Multiple sequence alignment - TraesCS2D01G437600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G437600 chr2D 100.000 3894 0 0 1 3894 547613612 547609719 0.000000e+00 7191.0
1 TraesCS2D01G437600 chr2D 96.552 58 2 0 161 218 547613395 547613338 3.200000e-16 97.1
2 TraesCS2D01G437600 chr2D 96.552 58 2 0 218 275 547613452 547613395 3.200000e-16 97.1
3 TraesCS2D01G437600 chr2A 83.669 2976 283 98 238 3098 691235263 691238150 0.000000e+00 2615.0
4 TraesCS2D01G437600 chr2A 92.523 214 12 3 3678 3890 691244481 691244691 1.760000e-78 303.0
5 TraesCS2D01G437600 chr2A 94.505 182 9 1 3091 3272 691244308 691244488 2.960000e-71 279.0
6 TraesCS2D01G437600 chr2A 92.021 188 12 2 3458 3644 417098284 417098099 1.070000e-65 261.0
7 TraesCS2D01G437600 chr2B 91.179 1281 75 20 2155 3416 653915258 653913997 0.000000e+00 1705.0
8 TraesCS2D01G437600 chr2B 83.993 1693 165 53 241 1885 653917252 653915618 0.000000e+00 1528.0
9 TraesCS2D01G437600 chr2B 83.262 233 12 5 3665 3894 653913929 653913721 5.140000e-44 189.0
10 TraesCS2D01G437600 chr6A 94.635 727 31 3 916 1642 54666069 54666787 0.000000e+00 1120.0
11 TraesCS2D01G437600 chr6A 93.684 190 8 2 3458 3643 370672316 370672127 8.240000e-72 281.0
12 TraesCS2D01G437600 chr1D 82.979 329 26 17 1321 1630 480516460 480516777 1.780000e-68 270.0
13 TraesCS2D01G437600 chr1D 89.796 196 13 2 3453 3641 337212499 337212304 1.080000e-60 244.0
14 TraesCS2D01G437600 chr1D 90.511 137 9 2 1124 1260 480516213 480516345 1.110000e-40 178.0
15 TraesCS2D01G437600 chr5D 89.952 209 8 7 3443 3643 421111921 421111718 1.390000e-64 257.0
16 TraesCS2D01G437600 chr5D 90.323 186 12 3 3458 3643 368735476 368735655 5.030000e-59 239.0
17 TraesCS2D01G437600 chr3D 90.957 188 13 4 3459 3643 7524352 7524166 2.320000e-62 250.0
18 TraesCS2D01G437600 chr3D 90.909 187 14 2 3459 3643 246640544 246640359 8.350000e-62 248.0
19 TraesCS2D01G437600 chr3A 90.426 188 16 1 3459 3644 673431354 673431541 3.000000e-61 246.0
20 TraesCS2D01G437600 chr6B 90.052 191 15 3 3457 3643 52338446 52338256 1.080000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G437600 chr2D 547609719 547613612 3893 True 2461.733333 7191 97.701333 1 3894 3 chr2D.!!$R1 3893
1 TraesCS2D01G437600 chr2A 691235263 691238150 2887 False 2615.000000 2615 83.669000 238 3098 1 chr2A.!!$F1 2860
2 TraesCS2D01G437600 chr2B 653913721 653917252 3531 True 1140.666667 1705 86.144667 241 3894 3 chr2B.!!$R1 3653
3 TraesCS2D01G437600 chr6A 54666069 54666787 718 False 1120.000000 1120 94.635000 916 1642 1 chr6A.!!$F1 726
4 TraesCS2D01G437600 chr1D 480516213 480516777 564 False 224.000000 270 86.745000 1124 1630 2 chr1D.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.034896 AAGGGAGCCACGTGTACAAG 59.965 55.0 15.65 7.29 0.00 3.16 F
164 165 0.107410 AAGGTCGTTGTCCACTGCAA 60.107 50.0 0.00 0.00 0.00 4.08 F
216 217 0.108041 ACGGTCAAAATATCGCCCGT 60.108 50.0 0.00 0.00 43.29 5.28 F
440 442 0.108329 ACAGACAAATACGCTCCCCG 60.108 55.0 0.00 0.00 44.21 5.73 F
2063 2248 0.179043 TTTTGCCTGCACGGACTGTA 60.179 50.0 6.40 0.00 33.16 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2218 0.314935 CAGTCCGTGCAGGCAAAAAT 59.685 50.000 0.00 0.00 40.77 1.82 R
2055 2231 4.649088 TCATCCATACACTTACAGTCCG 57.351 45.455 0.00 0.00 0.00 4.79 R
2076 2261 4.827284 CCAATACCTGGTTTGAGTCTGTTT 59.173 41.667 3.84 0.00 40.78 2.83 R
2364 2695 2.526873 AGGGTGTCCTCAAGCGGT 60.527 61.111 0.00 0.00 39.80 5.68 R
3203 3553 0.037160 ATGTGGCTCTGTGCACATCA 59.963 50.000 22.00 13.39 45.15 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.031465 GGAACGGTTCCTCGCCAA 59.969 61.111 28.43 0.00 46.57 4.52
29 30 2.033194 GGAACGGTTCCTCGCCAAG 61.033 63.158 28.43 0.00 46.57 3.61
30 31 2.668550 AACGGTTCCTCGCCAAGC 60.669 61.111 0.00 0.00 0.00 4.01
76 77 4.697756 CACCTTTCCGCCGCTGGA 62.698 66.667 0.00 0.52 35.83 3.86
77 78 3.948719 ACCTTTCCGCCGCTGGAA 61.949 61.111 11.20 11.20 46.12 3.53
81 82 3.399181 TTCCGCCGCTGGAAGGAT 61.399 61.111 11.20 0.00 43.01 3.24
82 83 3.680620 TTCCGCCGCTGGAAGGATG 62.681 63.158 11.20 0.00 43.01 3.51
88 89 3.741860 GCTGGAAGGATGGCGATG 58.258 61.111 0.00 0.00 0.00 3.84
89 90 1.146930 GCTGGAAGGATGGCGATGA 59.853 57.895 0.00 0.00 0.00 2.92
90 91 1.162800 GCTGGAAGGATGGCGATGAC 61.163 60.000 0.00 0.00 0.00 3.06
91 92 0.877649 CTGGAAGGATGGCGATGACG 60.878 60.000 0.00 0.00 42.93 4.35
92 93 1.326951 TGGAAGGATGGCGATGACGA 61.327 55.000 0.00 0.00 42.66 4.20
99 100 3.330853 GGCGATGACGACGATGGC 61.331 66.667 0.00 0.00 42.66 4.40
100 101 2.582226 GCGATGACGACGATGGCA 60.582 61.111 0.00 0.00 42.66 4.92
101 102 1.951130 GCGATGACGACGATGGCAT 60.951 57.895 0.00 0.00 42.66 4.40
102 103 1.848640 CGATGACGACGATGGCATG 59.151 57.895 3.81 0.00 42.66 4.06
103 104 1.551503 CGATGACGACGATGGCATGG 61.552 60.000 3.81 6.26 42.66 3.66
104 105 0.249447 GATGACGACGATGGCATGGA 60.249 55.000 16.77 0.00 0.00 3.41
105 106 0.530650 ATGACGACGATGGCATGGAC 60.531 55.000 16.77 9.14 0.00 4.02
106 107 2.202743 ACGACGATGGCATGGACG 60.203 61.111 26.05 26.05 33.26 4.79
107 108 2.961721 CGACGATGGCATGGACGG 60.962 66.667 21.90 7.63 0.00 4.79
108 109 3.272334 GACGATGGCATGGACGGC 61.272 66.667 16.77 6.83 0.00 5.68
110 111 4.889856 CGATGGCATGGACGGCGA 62.890 66.667 16.62 0.00 0.00 5.54
111 112 2.281070 GATGGCATGGACGGCGAT 60.281 61.111 16.62 0.00 32.12 4.58
112 113 2.592574 ATGGCATGGACGGCGATG 60.593 61.111 16.62 9.20 33.84 3.84
113 114 4.854924 TGGCATGGACGGCGATGG 62.855 66.667 16.62 0.00 31.65 3.51
116 117 2.514592 CATGGACGGCGATGGCTT 60.515 61.111 16.62 0.00 39.81 4.35
117 118 2.114670 CATGGACGGCGATGGCTTT 61.115 57.895 16.62 0.00 39.81 3.51
118 119 2.114670 ATGGACGGCGATGGCTTTG 61.115 57.895 16.62 0.00 39.81 2.77
119 120 4.179579 GGACGGCGATGGCTTTGC 62.180 66.667 16.62 4.06 39.81 3.68
120 121 4.520846 GACGGCGATGGCTTTGCG 62.521 66.667 16.62 0.00 39.81 4.85
123 124 4.179579 GGCGATGGCTTTGCGGTC 62.180 66.667 0.00 0.00 39.81 4.79
124 125 4.520846 GCGATGGCTTTGCGGTCG 62.521 66.667 9.61 9.61 38.45 4.79
125 126 3.864686 CGATGGCTTTGCGGTCGG 61.865 66.667 7.12 0.00 34.32 4.79
126 127 4.179579 GATGGCTTTGCGGTCGGC 62.180 66.667 0.00 0.00 43.96 5.54
130 131 4.404654 GCTTTGCGGTCGGCCAAG 62.405 66.667 6.96 3.13 44.88 3.61
131 132 3.737172 CTTTGCGGTCGGCCAAGG 61.737 66.667 6.96 0.00 39.94 3.61
142 143 4.643387 GCCAAGGGAGCCACGTGT 62.643 66.667 15.65 0.00 0.00 4.49
143 144 3.065306 CCAAGGGAGCCACGTGTA 58.935 61.111 15.65 0.00 0.00 2.90
144 145 1.375523 CCAAGGGAGCCACGTGTAC 60.376 63.158 15.65 6.24 0.00 2.90
145 146 1.369692 CAAGGGAGCCACGTGTACA 59.630 57.895 15.65 0.00 0.00 2.90
146 147 0.250124 CAAGGGAGCCACGTGTACAA 60.250 55.000 15.65 0.00 0.00 2.41
147 148 0.034896 AAGGGAGCCACGTGTACAAG 59.965 55.000 15.65 7.29 0.00 3.16
148 149 1.375523 GGGAGCCACGTGTACAAGG 60.376 63.158 15.65 9.47 0.00 3.61
149 150 1.370064 GGAGCCACGTGTACAAGGT 59.630 57.895 15.65 3.79 0.00 3.50
150 151 0.669625 GGAGCCACGTGTACAAGGTC 60.670 60.000 15.65 12.97 0.00 3.85
151 152 1.006571 AGCCACGTGTACAAGGTCG 60.007 57.895 15.65 7.83 0.00 4.79
152 153 1.300388 GCCACGTGTACAAGGTCGT 60.300 57.895 15.65 8.48 36.99 4.34
153 154 0.877213 GCCACGTGTACAAGGTCGTT 60.877 55.000 15.65 0.00 34.30 3.85
154 155 0.856641 CCACGTGTACAAGGTCGTTG 59.143 55.000 15.65 3.73 42.48 4.10
162 163 1.941812 CAAGGTCGTTGTCCACTGC 59.058 57.895 0.00 0.00 0.00 4.40
163 164 0.813610 CAAGGTCGTTGTCCACTGCA 60.814 55.000 0.00 0.00 0.00 4.41
164 165 0.107410 AAGGTCGTTGTCCACTGCAA 60.107 50.000 0.00 0.00 0.00 4.08
165 166 0.532862 AGGTCGTTGTCCACTGCAAG 60.533 55.000 0.00 0.00 42.29 4.01
180 181 4.525912 CTGCAAGTTAGCCTCCAAATTT 57.474 40.909 0.00 0.00 0.00 1.82
181 182 4.886579 CTGCAAGTTAGCCTCCAAATTTT 58.113 39.130 0.00 0.00 0.00 1.82
182 183 5.289083 TGCAAGTTAGCCTCCAAATTTTT 57.711 34.783 0.00 0.00 0.00 1.94
211 212 8.889849 ATTTTAGTTGAACGGTCAAAATATCG 57.110 30.769 19.26 0.00 45.29 2.92
212 213 4.336532 AGTTGAACGGTCAAAATATCGC 57.663 40.909 19.26 3.32 45.29 4.58
213 214 3.126343 AGTTGAACGGTCAAAATATCGCC 59.874 43.478 19.26 2.51 45.29 5.54
214 215 2.011222 TGAACGGTCAAAATATCGCCC 58.989 47.619 0.00 0.00 0.00 6.13
215 216 1.004292 GAACGGTCAAAATATCGCCCG 60.004 52.381 0.00 0.00 41.09 6.13
216 217 0.108041 ACGGTCAAAATATCGCCCGT 60.108 50.000 0.00 0.00 43.29 5.28
217 218 1.011333 CGGTCAAAATATCGCCCGTT 58.989 50.000 0.00 0.00 0.00 4.44
218 219 1.267832 CGGTCAAAATATCGCCCGTTG 60.268 52.381 0.00 0.00 0.00 4.10
219 220 1.533129 GGTCAAAATATCGCCCGTTGC 60.533 52.381 0.00 0.00 0.00 4.17
220 221 1.131504 GTCAAAATATCGCCCGTTGCA 59.868 47.619 0.00 0.00 41.33 4.08
221 222 1.813178 TCAAAATATCGCCCGTTGCAA 59.187 42.857 0.00 0.00 41.33 4.08
222 223 2.159448 TCAAAATATCGCCCGTTGCAAG 60.159 45.455 0.00 0.00 41.33 4.01
223 224 1.459450 AAATATCGCCCGTTGCAAGT 58.541 45.000 0.00 0.00 41.33 3.16
224 225 1.459450 AATATCGCCCGTTGCAAGTT 58.541 45.000 0.00 0.00 41.33 2.66
225 226 2.319136 ATATCGCCCGTTGCAAGTTA 57.681 45.000 0.00 0.00 41.33 2.24
226 227 1.647346 TATCGCCCGTTGCAAGTTAG 58.353 50.000 0.00 0.00 41.33 2.34
227 228 1.644786 ATCGCCCGTTGCAAGTTAGC 61.645 55.000 0.00 0.00 41.33 3.09
228 229 2.566529 GCCCGTTGCAAGTTAGCC 59.433 61.111 0.00 0.00 40.77 3.93
229 230 1.971695 GCCCGTTGCAAGTTAGCCT 60.972 57.895 0.00 0.00 40.77 4.58
230 231 1.923227 GCCCGTTGCAAGTTAGCCTC 61.923 60.000 0.00 0.00 40.77 4.70
231 232 1.305930 CCCGTTGCAAGTTAGCCTCC 61.306 60.000 0.00 0.00 0.00 4.30
232 233 0.605319 CCGTTGCAAGTTAGCCTCCA 60.605 55.000 0.00 0.00 0.00 3.86
233 234 1.234821 CGTTGCAAGTTAGCCTCCAA 58.765 50.000 0.00 0.00 0.00 3.53
234 235 1.606668 CGTTGCAAGTTAGCCTCCAAA 59.393 47.619 0.00 0.00 0.00 3.28
235 236 2.228822 CGTTGCAAGTTAGCCTCCAAAT 59.771 45.455 0.00 0.00 0.00 2.32
236 237 3.305335 CGTTGCAAGTTAGCCTCCAAATT 60.305 43.478 0.00 0.00 0.00 1.82
269 270 6.636666 TTAGTTGAACGGTCGAAATATCAC 57.363 37.500 0.00 0.00 0.00 3.06
279 280 5.691305 CGGTCGAAATATCACCCGTTTTATA 59.309 40.000 0.00 0.00 35.09 0.98
309 310 9.645128 AATATGTCCAAACTATGATGAAATCCA 57.355 29.630 0.00 0.00 44.73 3.41
364 365 9.767684 TTCAGTTTTATTTCGCAATGTATACAG 57.232 29.630 11.91 0.00 0.00 2.74
366 367 9.210426 CAGTTTTATTTCGCAATGTATACAGAC 57.790 33.333 11.91 2.40 0.00 3.51
368 369 8.995906 GTTTTATTTCGCAATGTATACAGACAC 58.004 33.333 11.91 0.31 30.52 3.67
386 387 2.124695 GGTTGGATGGTCGGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
388 389 2.609299 TTGGATGGTCGGCTCCCA 60.609 61.111 0.00 0.00 36.16 4.37
400 401 1.881925 CGGCTCCCACATCACTTTTCA 60.882 52.381 0.00 0.00 0.00 2.69
402 403 1.541588 GCTCCCACATCACTTTTCACC 59.458 52.381 0.00 0.00 0.00 4.02
410 412 5.221303 CCACATCACTTTTCACCAACTGATT 60.221 40.000 0.00 0.00 0.00 2.57
412 414 6.757947 CACATCACTTTTCACCAACTGATTTT 59.242 34.615 0.00 0.00 0.00 1.82
421 423 2.106857 ACCAACTGATTTTACCGGTCCA 59.893 45.455 12.40 0.00 0.00 4.02
428 430 3.181453 TGATTTTACCGGTCCACAGACAA 60.181 43.478 12.40 0.00 45.48 3.18
434 436 0.719465 CGGTCCACAGACAAATACGC 59.281 55.000 0.00 0.00 45.48 4.42
436 438 2.000447 GGTCCACAGACAAATACGCTC 59.000 52.381 0.00 0.00 45.48 5.03
437 439 2.000447 GTCCACAGACAAATACGCTCC 59.000 52.381 0.00 0.00 42.99 4.70
440 442 0.108329 ACAGACAAATACGCTCCCCG 60.108 55.000 0.00 0.00 44.21 5.73
788 821 0.700269 ATGACATGATGCCCCCTCCT 60.700 55.000 0.00 0.00 0.00 3.69
815 848 2.444895 ATCTCCGCCACCTCCTCC 60.445 66.667 0.00 0.00 0.00 4.30
902 935 3.226347 GCACTTGCACAACGTATCTTTC 58.774 45.455 0.00 0.00 41.59 2.62
903 936 3.058914 GCACTTGCACAACGTATCTTTCT 60.059 43.478 0.00 0.00 41.59 2.52
905 938 5.510671 CACTTGCACAACGTATCTTTCTTT 58.489 37.500 0.00 0.00 0.00 2.52
911 944 3.751698 ACAACGTATCTTTCTTTCCAGCC 59.248 43.478 0.00 0.00 0.00 4.85
913 946 2.572104 ACGTATCTTTCTTTCCAGCCCT 59.428 45.455 0.00 0.00 0.00 5.19
914 947 3.198872 CGTATCTTTCTTTCCAGCCCTC 58.801 50.000 0.00 0.00 0.00 4.30
915 948 2.409948 ATCTTTCTTTCCAGCCCTCG 57.590 50.000 0.00 0.00 0.00 4.63
917 950 1.303317 TTTCTTTCCAGCCCTCGCC 60.303 57.895 0.00 0.00 34.57 5.54
970 1019 0.380378 AGCTCGTCTTGCTCGATCTC 59.620 55.000 0.00 0.00 35.67 2.75
1192 1265 2.028930 TCTTCTTCGTTTGCTCCTCCTC 60.029 50.000 0.00 0.00 0.00 3.71
1244 1324 0.234106 GCGATCATGTGCCTGATTCG 59.766 55.000 0.00 0.00 36.01 3.34
1280 1364 3.950395 AGCTGACTTTTGCTTCTTTGAGT 59.050 39.130 0.00 0.00 35.86 3.41
1318 1451 4.342092 ACTGATTATTATTGTTGCCTGCCC 59.658 41.667 0.00 0.00 0.00 5.36
1430 1573 1.525995 AACAACTCTGCACCACCCG 60.526 57.895 0.00 0.00 0.00 5.28
1492 1652 2.323968 TCAGTGTTGCAGCACTAACA 57.676 45.000 32.01 18.00 46.81 2.41
1515 1675 4.083581 ACACAGCGATGCTTGTTTTATC 57.916 40.909 0.00 0.00 36.40 1.75
1516 1676 3.753272 ACACAGCGATGCTTGTTTTATCT 59.247 39.130 0.00 0.00 36.40 1.98
1517 1677 4.142816 ACACAGCGATGCTTGTTTTATCTC 60.143 41.667 0.00 0.00 36.40 2.75
1523 1683 6.543831 AGCGATGCTTGTTTTATCTCCTTATT 59.456 34.615 0.00 0.00 33.89 1.40
1656 1822 2.874701 TGCAGTCAAGCAAAAGTCTCTC 59.125 45.455 0.00 0.00 42.46 3.20
1664 1830 5.760253 TCAAGCAAAAGTCTCTCCTAAACTG 59.240 40.000 0.00 0.00 0.00 3.16
1665 1831 5.552870 AGCAAAAGTCTCTCCTAAACTGA 57.447 39.130 0.00 0.00 0.00 3.41
1668 1834 6.828785 AGCAAAAGTCTCTCCTAAACTGAAAA 59.171 34.615 0.00 0.00 0.00 2.29
1693 1859 8.345724 ACTTGCTATCTTTGTTTTCATCAGAT 57.654 30.769 0.00 0.00 35.60 2.90
1705 1871 4.944962 TTCATCAGATTTTACCACGCAG 57.055 40.909 0.00 0.00 0.00 5.18
1713 1879 2.552599 TTTACCACGCAGGACATCAA 57.447 45.000 0.93 0.00 41.22 2.57
1735 1901 2.040544 CCAAATCGGTGCGCCTCTT 61.041 57.895 15.69 4.50 0.00 2.85
1738 1904 1.298859 AAATCGGTGCGCCTCTTGTC 61.299 55.000 15.69 0.00 0.00 3.18
1749 1915 0.318441 CCTCTTGTCGTTCCTGCTGA 59.682 55.000 0.00 0.00 0.00 4.26
1799 1965 2.360209 CCTTTCTCCTCTCCCTCTGGAT 60.360 54.545 0.00 0.00 40.80 3.41
1815 1981 3.058450 CTGGATCTATCTGCGAGCAAAG 58.942 50.000 0.00 0.00 0.00 2.77
1869 2043 7.033185 AGGTTAAAAATATTGTCAATGGCGAC 58.967 34.615 8.39 0.00 36.40 5.19
1880 2054 6.156748 TGTCAATGGCGACTAACAGTATAT 57.843 37.500 0.00 0.00 36.82 0.86
1881 2055 6.578944 TGTCAATGGCGACTAACAGTATATT 58.421 36.000 0.00 0.00 36.82 1.28
1882 2056 7.718525 TGTCAATGGCGACTAACAGTATATTA 58.281 34.615 0.00 0.00 36.82 0.98
1883 2057 8.364894 TGTCAATGGCGACTAACAGTATATTAT 58.635 33.333 0.00 0.00 36.82 1.28
1884 2058 8.648097 GTCAATGGCGACTAACAGTATATTATG 58.352 37.037 0.00 0.00 32.92 1.90
1885 2059 8.364894 TCAATGGCGACTAACAGTATATTATGT 58.635 33.333 0.00 0.00 0.00 2.29
1886 2060 8.988934 CAATGGCGACTAACAGTATATTATGTT 58.011 33.333 9.41 9.41 42.15 2.71
1887 2061 9.555727 AATGGCGACTAACAGTATATTATGTTT 57.444 29.630 9.67 0.00 40.09 2.83
1888 2062 8.951787 TGGCGACTAACAGTATATTATGTTTT 57.048 30.769 9.67 0.52 40.09 2.43
1889 2063 9.386010 TGGCGACTAACAGTATATTATGTTTTT 57.614 29.630 9.67 0.25 40.09 1.94
1936 2110 6.931838 TGTTATGAGTTTACCTCGAAGATGT 58.068 36.000 0.00 0.00 43.64 3.06
1942 2116 2.607668 TACCTCGAAGATGTGCGCCG 62.608 60.000 4.18 0.00 35.81 6.46
1944 2118 2.048597 TCGAAGATGTGCGCCGTT 60.049 55.556 4.18 0.00 0.00 4.44
1947 2121 2.031919 AAGATGTGCGCCGTTCCA 59.968 55.556 4.18 0.00 0.00 3.53
1955 2129 2.953821 CGCCGTTCCACTGCATTT 59.046 55.556 0.00 0.00 0.00 2.32
1962 2136 4.363999 CCGTTCCACTGCATTTTGTTTAA 58.636 39.130 0.00 0.00 0.00 1.52
1999 2175 4.025061 GCTAAAGCATCATGTGTAGAGCTG 60.025 45.833 0.00 0.00 41.59 4.24
2002 2178 2.158986 AGCATCATGTGTAGAGCTGACC 60.159 50.000 0.00 0.00 0.00 4.02
2020 2196 1.134159 ACCTCTCAGCAATCATCAGGC 60.134 52.381 0.00 0.00 0.00 4.85
2031 2207 5.706369 AGCAATCATCAGGCATCTAGAAATC 59.294 40.000 0.00 0.00 0.00 2.17
2032 2208 5.472478 GCAATCATCAGGCATCTAGAAATCA 59.528 40.000 0.00 0.00 0.00 2.57
2034 2210 7.361127 CAATCATCAGGCATCTAGAAATCAAC 58.639 38.462 0.00 0.00 0.00 3.18
2035 2211 5.993055 TCATCAGGCATCTAGAAATCAACA 58.007 37.500 0.00 0.00 0.00 3.33
2038 2214 8.212995 TCATCAGGCATCTAGAAATCAACAATA 58.787 33.333 0.00 0.00 0.00 1.90
2055 2231 8.027440 TCAACAATAATTATTTTTGCCTGCAC 57.973 30.769 23.42 0.00 34.82 4.57
2063 2248 0.179043 TTTTGCCTGCACGGACTGTA 60.179 50.000 6.40 0.00 33.16 2.74
2065 2250 0.602638 TTGCCTGCACGGACTGTAAG 60.603 55.000 6.40 0.00 42.29 2.34
2093 2278 3.503748 GGATGAAACAGACTCAAACCAGG 59.496 47.826 0.00 0.00 0.00 4.45
2094 2279 3.644966 TGAAACAGACTCAAACCAGGT 57.355 42.857 0.00 0.00 0.00 4.00
2118 2307 4.801330 TGGTACCAGACAGTCAAGTATG 57.199 45.455 11.60 0.00 0.00 2.39
2139 2328 6.795144 ATGACTGAGAAGTGAGATCTGATT 57.205 37.500 0.00 0.00 0.00 2.57
2143 2332 7.395772 TGACTGAGAAGTGAGATCTGATTAGTT 59.604 37.037 0.00 0.00 0.00 2.24
2152 2341 6.093219 GTGAGATCTGATTAGTTGTTGCACAT 59.907 38.462 0.00 0.00 0.00 3.21
2160 2479 9.838975 CTGATTAGTTGTTGCACATGTTAATAA 57.161 29.630 0.00 0.00 0.00 1.40
2239 2559 7.822161 ATATGCAAAGTTCCTTATATGTGCA 57.178 32.000 0.00 0.00 44.10 4.57
2242 2562 5.418524 TGCAAAGTTCCTTATATGTGCACAT 59.581 36.000 33.20 33.20 35.93 3.21
2243 2563 6.601217 TGCAAAGTTCCTTATATGTGCACATA 59.399 34.615 35.03 35.03 42.38 2.29
2244 2564 6.912591 GCAAAGTTCCTTATATGTGCACATAC 59.087 38.462 35.53 25.14 41.15 2.39
2246 2566 8.623903 CAAAGTTCCTTATATGTGCACATACAT 58.376 33.333 35.53 25.94 41.15 2.29
2247 2567 7.734924 AGTTCCTTATATGTGCACATACATG 57.265 36.000 35.53 26.77 41.15 3.21
2248 2568 6.712095 AGTTCCTTATATGTGCACATACATGG 59.288 38.462 35.53 32.72 41.15 3.66
2249 2569 6.432403 TCCTTATATGTGCACATACATGGA 57.568 37.500 32.98 32.98 41.15 3.41
2251 2571 7.460910 TCCTTATATGTGCACATACATGGAAT 58.539 34.615 33.84 24.08 41.15 3.01
2252 2572 7.944000 TCCTTATATGTGCACATACATGGAATT 59.056 33.333 33.84 22.76 41.15 2.17
2282 2613 1.278238 CTTACCGTCATGCGTCTTCC 58.722 55.000 8.37 0.00 39.32 3.46
2376 2707 3.119101 TCAGAGAAATACCGCTTGAGGAC 60.119 47.826 0.00 0.00 34.73 3.85
2482 2813 3.924686 CCAAACTCTGTACCATGTCGTAC 59.075 47.826 5.57 5.57 39.28 3.67
2490 2821 5.629020 TCTGTACCATGTCGTACGTTAAAAC 59.371 40.000 16.05 6.12 41.30 2.43
2502 2847 8.257841 GTCGTACGTTAAAACTGCTTATATCTG 58.742 37.037 16.05 0.00 0.00 2.90
2504 2853 6.978343 ACGTTAAAACTGCTTATATCTGCA 57.022 33.333 3.12 3.12 37.63 4.41
2554 2903 0.031414 TAGAGGCCCAAGGGAGGTAC 60.031 60.000 9.92 0.00 37.50 3.34
2608 2957 4.581868 ACATTTCCTTTGATGCAAATGGG 58.418 39.130 8.03 0.36 39.53 4.00
2613 2962 2.564062 CCTTTGATGCAAATGGGTCTGT 59.436 45.455 0.00 0.00 32.70 3.41
2623 2972 1.207791 ATGGGTCTGTTGGCCTAGAG 58.792 55.000 3.32 4.23 0.00 2.43
2626 2975 1.066071 GGGTCTGTTGGCCTAGAGAAC 60.066 57.143 19.17 19.17 0.00 3.01
2804 3153 1.133407 GTCAGGAGGCTAAGAGTGTCG 59.867 57.143 0.00 0.00 0.00 4.35
2830 3179 0.036294 CCCCGAAAACTGAGGACCTC 60.036 60.000 15.13 15.13 0.00 3.85
2896 3245 1.280421 AGAGGAATGCAAGGGTGAGTC 59.720 52.381 0.00 0.00 0.00 3.36
2897 3246 1.003580 GAGGAATGCAAGGGTGAGTCA 59.996 52.381 0.00 0.00 0.00 3.41
2935 3284 9.601810 TTAACCAGCAGAGGAAATAGAGATATA 57.398 33.333 0.00 0.00 0.00 0.86
2991 3340 9.462174 TCACTGTTTGCTATTAGAATTTGTTTG 57.538 29.630 0.00 0.00 0.00 2.93
3127 3477 1.637553 AGAGTGCACATGGGAAAGGAT 59.362 47.619 21.04 0.00 0.00 3.24
3128 3478 1.747355 GAGTGCACATGGGAAAGGATG 59.253 52.381 21.04 0.00 0.00 3.51
3130 3480 2.170166 GTGCACATGGGAAAGGATGAA 58.830 47.619 13.17 0.00 0.00 2.57
3190 3540 9.988815 ATTTTAAATTGTGCTTTATGTACCACA 57.011 25.926 0.00 0.00 36.51 4.17
3191 3541 8.804688 TTTAAATTGTGCTTTATGTACCACAC 57.195 30.769 0.57 0.00 37.87 3.82
3192 3542 4.678509 ATTGTGCTTTATGTACCACACG 57.321 40.909 0.57 0.00 37.87 4.49
3193 3543 3.114668 TGTGCTTTATGTACCACACGT 57.885 42.857 0.00 0.00 33.66 4.49
3194 3544 3.468770 TGTGCTTTATGTACCACACGTT 58.531 40.909 0.00 0.00 33.66 3.99
3195 3545 3.248841 TGTGCTTTATGTACCACACGTTG 59.751 43.478 0.00 0.00 33.66 4.10
3196 3546 2.224549 TGCTTTATGTACCACACGTTGC 59.775 45.455 0.00 0.00 0.00 4.17
3197 3547 2.224549 GCTTTATGTACCACACGTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
3198 3548 3.119990 GCTTTATGTACCACACGTTGCAT 60.120 43.478 0.00 0.00 0.00 3.96
3199 3549 4.093703 GCTTTATGTACCACACGTTGCATA 59.906 41.667 0.00 0.00 0.00 3.14
3200 3550 5.391097 GCTTTATGTACCACACGTTGCATAA 60.391 40.000 4.90 4.90 33.28 1.90
3201 3551 6.676943 GCTTTATGTACCACACGTTGCATAAT 60.677 38.462 8.63 0.00 34.24 1.28
3202 3552 6.745159 TTATGTACCACACGTTGCATAATT 57.255 33.333 4.90 0.00 31.70 1.40
3203 3553 5.637006 ATGTACCACACGTTGCATAATTT 57.363 34.783 0.00 0.00 0.00 1.82
3204 3554 4.788690 TGTACCACACGTTGCATAATTTG 58.211 39.130 0.00 0.00 0.00 2.32
3234 3584 3.127548 CAGAGCCACATAACATGTTCCAC 59.872 47.826 15.85 0.28 42.70 4.02
3235 3585 2.423538 GAGCCACATAACATGTTCCACC 59.576 50.000 15.85 0.31 42.70 4.61
3256 3607 5.016831 ACCTTTTGCTTTTATCTGGTAGGG 58.983 41.667 0.00 0.00 0.00 3.53
3280 3631 3.131396 AGCAGAATAAACCCGATTAGCG 58.869 45.455 0.00 0.00 40.47 4.26
3286 3637 6.089551 CAGAATAAACCCGATTAGCGTGATAG 59.910 42.308 0.00 0.00 38.67 2.08
3290 3641 2.696707 ACCCGATTAGCGTGATAGGAAA 59.303 45.455 0.00 0.00 38.67 3.13
3292 3643 3.741344 CCCGATTAGCGTGATAGGAAAAG 59.259 47.826 0.00 0.00 38.67 2.27
3293 3644 4.500887 CCCGATTAGCGTGATAGGAAAAGA 60.501 45.833 0.00 0.00 38.67 2.52
3294 3645 5.047847 CCGATTAGCGTGATAGGAAAAGAA 58.952 41.667 0.00 0.00 38.67 2.52
3313 3664 9.155975 GAAAAGAATTCAGAACTATACTCAGCA 57.844 33.333 8.44 0.00 0.00 4.41
3390 3741 5.880341 ACTTCGCTAAATCCTAAATGCAAC 58.120 37.500 0.00 0.00 0.00 4.17
3397 3749 7.267857 GCTAAATCCTAAATGCAACATCCTTT 58.732 34.615 0.00 0.00 0.00 3.11
3432 3798 4.946784 AGACAGTGAATTCGTTATTGCC 57.053 40.909 0.00 0.00 0.00 4.52
3486 3852 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
3487 3853 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
3488 3854 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
3489 3855 1.607148 GCTTTCGCCCCGCTTTATATT 59.393 47.619 0.00 0.00 0.00 1.28
3490 3856 2.809696 GCTTTCGCCCCGCTTTATATTA 59.190 45.455 0.00 0.00 0.00 0.98
3491 3857 3.439129 GCTTTCGCCCCGCTTTATATTAT 59.561 43.478 0.00 0.00 0.00 1.28
3492 3858 4.632688 GCTTTCGCCCCGCTTTATATTATA 59.367 41.667 0.00 0.00 0.00 0.98
3493 3859 5.122711 GCTTTCGCCCCGCTTTATATTATAA 59.877 40.000 0.00 0.00 0.00 0.98
3494 3860 6.348704 GCTTTCGCCCCGCTTTATATTATAAA 60.349 38.462 8.26 8.26 0.00 1.40
3495 3861 6.730960 TTCGCCCCGCTTTATATTATAAAG 57.269 37.500 23.28 23.28 37.53 1.85
3509 3875 4.529109 TTATAAAGCAAACCACCCAAGC 57.471 40.909 0.00 0.00 0.00 4.01
3510 3876 1.044611 TAAAGCAAACCACCCAAGCC 58.955 50.000 0.00 0.00 0.00 4.35
3511 3877 0.980231 AAAGCAAACCACCCAAGCCA 60.980 50.000 0.00 0.00 0.00 4.75
3512 3878 0.980231 AAGCAAACCACCCAAGCCAA 60.980 50.000 0.00 0.00 0.00 4.52
3513 3879 0.980231 AGCAAACCACCCAAGCCAAA 60.980 50.000 0.00 0.00 0.00 3.28
3514 3880 0.813610 GCAAACCACCCAAGCCAAAC 60.814 55.000 0.00 0.00 0.00 2.93
3515 3881 0.539051 CAAACCACCCAAGCCAAACA 59.461 50.000 0.00 0.00 0.00 2.83
3516 3882 1.140652 CAAACCACCCAAGCCAAACAT 59.859 47.619 0.00 0.00 0.00 2.71
3517 3883 1.047801 AACCACCCAAGCCAAACATC 58.952 50.000 0.00 0.00 0.00 3.06
3518 3884 0.831711 ACCACCCAAGCCAAACATCC 60.832 55.000 0.00 0.00 0.00 3.51
3519 3885 0.831288 CCACCCAAGCCAAACATCCA 60.831 55.000 0.00 0.00 0.00 3.41
3520 3886 1.047002 CACCCAAGCCAAACATCCAA 58.953 50.000 0.00 0.00 0.00 3.53
3521 3887 1.047801 ACCCAAGCCAAACATCCAAC 58.952 50.000 0.00 0.00 0.00 3.77
3522 3888 1.047002 CCCAAGCCAAACATCCAACA 58.953 50.000 0.00 0.00 0.00 3.33
3523 3889 1.415659 CCCAAGCCAAACATCCAACAA 59.584 47.619 0.00 0.00 0.00 2.83
3524 3890 2.548493 CCCAAGCCAAACATCCAACAAG 60.548 50.000 0.00 0.00 0.00 3.16
3525 3891 2.548493 CCAAGCCAAACATCCAACAAGG 60.548 50.000 0.00 0.00 39.47 3.61
3526 3892 2.086610 AGCCAAACATCCAACAAGGT 57.913 45.000 0.00 0.00 39.02 3.50
3527 3893 2.397597 AGCCAAACATCCAACAAGGTT 58.602 42.857 0.00 0.00 39.02 3.50
3528 3894 2.365293 AGCCAAACATCCAACAAGGTTC 59.635 45.455 0.00 0.00 39.02 3.62
3529 3895 2.102252 GCCAAACATCCAACAAGGTTCA 59.898 45.455 0.00 0.00 39.02 3.18
3530 3896 3.431486 GCCAAACATCCAACAAGGTTCAA 60.431 43.478 0.00 0.00 39.02 2.69
3531 3897 4.764172 CCAAACATCCAACAAGGTTCAAA 58.236 39.130 0.00 0.00 39.02 2.69
3532 3898 4.570369 CCAAACATCCAACAAGGTTCAAAC 59.430 41.667 0.00 0.00 39.02 2.93
3533 3899 5.174395 CAAACATCCAACAAGGTTCAAACA 58.826 37.500 0.00 0.00 39.02 2.83
3534 3900 4.385358 ACATCCAACAAGGTTCAAACAC 57.615 40.909 0.00 0.00 39.02 3.32
3535 3901 3.766591 ACATCCAACAAGGTTCAAACACA 59.233 39.130 0.00 0.00 39.02 3.72
3536 3902 3.859411 TCCAACAAGGTTCAAACACAC 57.141 42.857 0.00 0.00 39.02 3.82
3537 3903 3.157881 TCCAACAAGGTTCAAACACACA 58.842 40.909 0.00 0.00 39.02 3.72
3538 3904 3.057174 TCCAACAAGGTTCAAACACACAC 60.057 43.478 0.00 0.00 39.02 3.82
3539 3905 3.305676 CCAACAAGGTTCAAACACACACA 60.306 43.478 0.00 0.00 0.00 3.72
3540 3906 3.569250 ACAAGGTTCAAACACACACAC 57.431 42.857 0.00 0.00 0.00 3.82
3541 3907 2.887783 ACAAGGTTCAAACACACACACA 59.112 40.909 0.00 0.00 0.00 3.72
3542 3908 3.241701 CAAGGTTCAAACACACACACAC 58.758 45.455 0.00 0.00 0.00 3.82
3543 3909 2.509569 AGGTTCAAACACACACACACA 58.490 42.857 0.00 0.00 0.00 3.72
3544 3910 2.227865 AGGTTCAAACACACACACACAC 59.772 45.455 0.00 0.00 0.00 3.82
3545 3911 2.030717 GGTTCAAACACACACACACACA 60.031 45.455 0.00 0.00 0.00 3.72
3546 3912 3.551046 GGTTCAAACACACACACACACAA 60.551 43.478 0.00 0.00 0.00 3.33
3547 3913 3.550950 TCAAACACACACACACACAAG 57.449 42.857 0.00 0.00 0.00 3.16
3548 3914 2.881513 TCAAACACACACACACACAAGT 59.118 40.909 0.00 0.00 0.00 3.16
3549 3915 3.058570 TCAAACACACACACACACAAGTC 60.059 43.478 0.00 0.00 0.00 3.01
3550 3916 2.472695 ACACACACACACACAAGTCT 57.527 45.000 0.00 0.00 0.00 3.24
3551 3917 2.346803 ACACACACACACACAAGTCTC 58.653 47.619 0.00 0.00 0.00 3.36
3552 3918 2.289382 ACACACACACACACAAGTCTCA 60.289 45.455 0.00 0.00 0.00 3.27
3553 3919 2.094258 CACACACACACACAAGTCTCAC 59.906 50.000 0.00 0.00 0.00 3.51
3554 3920 2.028112 ACACACACACACAAGTCTCACT 60.028 45.455 0.00 0.00 0.00 3.41
3555 3921 2.604914 CACACACACACAAGTCTCACTC 59.395 50.000 0.00 0.00 0.00 3.51
3556 3922 2.233676 ACACACACACAAGTCTCACTCA 59.766 45.455 0.00 0.00 0.00 3.41
3557 3923 2.604914 CACACACACAAGTCTCACTCAC 59.395 50.000 0.00 0.00 0.00 3.51
3558 3924 2.233676 ACACACACAAGTCTCACTCACA 59.766 45.455 0.00 0.00 0.00 3.58
3559 3925 2.604914 CACACACAAGTCTCACTCACAC 59.395 50.000 0.00 0.00 0.00 3.82
3560 3926 2.233676 ACACACAAGTCTCACTCACACA 59.766 45.455 0.00 0.00 0.00 3.72
3561 3927 2.604914 CACACAAGTCTCACTCACACAC 59.395 50.000 0.00 0.00 0.00 3.82
3562 3928 2.233676 ACACAAGTCTCACTCACACACA 59.766 45.455 0.00 0.00 0.00 3.72
3563 3929 3.261580 CACAAGTCTCACTCACACACAA 58.738 45.455 0.00 0.00 0.00 3.33
3564 3930 3.873361 CACAAGTCTCACTCACACACAAT 59.127 43.478 0.00 0.00 0.00 2.71
3565 3931 3.873361 ACAAGTCTCACTCACACACAATG 59.127 43.478 0.00 0.00 0.00 2.82
3566 3932 3.827008 AGTCTCACTCACACACAATGT 57.173 42.857 0.00 0.00 44.81 2.71
3567 3933 4.937201 AGTCTCACTCACACACAATGTA 57.063 40.909 0.00 0.00 40.64 2.29
3568 3934 4.876125 AGTCTCACTCACACACAATGTAG 58.124 43.478 0.00 0.00 40.64 2.74
3569 3935 3.430218 GTCTCACTCACACACAATGTAGC 59.570 47.826 0.00 0.00 40.64 3.58
3570 3936 2.403259 TCACTCACACACAATGTAGCG 58.597 47.619 0.00 0.00 40.64 4.26
3571 3937 2.035321 TCACTCACACACAATGTAGCGA 59.965 45.455 0.00 0.00 40.64 4.93
3572 3938 2.799978 CACTCACACACAATGTAGCGAA 59.200 45.455 0.00 0.00 40.64 4.70
3573 3939 3.433274 CACTCACACACAATGTAGCGAAT 59.567 43.478 0.00 0.00 40.64 3.34
3574 3940 4.625311 CACTCACACACAATGTAGCGAATA 59.375 41.667 0.00 0.00 40.64 1.75
3575 3941 4.864806 ACTCACACACAATGTAGCGAATAG 59.135 41.667 0.00 0.00 40.64 1.73
3576 3942 4.180817 TCACACACAATGTAGCGAATAGG 58.819 43.478 0.00 0.00 40.64 2.57
3577 3943 3.309682 CACACACAATGTAGCGAATAGGG 59.690 47.826 0.00 0.00 40.64 3.53
3578 3944 3.055385 ACACACAATGTAGCGAATAGGGT 60.055 43.478 0.00 0.00 40.88 4.34
3579 3945 3.938963 CACACAATGTAGCGAATAGGGTT 59.061 43.478 0.00 0.00 0.00 4.11
3580 3946 5.113383 CACACAATGTAGCGAATAGGGTTA 58.887 41.667 0.00 0.00 0.00 2.85
3581 3947 5.583061 CACACAATGTAGCGAATAGGGTTAA 59.417 40.000 0.00 0.00 0.00 2.01
3582 3948 6.260050 CACACAATGTAGCGAATAGGGTTAAT 59.740 38.462 0.00 0.00 0.00 1.40
3583 3949 6.260050 ACACAATGTAGCGAATAGGGTTAATG 59.740 38.462 0.00 0.00 0.00 1.90
3584 3950 5.238650 ACAATGTAGCGAATAGGGTTAATGC 59.761 40.000 0.00 0.00 0.00 3.56
3585 3951 4.682778 TGTAGCGAATAGGGTTAATGCT 57.317 40.909 0.00 0.00 35.12 3.79
3586 3952 4.377021 TGTAGCGAATAGGGTTAATGCTG 58.623 43.478 0.00 0.00 32.72 4.41
3587 3953 3.838244 AGCGAATAGGGTTAATGCTGA 57.162 42.857 0.00 0.00 0.00 4.26
3588 3954 3.733337 AGCGAATAGGGTTAATGCTGAG 58.267 45.455 0.00 0.00 0.00 3.35
3589 3955 2.808543 GCGAATAGGGTTAATGCTGAGG 59.191 50.000 0.00 0.00 0.00 3.86
3590 3956 3.403038 CGAATAGGGTTAATGCTGAGGG 58.597 50.000 0.00 0.00 0.00 4.30
3591 3957 2.959465 ATAGGGTTAATGCTGAGGGC 57.041 50.000 0.00 0.00 42.22 5.19
3601 3967 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
3602 3968 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
3603 3969 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
3604 3970 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
3612 3978 4.500265 GCTCAACAAGCCCTGGAA 57.500 55.556 0.00 0.00 45.92 3.53
3613 3979 2.732289 GCTCAACAAGCCCTGGAAA 58.268 52.632 0.00 0.00 45.92 3.13
3614 3980 0.315251 GCTCAACAAGCCCTGGAAAC 59.685 55.000 0.00 0.00 45.92 2.78
3615 3981 1.691196 CTCAACAAGCCCTGGAAACA 58.309 50.000 0.00 0.00 39.59 2.83
3616 3982 2.031120 CTCAACAAGCCCTGGAAACAA 58.969 47.619 0.00 0.00 42.06 2.83
3617 3983 2.430332 CTCAACAAGCCCTGGAAACAAA 59.570 45.455 0.00 0.00 42.06 2.83
3618 3984 2.834549 TCAACAAGCCCTGGAAACAAAA 59.165 40.909 0.00 0.00 42.06 2.44
3619 3985 2.935849 CAACAAGCCCTGGAAACAAAAC 59.064 45.455 0.00 0.00 42.06 2.43
3620 3986 2.183679 ACAAGCCCTGGAAACAAAACA 58.816 42.857 0.00 0.00 42.06 2.83
3621 3987 2.569404 ACAAGCCCTGGAAACAAAACAA 59.431 40.909 0.00 0.00 42.06 2.83
3622 3988 2.935849 CAAGCCCTGGAAACAAAACAAC 59.064 45.455 0.00 0.00 42.06 3.32
3623 3989 2.183679 AGCCCTGGAAACAAAACAACA 58.816 42.857 0.00 0.00 42.06 3.33
3624 3990 2.093711 AGCCCTGGAAACAAAACAACAC 60.094 45.455 0.00 0.00 42.06 3.32
3625 3991 2.354203 GCCCTGGAAACAAAACAACACA 60.354 45.455 0.00 0.00 42.06 3.72
3626 3992 3.258228 CCCTGGAAACAAAACAACACAC 58.742 45.455 0.00 0.00 42.06 3.82
3627 3993 3.056179 CCCTGGAAACAAAACAACACACT 60.056 43.478 0.00 0.00 42.06 3.55
3628 3994 4.173256 CCTGGAAACAAAACAACACACTC 58.827 43.478 0.00 0.00 42.06 3.51
3629 3995 4.321601 CCTGGAAACAAAACAACACACTCA 60.322 41.667 0.00 0.00 42.06 3.41
3630 3996 4.551388 TGGAAACAAAACAACACACTCAC 58.449 39.130 0.00 0.00 37.44 3.51
3631 3997 4.038042 TGGAAACAAAACAACACACTCACA 59.962 37.500 0.00 0.00 37.44 3.58
3632 3998 4.384547 GGAAACAAAACAACACACTCACAC 59.615 41.667 0.00 0.00 0.00 3.82
3633 3999 4.576216 AACAAAACAACACACTCACACA 57.424 36.364 0.00 0.00 0.00 3.72
3634 4000 3.896122 ACAAAACAACACACTCACACAC 58.104 40.909 0.00 0.00 0.00 3.82
3635 4001 3.316588 ACAAAACAACACACTCACACACA 59.683 39.130 0.00 0.00 0.00 3.72
3636 4002 4.022416 ACAAAACAACACACTCACACACAT 60.022 37.500 0.00 0.00 0.00 3.21
3637 4003 4.355543 AAACAACACACTCACACACATC 57.644 40.909 0.00 0.00 0.00 3.06
3638 4004 2.984562 ACAACACACTCACACACATCA 58.015 42.857 0.00 0.00 0.00 3.07
3639 4005 3.342719 ACAACACACTCACACACATCAA 58.657 40.909 0.00 0.00 0.00 2.57
3640 4006 3.126858 ACAACACACTCACACACATCAAC 59.873 43.478 0.00 0.00 0.00 3.18
3641 4007 2.288666 ACACACTCACACACATCAACC 58.711 47.619 0.00 0.00 0.00 3.77
3642 4008 1.603802 CACACTCACACACATCAACCC 59.396 52.381 0.00 0.00 0.00 4.11
3643 4009 1.211703 ACACTCACACACATCAACCCA 59.788 47.619 0.00 0.00 0.00 4.51
3644 4010 2.158623 ACACTCACACACATCAACCCAT 60.159 45.455 0.00 0.00 0.00 4.00
3645 4011 2.886523 CACTCACACACATCAACCCATT 59.113 45.455 0.00 0.00 0.00 3.16
3646 4012 3.318839 CACTCACACACATCAACCCATTT 59.681 43.478 0.00 0.00 0.00 2.32
3647 4013 3.318839 ACTCACACACATCAACCCATTTG 59.681 43.478 0.00 0.00 36.42 2.32
3648 4014 2.627221 TCACACACATCAACCCATTTGG 59.373 45.455 0.00 0.00 41.37 3.28
3649 4015 2.627221 CACACACATCAACCCATTTGGA 59.373 45.455 0.00 0.00 37.39 3.53
3650 4016 2.627699 ACACACATCAACCCATTTGGAC 59.372 45.455 0.00 0.00 37.39 4.02
3651 4017 2.627221 CACACATCAACCCATTTGGACA 59.373 45.455 0.00 0.00 37.39 4.02
3652 4018 3.069300 CACACATCAACCCATTTGGACAA 59.931 43.478 0.00 0.00 37.39 3.18
3653 4019 3.069443 ACACATCAACCCATTTGGACAAC 59.931 43.478 0.00 0.00 37.39 3.32
3654 4020 3.321682 CACATCAACCCATTTGGACAACT 59.678 43.478 0.00 0.00 37.39 3.16
3655 4021 3.573967 ACATCAACCCATTTGGACAACTC 59.426 43.478 0.00 0.00 37.39 3.01
3656 4022 3.304911 TCAACCCATTTGGACAACTCA 57.695 42.857 0.00 0.00 37.39 3.41
3657 4023 3.843422 TCAACCCATTTGGACAACTCAT 58.157 40.909 0.00 0.00 37.39 2.90
3658 4024 3.573538 TCAACCCATTTGGACAACTCATG 59.426 43.478 0.00 0.00 37.39 3.07
3659 4025 2.528564 ACCCATTTGGACAACTCATGG 58.471 47.619 0.00 7.09 37.39 3.66
3660 4026 2.158325 ACCCATTTGGACAACTCATGGT 60.158 45.455 11.32 1.24 37.39 3.55
3661 4027 2.899256 CCCATTTGGACAACTCATGGTT 59.101 45.455 11.32 0.00 36.47 3.67
3662 4028 4.085733 CCCATTTGGACAACTCATGGTTA 58.914 43.478 11.32 0.00 35.03 2.85
3663 4029 4.526262 CCCATTTGGACAACTCATGGTTAA 59.474 41.667 11.32 0.00 35.03 2.01
3670 4036 6.299922 TGGACAACTCATGGTTAATGTACAA 58.700 36.000 0.00 0.00 37.56 2.41
3673 4039 7.360946 GGACAACTCATGGTTAATGTACAAGTC 60.361 40.741 0.00 0.00 37.56 3.01
3695 4061 4.281435 TCGTCAATTAACCACCTGACACTA 59.719 41.667 0.00 0.00 38.46 2.74
3714 4080 5.070001 CACTAATGTGTCCTTGGAAAAGGA 58.930 41.667 3.04 3.04 39.67 3.36
3723 4089 3.626028 CTTGGAAAAGGACAAGGAACG 57.374 47.619 0.00 0.00 40.20 3.95
3733 4099 3.751698 AGGACAAGGAACGTAAGATTTGC 59.248 43.478 0.00 0.00 43.62 3.68
3736 4102 3.185797 ACAAGGAACGTAAGATTTGCGAC 59.814 43.478 6.31 0.90 41.43 5.19
3737 4103 3.034721 AGGAACGTAAGATTTGCGACA 57.965 42.857 6.31 0.00 41.43 4.35
3749 4116 4.814234 AGATTTGCGACACAACTAAACTGA 59.186 37.500 0.00 0.00 38.23 3.41
3759 4126 4.582656 CACAACTAAACTGACCCATTTGGA 59.417 41.667 0.00 0.00 37.39 3.53
3763 4130 5.640147 ACTAAACTGACCCATTTGGATTCA 58.360 37.500 0.00 0.00 37.39 2.57
3793 4160 5.687285 CAGACAACTCATGGTTAAAGCAAAC 59.313 40.000 0.00 0.00 36.23 2.93
3794 4161 5.359576 AGACAACTCATGGTTAAAGCAAACA 59.640 36.000 0.00 0.00 38.49 2.83
3795 4162 6.040842 AGACAACTCATGGTTAAAGCAAACAT 59.959 34.615 0.00 0.00 45.81 2.71
3796 4163 7.230510 AGACAACTCATGGTTAAAGCAAACATA 59.769 33.333 0.00 0.00 42.91 2.29
3797 4164 7.895759 ACAACTCATGGTTAAAGCAAACATAT 58.104 30.769 0.00 0.00 42.91 1.78
3798 4165 7.814107 ACAACTCATGGTTAAAGCAAACATATG 59.186 33.333 0.00 0.00 42.91 1.78
3799 4166 6.332630 ACTCATGGTTAAAGCAAACATATGC 58.667 36.000 1.58 0.00 42.91 3.14
3800 4167 6.071447 ACTCATGGTTAAAGCAAACATATGCA 60.071 34.615 1.58 0.00 42.91 3.96
3801 4168 6.695429 TCATGGTTAAAGCAAACATATGCAA 58.305 32.000 1.58 0.00 42.91 4.08
3802 4169 7.157347 TCATGGTTAAAGCAAACATATGCAAA 58.843 30.769 1.58 0.00 42.91 3.68
3803 4170 7.658982 TCATGGTTAAAGCAAACATATGCAAAA 59.341 29.630 1.58 0.00 42.91 2.44
3804 4171 7.958567 CATGGTTAAAGCAAACATATGCAAAAG 59.041 33.333 1.58 0.00 42.91 2.27
3809 4176 4.525411 GCAAACATATGCAAAAGGATGC 57.475 40.909 1.58 0.00 45.70 3.91
3843 4210 3.960571 ACCATCTTGGGATTGACTCTTG 58.039 45.455 0.00 0.00 43.37 3.02
3852 4220 5.384336 TGGGATTGACTCTTGAATTTCACA 58.616 37.500 0.00 0.00 0.00 3.58
3889 4257 3.840666 AGGATCAGGAAACTAGCAACTGA 59.159 43.478 8.77 8.77 40.21 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.346365 GGAACCGTTCCGCTTCCT 59.654 61.111 14.56 0.00 38.23 3.36
12 13 2.677979 GCTTGGCGAGGAACCGTTC 61.678 63.158 3.44 2.37 0.00 3.95
13 14 2.668550 GCTTGGCGAGGAACCGTT 60.669 61.111 3.44 0.00 0.00 4.44
59 60 4.697756 TCCAGCGGCGGAAAGGTG 62.698 66.667 9.78 0.00 35.81 4.00
60 61 3.901797 CTTCCAGCGGCGGAAAGGT 62.902 63.158 20.80 0.00 44.42 3.50
61 62 3.127533 CTTCCAGCGGCGGAAAGG 61.128 66.667 20.80 11.02 44.42 3.11
62 63 2.876368 ATCCTTCCAGCGGCGGAAAG 62.876 60.000 20.80 16.80 44.42 2.62
63 64 2.966732 ATCCTTCCAGCGGCGGAAA 61.967 57.895 20.80 11.79 44.42 3.13
64 65 3.399181 ATCCTTCCAGCGGCGGAA 61.399 61.111 19.79 19.79 42.89 4.30
65 66 4.161295 CATCCTTCCAGCGGCGGA 62.161 66.667 9.78 5.57 0.00 5.54
71 72 1.146930 TCATCGCCATCCTTCCAGC 59.853 57.895 0.00 0.00 0.00 4.85
72 73 0.877649 CGTCATCGCCATCCTTCCAG 60.878 60.000 0.00 0.00 0.00 3.86
73 74 1.143838 CGTCATCGCCATCCTTCCA 59.856 57.895 0.00 0.00 0.00 3.53
74 75 0.876342 GTCGTCATCGCCATCCTTCC 60.876 60.000 0.00 0.00 36.96 3.46
75 76 1.209275 CGTCGTCATCGCCATCCTTC 61.209 60.000 0.00 0.00 36.96 3.46
76 77 1.226974 CGTCGTCATCGCCATCCTT 60.227 57.895 0.00 0.00 36.96 3.36
77 78 1.456196 ATCGTCGTCATCGCCATCCT 61.456 55.000 0.00 0.00 36.96 3.24
78 79 1.007271 ATCGTCGTCATCGCCATCC 60.007 57.895 0.00 0.00 36.96 3.51
79 80 1.278172 CCATCGTCGTCATCGCCATC 61.278 60.000 0.00 0.00 36.96 3.51
80 81 1.300156 CCATCGTCGTCATCGCCAT 60.300 57.895 0.00 0.00 36.96 4.40
81 82 2.104132 CCATCGTCGTCATCGCCA 59.896 61.111 0.00 0.00 36.96 5.69
82 83 3.330853 GCCATCGTCGTCATCGCC 61.331 66.667 0.00 0.00 36.96 5.54
83 84 1.951130 ATGCCATCGTCGTCATCGC 60.951 57.895 0.00 0.00 36.96 4.58
84 85 1.551503 CCATGCCATCGTCGTCATCG 61.552 60.000 0.00 0.00 38.55 3.84
85 86 0.249447 TCCATGCCATCGTCGTCATC 60.249 55.000 0.00 0.00 0.00 2.92
86 87 0.530650 GTCCATGCCATCGTCGTCAT 60.531 55.000 0.00 0.00 0.00 3.06
87 88 1.153647 GTCCATGCCATCGTCGTCA 60.154 57.895 0.00 0.00 0.00 4.35
88 89 2.230940 CGTCCATGCCATCGTCGTC 61.231 63.158 0.00 0.00 0.00 4.20
89 90 2.202743 CGTCCATGCCATCGTCGT 60.203 61.111 0.00 0.00 0.00 4.34
90 91 2.961721 CCGTCCATGCCATCGTCG 60.962 66.667 0.00 0.00 0.00 5.12
91 92 3.272334 GCCGTCCATGCCATCGTC 61.272 66.667 0.00 0.00 0.00 4.20
93 94 4.889856 TCGCCGTCCATGCCATCG 62.890 66.667 0.00 0.00 0.00 3.84
94 95 2.281070 ATCGCCGTCCATGCCATC 60.281 61.111 0.00 0.00 0.00 3.51
95 96 2.592574 CATCGCCGTCCATGCCAT 60.593 61.111 0.00 0.00 0.00 4.40
96 97 4.854924 CCATCGCCGTCCATGCCA 62.855 66.667 0.00 0.00 0.00 4.92
99 100 2.114670 AAAGCCATCGCCGTCCATG 61.115 57.895 0.00 0.00 34.57 3.66
100 101 2.114670 CAAAGCCATCGCCGTCCAT 61.115 57.895 0.00 0.00 34.57 3.41
101 102 2.745884 CAAAGCCATCGCCGTCCA 60.746 61.111 0.00 0.00 34.57 4.02
102 103 4.179579 GCAAAGCCATCGCCGTCC 62.180 66.667 0.00 0.00 34.57 4.79
103 104 4.520846 CGCAAAGCCATCGCCGTC 62.521 66.667 0.00 0.00 34.57 4.79
106 107 4.179579 GACCGCAAAGCCATCGCC 62.180 66.667 0.00 0.00 34.57 5.54
107 108 4.520846 CGACCGCAAAGCCATCGC 62.521 66.667 0.00 0.00 0.00 4.58
108 109 3.864686 CCGACCGCAAAGCCATCG 61.865 66.667 0.00 0.00 33.90 3.84
109 110 4.179579 GCCGACCGCAAAGCCATC 62.180 66.667 0.00 0.00 37.47 3.51
113 114 4.404654 CTTGGCCGACCGCAAAGC 62.405 66.667 0.00 0.00 41.65 3.51
114 115 3.737172 CCTTGGCCGACCGCAAAG 61.737 66.667 0.00 0.00 46.77 2.77
125 126 3.248446 TACACGTGGCTCCCTTGGC 62.248 63.158 21.57 0.00 0.00 4.52
126 127 1.375523 GTACACGTGGCTCCCTTGG 60.376 63.158 21.57 0.00 0.00 3.61
127 128 0.250124 TTGTACACGTGGCTCCCTTG 60.250 55.000 21.57 0.00 0.00 3.61
128 129 0.034896 CTTGTACACGTGGCTCCCTT 59.965 55.000 21.57 0.00 0.00 3.95
129 130 1.671742 CTTGTACACGTGGCTCCCT 59.328 57.895 21.57 0.00 0.00 4.20
130 131 1.375523 CCTTGTACACGTGGCTCCC 60.376 63.158 21.57 2.97 0.00 4.30
131 132 0.669625 GACCTTGTACACGTGGCTCC 60.670 60.000 21.57 4.82 0.00 4.70
132 133 1.007336 CGACCTTGTACACGTGGCTC 61.007 60.000 21.57 10.00 0.00 4.70
133 134 1.006571 CGACCTTGTACACGTGGCT 60.007 57.895 21.57 1.59 0.00 4.75
134 135 0.877213 AACGACCTTGTACACGTGGC 60.877 55.000 21.57 12.76 38.92 5.01
135 136 0.856641 CAACGACCTTGTACACGTGG 59.143 55.000 21.57 2.73 38.92 4.94
136 137 1.519758 GACAACGACCTTGTACACGTG 59.480 52.381 15.48 15.48 43.60 4.49
137 138 1.536709 GGACAACGACCTTGTACACGT 60.537 52.381 0.00 0.00 43.60 4.49
138 139 1.134226 GGACAACGACCTTGTACACG 58.866 55.000 0.00 0.00 43.60 4.49
139 140 2.228138 TGGACAACGACCTTGTACAC 57.772 50.000 0.00 0.00 45.22 2.90
141 142 2.132762 CAGTGGACAACGACCTTGTAC 58.867 52.381 0.00 0.00 43.60 2.90
142 143 1.539496 GCAGTGGACAACGACCTTGTA 60.539 52.381 0.00 0.00 43.60 2.41
143 144 0.814010 GCAGTGGACAACGACCTTGT 60.814 55.000 0.00 0.00 46.44 3.16
144 145 0.813610 TGCAGTGGACAACGACCTTG 60.814 55.000 0.00 0.00 35.77 3.61
145 146 0.107410 TTGCAGTGGACAACGACCTT 60.107 50.000 0.00 0.00 0.00 3.50
146 147 0.532862 CTTGCAGTGGACAACGACCT 60.533 55.000 0.00 0.00 0.00 3.85
147 148 0.814010 ACTTGCAGTGGACAACGACC 60.814 55.000 0.00 0.00 0.00 4.79
148 149 1.014352 AACTTGCAGTGGACAACGAC 58.986 50.000 0.00 0.00 0.00 4.34
149 150 2.479837 CTAACTTGCAGTGGACAACGA 58.520 47.619 0.00 0.00 0.00 3.85
150 151 1.069906 GCTAACTTGCAGTGGACAACG 60.070 52.381 0.00 0.00 0.00 4.10
151 152 1.266989 GGCTAACTTGCAGTGGACAAC 59.733 52.381 0.00 0.00 34.04 3.32
152 153 1.142870 AGGCTAACTTGCAGTGGACAA 59.857 47.619 0.00 0.00 34.04 3.18
153 154 0.764890 AGGCTAACTTGCAGTGGACA 59.235 50.000 0.00 0.00 34.04 4.02
154 155 1.443802 GAGGCTAACTTGCAGTGGAC 58.556 55.000 0.00 0.00 34.04 4.02
155 156 0.324943 GGAGGCTAACTTGCAGTGGA 59.675 55.000 0.00 0.00 34.04 4.02
156 157 0.036732 TGGAGGCTAACTTGCAGTGG 59.963 55.000 0.00 0.00 34.04 4.00
157 158 1.896220 TTGGAGGCTAACTTGCAGTG 58.104 50.000 0.00 0.00 34.04 3.66
158 159 2.656947 TTTGGAGGCTAACTTGCAGT 57.343 45.000 0.00 0.00 34.04 4.40
159 160 4.525912 AAATTTGGAGGCTAACTTGCAG 57.474 40.909 0.00 0.00 34.04 4.41
160 161 4.953940 AAAATTTGGAGGCTAACTTGCA 57.046 36.364 0.00 0.00 34.04 4.08
185 186 8.995906 CGATATTTTGACCGTTCAACTAAAATC 58.004 33.333 0.00 0.00 41.64 2.17
186 187 7.483691 GCGATATTTTGACCGTTCAACTAAAAT 59.516 33.333 0.00 0.00 41.64 1.82
187 188 6.797995 GCGATATTTTGACCGTTCAACTAAAA 59.202 34.615 0.00 0.00 41.64 1.52
188 189 6.308675 GCGATATTTTGACCGTTCAACTAAA 58.691 36.000 0.00 0.00 41.64 1.85
189 190 5.163834 GGCGATATTTTGACCGTTCAACTAA 60.164 40.000 0.00 0.00 41.64 2.24
190 191 4.330620 GGCGATATTTTGACCGTTCAACTA 59.669 41.667 0.00 0.00 41.64 2.24
191 192 3.126343 GGCGATATTTTGACCGTTCAACT 59.874 43.478 0.00 0.00 41.64 3.16
192 193 3.422655 GGCGATATTTTGACCGTTCAAC 58.577 45.455 0.00 0.00 41.64 3.18
193 194 2.420722 GGGCGATATTTTGACCGTTCAA 59.579 45.455 0.00 0.00 40.14 2.69
194 195 2.011222 GGGCGATATTTTGACCGTTCA 58.989 47.619 0.00 0.00 0.00 3.18
195 196 2.750301 GGGCGATATTTTGACCGTTC 57.250 50.000 0.00 0.00 0.00 3.95
199 200 1.533129 GCAACGGGCGATATTTTGACC 60.533 52.381 0.00 0.00 0.00 4.02
200 201 1.822581 GCAACGGGCGATATTTTGAC 58.177 50.000 0.00 0.00 0.00 3.18
211 212 1.923227 GAGGCTAACTTGCAACGGGC 61.923 60.000 0.00 0.00 45.13 6.13
212 213 1.305930 GGAGGCTAACTTGCAACGGG 61.306 60.000 0.00 0.00 34.04 5.28
213 214 0.605319 TGGAGGCTAACTTGCAACGG 60.605 55.000 0.00 0.00 34.04 4.44
214 215 1.234821 TTGGAGGCTAACTTGCAACG 58.765 50.000 0.00 0.00 34.04 4.10
215 216 3.942130 ATTTGGAGGCTAACTTGCAAC 57.058 42.857 0.00 0.00 34.04 4.17
216 217 4.953940 AAATTTGGAGGCTAACTTGCAA 57.046 36.364 0.00 0.00 34.04 4.08
217 218 4.953940 AAAATTTGGAGGCTAACTTGCA 57.046 36.364 0.00 0.00 34.04 4.08
236 237 8.140677 TCGACCGTTCAACTAAAATCTAAAAA 57.859 30.769 0.00 0.00 0.00 1.94
243 244 8.173130 GTGATATTTCGACCGTTCAACTAAAAT 58.827 33.333 0.00 0.00 0.00 1.82
247 248 5.104374 GGTGATATTTCGACCGTTCAACTA 58.896 41.667 0.00 0.00 0.00 2.24
284 285 9.818270 ATGGATTTCATCATAGTTTGGACATAT 57.182 29.630 0.00 0.00 0.00 1.78
342 343 8.995906 GTGTCTGTATACATTGCGAAATAAAAC 58.004 33.333 5.91 0.00 0.00 2.43
351 352 2.536365 ACCGTGTCTGTATACATTGCG 58.464 47.619 5.91 8.77 0.00 4.85
353 354 4.500127 TCCAACCGTGTCTGTATACATTG 58.500 43.478 5.91 6.12 0.00 2.82
359 360 1.906574 ACCATCCAACCGTGTCTGTAT 59.093 47.619 0.00 0.00 0.00 2.29
361 362 0.034896 GACCATCCAACCGTGTCTGT 59.965 55.000 0.00 0.00 0.00 3.41
364 365 1.740296 CCGACCATCCAACCGTGTC 60.740 63.158 0.00 0.00 0.00 3.67
366 367 3.124921 GCCGACCATCCAACCGTG 61.125 66.667 0.00 0.00 0.00 4.94
368 369 2.511600 GAGCCGACCATCCAACCG 60.512 66.667 0.00 0.00 0.00 4.44
386 387 3.631686 TCAGTTGGTGAAAAGTGATGTGG 59.368 43.478 0.00 0.00 35.15 4.17
388 389 6.469782 AAATCAGTTGGTGAAAAGTGATGT 57.530 33.333 7.76 0.84 45.33 3.06
400 401 2.106857 TGGACCGGTAAAATCAGTTGGT 59.893 45.455 7.34 0.00 0.00 3.67
402 403 3.142951 TGTGGACCGGTAAAATCAGTTG 58.857 45.455 7.34 0.00 0.00 3.16
410 412 3.495434 ATTTGTCTGTGGACCGGTAAA 57.505 42.857 7.34 1.45 41.47 2.01
412 414 2.094597 CGTATTTGTCTGTGGACCGGTA 60.095 50.000 7.34 0.00 41.47 4.02
421 423 0.108329 CGGGGAGCGTATTTGTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
428 430 1.488390 TCCTAAACGGGGAGCGTATT 58.512 50.000 0.00 0.00 0.00 1.89
434 436 2.277084 CGTTGATTCCTAAACGGGGAG 58.723 52.381 0.21 0.00 44.08 4.30
440 442 5.673818 GCATCTCCAACGTTGATTCCTAAAC 60.674 44.000 29.35 6.59 0.00 2.01
441 443 4.394920 GCATCTCCAACGTTGATTCCTAAA 59.605 41.667 29.35 6.24 0.00 1.85
443 445 3.531538 GCATCTCCAACGTTGATTCCTA 58.468 45.455 29.35 8.76 0.00 2.94
447 450 2.198827 TGGCATCTCCAACGTTGATT 57.801 45.000 29.35 8.02 43.21 2.57
594 603 3.248171 GATCCAGCACGACGACGC 61.248 66.667 7.30 3.61 43.96 5.19
596 605 1.868251 GTCGATCCAGCACGACGAC 60.868 63.158 0.00 0.00 46.39 4.34
597 606 2.483745 GTCGATCCAGCACGACGA 59.516 61.111 0.00 0.00 46.39 4.20
684 698 1.202245 GCAGACGCCACAAGAAACAAA 60.202 47.619 0.00 0.00 0.00 2.83
806 839 1.977544 AAGACGACGGGAGGAGGTG 60.978 63.158 0.00 0.00 0.00 4.00
911 944 1.291877 GGCATATAACTGCGGCGAGG 61.292 60.000 12.98 4.25 43.23 4.63
913 946 0.878523 GTGGCATATAACTGCGGCGA 60.879 55.000 12.98 0.00 43.23 5.54
914 947 0.880278 AGTGGCATATAACTGCGGCG 60.880 55.000 0.51 0.51 43.23 6.46
915 948 0.868406 GAGTGGCATATAACTGCGGC 59.132 55.000 0.00 0.00 43.23 6.53
917 950 2.138320 CTGGAGTGGCATATAACTGCG 58.862 52.381 0.00 0.00 43.23 5.18
956 1005 3.036026 TTGCGAGATCGAGCAAGAC 57.964 52.632 21.31 0.00 46.83 3.01
1430 1573 3.427161 AAGAAACAGTCAAACAGCAGC 57.573 42.857 0.00 0.00 0.00 5.25
1492 1652 2.869233 AAACAAGCATCGCTGTGTTT 57.131 40.000 16.45 16.45 40.81 2.83
1515 1675 6.043243 TCCCAGCCTGTATTTCTAATAAGGAG 59.957 42.308 0.00 0.00 0.00 3.69
1516 1676 5.908831 TCCCAGCCTGTATTTCTAATAAGGA 59.091 40.000 0.00 0.00 0.00 3.36
1517 1677 6.187727 TCCCAGCCTGTATTTCTAATAAGG 57.812 41.667 0.00 0.00 0.00 2.69
1523 1683 3.886123 GCTTTCCCAGCCTGTATTTCTA 58.114 45.455 0.00 0.00 43.65 2.10
1546 1706 3.152341 CAGGTCTGTGGATTTCTTGCTT 58.848 45.455 0.00 0.00 0.00 3.91
1548 1708 1.815003 CCAGGTCTGTGGATTTCTTGC 59.185 52.381 0.00 0.00 40.44 4.01
1646 1809 8.678199 CAAGTTTTCAGTTTAGGAGAGACTTTT 58.322 33.333 0.00 0.00 0.00 2.27
1649 1812 5.760743 GCAAGTTTTCAGTTTAGGAGAGACT 59.239 40.000 0.00 0.00 0.00 3.24
1652 1815 7.821846 AGATAGCAAGTTTTCAGTTTAGGAGAG 59.178 37.037 0.00 0.00 0.00 3.20
1656 1822 8.352942 ACAAAGATAGCAAGTTTTCAGTTTAGG 58.647 33.333 0.00 0.00 0.00 2.69
1665 1831 9.252962 CTGATGAAAACAAAGATAGCAAGTTTT 57.747 29.630 7.57 7.57 42.91 2.43
1668 1834 7.750229 TCTGATGAAAACAAAGATAGCAAGT 57.250 32.000 0.00 0.00 0.00 3.16
1686 1852 3.063997 GTCCTGCGTGGTAAAATCTGATG 59.936 47.826 0.00 0.00 37.07 3.07
1688 1854 2.037902 TGTCCTGCGTGGTAAAATCTGA 59.962 45.455 0.00 0.00 37.07 3.27
1693 1859 2.550606 GTTGATGTCCTGCGTGGTAAAA 59.449 45.455 0.00 0.00 37.07 1.52
1700 1866 0.396435 TGGAAGTTGATGTCCTGCGT 59.604 50.000 0.00 0.00 34.77 5.24
1705 1871 3.081804 ACCGATTTGGAAGTTGATGTCC 58.918 45.455 0.00 0.00 42.00 4.02
1713 1879 2.332654 GGCGCACCGATTTGGAAGT 61.333 57.895 10.83 0.00 42.00 3.01
1749 1915 2.086251 TTACCTTCCGGTGTCGCGTT 62.086 55.000 5.77 0.00 45.18 4.84
1771 1937 1.470051 GAGAGGAGAAAGGTCGAGCT 58.530 55.000 12.24 12.24 0.00 4.09
1775 1941 1.107945 GAGGGAGAGGAGAAAGGTCG 58.892 60.000 0.00 0.00 0.00 4.79
1779 1945 2.541233 TCCAGAGGGAGAGGAGAAAG 57.459 55.000 0.00 0.00 38.64 2.62
1799 1965 3.024547 AGGTACTTTGCTCGCAGATAGA 58.975 45.455 0.00 0.00 27.25 1.98
1841 2008 9.528018 CGCCATTGACAATATTTTTAACCTATT 57.472 29.630 0.00 0.00 0.00 1.73
1909 2083 9.529325 CATCTTCGAGGTAAACTCATAACATAA 57.471 33.333 0.00 0.00 46.98 1.90
1910 2084 8.692710 ACATCTTCGAGGTAAACTCATAACATA 58.307 33.333 0.00 0.00 46.98 2.29
1911 2085 7.492669 CACATCTTCGAGGTAAACTCATAACAT 59.507 37.037 0.00 0.00 46.98 2.71
1912 2086 6.811665 CACATCTTCGAGGTAAACTCATAACA 59.188 38.462 0.00 0.00 46.98 2.41
1913 2087 6.237861 GCACATCTTCGAGGTAAACTCATAAC 60.238 42.308 0.00 0.00 46.98 1.89
1942 2116 7.224557 AGTTGATTAAACAAAATGCAGTGGAAC 59.775 33.333 0.00 0.00 41.61 3.62
1944 2118 6.815089 AGTTGATTAAACAAAATGCAGTGGA 58.185 32.000 0.00 0.00 41.61 4.02
1976 2150 4.025061 CAGCTCTACACATGATGCTTTAGC 60.025 45.833 0.00 0.00 42.50 3.09
1977 2151 5.233902 GTCAGCTCTACACATGATGCTTTAG 59.766 44.000 0.00 0.00 0.00 1.85
1978 2152 5.111989 GTCAGCTCTACACATGATGCTTTA 58.888 41.667 0.00 0.00 0.00 1.85
1979 2153 3.937706 GTCAGCTCTACACATGATGCTTT 59.062 43.478 0.00 0.00 0.00 3.51
1980 2154 3.529533 GTCAGCTCTACACATGATGCTT 58.470 45.455 0.00 0.00 0.00 3.91
1981 2155 2.158986 GGTCAGCTCTACACATGATGCT 60.159 50.000 0.00 0.00 0.00 3.79
1999 2175 2.836262 CCTGATGATTGCTGAGAGGTC 58.164 52.381 0.00 0.00 0.00 3.85
2002 2178 2.327200 TGCCTGATGATTGCTGAGAG 57.673 50.000 0.00 0.00 0.00 3.20
2009 2185 7.012989 TGTTGATTTCTAGATGCCTGATGATTG 59.987 37.037 0.00 0.00 0.00 2.67
2010 2186 7.058525 TGTTGATTTCTAGATGCCTGATGATT 58.941 34.615 0.00 0.00 0.00 2.57
2031 2207 6.954852 CGTGCAGGCAAAAATAATTATTGTTG 59.045 34.615 26.81 26.81 41.60 3.33
2032 2208 6.091986 CCGTGCAGGCAAAAATAATTATTGTT 59.908 34.615 11.42 9.45 0.00 2.83
2034 2210 5.809562 TCCGTGCAGGCAAAAATAATTATTG 59.190 36.000 11.42 2.48 40.77 1.90
2035 2211 5.810074 GTCCGTGCAGGCAAAAATAATTATT 59.190 36.000 4.81 4.81 40.77 1.40
2038 2214 3.258123 AGTCCGTGCAGGCAAAAATAATT 59.742 39.130 0.00 0.00 40.77 1.40
2042 2218 0.314935 CAGTCCGTGCAGGCAAAAAT 59.685 50.000 0.00 0.00 40.77 1.82
2055 2231 4.649088 TCATCCATACACTTACAGTCCG 57.351 45.455 0.00 0.00 0.00 4.79
2063 2248 6.114187 TGAGTCTGTTTCATCCATACACTT 57.886 37.500 0.00 0.00 0.00 3.16
2065 2250 6.348540 GGTTTGAGTCTGTTTCATCCATACAC 60.349 42.308 0.00 0.00 0.00 2.90
2066 2251 5.705441 GGTTTGAGTCTGTTTCATCCATACA 59.295 40.000 0.00 0.00 0.00 2.29
2075 2260 5.048713 CCAATACCTGGTTTGAGTCTGTTTC 60.049 44.000 3.84 0.00 40.78 2.78
2076 2261 4.827284 CCAATACCTGGTTTGAGTCTGTTT 59.173 41.667 3.84 0.00 40.78 2.83
2093 2278 5.148651 ACTTGACTGTCTGGTACCAATAC 57.851 43.478 17.11 16.86 0.00 1.89
2094 2279 6.666113 TCATACTTGACTGTCTGGTACCAATA 59.334 38.462 17.11 4.12 0.00 1.90
2118 2307 7.333528 ACTAATCAGATCTCACTTCTCAGTC 57.666 40.000 0.00 0.00 0.00 3.51
2124 2313 6.369890 TGCAACAACTAATCAGATCTCACTTC 59.630 38.462 0.00 0.00 0.00 3.01
2160 2479 9.609346 TTAGTTCTAAGAAAAGCTAACACTTGT 57.391 29.630 0.00 0.00 0.00 3.16
2199 2519 7.946776 ACTTTGCATATATATCTTTGGAAGGCT 59.053 33.333 0.00 0.00 0.00 4.58
2200 2520 8.115490 ACTTTGCATATATATCTTTGGAAGGC 57.885 34.615 0.00 0.00 0.00 4.35
2227 2547 7.692460 ATTCCATGTATGTGCACATATAAGG 57.308 36.000 34.28 34.28 40.53 2.69
2234 2554 5.585844 CAGTAGAATTCCATGTATGTGCACA 59.414 40.000 24.08 24.08 0.00 4.57
2235 2555 5.817296 TCAGTAGAATTCCATGTATGTGCAC 59.183 40.000 10.75 10.75 0.00 4.57
2236 2556 5.988287 TCAGTAGAATTCCATGTATGTGCA 58.012 37.500 0.65 0.00 0.00 4.57
2237 2557 7.502120 AATCAGTAGAATTCCATGTATGTGC 57.498 36.000 0.65 0.00 0.00 4.57
2238 2558 9.770097 AGTAATCAGTAGAATTCCATGTATGTG 57.230 33.333 0.65 0.00 0.00 3.21
2243 2563 7.926555 CGGTAAGTAATCAGTAGAATTCCATGT 59.073 37.037 0.65 0.00 0.00 3.21
2244 2564 7.926555 ACGGTAAGTAATCAGTAGAATTCCATG 59.073 37.037 0.65 0.00 0.00 3.66
2246 2566 7.123098 TGACGGTAAGTAATCAGTAGAATTCCA 59.877 37.037 0.65 0.00 0.00 3.53
2247 2567 7.486647 TGACGGTAAGTAATCAGTAGAATTCC 58.513 38.462 0.65 0.00 0.00 3.01
2248 2568 8.969267 CATGACGGTAAGTAATCAGTAGAATTC 58.031 37.037 0.00 0.00 0.00 2.17
2249 2569 7.438459 GCATGACGGTAAGTAATCAGTAGAATT 59.562 37.037 0.00 0.00 0.00 2.17
2251 2571 6.270815 GCATGACGGTAAGTAATCAGTAGAA 58.729 40.000 0.00 0.00 0.00 2.10
2252 2572 5.505159 CGCATGACGGTAAGTAATCAGTAGA 60.505 44.000 0.00 0.00 38.44 2.59
2282 2613 5.007626 TCTCAACCGAAGAAAAAGACACATG 59.992 40.000 0.00 0.00 0.00 3.21
2364 2695 2.526873 AGGGTGTCCTCAAGCGGT 60.527 61.111 0.00 0.00 39.80 5.68
2376 2707 4.202441 CCTGAATTTGATACCTGAGGGTG 58.798 47.826 2.38 0.00 46.75 4.61
2482 2813 8.122330 TGATTGCAGATATAAGCAGTTTTAACG 58.878 33.333 2.30 0.00 42.39 3.18
2490 2821 4.083431 GCACCTGATTGCAGATATAAGCAG 60.083 45.833 0.00 0.00 45.17 4.24
2502 2847 1.135460 GCTTCTTCTGCACCTGATTGC 60.135 52.381 0.00 0.00 43.31 3.56
2504 2853 2.875094 AGCTTCTTCTGCACCTGATT 57.125 45.000 0.00 0.00 0.00 2.57
2554 2903 9.877178 TGAGCTTTCTCTAGTATTTCCTTTAAG 57.123 33.333 0.00 0.00 40.03 1.85
2608 2957 2.613223 GGTGTTCTCTAGGCCAACAGAC 60.613 54.545 5.01 0.00 30.72 3.51
2613 2962 2.024176 TCTGGTGTTCTCTAGGCCAA 57.976 50.000 5.01 0.00 0.00 4.52
2623 2972 2.072298 GTGAGCTGTGATCTGGTGTTC 58.928 52.381 0.00 0.00 0.00 3.18
2626 2975 0.738762 CCGTGAGCTGTGATCTGGTG 60.739 60.000 0.00 0.00 0.00 4.17
2677 3026 5.003160 TCTTCATACACCTGTGTTCCATTG 58.997 41.667 8.41 0.58 41.83 2.82
2804 3153 1.200020 CTCAGTTTTCGGGGTGCATTC 59.800 52.381 0.00 0.00 0.00 2.67
2896 3245 7.149569 TCTGCTGGTTAATCTTCAGATTTTG 57.850 36.000 7.36 0.00 41.64 2.44
2897 3246 6.376581 CCTCTGCTGGTTAATCTTCAGATTTT 59.623 38.462 7.36 0.00 41.64 1.82
2935 3284 4.660789 AAAACTGTCAGCTTGCTGAAAT 57.339 36.364 24.41 11.69 34.88 2.17
2944 3293 2.736670 ACTCCCAAAAACTGTCAGCT 57.263 45.000 0.00 0.00 0.00 4.24
3033 3382 6.308766 CAGCAAATTTAACATTACCACAGAGC 59.691 38.462 0.00 0.00 0.00 4.09
3127 3477 8.735692 TTGATATCTGATTGTTACATGCTTCA 57.264 30.769 3.98 0.00 0.00 3.02
3128 3478 9.049523 TCTTGATATCTGATTGTTACATGCTTC 57.950 33.333 3.98 0.00 0.00 3.86
3176 3526 2.224549 TGCAACGTGTGGTACATAAAGC 59.775 45.455 0.00 0.00 44.52 3.51
3189 3539 3.919197 TGCACATCAAATTATGCAACGTG 59.081 39.130 0.00 0.00 44.72 4.49
3190 3540 4.171663 TGCACATCAAATTATGCAACGT 57.828 36.364 0.00 0.00 44.72 3.99
3194 3544 4.675933 GCTCTGTGCACATCAAATTATGCA 60.676 41.667 22.00 0.00 45.45 3.96
3195 3545 3.795101 GCTCTGTGCACATCAAATTATGC 59.205 43.478 22.00 10.06 42.31 3.14
3196 3546 4.142337 TGGCTCTGTGCACATCAAATTATG 60.142 41.667 22.00 5.23 45.15 1.90
3197 3547 4.018490 TGGCTCTGTGCACATCAAATTAT 58.982 39.130 22.00 0.00 45.15 1.28
3198 3548 3.191162 GTGGCTCTGTGCACATCAAATTA 59.809 43.478 22.00 1.11 45.15 1.40
3199 3549 2.029649 GTGGCTCTGTGCACATCAAATT 60.030 45.455 22.00 0.00 45.15 1.82
3200 3550 1.542915 GTGGCTCTGTGCACATCAAAT 59.457 47.619 22.00 0.00 45.15 2.32
3201 3551 0.953727 GTGGCTCTGTGCACATCAAA 59.046 50.000 22.00 5.62 45.15 2.69
3202 3552 0.179023 TGTGGCTCTGTGCACATCAA 60.179 50.000 22.00 8.24 45.15 2.57
3203 3553 0.037160 ATGTGGCTCTGTGCACATCA 59.963 50.000 22.00 13.39 45.15 3.07
3204 3554 2.028420 TATGTGGCTCTGTGCACATC 57.972 50.000 22.00 12.31 45.15 3.06
3234 3584 5.016831 ACCCTACCAGATAAAAGCAAAAGG 58.983 41.667 0.00 0.00 0.00 3.11
3235 3585 7.628580 GCTTACCCTACCAGATAAAAGCAAAAG 60.629 40.741 0.00 0.00 38.33 2.27
3256 3607 5.333111 CGCTAATCGGGTTTATTCTGCTTAC 60.333 44.000 0.00 0.00 33.78 2.34
3286 3637 8.608317 GCTGAGTATAGTTCTGAATTCTTTTCC 58.392 37.037 7.05 0.00 0.00 3.13
3290 3641 8.263640 ACATGCTGAGTATAGTTCTGAATTCTT 58.736 33.333 7.05 0.00 0.00 2.52
3292 3643 7.170658 GGACATGCTGAGTATAGTTCTGAATTC 59.829 40.741 0.00 0.00 0.00 2.17
3293 3644 6.989169 GGACATGCTGAGTATAGTTCTGAATT 59.011 38.462 0.00 0.00 0.00 2.17
3294 3645 6.098838 TGGACATGCTGAGTATAGTTCTGAAT 59.901 38.462 0.00 0.00 0.00 2.57
3307 3658 4.380867 GGGTTTATTGTTGGACATGCTGAG 60.381 45.833 0.00 0.00 0.00 3.35
3309 3660 3.511146 AGGGTTTATTGTTGGACATGCTG 59.489 43.478 0.00 0.00 0.00 4.41
3313 3664 6.739331 TTTCAAGGGTTTATTGTTGGACAT 57.261 33.333 0.00 0.00 0.00 3.06
3364 3715 6.551736 TGCATTTAGGATTTAGCGAAGTTTC 58.448 36.000 0.00 0.00 0.00 2.78
3470 3836 6.730960 TTATAATATAAAGCGGGGCGAAAG 57.269 37.500 0.00 0.00 0.00 2.62
3471 3837 6.348704 GCTTTATAATATAAAGCGGGGCGAAA 60.349 38.462 30.20 0.57 46.31 3.46
3472 3838 5.122711 GCTTTATAATATAAAGCGGGGCGAA 59.877 40.000 30.20 0.00 46.31 4.70
3473 3839 4.632688 GCTTTATAATATAAAGCGGGGCGA 59.367 41.667 30.20 0.05 46.31 5.54
3474 3840 4.905269 GCTTTATAATATAAAGCGGGGCG 58.095 43.478 30.20 10.34 46.31 6.13
3483 3849 8.417884 GCTTGGGTGGTTTGCTTTATAATATAA 58.582 33.333 0.00 0.00 0.00 0.98
3484 3850 7.014808 GGCTTGGGTGGTTTGCTTTATAATATA 59.985 37.037 0.00 0.00 0.00 0.86
3485 3851 6.183360 GGCTTGGGTGGTTTGCTTTATAATAT 60.183 38.462 0.00 0.00 0.00 1.28
3486 3852 5.128008 GGCTTGGGTGGTTTGCTTTATAATA 59.872 40.000 0.00 0.00 0.00 0.98
3487 3853 4.081142 GGCTTGGGTGGTTTGCTTTATAAT 60.081 41.667 0.00 0.00 0.00 1.28
3488 3854 3.259625 GGCTTGGGTGGTTTGCTTTATAA 59.740 43.478 0.00 0.00 0.00 0.98
3489 3855 2.829120 GGCTTGGGTGGTTTGCTTTATA 59.171 45.455 0.00 0.00 0.00 0.98
3490 3856 1.623311 GGCTTGGGTGGTTTGCTTTAT 59.377 47.619 0.00 0.00 0.00 1.40
3491 3857 1.044611 GGCTTGGGTGGTTTGCTTTA 58.955 50.000 0.00 0.00 0.00 1.85
3492 3858 0.980231 TGGCTTGGGTGGTTTGCTTT 60.980 50.000 0.00 0.00 0.00 3.51
3493 3859 0.980231 TTGGCTTGGGTGGTTTGCTT 60.980 50.000 0.00 0.00 0.00 3.91
3494 3860 0.980231 TTTGGCTTGGGTGGTTTGCT 60.980 50.000 0.00 0.00 0.00 3.91
3495 3861 0.813610 GTTTGGCTTGGGTGGTTTGC 60.814 55.000 0.00 0.00 0.00 3.68
3496 3862 0.539051 TGTTTGGCTTGGGTGGTTTG 59.461 50.000 0.00 0.00 0.00 2.93
3497 3863 1.416030 GATGTTTGGCTTGGGTGGTTT 59.584 47.619 0.00 0.00 0.00 3.27
3498 3864 1.047801 GATGTTTGGCTTGGGTGGTT 58.952 50.000 0.00 0.00 0.00 3.67
3499 3865 0.831711 GGATGTTTGGCTTGGGTGGT 60.832 55.000 0.00 0.00 0.00 4.16
3500 3866 0.831288 TGGATGTTTGGCTTGGGTGG 60.831 55.000 0.00 0.00 0.00 4.61
3501 3867 1.047002 TTGGATGTTTGGCTTGGGTG 58.953 50.000 0.00 0.00 0.00 4.61
3502 3868 1.047801 GTTGGATGTTTGGCTTGGGT 58.952 50.000 0.00 0.00 0.00 4.51
3503 3869 1.047002 TGTTGGATGTTTGGCTTGGG 58.953 50.000 0.00 0.00 0.00 4.12
3504 3870 2.548493 CCTTGTTGGATGTTTGGCTTGG 60.548 50.000 0.00 0.00 38.35 3.61
3505 3871 2.102925 ACCTTGTTGGATGTTTGGCTTG 59.897 45.455 0.00 0.00 39.71 4.01
3506 3872 2.397597 ACCTTGTTGGATGTTTGGCTT 58.602 42.857 0.00 0.00 39.71 4.35
3507 3873 2.086610 ACCTTGTTGGATGTTTGGCT 57.913 45.000 0.00 0.00 39.71 4.75
3508 3874 2.102252 TGAACCTTGTTGGATGTTTGGC 59.898 45.455 0.00 0.00 39.71 4.52
3509 3875 4.399004 TTGAACCTTGTTGGATGTTTGG 57.601 40.909 0.00 0.00 39.71 3.28
3510 3876 5.063312 GTGTTTGAACCTTGTTGGATGTTTG 59.937 40.000 0.00 0.00 39.71 2.93
3511 3877 5.175127 GTGTTTGAACCTTGTTGGATGTTT 58.825 37.500 0.00 0.00 39.71 2.83
3512 3878 4.221703 TGTGTTTGAACCTTGTTGGATGTT 59.778 37.500 0.00 0.00 39.71 2.71
3513 3879 3.766591 TGTGTTTGAACCTTGTTGGATGT 59.233 39.130 0.00 0.00 39.71 3.06
3514 3880 4.111916 GTGTGTTTGAACCTTGTTGGATG 58.888 43.478 0.00 0.00 39.71 3.51
3515 3881 3.766591 TGTGTGTTTGAACCTTGTTGGAT 59.233 39.130 0.00 0.00 39.71 3.41
3516 3882 3.057174 GTGTGTGTTTGAACCTTGTTGGA 60.057 43.478 0.00 0.00 39.71 3.53
3517 3883 3.249917 GTGTGTGTTTGAACCTTGTTGG 58.750 45.455 0.00 0.00 42.93 3.77
3518 3884 3.672867 GTGTGTGTGTTTGAACCTTGTTG 59.327 43.478 0.00 0.00 0.00 3.33
3519 3885 3.319405 TGTGTGTGTGTTTGAACCTTGTT 59.681 39.130 0.00 0.00 0.00 2.83
3520 3886 2.887783 TGTGTGTGTGTTTGAACCTTGT 59.112 40.909 0.00 0.00 0.00 3.16
3521 3887 3.241701 GTGTGTGTGTGTTTGAACCTTG 58.758 45.455 0.00 0.00 0.00 3.61
3522 3888 2.887783 TGTGTGTGTGTGTTTGAACCTT 59.112 40.909 0.00 0.00 0.00 3.50
3523 3889 2.227865 GTGTGTGTGTGTGTTTGAACCT 59.772 45.455 0.00 0.00 0.00 3.50
3524 3890 2.030717 TGTGTGTGTGTGTGTTTGAACC 60.031 45.455 0.00 0.00 0.00 3.62
3525 3891 3.275400 TGTGTGTGTGTGTGTTTGAAC 57.725 42.857 0.00 0.00 0.00 3.18
3526 3892 3.316588 ACTTGTGTGTGTGTGTGTTTGAA 59.683 39.130 0.00 0.00 0.00 2.69
3527 3893 2.881513 ACTTGTGTGTGTGTGTGTTTGA 59.118 40.909 0.00 0.00 0.00 2.69
3528 3894 3.058293 AGACTTGTGTGTGTGTGTGTTTG 60.058 43.478 0.00 0.00 0.00 2.93
3529 3895 3.146066 AGACTTGTGTGTGTGTGTGTTT 58.854 40.909 0.00 0.00 0.00 2.83
3530 3896 2.742053 GAGACTTGTGTGTGTGTGTGTT 59.258 45.455 0.00 0.00 0.00 3.32
3531 3897 2.289382 TGAGACTTGTGTGTGTGTGTGT 60.289 45.455 0.00 0.00 0.00 3.72
3532 3898 2.094258 GTGAGACTTGTGTGTGTGTGTG 59.906 50.000 0.00 0.00 0.00 3.82
3533 3899 2.028112 AGTGAGACTTGTGTGTGTGTGT 60.028 45.455 0.00 0.00 0.00 3.72
3534 3900 2.604914 GAGTGAGACTTGTGTGTGTGTG 59.395 50.000 0.00 0.00 0.00 3.82
3535 3901 2.233676 TGAGTGAGACTTGTGTGTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
3536 3902 2.604914 GTGAGTGAGACTTGTGTGTGTG 59.395 50.000 0.00 0.00 0.00 3.82
3537 3903 2.233676 TGTGAGTGAGACTTGTGTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
3538 3904 2.604914 GTGTGAGTGAGACTTGTGTGTG 59.395 50.000 0.00 0.00 0.00 3.82
3539 3905 2.233676 TGTGTGAGTGAGACTTGTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
3540 3906 2.604914 GTGTGTGAGTGAGACTTGTGTG 59.395 50.000 0.00 0.00 0.00 3.82
3541 3907 2.233676 TGTGTGTGAGTGAGACTTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
3542 3908 2.892374 TGTGTGTGAGTGAGACTTGTG 58.108 47.619 0.00 0.00 0.00 3.33
3543 3909 3.610040 TTGTGTGTGAGTGAGACTTGT 57.390 42.857 0.00 0.00 0.00 3.16
3544 3910 3.873361 ACATTGTGTGTGAGTGAGACTTG 59.127 43.478 0.00 0.00 40.28 3.16
3545 3911 4.142609 ACATTGTGTGTGAGTGAGACTT 57.857 40.909 0.00 0.00 40.28 3.01
3546 3912 3.827008 ACATTGTGTGTGAGTGAGACT 57.173 42.857 0.00 0.00 40.28 3.24
3547 3913 3.430218 GCTACATTGTGTGTGAGTGAGAC 59.570 47.826 0.00 0.00 42.24 3.36
3548 3914 3.653344 GCTACATTGTGTGTGAGTGAGA 58.347 45.455 0.00 0.00 42.24 3.27
3549 3915 2.409715 CGCTACATTGTGTGTGAGTGAG 59.590 50.000 0.00 0.00 42.24 3.51
3550 3916 2.035321 TCGCTACATTGTGTGTGAGTGA 59.965 45.455 0.00 0.00 42.24 3.41
3551 3917 2.403259 TCGCTACATTGTGTGTGAGTG 58.597 47.619 0.00 0.00 42.24 3.51
3552 3918 2.812358 TCGCTACATTGTGTGTGAGT 57.188 45.000 0.00 0.00 42.24 3.41
3553 3919 4.268644 CCTATTCGCTACATTGTGTGTGAG 59.731 45.833 0.00 0.00 42.24 3.51
3554 3920 4.180817 CCTATTCGCTACATTGTGTGTGA 58.819 43.478 0.00 2.02 42.24 3.58
3555 3921 3.309682 CCCTATTCGCTACATTGTGTGTG 59.690 47.826 0.00 0.00 42.24 3.82
3556 3922 3.055385 ACCCTATTCGCTACATTGTGTGT 60.055 43.478 0.00 0.00 44.95 3.72
3557 3923 3.531538 ACCCTATTCGCTACATTGTGTG 58.468 45.455 0.00 0.00 0.00 3.82
3558 3924 3.906720 ACCCTATTCGCTACATTGTGT 57.093 42.857 0.00 0.00 0.00 3.72
3559 3925 6.658831 CATTAACCCTATTCGCTACATTGTG 58.341 40.000 0.00 0.00 0.00 3.33
3560 3926 5.238650 GCATTAACCCTATTCGCTACATTGT 59.761 40.000 0.00 0.00 0.00 2.71
3561 3927 5.470098 AGCATTAACCCTATTCGCTACATTG 59.530 40.000 0.00 0.00 0.00 2.82
3562 3928 5.470098 CAGCATTAACCCTATTCGCTACATT 59.530 40.000 0.00 0.00 0.00 2.71
3563 3929 4.997395 CAGCATTAACCCTATTCGCTACAT 59.003 41.667 0.00 0.00 0.00 2.29
3564 3930 4.100344 TCAGCATTAACCCTATTCGCTACA 59.900 41.667 0.00 0.00 0.00 2.74
3565 3931 4.628074 TCAGCATTAACCCTATTCGCTAC 58.372 43.478 0.00 0.00 0.00 3.58
3566 3932 4.262463 CCTCAGCATTAACCCTATTCGCTA 60.262 45.833 0.00 0.00 0.00 4.26
3567 3933 3.495100 CCTCAGCATTAACCCTATTCGCT 60.495 47.826 0.00 0.00 0.00 4.93
3568 3934 2.808543 CCTCAGCATTAACCCTATTCGC 59.191 50.000 0.00 0.00 0.00 4.70
3569 3935 3.403038 CCCTCAGCATTAACCCTATTCG 58.597 50.000 0.00 0.00 0.00 3.34
3570 3936 3.149981 GCCCTCAGCATTAACCCTATTC 58.850 50.000 0.00 0.00 42.97 1.75
3571 3937 3.229697 GCCCTCAGCATTAACCCTATT 57.770 47.619 0.00 0.00 42.97 1.73
3572 3938 2.959465 GCCCTCAGCATTAACCCTAT 57.041 50.000 0.00 0.00 42.97 2.57
3584 3950 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
3585 3951 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
3586 3952 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
3587 3953 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
3596 3962 1.691196 TGTTTCCAGGGCTTGTTGAG 58.309 50.000 0.00 0.00 0.00 3.02
3597 3963 2.151502 TTGTTTCCAGGGCTTGTTGA 57.848 45.000 0.00 0.00 0.00 3.18
3598 3964 2.935849 GTTTTGTTTCCAGGGCTTGTTG 59.064 45.455 0.00 0.00 0.00 3.33
3599 3965 2.569404 TGTTTTGTTTCCAGGGCTTGTT 59.431 40.909 0.00 0.00 0.00 2.83
3600 3966 2.183679 TGTTTTGTTTCCAGGGCTTGT 58.816 42.857 0.00 0.00 0.00 3.16
3601 3967 2.935849 GTTGTTTTGTTTCCAGGGCTTG 59.064 45.455 0.00 0.00 0.00 4.01
3602 3968 2.569404 TGTTGTTTTGTTTCCAGGGCTT 59.431 40.909 0.00 0.00 0.00 4.35
3603 3969 2.093711 GTGTTGTTTTGTTTCCAGGGCT 60.094 45.455 0.00 0.00 0.00 5.19
3604 3970 2.276201 GTGTTGTTTTGTTTCCAGGGC 58.724 47.619 0.00 0.00 0.00 5.19
3605 3971 3.056179 AGTGTGTTGTTTTGTTTCCAGGG 60.056 43.478 0.00 0.00 0.00 4.45
3606 3972 4.173256 GAGTGTGTTGTTTTGTTTCCAGG 58.827 43.478 0.00 0.00 0.00 4.45
3607 3973 4.621034 GTGAGTGTGTTGTTTTGTTTCCAG 59.379 41.667 0.00 0.00 0.00 3.86
3608 3974 4.038042 TGTGAGTGTGTTGTTTTGTTTCCA 59.962 37.500 0.00 0.00 0.00 3.53
3609 3975 4.384547 GTGTGAGTGTGTTGTTTTGTTTCC 59.615 41.667 0.00 0.00 0.00 3.13
3610 3976 4.979197 TGTGTGAGTGTGTTGTTTTGTTTC 59.021 37.500 0.00 0.00 0.00 2.78
3611 3977 4.742659 GTGTGTGAGTGTGTTGTTTTGTTT 59.257 37.500 0.00 0.00 0.00 2.83
3612 3978 4.202060 TGTGTGTGAGTGTGTTGTTTTGTT 60.202 37.500 0.00 0.00 0.00 2.83
3613 3979 3.316588 TGTGTGTGAGTGTGTTGTTTTGT 59.683 39.130 0.00 0.00 0.00 2.83
3614 3980 3.894920 TGTGTGTGAGTGTGTTGTTTTG 58.105 40.909 0.00 0.00 0.00 2.44
3615 3981 4.217334 TGATGTGTGTGAGTGTGTTGTTTT 59.783 37.500 0.00 0.00 0.00 2.43
3616 3982 3.755905 TGATGTGTGTGAGTGTGTTGTTT 59.244 39.130 0.00 0.00 0.00 2.83
3617 3983 3.342719 TGATGTGTGTGAGTGTGTTGTT 58.657 40.909 0.00 0.00 0.00 2.83
3618 3984 2.984562 TGATGTGTGTGAGTGTGTTGT 58.015 42.857 0.00 0.00 0.00 3.32
3619 3985 3.487376 GGTTGATGTGTGTGAGTGTGTTG 60.487 47.826 0.00 0.00 0.00 3.33
3620 3986 2.682856 GGTTGATGTGTGTGAGTGTGTT 59.317 45.455 0.00 0.00 0.00 3.32
3621 3987 2.288666 GGTTGATGTGTGTGAGTGTGT 58.711 47.619 0.00 0.00 0.00 3.72
3622 3988 1.603802 GGGTTGATGTGTGTGAGTGTG 59.396 52.381 0.00 0.00 0.00 3.82
3623 3989 1.211703 TGGGTTGATGTGTGTGAGTGT 59.788 47.619 0.00 0.00 0.00 3.55
3624 3990 1.965935 TGGGTTGATGTGTGTGAGTG 58.034 50.000 0.00 0.00 0.00 3.51
3625 3991 2.957402 ATGGGTTGATGTGTGTGAGT 57.043 45.000 0.00 0.00 0.00 3.41
3626 3992 3.305539 CCAAATGGGTTGATGTGTGTGAG 60.306 47.826 0.00 0.00 39.87 3.51
3627 3993 2.627221 CCAAATGGGTTGATGTGTGTGA 59.373 45.455 0.00 0.00 39.87 3.58
3628 3994 2.627221 TCCAAATGGGTTGATGTGTGTG 59.373 45.455 0.00 0.00 39.87 3.82
3629 3995 2.627699 GTCCAAATGGGTTGATGTGTGT 59.372 45.455 0.00 0.00 39.87 3.72
3630 3996 2.627221 TGTCCAAATGGGTTGATGTGTG 59.373 45.455 0.00 0.00 39.87 3.82
3631 3997 2.956132 TGTCCAAATGGGTTGATGTGT 58.044 42.857 0.00 0.00 39.87 3.72
3632 3998 3.321682 AGTTGTCCAAATGGGTTGATGTG 59.678 43.478 0.00 0.00 39.87 3.21
3633 3999 3.573967 GAGTTGTCCAAATGGGTTGATGT 59.426 43.478 0.00 0.00 39.87 3.06
3634 4000 3.573538 TGAGTTGTCCAAATGGGTTGATG 59.426 43.478 0.00 0.00 39.87 3.07
3635 4001 3.843422 TGAGTTGTCCAAATGGGTTGAT 58.157 40.909 0.00 0.00 39.87 2.57
3636 4002 3.304911 TGAGTTGTCCAAATGGGTTGA 57.695 42.857 0.00 0.00 39.87 3.18
3637 4003 3.306225 CCATGAGTTGTCCAAATGGGTTG 60.306 47.826 0.00 0.00 35.22 3.77
3638 4004 2.899256 CCATGAGTTGTCCAAATGGGTT 59.101 45.455 0.00 0.00 35.22 4.11
3639 4005 2.158325 ACCATGAGTTGTCCAAATGGGT 60.158 45.455 11.82 3.00 41.76 4.51
3640 4006 2.528564 ACCATGAGTTGTCCAAATGGG 58.471 47.619 11.82 2.51 41.76 4.00
3641 4007 5.720371 TTAACCATGAGTTGTCCAAATGG 57.280 39.130 9.13 7.39 42.88 3.16
3642 4008 6.690530 ACATTAACCATGAGTTGTCCAAATG 58.309 36.000 9.13 11.29 39.67 2.32
3643 4009 6.916360 ACATTAACCATGAGTTGTCCAAAT 57.084 33.333 9.13 0.26 39.67 2.32
3644 4010 6.773200 TGTACATTAACCATGAGTTGTCCAAA 59.227 34.615 9.13 0.00 39.67 3.28
3645 4011 6.299922 TGTACATTAACCATGAGTTGTCCAA 58.700 36.000 9.13 0.00 39.67 3.53
3646 4012 5.870706 TGTACATTAACCATGAGTTGTCCA 58.129 37.500 9.13 0.00 39.67 4.02
3647 4013 6.430000 ACTTGTACATTAACCATGAGTTGTCC 59.570 38.462 0.00 0.00 39.67 4.02
3648 4014 7.435068 ACTTGTACATTAACCATGAGTTGTC 57.565 36.000 0.00 0.00 39.67 3.18
3649 4015 6.147164 CGACTTGTACATTAACCATGAGTTGT 59.853 38.462 0.00 3.64 39.67 3.32
3650 4016 6.147164 ACGACTTGTACATTAACCATGAGTTG 59.853 38.462 0.00 0.31 39.67 3.16
3651 4017 6.228258 ACGACTTGTACATTAACCATGAGTT 58.772 36.000 0.00 0.00 42.83 3.01
3652 4018 5.790593 ACGACTTGTACATTAACCATGAGT 58.209 37.500 0.00 0.00 36.24 3.41
3653 4019 5.867174 TGACGACTTGTACATTAACCATGAG 59.133 40.000 0.00 0.00 36.24 2.90
3654 4020 5.785243 TGACGACTTGTACATTAACCATGA 58.215 37.500 0.00 0.00 36.24 3.07
3655 4021 6.474819 TTGACGACTTGTACATTAACCATG 57.525 37.500 0.00 0.00 39.07 3.66
3656 4022 7.681939 AATTGACGACTTGTACATTAACCAT 57.318 32.000 0.00 0.00 0.00 3.55
3657 4023 8.497554 GTTAATTGACGACTTGTACATTAACCA 58.502 33.333 0.00 0.00 0.00 3.67
3658 4024 7.959109 GGTTAATTGACGACTTGTACATTAACC 59.041 37.037 18.81 18.81 41.67 2.85
3659 4025 8.497554 TGGTTAATTGACGACTTGTACATTAAC 58.502 33.333 11.72 11.72 33.62 2.01
3660 4026 8.497554 GTGGTTAATTGACGACTTGTACATTAA 58.502 33.333 8.05 0.00 0.00 1.40
3661 4027 7.118101 GGTGGTTAATTGACGACTTGTACATTA 59.882 37.037 13.75 0.00 0.00 1.90
3662 4028 6.072893 GGTGGTTAATTGACGACTTGTACATT 60.073 38.462 13.75 0.00 0.00 2.71
3663 4029 5.410439 GGTGGTTAATTGACGACTTGTACAT 59.590 40.000 13.75 0.00 0.00 2.29
3670 4036 3.070446 TGTCAGGTGGTTAATTGACGACT 59.930 43.478 13.75 0.96 42.09 4.18
3673 4039 3.399330 AGTGTCAGGTGGTTAATTGACG 58.601 45.455 0.00 0.00 42.09 4.35
3714 4080 3.185797 GTCGCAAATCTTACGTTCCTTGT 59.814 43.478 0.00 0.00 0.00 3.16
3723 4089 6.573725 CAGTTTAGTTGTGTCGCAAATCTTAC 59.426 38.462 1.78 0.84 39.03 2.34
3733 4099 2.828877 TGGGTCAGTTTAGTTGTGTCG 58.171 47.619 0.00 0.00 0.00 4.35
3736 4102 4.582656 TCCAAATGGGTCAGTTTAGTTGTG 59.417 41.667 0.00 0.00 38.11 3.33
3737 4103 4.798882 TCCAAATGGGTCAGTTTAGTTGT 58.201 39.130 0.00 0.00 38.11 3.32
3749 4116 5.888161 GTCTGAATACTGAATCCAAATGGGT 59.112 40.000 0.00 0.00 38.11 4.51
3759 4126 6.715280 ACCATGAGTTGTCTGAATACTGAAT 58.285 36.000 0.00 0.00 0.00 2.57
3763 4130 7.119846 GCTTTAACCATGAGTTGTCTGAATACT 59.880 37.037 9.13 0.00 39.67 2.12
3798 4165 6.973229 AAAGTGAATAATGCATCCTTTTGC 57.027 33.333 0.00 0.00 43.07 3.68
3799 4166 8.034215 TGGTAAAGTGAATAATGCATCCTTTTG 58.966 33.333 0.00 0.00 0.00 2.44
3800 4167 8.133024 TGGTAAAGTGAATAATGCATCCTTTT 57.867 30.769 0.00 0.00 0.00 2.27
3801 4168 7.716799 TGGTAAAGTGAATAATGCATCCTTT 57.283 32.000 0.00 4.91 0.00 3.11
3802 4169 7.781693 AGATGGTAAAGTGAATAATGCATCCTT 59.218 33.333 0.00 0.00 0.00 3.36
3803 4170 7.293073 AGATGGTAAAGTGAATAATGCATCCT 58.707 34.615 0.00 0.00 0.00 3.24
3804 4171 7.516198 AGATGGTAAAGTGAATAATGCATCC 57.484 36.000 0.00 0.00 0.00 3.51
3805 4172 7.864379 CCAAGATGGTAAAGTGAATAATGCATC 59.136 37.037 0.00 0.00 31.35 3.91
3806 4173 7.201938 CCCAAGATGGTAAAGTGAATAATGCAT 60.202 37.037 0.00 0.00 35.17 3.96
3807 4174 6.096705 CCCAAGATGGTAAAGTGAATAATGCA 59.903 38.462 0.00 0.00 35.17 3.96
3808 4175 6.321181 TCCCAAGATGGTAAAGTGAATAATGC 59.679 38.462 0.00 0.00 35.17 3.56
3809 4176 7.880160 TCCCAAGATGGTAAAGTGAATAATG 57.120 36.000 0.00 0.00 35.17 1.90
3810 4177 8.917088 CAATCCCAAGATGGTAAAGTGAATAAT 58.083 33.333 0.00 0.00 35.17 1.28
3811 4178 8.112822 TCAATCCCAAGATGGTAAAGTGAATAA 58.887 33.333 0.00 0.00 35.17 1.40
3812 4179 7.556275 GTCAATCCCAAGATGGTAAAGTGAATA 59.444 37.037 0.00 0.00 35.17 1.75
3813 4180 6.378280 GTCAATCCCAAGATGGTAAAGTGAAT 59.622 38.462 0.00 0.00 35.17 2.57
3814 4181 5.710099 GTCAATCCCAAGATGGTAAAGTGAA 59.290 40.000 0.00 0.00 35.17 3.18
3815 4182 5.014123 AGTCAATCCCAAGATGGTAAAGTGA 59.986 40.000 0.00 0.00 35.17 3.41
3816 4183 5.256474 AGTCAATCCCAAGATGGTAAAGTG 58.744 41.667 0.00 0.00 35.17 3.16
3843 4210 7.330208 CCTCTCAAAATGTGGAATGTGAAATTC 59.670 37.037 0.00 0.00 0.00 2.17
3852 4220 5.044624 TCCTGATCCTCTCAAAATGTGGAAT 60.045 40.000 0.00 0.00 32.14 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.