332 335 4.767409 TCCTCTCTCTCACGAAATCTGAAA 59.233 41.667 0.00 0.00 0.00 2.69
333 336 5.243954 TCCTCTCTCTCACGAAATCTGAAAA 59.756 40.000 0.00 0.00 0.00 2.29
381 384 0.736325 AACCGAATTCCGCGAGACAG 60.736 55.000 8.23 0.00 36.84 3.51
396 400 3.786635 GAGACAGTGCTCGTATGGAATT 58.213 45.455 0.00 0.00 0.00 2.17
416 420 0.527817 CCATGCGGGAGAACGAGTAC 60.528 60.000 0.00 0.00 40.01 2.73
418 422 0.456221 ATGCGGGAGAACGAGTACTG 59.544 55.000 0.00 0.00 35.47 2.74
420 424 1.880894 CGGGAGAACGAGTACTGCA 59.119 57.895 0.00 0.00 35.47 4.41
446 450 4.179579 GGCGTCCGCTGATTTGCC 62.180 66.667 11.82 3.89 41.60 4.52
450 454 2.031919 TCCGCTGATTTGCCGTGT 59.968 55.556 0.00 0.00 0.00 4.49
451 455 2.032634 TCCGCTGATTTGCCGTGTC 61.033 57.895 0.00 0.00 0.00 3.67
453 457 2.480555 GCTGATTTGCCGTGTCCG 59.519 61.111 0.00 0.00 0.00 4.79
454 458 2.325082 GCTGATTTGCCGTGTCCGT 61.325 57.895 0.00 0.00 0.00 4.69
455 459 1.497278 CTGATTTGCCGTGTCCGTG 59.503 57.895 0.00 0.00 0.00 4.94
456 460 2.175811 GATTTGCCGTGTCCGTGC 59.824 61.111 0.00 0.00 0.00 5.34
457 461 3.645157 GATTTGCCGTGTCCGTGCG 62.645 63.158 0.00 0.00 34.36 5.34
477 481 4.143333 CTACGAGGGTGCCCGTGG 62.143 72.222 0.98 0.00 41.95 4.94
500 504 1.017701 CCAGAGAAAACGCGGTACCC 61.018 60.000 12.47 0.00 0.00 3.69
604 614 1.910580 GATCCGCCAAGAACTCCCCA 61.911 60.000 0.00 0.00 0.00 4.96
776 836 2.128035 GGTTACTGATTGCGATCTCGG 58.872 52.381 15.08 7.79 40.23 4.63
787 847 1.861575 GCGATCTCGGTTCTTGATTCC 59.138 52.381 1.34 0.00 40.23 3.01
814 874 2.296480 CGCTGCTAATCTCGCCGTC 61.296 63.158 0.00 0.00 0.00 4.79
944 1024 0.529992 CTTTCGTGTAGATCCCCGGC 60.530 60.000 0.00 0.00 0.00 6.13
1018 1117 2.283529 ATGGACGCAGGTTCCGACT 61.284 57.895 0.00 0.00 0.00 4.18
1190 1295 2.497675 TCAAGTGCTATGTGAGTCCTCC 59.502 50.000 0.00 0.00 0.00 4.30
1196 1301 1.974236 CTATGTGAGTCCTCCATCCCC 59.026 57.143 2.77 0.00 0.00 4.81
1203 1313 2.044450 CCTCCATCCCCTTCCCCA 59.956 66.667 0.00 0.00 0.00 4.96
1221 1333 1.338674 CCATTTCGCCTGTGTCCTGTA 60.339 52.381 0.00 0.00 0.00 2.74
1227 1339 1.296715 CCTGTGTCCTGTACCTGCC 59.703 63.158 0.00 0.00 0.00 4.85
1306 1426 2.670148 GGGCGACAGGTTCATCCCT 61.670 63.158 0.00 0.00 34.97 4.20
1474 1603 3.294493 GCCTTCCGCAACAAGCCA 61.294 61.111 0.00 0.00 41.38 4.75
1496 1625 0.540923 GGAGCCTGAGAACAGCATCT 59.459 55.000 0.00 0.00 42.25 2.90
1570 1699 1.001268 CGTCGATACATCCCTCAGGTG 60.001 57.143 0.00 0.00 0.00 4.00
1589 1720 3.115556 GGCACGCTTGGTTTGTGA 58.884 55.556 0.00 0.00 35.66 3.58
1598 1729 0.950836 TTGGTTTGTGATGGTGCTCG 59.049 50.000 0.00 0.00 0.00 5.03
1607 1741 1.339535 TGATGGTGCTCGCATTGGTTA 60.340 47.619 0.00 0.00 0.00 2.85
1629 1769 1.879380 TGCAGTTGTAGTGGTGATTGC 59.121 47.619 0.00 0.00 0.00 3.56
1677 1826 0.674895 GAAACCTGATGCAGTCCGCT 60.675 55.000 0.00 0.00 43.06 5.52
1680 1829 1.145598 CCTGATGCAGTCCGCTGAT 59.854 57.895 0.00 0.00 45.28 2.90
1779 1928 3.216292 GCACTGGGCAACACGGTT 61.216 61.111 0.00 0.00 43.97 4.44
1958 2107 3.400255 GACTGGTTGGTACTTCTTGACC 58.600 50.000 0.00 0.00 36.17 4.02
2026 2693 7.008992 GCTTTTTAGTTGCTGATCATGATTCAC 59.991 37.037 10.14 2.90 0.00 3.18
2053 2725 1.227943 TGAGGACACTGCAAGGTGC 60.228 57.895 6.03 3.61 45.29 5.01
2198 2870 4.314440 TCGCAGGAGGTGTGTGGC 62.314 66.667 0.00 0.00 37.93 5.01
2630 3302 4.345257 GTCCTCTTCATGGCTCAGGTAATA 59.655 45.833 0.00 0.00 0.00 0.98
2631 3303 4.968719 TCCTCTTCATGGCTCAGGTAATAA 59.031 41.667 0.00 0.00 0.00 1.40
2632 3304 5.608437 TCCTCTTCATGGCTCAGGTAATAAT 59.392 40.000 0.00 0.00 0.00 1.28
2651 3323 1.485124 TCTTTGCTCGCTCCCTATGA 58.515 50.000 0.00 0.00 0.00 2.15
2652 3324 1.831106 TCTTTGCTCGCTCCCTATGAA 59.169 47.619 0.00 0.00 0.00 2.57
2653 3325 2.435805 TCTTTGCTCGCTCCCTATGAAT 59.564 45.455 0.00 0.00 0.00 2.57
2654 3326 2.245159 TTGCTCGCTCCCTATGAATG 57.755 50.000 0.00 0.00 0.00 2.67
2794 3482 1.372087 CCCTGCGCTTCTGGAATGTC 61.372 60.000 9.73 0.00 35.98 3.06
2821 3509 0.108424 ATGCTCCGAAGTCTGCAGTC 60.108 55.000 14.67 8.44 38.87 3.51
2831 3519 3.399440 AGTCTGCAGTCAAAGAGAAGG 57.601 47.619 14.67 0.00 0.00 3.46
2834 3522 2.899900 TCTGCAGTCAAAGAGAAGGCTA 59.100 45.455 14.67 0.00 0.00 3.93
2836 3524 2.289694 TGCAGTCAAAGAGAAGGCTACC 60.290 50.000 0.00 0.00 0.00 3.18
2869 3557 3.814842 TGTTCAACAGCTACAATCACCTG 59.185 43.478 0.00 0.00 0.00 4.00
3078 3810 9.337396 GATATATAGTACTCTCTCTGACCCATG 57.663 40.741 0.00 0.00 0.00 3.66
3079 3811 3.748645 AGTACTCTCTCTGACCCATGT 57.251 47.619 0.00 0.00 0.00 3.21
3121 3853 3.121738 ACAACTTTTGTACTCCCTCCG 57.878 47.619 0.00 0.00 43.27 4.63
3122 3854 2.436911 ACAACTTTTGTACTCCCTCCGT 59.563 45.455 0.00 0.00 43.27 4.69
3123 3855 3.118149 ACAACTTTTGTACTCCCTCCGTT 60.118 43.478 0.00 0.00 43.27 4.44
3124 3856 3.397849 ACTTTTGTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
3125 3857 2.038164 ACTTTTGTACTCCCTCCGTTCC 59.962 50.000 0.00 0.00 0.00 3.62
3126 3858 2.019807 TTTGTACTCCCTCCGTTCCT 57.980 50.000 0.00 0.00 0.00 3.36
3127 3859 2.019807 TTGTACTCCCTCCGTTCCTT 57.980 50.000 0.00 0.00 0.00 3.36
3128 3860 2.019807 TGTACTCCCTCCGTTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11
3129 3861 2.332117 TGTACTCCCTCCGTTCCTTTT 58.668 47.619 0.00 0.00 0.00 2.27
3130 3862 2.707257 TGTACTCCCTCCGTTCCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
3131 3863 3.903090 TGTACTCCCTCCGTTCCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
3132 3864 3.413846 ACTCCCTCCGTTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
3133 3865 2.707257 ACTCCCTCCGTTCCTTTTTACA 59.293 45.455 0.00 0.00 0.00 2.41
3134 3866 3.136992 ACTCCCTCCGTTCCTTTTTACAA 59.863 43.478 0.00 0.00 0.00 2.41
3135 3867 3.746940 TCCCTCCGTTCCTTTTTACAAG 58.253 45.455 0.00 0.00 0.00 3.16
3136 3868 3.391955 TCCCTCCGTTCCTTTTTACAAGA 59.608 43.478 0.00 0.00 0.00 3.02
3137 3869 4.042435 TCCCTCCGTTCCTTTTTACAAGAT 59.958 41.667 0.00 0.00 0.00 2.40
3138 3870 4.156008 CCCTCCGTTCCTTTTTACAAGATG 59.844 45.833 0.00 0.00 0.00 2.90
3139 3871 4.760204 CCTCCGTTCCTTTTTACAAGATGT 59.240 41.667 0.00 0.00 0.00 3.06
3140 3872 5.240844 CCTCCGTTCCTTTTTACAAGATGTT 59.759 40.000 0.00 0.00 0.00 2.71
3141 3873 6.238925 CCTCCGTTCCTTTTTACAAGATGTTT 60.239 38.462 0.00 0.00 0.00 2.83
3142 3874 7.102847 TCCGTTCCTTTTTACAAGATGTTTT 57.897 32.000 0.00 0.00 0.00 2.43
3143 3875 8.223177 TCCGTTCCTTTTTACAAGATGTTTTA 57.777 30.769 0.00 0.00 0.00 1.52
3144 3876 8.347035 TCCGTTCCTTTTTACAAGATGTTTTAG 58.653 33.333 0.00 0.00 0.00 1.85
3145 3877 8.347035 CCGTTCCTTTTTACAAGATGTTTTAGA 58.653 33.333 0.00 0.00 0.00 2.10
3146 3878 9.166126 CGTTCCTTTTTACAAGATGTTTTAGAC 57.834 33.333 0.00 0.00 0.00 2.59
3149 3881 8.349983 TCCTTTTTACAAGATGTTTTAGACAGC 58.650 33.333 0.00 0.00 44.92 4.40
3158 3890 6.072112 GATGTTTTAGACAGCTGGTTTTGA 57.928 37.500 19.93 0.00 42.62 2.69
3159 3891 5.906113 TGTTTTAGACAGCTGGTTTTGAA 57.094 34.783 19.93 2.70 33.40 2.69
3160 3892 5.646606 TGTTTTAGACAGCTGGTTTTGAAC 58.353 37.500 19.93 14.76 33.40 3.18
3161 3893 5.417580 TGTTTTAGACAGCTGGTTTTGAACT 59.582 36.000 19.93 6.45 33.40 3.01
3162 3894 5.499139 TTTAGACAGCTGGTTTTGAACTG 57.501 39.130 19.93 0.00 0.00 3.16
3163 3895 3.004752 AGACAGCTGGTTTTGAACTGT 57.995 42.857 19.93 0.00 43.93 3.55
3164 3896 3.356290 AGACAGCTGGTTTTGAACTGTT 58.644 40.909 19.93 0.00 41.45 3.16
3165 3897 3.763897 AGACAGCTGGTTTTGAACTGTTT 59.236 39.130 19.93 0.00 41.45 2.83
3166 3898 4.220602 AGACAGCTGGTTTTGAACTGTTTT 59.779 37.500 19.93 0.00 41.45 2.43
3167 3899 4.244862 ACAGCTGGTTTTGAACTGTTTTG 58.755 39.130 19.93 0.00 38.38 2.44
3168 3900 3.618150 CAGCTGGTTTTGAACTGTTTTGG 59.382 43.478 5.57 0.00 0.00 3.28
3169 3901 2.935849 GCTGGTTTTGAACTGTTTTGGG 59.064 45.455 0.00 0.00 0.00 4.12
3170 3902 3.368948 GCTGGTTTTGAACTGTTTTGGGA 60.369 43.478 0.00 0.00 0.00 4.37
3171 3903 4.432712 CTGGTTTTGAACTGTTTTGGGAG 58.567 43.478 0.00 0.00 0.00 4.30
3172 3904 3.194861 GGTTTTGAACTGTTTTGGGAGC 58.805 45.455 0.00 0.00 0.00 4.70
3173 3905 3.118775 GGTTTTGAACTGTTTTGGGAGCT 60.119 43.478 0.00 0.00 0.00 4.09
3174 3906 3.799281 TTTGAACTGTTTTGGGAGCTG 57.201 42.857 0.00 0.00 0.00 4.24
3175 3907 2.435372 TGAACTGTTTTGGGAGCTGT 57.565 45.000 0.00 0.00 0.00 4.40
3176 3908 2.733956 TGAACTGTTTTGGGAGCTGTT 58.266 42.857 0.00 0.00 0.00 3.16
3177 3909 3.096092 TGAACTGTTTTGGGAGCTGTTT 58.904 40.909 0.00 0.00 0.00 2.83
3178 3910 3.119173 TGAACTGTTTTGGGAGCTGTTTG 60.119 43.478 0.00 0.00 0.00 2.93
3179 3911 2.733956 ACTGTTTTGGGAGCTGTTTGA 58.266 42.857 0.00 0.00 0.00 2.69
3180 3912 3.096092 ACTGTTTTGGGAGCTGTTTGAA 58.904 40.909 0.00 0.00 0.00 2.69
3181 3913 3.119137 ACTGTTTTGGGAGCTGTTTGAAC 60.119 43.478 0.00 0.00 0.00 3.18
3182 3914 3.096092 TGTTTTGGGAGCTGTTTGAACT 58.904 40.909 0.00 0.00 0.00 3.01
3183 3915 3.513515 TGTTTTGGGAGCTGTTTGAACTT 59.486 39.130 0.00 0.00 0.00 2.66
3184 3916 4.020662 TGTTTTGGGAGCTGTTTGAACTTT 60.021 37.500 0.00 0.00 0.00 2.66
3185 3917 4.385358 TTTGGGAGCTGTTTGAACTTTC 57.615 40.909 0.00 0.00 0.00 2.62
3186 3918 3.297134 TGGGAGCTGTTTGAACTTTCT 57.703 42.857 0.00 0.00 0.00 2.52
3187 3919 4.431416 TGGGAGCTGTTTGAACTTTCTA 57.569 40.909 0.00 0.00 0.00 2.10
3188 3920 4.787551 TGGGAGCTGTTTGAACTTTCTAA 58.212 39.130 0.00 0.00 0.00 2.10
3189 3921 5.197451 TGGGAGCTGTTTGAACTTTCTAAA 58.803 37.500 0.00 0.00 0.00 1.85
3190 3922 5.654650 TGGGAGCTGTTTGAACTTTCTAAAA 59.345 36.000 0.00 0.00 0.00 1.52
3191 3923 5.977725 GGGAGCTGTTTGAACTTTCTAAAAC 59.022 40.000 0.00 0.00 33.98 2.43
3192 3924 5.681543 GGAGCTGTTTGAACTTTCTAAAACG 59.318 40.000 0.00 0.00 35.71 3.60
3193 3925 6.190954 AGCTGTTTGAACTTTCTAAAACGT 57.809 33.333 0.00 0.00 35.71 3.99
3194 3926 6.255950 AGCTGTTTGAACTTTCTAAAACGTC 58.744 36.000 0.00 0.00 35.71 4.34
3195 3927 6.093633 AGCTGTTTGAACTTTCTAAAACGTCT 59.906 34.615 0.00 0.00 35.71 4.18
3196 3928 6.745907 GCTGTTTGAACTTTCTAAAACGTCTT 59.254 34.615 0.00 0.00 35.71 3.01
3197 3929 7.906527 GCTGTTTGAACTTTCTAAAACGTCTTA 59.093 33.333 0.00 0.00 35.71 2.10
3198 3930 9.931210 CTGTTTGAACTTTCTAAAACGTCTTAT 57.069 29.630 0.00 0.00 35.71 1.73
3213 3945 7.653767 AACGTCTTATAAAAGTGAACAGAGG 57.346 36.000 0.00 0.00 34.13 3.69
3214 3946 6.164176 ACGTCTTATAAAAGTGAACAGAGGG 58.836 40.000 0.00 0.00 34.13 4.30
3215 3947 6.014840 ACGTCTTATAAAAGTGAACAGAGGGA 60.015 38.462 0.00 0.00 34.13 4.20
3216 3948 6.531948 CGTCTTATAAAAGTGAACAGAGGGAG 59.468 42.308 0.00 0.00 34.13 4.30
3217 3949 7.387643 GTCTTATAAAAGTGAACAGAGGGAGT 58.612 38.462 0.00 0.00 34.13 3.85
3218 3950 8.529476 GTCTTATAAAAGTGAACAGAGGGAGTA 58.471 37.037 0.00 0.00 34.13 2.59
3219 3951 8.529476 TCTTATAAAAGTGAACAGAGGGAGTAC 58.471 37.037 0.00 0.00 34.13 2.73
3220 3952 6.936968 ATAAAAGTGAACAGAGGGAGTACT 57.063 37.500 0.00 0.00 0.00 2.73
3256 3988 7.748691 AAAGCTGCAACAATTAATTTGGATT 57.251 28.000 1.02 0.00 39.80 3.01
3267 4000 9.492730 ACAATTAATTTGGATTGAGGGAGTATT 57.507 29.630 12.85 0.00 39.80 1.89
3295 4043 7.757941 TTTATGGTCTCAAAATCATGTGTCA 57.242 32.000 0.00 0.00 0.00 3.58
3296 4044 7.757941 TTATGGTCTCAAAATCATGTGTCAA 57.242 32.000 0.00 0.00 0.00 3.18
3297 4045 5.437289 TGGTCTCAAAATCATGTGTCAAC 57.563 39.130 0.00 0.00 0.00 3.18
3298 4046 4.886489 TGGTCTCAAAATCATGTGTCAACA 59.114 37.500 0.00 0.00 41.58 3.33
3299 4047 5.359292 TGGTCTCAAAATCATGTGTCAACAA 59.641 36.000 0.00 0.00 40.46 2.83
3300 4048 5.687285 GGTCTCAAAATCATGTGTCAACAAC 59.313 40.000 0.00 0.00 40.46 3.32
3301 4049 6.460123 GGTCTCAAAATCATGTGTCAACAACT 60.460 38.462 0.00 0.00 40.46 3.16
3343 4115 2.229792 TGATGTTTCCTGTTGACTGGC 58.770 47.619 2.47 0.00 35.24 4.85
3388 4160 0.884514 GGAGGTGCTTCTCTTTTGGC 59.115 55.000 6.79 0.00 34.39 4.52
3429 4203 4.929479 TGAAGCCACCACCACTATTTTAT 58.071 39.130 0.00 0.00 0.00 1.40
3430 4204 4.704540 TGAAGCCACCACCACTATTTTATG 59.295 41.667 0.00 0.00 0.00 1.90
3457 4237 6.127168 TGTTATTCTTCTCGGGTCATACATGT 60.127 38.462 2.69 2.69 0.00 3.21
3461 4241 3.021177 TCTCGGGTCATACATGTACCA 57.979 47.619 16.32 0.56 32.90 3.25
3462 4242 3.367321 TCTCGGGTCATACATGTACCAA 58.633 45.455 16.32 4.96 32.90 3.67
3466 4334 3.467803 GGGTCATACATGTACCAAGCTC 58.532 50.000 16.32 0.02 32.90 4.09
3524 4456 4.630894 TTCAGTCAAAGAAATGTGCGTT 57.369 36.364 0.00 0.00 0.00 4.84
3537 4469 0.248458 GTGCGTTGGTTGGTTCAGTG 60.248 55.000 0.00 0.00 0.00 3.66
3581 4525 3.120199 CCGATCAGATCACAACCAAACAC 60.120 47.826 11.12 0.00 0.00 3.32
3709 4660 2.158959 CGTGGTGCTACTAGTGCGC 61.159 63.158 17.29 17.29 39.88 6.09
3809 4772 3.575247 ACCGGCCATCACCACCAA 61.575 61.111 0.00 0.00 0.00 3.67
3810 4773 2.751436 CCGGCCATCACCACCAAG 60.751 66.667 2.24 0.00 0.00 3.61
3811 4774 2.034066 CGGCCATCACCACCAAGT 59.966 61.111 2.24 0.00 0.00 3.16
3812 4775 2.334946 CGGCCATCACCACCAAGTG 61.335 63.158 2.24 0.00 39.20 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.289195 CCAACCTAGTAAACGTCAGCCA 60.289 50.000 0.00 0.00 0.00 4.75
3 4 2.344025 CCCAACCTAGTAAACGTCAGC 58.656 52.381 0.00 0.00 0.00 4.26
4 5 2.301009 ACCCCAACCTAGTAAACGTCAG 59.699 50.000 0.00 0.00 0.00 3.51
5 6 2.037511 CACCCCAACCTAGTAAACGTCA 59.962 50.000 0.00 0.00 0.00 4.35
7 8 1.348696 CCACCCCAACCTAGTAAACGT 59.651 52.381 0.00 0.00 0.00 3.99
9 10 1.074244 TGCCACCCCAACCTAGTAAAC 59.926 52.381 0.00 0.00 0.00 2.01
10 11 1.447099 TGCCACCCCAACCTAGTAAA 58.553 50.000 0.00 0.00 0.00 2.01
11 12 1.676248 ATGCCACCCCAACCTAGTAA 58.324 50.000 0.00 0.00 0.00 2.24
12 13 1.676248 AATGCCACCCCAACCTAGTA 58.324 50.000 0.00 0.00 0.00 1.82
13 14 0.783850 AAATGCCACCCCAACCTAGT 59.216 50.000 0.00 0.00 0.00 2.57
14 15 1.185315 CAAATGCCACCCCAACCTAG 58.815 55.000 0.00 0.00 0.00 3.02
15 16 0.902516 GCAAATGCCACCCCAACCTA 60.903 55.000 0.00 0.00 34.31 3.08
16 17 2.216331 GCAAATGCCACCCCAACCT 61.216 57.895 0.00 0.00 34.31 3.50
17 18 0.902516 TAGCAAATGCCACCCCAACC 60.903 55.000 0.94 0.00 43.38 3.77
18 19 0.532115 CTAGCAAATGCCACCCCAAC 59.468 55.000 0.94 0.00 43.38 3.77
19 20 1.257055 GCTAGCAAATGCCACCCCAA 61.257 55.000 10.63 0.00 43.38 4.12
20 21 1.682005 GCTAGCAAATGCCACCCCA 60.682 57.895 10.63 0.00 43.38 4.96
21 22 2.774799 CGCTAGCAAATGCCACCCC 61.775 63.158 16.45 0.00 43.38 4.95
22 23 1.595093 AACGCTAGCAAATGCCACCC 61.595 55.000 16.45 0.00 43.38 4.61
23 24 0.243636 AAACGCTAGCAAATGCCACC 59.756 50.000 16.45 0.00 43.38 4.61
24 25 1.617740 GAAACGCTAGCAAATGCCAC 58.382 50.000 16.45 0.00 43.38 5.01
25 26 0.525761 GGAAACGCTAGCAAATGCCA 59.474 50.000 16.45 0.00 43.38 4.92
26 27 0.525761 TGGAAACGCTAGCAAATGCC 59.474 50.000 16.45 8.45 43.38 4.40
27 28 2.159393 TCATGGAAACGCTAGCAAATGC 60.159 45.455 16.45 5.39 42.49 3.56
28 29 3.763097 TCATGGAAACGCTAGCAAATG 57.237 42.857 16.45 8.45 0.00 2.32
29 30 4.218417 ACTTTCATGGAAACGCTAGCAAAT 59.782 37.500 16.45 0.00 0.00 2.32
30 31 3.568007 ACTTTCATGGAAACGCTAGCAAA 59.432 39.130 16.45 3.34 0.00 3.68
31 32 3.146066 ACTTTCATGGAAACGCTAGCAA 58.854 40.909 16.45 0.00 0.00 3.91
32 33 2.778299 ACTTTCATGGAAACGCTAGCA 58.222 42.857 16.45 0.00 0.00 3.49
33 34 3.831715 AACTTTCATGGAAACGCTAGC 57.168 42.857 4.06 4.06 0.00 3.42
34 35 6.899114 ACTAAAACTTTCATGGAAACGCTAG 58.101 36.000 0.00 0.00 0.00 3.42
35 36 6.870971 ACTAAAACTTTCATGGAAACGCTA 57.129 33.333 0.00 0.00 0.00 4.26
36 37 5.767816 ACTAAAACTTTCATGGAAACGCT 57.232 34.783 0.00 0.00 0.00 5.07
37 38 6.142320 CAGAACTAAAACTTTCATGGAAACGC 59.858 38.462 0.00 0.00 0.00 4.84
38 39 7.165812 CACAGAACTAAAACTTTCATGGAAACG 59.834 37.037 0.00 0.00 0.00 3.60
39 40 7.973944 ACACAGAACTAAAACTTTCATGGAAAC 59.026 33.333 0.00 0.00 0.00 2.78
40 41 7.973388 CACACAGAACTAAAACTTTCATGGAAA 59.027 33.333 0.00 0.00 0.00 3.13
41 42 7.416213 CCACACAGAACTAAAACTTTCATGGAA 60.416 37.037 0.00 0.00 0.00 3.53
42 43 6.039270 CCACACAGAACTAAAACTTTCATGGA 59.961 38.462 0.00 0.00 0.00 3.41
43 44 6.208644 CCACACAGAACTAAAACTTTCATGG 58.791 40.000 0.00 0.00 0.00 3.66
44 45 6.208644 CCCACACAGAACTAAAACTTTCATG 58.791 40.000 0.00 0.00 0.00 3.07
45 46 5.301805 CCCCACACAGAACTAAAACTTTCAT 59.698 40.000 0.00 0.00 0.00 2.57
46 47 4.642885 CCCCACACAGAACTAAAACTTTCA 59.357 41.667 0.00 0.00 0.00 2.69
47 48 4.643334 ACCCCACACAGAACTAAAACTTTC 59.357 41.667 0.00 0.00 0.00 2.62
48 49 4.606210 ACCCCACACAGAACTAAAACTTT 58.394 39.130 0.00 0.00 0.00 2.66
49 50 4.245251 ACCCCACACAGAACTAAAACTT 57.755 40.909 0.00 0.00 0.00 2.66
50 51 3.945640 ACCCCACACAGAACTAAAACT 57.054 42.857 0.00 0.00 0.00 2.66
51 52 3.949113 TCAACCCCACACAGAACTAAAAC 59.051 43.478 0.00 0.00 0.00 2.43
52 53 4.237976 TCAACCCCACACAGAACTAAAA 57.762 40.909 0.00 0.00 0.00 1.52
53 54 3.935818 TCAACCCCACACAGAACTAAA 57.064 42.857 0.00 0.00 0.00 1.85
54 55 3.456644 TCTTCAACCCCACACAGAACTAA 59.543 43.478 0.00 0.00 0.00 2.24
55 56 3.042682 TCTTCAACCCCACACAGAACTA 58.957 45.455 0.00 0.00 0.00 2.24
56 57 1.843851 TCTTCAACCCCACACAGAACT 59.156 47.619 0.00 0.00 0.00 3.01
57 58 2.341846 TCTTCAACCCCACACAGAAC 57.658 50.000 0.00 0.00 0.00 3.01
58 59 3.020984 GTTTCTTCAACCCCACACAGAA 58.979 45.455 0.00 0.00 0.00 3.02
59 60 2.241176 AGTTTCTTCAACCCCACACAGA 59.759 45.455 0.00 0.00 35.77 3.41
60 61 2.358898 CAGTTTCTTCAACCCCACACAG 59.641 50.000 0.00 0.00 35.77 3.66
61 62 2.291282 ACAGTTTCTTCAACCCCACACA 60.291 45.455 0.00 0.00 35.77 3.72
62 63 2.357952 GACAGTTTCTTCAACCCCACAC 59.642 50.000 0.00 0.00 35.77 3.82
63 64 2.025793 TGACAGTTTCTTCAACCCCACA 60.026 45.455 0.00 0.00 35.77 4.17
64 65 2.357952 GTGACAGTTTCTTCAACCCCAC 59.642 50.000 0.00 0.00 35.77 4.61
65 66 2.650322 GTGACAGTTTCTTCAACCCCA 58.350 47.619 0.00 0.00 35.77 4.96
66 67 1.954382 GGTGACAGTTTCTTCAACCCC 59.046 52.381 0.00 0.00 35.77 4.95
67 68 2.357952 GTGGTGACAGTTTCTTCAACCC 59.642 50.000 0.00 0.00 44.46 4.11
68 69 2.357952 GGTGGTGACAGTTTCTTCAACC 59.642 50.000 0.00 0.00 44.46 3.77
69 70 2.031683 CGGTGGTGACAGTTTCTTCAAC 59.968 50.000 0.00 0.00 44.46 3.18
70 71 2.093394 TCGGTGGTGACAGTTTCTTCAA 60.093 45.455 0.00 0.00 44.46 2.69
71 72 1.483004 TCGGTGGTGACAGTTTCTTCA 59.517 47.619 0.00 0.00 44.46 3.02
72 73 2.234300 TCGGTGGTGACAGTTTCTTC 57.766 50.000 0.00 0.00 44.46 2.87
73 74 2.930826 ATCGGTGGTGACAGTTTCTT 57.069 45.000 0.00 0.00 44.46 2.52
74 75 3.162666 TCTATCGGTGGTGACAGTTTCT 58.837 45.455 0.00 0.00 44.46 2.52
75 76 3.587797 TCTATCGGTGGTGACAGTTTC 57.412 47.619 0.00 0.00 44.46 2.78
76 77 4.710375 ACTATCTATCGGTGGTGACAGTTT 59.290 41.667 0.00 0.00 44.46 2.66
77 78 4.279145 ACTATCTATCGGTGGTGACAGTT 58.721 43.478 0.00 0.00 44.46 3.16
78 79 3.884091 GACTATCTATCGGTGGTGACAGT 59.116 47.826 0.00 0.00 44.46 3.55
79 80 3.883489 TGACTATCTATCGGTGGTGACAG 59.117 47.826 0.00 0.00 44.46 3.51
80 81 3.883489 CTGACTATCTATCGGTGGTGACA 59.117 47.826 0.00 0.00 38.70 3.58
81 82 4.135306 TCTGACTATCTATCGGTGGTGAC 58.865 47.826 0.00 0.00 0.00 3.67
82 83 4.432980 TCTGACTATCTATCGGTGGTGA 57.567 45.455 0.00 0.00 0.00 4.02
83 84 5.705905 TGTATCTGACTATCTATCGGTGGTG 59.294 44.000 0.00 0.00 0.00 4.17
84 85 5.877491 TGTATCTGACTATCTATCGGTGGT 58.123 41.667 0.00 0.00 0.00 4.16
85 86 6.431543 AGTTGTATCTGACTATCTATCGGTGG 59.568 42.308 0.00 0.00 0.00 4.61
86 87 7.441890 AGTTGTATCTGACTATCTATCGGTG 57.558 40.000 0.00 0.00 0.00 4.94
87 88 9.570468 TTTAGTTGTATCTGACTATCTATCGGT 57.430 33.333 0.00 0.00 0.00 4.69
92 93 9.982651 GCCATTTTAGTTGTATCTGACTATCTA 57.017 33.333 0.00 0.00 0.00 1.98
93 94 7.934120 GGCCATTTTAGTTGTATCTGACTATCT 59.066 37.037 0.00 0.00 0.00 1.98
94 95 7.715249 TGGCCATTTTAGTTGTATCTGACTATC 59.285 37.037 0.00 0.00 0.00 2.08
95 96 7.573710 TGGCCATTTTAGTTGTATCTGACTAT 58.426 34.615 0.00 0.00 0.00 2.12
96 97 6.953101 TGGCCATTTTAGTTGTATCTGACTA 58.047 36.000 0.00 0.00 0.00 2.59
97 98 5.815581 TGGCCATTTTAGTTGTATCTGACT 58.184 37.500 0.00 0.00 0.00 3.41
98 99 5.449177 GCTGGCCATTTTAGTTGTATCTGAC 60.449 44.000 5.51 0.00 0.00 3.51
99 100 4.640201 GCTGGCCATTTTAGTTGTATCTGA 59.360 41.667 5.51 0.00 0.00 3.27
100 101 4.398988 TGCTGGCCATTTTAGTTGTATCTG 59.601 41.667 5.51 0.00 0.00 2.90
101 102 4.599041 TGCTGGCCATTTTAGTTGTATCT 58.401 39.130 5.51 0.00 0.00 1.98
102 103 4.981806 TGCTGGCCATTTTAGTTGTATC 57.018 40.909 5.51 0.00 0.00 2.24
103 104 5.736951 TTTGCTGGCCATTTTAGTTGTAT 57.263 34.783 5.51 0.00 0.00 2.29
104 105 5.537300 TTTTGCTGGCCATTTTAGTTGTA 57.463 34.783 5.51 0.00 0.00 2.41
105 106 4.414337 TTTTGCTGGCCATTTTAGTTGT 57.586 36.364 5.51 0.00 0.00 3.32
106 107 4.574013 TGTTTTTGCTGGCCATTTTAGTTG 59.426 37.500 5.51 0.00 0.00 3.16
107 108 4.775236 TGTTTTTGCTGGCCATTTTAGTT 58.225 34.783 5.51 0.00 0.00 2.24
108 109 4.414337 TGTTTTTGCTGGCCATTTTAGT 57.586 36.364 5.51 0.00 0.00 2.24
109 110 5.945466 AATGTTTTTGCTGGCCATTTTAG 57.055 34.783 5.51 0.00 0.00 1.85
110 111 7.807977 TTAAATGTTTTTGCTGGCCATTTTA 57.192 28.000 5.51 0.00 37.09 1.52
111 112 6.705863 TTAAATGTTTTTGCTGGCCATTTT 57.294 29.167 5.51 0.00 37.09 1.82
112 113 6.705863 TTTAAATGTTTTTGCTGGCCATTT 57.294 29.167 5.51 2.78 38.74 2.32
113 114 6.705863 TTTTAAATGTTTTTGCTGGCCATT 57.294 29.167 5.51 0.00 0.00 3.16
114 115 6.716173 AGATTTTAAATGTTTTTGCTGGCCAT 59.284 30.769 5.51 0.00 0.00 4.40
115 116 6.060788 AGATTTTAAATGTTTTTGCTGGCCA 58.939 32.000 4.71 4.71 0.00 5.36
116 117 6.558771 AGATTTTAAATGTTTTTGCTGGCC 57.441 33.333 0.00 0.00 0.00 5.36
117 118 6.298853 CGAGATTTTAAATGTTTTTGCTGGC 58.701 36.000 0.00 0.00 0.00 4.85
118 119 6.073873 TGCGAGATTTTAAATGTTTTTGCTGG 60.074 34.615 0.00 0.00 0.00 4.85
119 120 6.875753 TGCGAGATTTTAAATGTTTTTGCTG 58.124 32.000 0.00 0.00 0.00 4.41
120 121 6.346838 GCTGCGAGATTTTAAATGTTTTTGCT 60.347 34.615 0.00 0.00 0.00 3.91
121 122 5.785112 GCTGCGAGATTTTAAATGTTTTTGC 59.215 36.000 0.00 0.00 0.00 3.68
122 123 6.073873 TGGCTGCGAGATTTTAAATGTTTTTG 60.074 34.615 0.00 0.00 0.00 2.44
123 124 5.988561 TGGCTGCGAGATTTTAAATGTTTTT 59.011 32.000 0.00 0.00 0.00 1.94
124 125 5.537188 TGGCTGCGAGATTTTAAATGTTTT 58.463 33.333 0.00 0.00 0.00 2.43
125 126 5.048083 TCTGGCTGCGAGATTTTAAATGTTT 60.048 36.000 10.46 0.00 0.00 2.83
126 127 4.458989 TCTGGCTGCGAGATTTTAAATGTT 59.541 37.500 10.46 0.00 0.00 2.71
127 128 4.009675 TCTGGCTGCGAGATTTTAAATGT 58.990 39.130 10.46 0.00 0.00 2.71
128 129 4.621068 TCTGGCTGCGAGATTTTAAATG 57.379 40.909 10.46 0.00 0.00 2.32
129 130 6.767902 TCTTATCTGGCTGCGAGATTTTAAAT 59.232 34.615 27.99 9.27 31.71 1.40
130 131 6.112734 TCTTATCTGGCTGCGAGATTTTAAA 58.887 36.000 27.99 16.79 31.71 1.52
131 132 5.670485 TCTTATCTGGCTGCGAGATTTTAA 58.330 37.500 27.99 17.09 31.71 1.52
132 133 5.276461 TCTTATCTGGCTGCGAGATTTTA 57.724 39.130 27.99 11.27 31.71 1.52
133 134 4.142609 TCTTATCTGGCTGCGAGATTTT 57.857 40.909 27.99 11.28 31.71 1.82
134 135 3.827008 TCTTATCTGGCTGCGAGATTT 57.173 42.857 27.99 11.95 31.71 2.17
135 136 4.348863 AATCTTATCTGGCTGCGAGATT 57.651 40.909 27.99 11.28 31.71 2.40
136 137 4.314121 GAAATCTTATCTGGCTGCGAGAT 58.686 43.478 26.47 26.47 33.70 2.75
137 138 3.493350 GGAAATCTTATCTGGCTGCGAGA 60.493 47.826 16.68 16.68 0.00 4.04
138 139 2.805099 GGAAATCTTATCTGGCTGCGAG 59.195 50.000 5.20 5.20 0.00 5.03
139 140 2.170397 TGGAAATCTTATCTGGCTGCGA 59.830 45.455 0.00 0.00 0.00 5.10
140 141 2.564771 TGGAAATCTTATCTGGCTGCG 58.435 47.619 0.00 0.00 0.00 5.18
141 142 6.639632 TTATTGGAAATCTTATCTGGCTGC 57.360 37.500 0.00 0.00 0.00 5.25
162 163 7.543868 CGGCAAAATTCATGTGTAATCCTTTTA 59.456 33.333 0.00 0.00 0.00 1.52
168 171 5.060816 CACACGGCAAAATTCATGTGTAATC 59.939 40.000 0.00 0.00 38.40 1.75
170 173 4.036852 TCACACGGCAAAATTCATGTGTAA 59.963 37.500 0.00 0.00 38.40 2.41
172 175 2.360483 TCACACGGCAAAATTCATGTGT 59.640 40.909 0.00 0.00 40.87 3.72
181 184 1.400142 CAAGTCTGTCACACGGCAAAA 59.600 47.619 0.00 0.00 0.00 2.44
191 194 3.461061 CAAGAGCTGAACAAGTCTGTCA 58.539 45.455 0.00 0.00 33.45 3.58
203 206 0.322975 GACTTCAGGCCAAGAGCTGA 59.677 55.000 5.01 0.00 43.05 4.26
206 209 1.004440 ACGACTTCAGGCCAAGAGC 60.004 57.895 5.01 0.00 42.60 4.09
226 229 2.480224 TAGGTCGAATAGAAACGCGG 57.520 50.000 12.47 0.00 0.00 6.46
238 241 2.093606 TGTGGTGTGTTTGTTAGGTCGA 60.094 45.455 0.00 0.00 0.00 4.20
241 244 4.098807 GGATTTGTGGTGTGTTTGTTAGGT 59.901 41.667 0.00 0.00 0.00 3.08
248 251 4.697828 GGTTTTTGGATTTGTGGTGTGTTT 59.302 37.500 0.00 0.00 0.00 2.83
262 265 1.964933 GTGAAATCCCCGGTTTTTGGA 59.035 47.619 0.00 0.00 0.00 3.53
263 266 1.689273 TGTGAAATCCCCGGTTTTTGG 59.311 47.619 0.00 0.00 0.00 3.28
265 268 1.689813 GGTGTGAAATCCCCGGTTTTT 59.310 47.619 0.00 0.00 0.00 1.94
273 276 3.498018 GTGCAAAATTGGTGTGAAATCCC 59.502 43.478 0.00 0.00 0.00 3.85
274 277 3.184178 CGTGCAAAATTGGTGTGAAATCC 59.816 43.478 0.00 0.00 0.00 3.01
280 283 2.033832 GCTTTCGTGCAAAATTGGTGTG 60.034 45.455 0.00 0.00 0.00 3.82
281 284 2.200899 GCTTTCGTGCAAAATTGGTGT 58.799 42.857 0.00 0.00 0.00 4.16
284 287 1.526464 GGTGCTTTCGTGCAAAATTGG 59.474 47.619 0.00 0.00 45.12 3.16
285 288 1.189884 CGGTGCTTTCGTGCAAAATTG 59.810 47.619 0.00 0.00 45.12 2.32
295 298 1.661112 GAGAGGATTTCGGTGCTTTCG 59.339 52.381 0.00 0.00 0.00 3.46
300 303 1.478510 TGAGAGAGAGGATTTCGGTGC 59.521 52.381 0.00 0.00 0.00 5.01
303 306 2.017782 TCGTGAGAGAGAGGATTTCGG 58.982 52.381 0.00 0.00 34.84 4.30
304 307 3.766676 TTCGTGAGAGAGAGGATTTCG 57.233 47.619 0.00 0.00 43.69 3.46
305 308 5.748152 CAGATTTCGTGAGAGAGAGGATTTC 59.252 44.000 0.00 0.00 43.69 2.17
310 313 4.710423 TTCAGATTTCGTGAGAGAGAGG 57.290 45.455 0.00 0.00 43.69 3.69
313 316 7.413475 TTTCTTTTCAGATTTCGTGAGAGAG 57.587 36.000 0.00 0.00 43.69 3.20
316 319 7.170828 TCGATTTTCTTTTCAGATTTCGTGAGA 59.829 33.333 0.00 0.00 39.20 3.27
318 321 7.184800 TCGATTTTCTTTTCAGATTTCGTGA 57.815 32.000 0.00 0.00 31.71 4.35
319 322 8.440021 AATCGATTTTCTTTTCAGATTTCGTG 57.560 30.769 4.39 0.00 31.71 4.35
320 323 9.118236 GAAATCGATTTTCTTTTCAGATTTCGT 57.882 29.630 23.49 0.00 40.98 3.85
322 325 9.329913 TCGAAATCGATTTTCTTTTCAGATTTC 57.670 29.630 23.49 14.41 44.22 2.17
396 400 0.681887 TACTCGTTCTCCCGCATGGA 60.682 55.000 0.00 0.00 42.41 3.41
400 404 1.880894 CAGTACTCGTTCTCCCGCA 59.119 57.895 0.00 0.00 0.00 5.69
401 405 1.516603 GCAGTACTCGTTCTCCCGC 60.517 63.158 0.00 0.00 0.00 6.13
477 481 1.298859 ACCGCGTTTTCTCTGGATGC 61.299 55.000 4.92 0.00 0.00 3.91
521 531 4.039852 GGCAAAGATGGAAGGGTGTAAAAA 59.960 41.667 0.00 0.00 0.00 1.94
522 532 3.576550 GGCAAAGATGGAAGGGTGTAAAA 59.423 43.478 0.00 0.00 0.00 1.52
558 568 0.676466 TGGAAATAGTGGTGCGGCAG 60.676 55.000 1.18 0.00 0.00 4.85
559 569 0.958382 GTGGAAATAGTGGTGCGGCA 60.958 55.000 0.00 0.00 0.00 5.69
560 570 1.654023 GGTGGAAATAGTGGTGCGGC 61.654 60.000 0.00 0.00 0.00 6.53
561 571 1.029947 GGGTGGAAATAGTGGTGCGG 61.030 60.000 0.00 0.00 0.00 5.69
776 836 1.693083 CGCGGACGGGAATCAAGAAC 61.693 60.000 0.00 0.00 34.97 3.01
944 1024 1.186030 GCGAGCAAATGCAATTCGAG 58.814 50.000 16.54 0.00 45.16 4.04
1018 1117 0.173481 CTCTTCTCCGGCGACATCAA 59.827 55.000 9.30 0.00 0.00 2.57
1190 1295 1.109323 GCGAAATGGGGAAGGGGATG 61.109 60.000 0.00 0.00 0.00 3.51
1196 1301 0.609131 ACACAGGCGAAATGGGGAAG 60.609 55.000 0.00 0.00 0.00 3.46
1203 1313 1.338769 GGTACAGGACACAGGCGAAAT 60.339 52.381 0.00 0.00 0.00 2.17
1306 1426 2.678580 TCCATCGCCGACCTGTCA 60.679 61.111 0.00 0.00 0.00 3.58
1474 1603 2.948720 GCTGTTCTCAGGCTCCGGT 61.949 63.158 0.00 0.00 41.57 5.28
1589 1720 2.057137 ATAACCAATGCGAGCACCAT 57.943 45.000 0.00 0.00 0.00 3.55
1598 1729 4.858692 CACTACAACTGCAATAACCAATGC 59.141 41.667 0.00 0.00 42.86 3.56
1607 1741 3.057315 GCAATCACCACTACAACTGCAAT 60.057 43.478 0.00 0.00 0.00 3.56
1629 1769 4.443725 GCACATCGAGTCAGTAATCATCAG 59.556 45.833 0.00 0.00 0.00 2.90
1677 1826 2.042464 GGTGCATCCAGAGTCCTATCA 58.958 52.381 0.00 0.00 35.97 2.15
1680 1829 3.709834 TGGTGCATCCAGAGTCCTA 57.290 52.632 0.00 0.00 41.93 2.94
1779 1928 3.766691 GCGGCGTCCCAGAGGTAA 61.767 66.667 9.37 0.00 0.00 2.85
1917 2066 0.181350 GGTTCGAGCTGGAATCCCAT 59.819 55.000 14.60 0.00 42.59 4.00
1958 2107 6.553100 ACAGAGAATTATAACAGGAGAGAGGG 59.447 42.308 0.00 0.00 0.00 4.30
2026 2693 0.390078 CAGTGTCCTCAGCTGCAGAG 60.390 60.000 20.43 14.40 0.00 3.35
2053 2725 1.297967 CCGACTCTCGACTCATGCG 60.298 63.158 0.00 0.00 43.74 4.73
2198 2870 0.176680 CTGATCCGGACCACTTGAGG 59.823 60.000 6.12 0.00 0.00 3.86
2240 2912 0.834612 TGTGGAGGAGGTTGTCGTTT 59.165 50.000 0.00 0.00 0.00 3.60
2630 3302 2.435805 TCATAGGGAGCGAGCAAAGATT 59.564 45.455 0.00 0.00 0.00 2.40
2631 3303 2.042464 TCATAGGGAGCGAGCAAAGAT 58.958 47.619 0.00 0.00 0.00 2.40
2632 3304 1.485124 TCATAGGGAGCGAGCAAAGA 58.515 50.000 0.00 0.00 0.00 2.52
2794 3482 2.093764 AGACTTCGGAGCATCAGGAAAG 60.094 50.000 0.00 0.00 36.25 2.62
2821 3509 2.679349 GCTCTGGGTAGCCTTCTCTTTG 60.679 54.545 13.11 0.00 36.45 2.77
2831 3519 2.284190 GAACAATCTGCTCTGGGTAGC 58.716 52.381 0.00 0.00 43.08 3.58
2834 3522 2.158623 TGTTGAACAATCTGCTCTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
2836 3524 2.095364 GCTGTTGAACAATCTGCTCTGG 60.095 50.000 0.00 0.00 0.00 3.86
2869 3557 3.922640 CTGCTCCCTCCCTAGCGC 61.923 72.222 0.00 0.00 41.77 5.92
3070 3802 2.784347 TGCGACAATTAACATGGGTCA 58.216 42.857 0.00 0.00 0.00 4.02
3078 3810 6.805271 TGTACTAGAGAGTTGCGACAATTAAC 59.195 38.462 6.90 0.00 37.10 2.01
3079 3811 6.916440 TGTACTAGAGAGTTGCGACAATTAA 58.084 36.000 6.90 0.00 37.10 1.40
3115 3847 3.746940 TCTTGTAAAAAGGAACGGAGGG 58.253 45.455 0.00 0.00 0.00 4.30
3116 3848 4.760204 ACATCTTGTAAAAAGGAACGGAGG 59.240 41.667 0.00 0.00 0.00 4.30
3117 3849 5.941948 ACATCTTGTAAAAAGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
3118 3850 6.702716 AAACATCTTGTAAAAAGGAACGGA 57.297 33.333 0.00 0.00 0.00 4.69
3119 3851 8.347035 TCTAAAACATCTTGTAAAAAGGAACGG 58.653 33.333 0.00 0.00 0.00 4.44
3120 3852 9.166126 GTCTAAAACATCTTGTAAAAAGGAACG 57.834 33.333 0.00 0.00 0.00 3.95
3123 3855 8.349983 GCTGTCTAAAACATCTTGTAAAAAGGA 58.650 33.333 0.00 0.00 37.23 3.36
3124 3856 8.352942 AGCTGTCTAAAACATCTTGTAAAAAGG 58.647 33.333 0.00 0.00 37.23 3.11
3125 3857 9.173939 CAGCTGTCTAAAACATCTTGTAAAAAG 57.826 33.333 5.25 0.00 37.23 2.27
3126 3858 8.134895 CCAGCTGTCTAAAACATCTTGTAAAAA 58.865 33.333 13.81 0.00 37.23 1.94
3127 3859 7.284489 ACCAGCTGTCTAAAACATCTTGTAAAA 59.716 33.333 13.81 0.00 37.23 1.52
3128 3860 6.770785 ACCAGCTGTCTAAAACATCTTGTAAA 59.229 34.615 13.81 0.00 37.23 2.01
3129 3861 6.296026 ACCAGCTGTCTAAAACATCTTGTAA 58.704 36.000 13.81 0.00 37.23 2.41
3130 3862 5.865085 ACCAGCTGTCTAAAACATCTTGTA 58.135 37.500 13.81 0.00 37.23 2.41
3131 3863 4.718961 ACCAGCTGTCTAAAACATCTTGT 58.281 39.130 13.81 0.00 37.23 3.16
3132 3864 5.695851 AACCAGCTGTCTAAAACATCTTG 57.304 39.130 13.81 0.00 37.23 3.02
3133 3865 6.321181 TCAAAACCAGCTGTCTAAAACATCTT 59.679 34.615 13.81 0.00 37.23 2.40
3134 3866 5.827797 TCAAAACCAGCTGTCTAAAACATCT 59.172 36.000 13.81 0.00 37.23 2.90
3135 3867 6.072112 TCAAAACCAGCTGTCTAAAACATC 57.928 37.500 13.81 0.00 37.23 3.06
3136 3868 6.096846 AGTTCAAAACCAGCTGTCTAAAACAT 59.903 34.615 13.81 0.00 37.23 2.71
3137 3869 5.417580 AGTTCAAAACCAGCTGTCTAAAACA 59.582 36.000 13.81 0.00 36.18 2.83
3138 3870 5.743872 CAGTTCAAAACCAGCTGTCTAAAAC 59.256 40.000 13.81 9.55 0.00 2.43
3139 3871 5.417580 ACAGTTCAAAACCAGCTGTCTAAAA 59.582 36.000 13.81 0.00 35.78 1.52
3140 3872 4.947388 ACAGTTCAAAACCAGCTGTCTAAA 59.053 37.500 13.81 0.00 35.78 1.85
3141 3873 4.523083 ACAGTTCAAAACCAGCTGTCTAA 58.477 39.130 13.81 0.00 35.78 2.10
3142 3874 4.150897 ACAGTTCAAAACCAGCTGTCTA 57.849 40.909 13.81 0.00 35.78 2.59
3143 3875 3.004752 ACAGTTCAAAACCAGCTGTCT 57.995 42.857 13.81 0.00 35.78 3.41
3144 3876 3.782889 AACAGTTCAAAACCAGCTGTC 57.217 42.857 13.81 0.00 39.19 3.51
3145 3877 4.244862 CAAAACAGTTCAAAACCAGCTGT 58.755 39.130 13.81 0.00 41.51 4.40
3146 3878 3.618150 CCAAAACAGTTCAAAACCAGCTG 59.382 43.478 6.78 6.78 0.00 4.24
3147 3879 3.369366 CCCAAAACAGTTCAAAACCAGCT 60.369 43.478 0.00 0.00 0.00 4.24
3148 3880 2.935849 CCCAAAACAGTTCAAAACCAGC 59.064 45.455 0.00 0.00 0.00 4.85
3149 3881 4.432712 CTCCCAAAACAGTTCAAAACCAG 58.567 43.478 0.00 0.00 0.00 4.00
3150 3882 3.368948 GCTCCCAAAACAGTTCAAAACCA 60.369 43.478 0.00 0.00 0.00 3.67
3151 3883 3.118775 AGCTCCCAAAACAGTTCAAAACC 60.119 43.478 0.00 0.00 0.00 3.27
3152 3884 3.865164 CAGCTCCCAAAACAGTTCAAAAC 59.135 43.478 0.00 0.00 0.00 2.43
3153 3885 3.513515 ACAGCTCCCAAAACAGTTCAAAA 59.486 39.130 0.00 0.00 0.00 2.44
3154 3886 3.096092 ACAGCTCCCAAAACAGTTCAAA 58.904 40.909 0.00 0.00 0.00 2.69
3155 3887 2.733956 ACAGCTCCCAAAACAGTTCAA 58.266 42.857 0.00 0.00 0.00 2.69
3156 3888 2.435372 ACAGCTCCCAAAACAGTTCA 57.565 45.000 0.00 0.00 0.00 3.18
3157 3889 3.130340 TCAAACAGCTCCCAAAACAGTTC 59.870 43.478 0.00 0.00 0.00 3.01
3158 3890 3.096092 TCAAACAGCTCCCAAAACAGTT 58.904 40.909 0.00 0.00 0.00 3.16
3159 3891 2.733956 TCAAACAGCTCCCAAAACAGT 58.266 42.857 0.00 0.00 0.00 3.55
3160 3892 3.131046 AGTTCAAACAGCTCCCAAAACAG 59.869 43.478 0.00 0.00 0.00 3.16
3161 3893 3.096092 AGTTCAAACAGCTCCCAAAACA 58.904 40.909 0.00 0.00 0.00 2.83
3162 3894 3.801114 AGTTCAAACAGCTCCCAAAAC 57.199 42.857 0.00 0.00 0.00 2.43
3163 3895 4.466015 AGAAAGTTCAAACAGCTCCCAAAA 59.534 37.500 0.00 0.00 0.00 2.44
3164 3896 4.023291 AGAAAGTTCAAACAGCTCCCAAA 58.977 39.130 0.00 0.00 0.00 3.28
3165 3897 3.631250 AGAAAGTTCAAACAGCTCCCAA 58.369 40.909 0.00 0.00 0.00 4.12
3166 3898 3.297134 AGAAAGTTCAAACAGCTCCCA 57.703 42.857 0.00 0.00 0.00 4.37
3167 3899 5.767816 TTTAGAAAGTTCAAACAGCTCCC 57.232 39.130 0.00 0.00 0.00 4.30
3168 3900 5.681543 CGTTTTAGAAAGTTCAAACAGCTCC 59.318 40.000 7.40 0.00 0.00 4.70
3169 3901 6.255950 ACGTTTTAGAAAGTTCAAACAGCTC 58.744 36.000 7.40 0.00 0.00 4.09
3170 3902 6.093633 AGACGTTTTAGAAAGTTCAAACAGCT 59.906 34.615 0.00 0.00 0.00 4.24
3171 3903 6.255950 AGACGTTTTAGAAAGTTCAAACAGC 58.744 36.000 0.00 0.00 0.00 4.40
3172 3904 9.931210 ATAAGACGTTTTAGAAAGTTCAAACAG 57.069 29.630 4.75 4.11 0.00 3.16
3187 3919 8.557029 CCTCTGTTCACTTTTATAAGACGTTTT 58.443 33.333 0.00 0.00 35.30 2.43
3188 3920 7.172703 CCCTCTGTTCACTTTTATAAGACGTTT 59.827 37.037 0.00 0.00 35.30 3.60
3189 3921 6.649557 CCCTCTGTTCACTTTTATAAGACGTT 59.350 38.462 0.00 0.00 35.30 3.99
3190 3922 6.014840 TCCCTCTGTTCACTTTTATAAGACGT 60.015 38.462 0.00 0.00 35.30 4.34
3191 3923 6.395629 TCCCTCTGTTCACTTTTATAAGACG 58.604 40.000 0.00 0.00 35.30 4.18
3192 3924 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
3193 3925 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
3194 3926 8.532819 AGTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
3195 3927 8.431910 AGTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
3196 3928 9.537852 TTAGTACTCCCTCTGTTCACTTTTATA 57.462 33.333 0.00 0.00 0.00 0.98
3197 3929 6.936968 AGTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
3198 3930 7.844493 TTAGTACTCCCTCTGTTCACTTTTA 57.156 36.000 0.00 0.00 0.00 1.52
3199 3931 6.742559 TTAGTACTCCCTCTGTTCACTTTT 57.257 37.500 0.00 0.00 0.00 2.27
3200 3932 6.326843 ACTTTAGTACTCCCTCTGTTCACTTT 59.673 38.462 0.00 0.00 0.00 2.66
3201 3933 5.839606 ACTTTAGTACTCCCTCTGTTCACTT 59.160 40.000 0.00 0.00 0.00 3.16
3202 3934 5.395611 ACTTTAGTACTCCCTCTGTTCACT 58.604 41.667 0.00 0.00 0.00 3.41
3203 3935 5.725325 ACTTTAGTACTCCCTCTGTTCAC 57.275 43.478 0.00 0.00 0.00 3.18
3204 3936 5.601313 ACAACTTTAGTACTCCCTCTGTTCA 59.399 40.000 0.00 0.00 0.00 3.18
3205 3937 6.099159 ACAACTTTAGTACTCCCTCTGTTC 57.901 41.667 0.00 0.00 0.00 3.18
3206 3938 6.781507 AGTACAACTTTAGTACTCCCTCTGTT 59.218 38.462 0.00 0.00 46.80 3.16
3207 3939 6.313324 AGTACAACTTTAGTACTCCCTCTGT 58.687 40.000 0.00 1.90 46.80 3.41
3208 3940 6.837471 AGTACAACTTTAGTACTCCCTCTG 57.163 41.667 0.00 0.00 46.80 3.35
3209 3941 8.946797 TTTAGTACAACTTTAGTACTCCCTCT 57.053 34.615 9.05 0.00 46.80 3.69
3210 3942 7.758980 GCTTTAGTACAACTTTAGTACTCCCTC 59.241 40.741 9.05 0.00 46.80 4.30
3211 3943 7.454066 AGCTTTAGTACAACTTTAGTACTCCCT 59.546 37.037 9.05 0.99 46.80 4.20
3212 3944 7.544915 CAGCTTTAGTACAACTTTAGTACTCCC 59.455 40.741 9.05 0.00 46.80 4.30
3213 3945 7.063191 GCAGCTTTAGTACAACTTTAGTACTCC 59.937 40.741 9.05 0.00 46.80 3.85
3214 3946 7.597743 TGCAGCTTTAGTACAACTTTAGTACTC 59.402 37.037 9.05 0.00 46.80 2.59
3216 3948 7.647907 TGCAGCTTTAGTACAACTTTAGTAC 57.352 36.000 0.00 0.00 41.59 2.73
3217 3949 7.711772 TGTTGCAGCTTTAGTACAACTTTAGTA 59.288 33.333 1.17 0.00 40.88 1.82
3218 3950 6.540914 TGTTGCAGCTTTAGTACAACTTTAGT 59.459 34.615 1.17 0.00 40.88 2.24
3219 3951 6.954944 TGTTGCAGCTTTAGTACAACTTTAG 58.045 36.000 1.17 0.00 40.88 1.85
3220 3952 6.928979 TGTTGCAGCTTTAGTACAACTTTA 57.071 33.333 1.17 0.00 40.88 1.85
3232 3964 7.444792 TCAATCCAAATTAATTGTTGCAGCTTT 59.555 29.630 0.39 0.00 37.32 3.51
3269 4002 8.637099 TGACACATGATTTTGAGACCATAAAAA 58.363 29.630 0.00 0.00 30.50 1.94
3317 4089 4.646492 AGTCAACAGGAAACATCAAAAGCT 59.354 37.500 0.00 0.00 0.00 3.74
3343 4115 0.040958 GCCTCACGTCAACAGCAAAG 60.041 55.000 0.00 0.00 0.00 2.77
3429 4203 5.614324 ATGACCCGAGAAGAATAACATCA 57.386 39.130 0.00 0.00 0.00 3.07
3430 4204 6.513180 TGTATGACCCGAGAAGAATAACATC 58.487 40.000 0.00 0.00 0.00 3.06
3457 4237 1.476845 TTGCCACTCCGAGCTTGGTA 61.477 55.000 19.96 3.81 32.50 3.25
3461 4241 1.600916 GGTTTGCCACTCCGAGCTT 60.601 57.895 0.00 0.00 34.09 3.74
3462 4242 2.032681 GGTTTGCCACTCCGAGCT 59.967 61.111 0.00 0.00 34.09 4.09
3499 4421 4.204978 CGCACATTTCTTTGACTGAAACAC 59.795 41.667 0.00 0.00 36.43 3.32
3524 4456 0.751277 CCACTGCACTGAACCAACCA 60.751 55.000 0.00 0.00 0.00 3.67
3537 4469 0.038892 CAAACACCATCTGCCACTGC 60.039 55.000 0.00 0.00 38.26 4.40
3581 4525 3.615614 GCTGCTAATCTGATTTTGCGAG 58.384 45.455 8.38 12.81 0.00 5.03
3697 4648 2.002127 CTGCAAGCGCACTAGTAGC 58.998 57.895 11.47 12.95 45.36 3.58
3726 4677 2.024871 CGAGATCTGACGGCCGAC 59.975 66.667 35.90 27.96 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.