Multiple sequence alignment - TraesCS2D01G437400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G437400 chr2D 100.000 2558 0 0 1 2558 547558490 547561047 0.000000e+00 4724
1 TraesCS2D01G437400 chr2D 91.913 1657 93 18 911 2558 547574530 547576154 0.000000e+00 2279
2 TraesCS2D01G437400 chr2D 85.169 917 105 17 793 1700 547489054 547489948 0.000000e+00 911
3 TraesCS2D01G437400 chr2D 84.327 906 114 14 800 1700 547450609 547451491 0.000000e+00 861
4 TraesCS2D01G437400 chr2D 84.099 849 102 14 803 1640 547426983 547427809 0.000000e+00 789
5 TraesCS2D01G437400 chr2D 81.828 974 116 29 786 1724 547286282 547287229 0.000000e+00 761
6 TraesCS2D01G437400 chr2D 81.470 939 113 19 793 1700 547278134 547279042 0.000000e+00 713
7 TraesCS2D01G437400 chr2D 98.753 401 3 1 1 399 596567168 596567568 0.000000e+00 712
8 TraesCS2D01G437400 chr2D 86.798 356 46 1 2202 2556 547280383 547280738 1.840000e-106 396
9 TraesCS2D01G437400 chr2D 86.761 355 46 1 2202 2555 547452704 547453058 6.630000e-106 394
10 TraesCS2D01G437400 chr2D 86.286 350 47 1 2202 2550 547289047 547289396 1.860000e-101 379
11 TraesCS2D01G437400 chr2D 88.417 259 29 1 2297 2554 547491597 547491855 6.870000e-81 311
12 TraesCS2D01G437400 chr2D 79.830 352 59 7 423 765 387940137 387940485 1.970000e-61 246
13 TraesCS2D01G437400 chr2A 91.803 1769 108 10 804 2558 691392185 691390440 0.000000e+00 2429
14 TraesCS2D01G437400 chr2A 82.251 924 114 23 803 1700 690747284 690748183 0.000000e+00 752
15 TraesCS2D01G437400 chr2A 82.234 788 119 9 911 1697 690805346 690806113 0.000000e+00 660
16 TraesCS2D01G437400 chr2A 85.634 355 50 1 2202 2555 690808525 690808879 3.110000e-99 372
17 TraesCS2D01G437400 chr2A 92.105 152 9 3 797 945 690805064 690805215 7.170000e-51 211
18 TraesCS2D01G437400 chr2B 91.005 1423 89 13 908 2319 653808259 653809653 0.000000e+00 1882
19 TraesCS2D01G437400 chr2B 84.657 919 114 14 803 1718 653796087 653796981 0.000000e+00 891
20 TraesCS2D01G437400 chr2B 82.574 878 117 17 854 1724 653788261 653789109 0.000000e+00 741
21 TraesCS2D01G437400 chr2B 82.479 839 116 17 1746 2558 653800485 653801318 0.000000e+00 706
22 TraesCS2D01G437400 chr2B 87.339 545 64 3 2019 2558 653809682 653810226 1.010000e-173 619
23 TraesCS2D01G437400 chr2B 85.427 398 45 5 400 787 528970737 528970343 3.960000e-108 401
24 TraesCS2D01G437400 chr5D 99.000 400 2 1 1 398 551377470 551377071 0.000000e+00 715
25 TraesCS2D01G437400 chr5D 98.753 401 3 1 1 399 460112955 460112555 0.000000e+00 712
26 TraesCS2D01G437400 chr5D 85.217 230 27 6 565 791 141410445 141410220 1.980000e-56 230
27 TraesCS2D01G437400 chr1D 99.000 400 3 1 1 399 444431 444830 0.000000e+00 715
28 TraesCS2D01G437400 chr1D 98.753 401 4 1 1 400 457023435 457023035 0.000000e+00 712
29 TraesCS2D01G437400 chr1D 81.557 244 30 7 548 788 415664834 415664603 1.210000e-43 187
30 TraesCS2D01G437400 chr7D 98.997 399 2 1 1 397 605132241 605132639 0.000000e+00 713
31 TraesCS2D01G437400 chr6D 98.997 399 2 1 1 397 455684249 455683851 0.000000e+00 713
32 TraesCS2D01G437400 chr4D 99.000 400 1 1 1 397 314618778 314619177 0.000000e+00 713
33 TraesCS2D01G437400 chr3D 98.997 399 3 1 1 398 137083370 137082972 0.000000e+00 713
34 TraesCS2D01G437400 chr7A 79.045 377 67 6 423 788 97851495 97851120 5.470000e-62 248
35 TraesCS2D01G437400 chr5A 82.422 256 42 3 524 777 222626694 222626948 1.190000e-53 220
36 TraesCS2D01G437400 chr5A 79.725 291 41 9 1435 1720 602413163 602413440 7.220000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G437400 chr2D 547558490 547561047 2557 False 4724.000000 4724 100.000000 1 2558 1 chr2D.!!$F3 2557
1 TraesCS2D01G437400 chr2D 547574530 547576154 1624 False 2279.000000 2279 91.913000 911 2558 1 chr2D.!!$F4 1647
2 TraesCS2D01G437400 chr2D 547426983 547427809 826 False 789.000000 789 84.099000 803 1640 1 chr2D.!!$F2 837
3 TraesCS2D01G437400 chr2D 547450609 547453058 2449 False 627.500000 861 85.544000 800 2555 2 chr2D.!!$F8 1755
4 TraesCS2D01G437400 chr2D 547489054 547491855 2801 False 611.000000 911 86.793000 793 2554 2 chr2D.!!$F9 1761
5 TraesCS2D01G437400 chr2D 547286282 547289396 3114 False 570.000000 761 84.057000 786 2550 2 chr2D.!!$F7 1764
6 TraesCS2D01G437400 chr2D 547278134 547280738 2604 False 554.500000 713 84.134000 793 2556 2 chr2D.!!$F6 1763
7 TraesCS2D01G437400 chr2A 691390440 691392185 1745 True 2429.000000 2429 91.803000 804 2558 1 chr2A.!!$R1 1754
8 TraesCS2D01G437400 chr2A 690747284 690748183 899 False 752.000000 752 82.251000 803 1700 1 chr2A.!!$F1 897
9 TraesCS2D01G437400 chr2A 690805064 690808879 3815 False 414.333333 660 86.657667 797 2555 3 chr2A.!!$F2 1758
10 TraesCS2D01G437400 chr2B 653808259 653810226 1967 False 1250.500000 1882 89.172000 908 2558 2 chr2B.!!$F3 1650
11 TraesCS2D01G437400 chr2B 653796087 653801318 5231 False 798.500000 891 83.568000 803 2558 2 chr2B.!!$F2 1755
12 TraesCS2D01G437400 chr2B 653788261 653789109 848 False 741.000000 741 82.574000 854 1724 1 chr2B.!!$F1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 365 0.030638 CGGGATTAATGGCCTTTGCG 59.969 55.0 13.96 0.00 38.85 4.85 F
501 502 0.036388 ACGGGTTGCAATCGTCTCAT 60.036 50.0 20.07 3.16 30.89 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1707 0.036164 ATCTGCAAACAGCCACGGTA 59.964 50.000 0.0 0.0 44.10 4.02 R
1611 1841 3.175976 AACGCCTTGTTTCGCACCG 62.176 57.895 0.0 0.0 37.59 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.889128 ATTCCTTTTGAATTCTTCTTGTTTGAA 57.111 25.926 7.05 0.00 40.92 2.69
34 35 9.717942 TTCCTTTTGAATTCTTCTTGTTTGAAA 57.282 25.926 7.05 0.00 0.00 2.69
35 36 9.889128 TCCTTTTGAATTCTTCTTGTTTGAAAT 57.111 25.926 7.05 0.00 0.00 2.17
45 46 9.761504 TTCTTCTTGTTTGAAATTTCATATGCA 57.238 25.926 21.10 13.98 37.00 3.96
46 47 9.932207 TCTTCTTGTTTGAAATTTCATATGCAT 57.068 25.926 21.10 3.79 37.00 3.96
47 48 9.967245 CTTCTTGTTTGAAATTTCATATGCATG 57.033 29.630 21.10 16.75 37.00 4.06
48 49 9.491675 TTCTTGTTTGAAATTTCATATGCATGT 57.508 25.926 21.10 0.00 37.00 3.21
63 64 9.555727 TCATATGCATGTATATAGTAGCGTAGA 57.444 33.333 14.95 3.89 33.57 2.59
76 77 8.843885 ATAGTAGCGTAGAATATGTGTACTGA 57.156 34.615 0.00 0.00 33.95 3.41
77 78 7.563888 AGTAGCGTAGAATATGTGTACTGAA 57.436 36.000 0.00 0.00 32.08 3.02
78 79 7.993101 AGTAGCGTAGAATATGTGTACTGAAA 58.007 34.615 0.00 0.00 32.08 2.69
79 80 7.914346 AGTAGCGTAGAATATGTGTACTGAAAC 59.086 37.037 0.00 0.00 32.08 2.78
80 81 6.864342 AGCGTAGAATATGTGTACTGAAACT 58.136 36.000 0.00 0.00 0.00 2.66
81 82 7.321153 AGCGTAGAATATGTGTACTGAAACTT 58.679 34.615 0.00 0.00 0.00 2.66
82 83 7.488471 AGCGTAGAATATGTGTACTGAAACTTC 59.512 37.037 0.00 0.00 0.00 3.01
83 84 7.274904 GCGTAGAATATGTGTACTGAAACTTCA 59.725 37.037 0.00 0.00 35.57 3.02
84 85 9.302345 CGTAGAATATGTGTACTGAAACTTCAT 57.698 33.333 0.00 0.00 36.46 2.57
87 88 9.725019 AGAATATGTGTACTGAAACTTCATCAA 57.275 29.630 0.00 0.00 36.46 2.57
153 154 9.594478 AACACTACAAATTAAAAAGAAACCAGG 57.406 29.630 0.00 0.00 0.00 4.45
154 155 8.755028 ACACTACAAATTAAAAAGAAACCAGGT 58.245 29.630 0.00 0.00 0.00 4.00
155 156 9.594478 CACTACAAATTAAAAAGAAACCAGGTT 57.406 29.630 0.00 0.00 0.00 3.50
159 160 9.607988 ACAAATTAAAAAGAAACCAGGTTTAGG 57.392 29.630 18.08 0.00 35.77 2.69
160 161 9.051679 CAAATTAAAAAGAAACCAGGTTTAGGG 57.948 33.333 18.08 0.00 35.77 3.53
161 162 6.734502 TTAAAAAGAAACCAGGTTTAGGGG 57.265 37.500 18.08 0.00 35.77 4.79
162 163 2.992847 AAGAAACCAGGTTTAGGGGG 57.007 50.000 18.08 0.00 35.77 5.40
182 183 1.471287 GGCTAAAACCCTAAACCTGCG 59.529 52.381 0.00 0.00 0.00 5.18
183 184 1.471287 GCTAAAACCCTAAACCTGCGG 59.529 52.381 0.00 0.00 0.00 5.69
184 185 2.876892 GCTAAAACCCTAAACCTGCGGA 60.877 50.000 0.00 0.00 0.00 5.54
185 186 1.905637 AAAACCCTAAACCTGCGGAG 58.094 50.000 0.00 0.00 0.00 4.63
186 187 0.037734 AAACCCTAAACCTGCGGAGG 59.962 55.000 22.94 22.94 46.21 4.30
187 188 0.838987 AACCCTAAACCTGCGGAGGA 60.839 55.000 31.46 6.29 42.93 3.71
195 196 3.309582 CTGCGGAGGAGGCCTTTA 58.690 61.111 6.77 0.00 44.33 1.85
196 197 1.144936 CTGCGGAGGAGGCCTTTAG 59.855 63.158 6.77 0.00 44.33 1.85
197 198 1.612442 TGCGGAGGAGGCCTTTAGT 60.612 57.895 6.77 0.00 31.76 2.24
198 199 1.144276 GCGGAGGAGGCCTTTAGTC 59.856 63.158 6.77 0.92 31.76 2.59
199 200 1.823976 CGGAGGAGGCCTTTAGTCC 59.176 63.158 6.77 10.10 31.76 3.85
200 201 1.687297 CGGAGGAGGCCTTTAGTCCC 61.687 65.000 6.77 1.20 31.76 4.46
201 202 1.687297 GGAGGAGGCCTTTAGTCCCG 61.687 65.000 6.77 0.00 31.76 5.14
202 203 1.687297 GAGGAGGCCTTTAGTCCCGG 61.687 65.000 6.77 0.00 31.76 5.73
203 204 1.993948 GGAGGCCTTTAGTCCCGGT 60.994 63.158 6.77 0.00 0.00 5.28
204 205 1.559965 GGAGGCCTTTAGTCCCGGTT 61.560 60.000 6.77 0.00 0.00 4.44
205 206 1.197812 GAGGCCTTTAGTCCCGGTTA 58.802 55.000 6.77 0.00 0.00 2.85
206 207 1.138464 GAGGCCTTTAGTCCCGGTTAG 59.862 57.143 6.77 0.00 0.00 2.34
207 208 0.463295 GGCCTTTAGTCCCGGTTAGC 60.463 60.000 0.00 0.00 0.00 3.09
208 209 0.463295 GCCTTTAGTCCCGGTTAGCC 60.463 60.000 0.00 0.00 0.00 3.93
209 210 0.906775 CCTTTAGTCCCGGTTAGCCA 59.093 55.000 0.00 0.00 34.09 4.75
210 211 1.406477 CCTTTAGTCCCGGTTAGCCAC 60.406 57.143 0.00 0.00 34.09 5.01
211 212 0.247185 TTTAGTCCCGGTTAGCCACG 59.753 55.000 0.00 0.00 34.09 4.94
212 213 0.611618 TTAGTCCCGGTTAGCCACGA 60.612 55.000 0.00 0.00 34.09 4.35
213 214 1.033746 TAGTCCCGGTTAGCCACGAG 61.034 60.000 0.00 0.00 34.09 4.18
214 215 2.036098 TCCCGGTTAGCCACGAGA 59.964 61.111 0.00 0.00 34.09 4.04
215 216 1.607178 TCCCGGTTAGCCACGAGAA 60.607 57.895 0.00 0.00 34.09 2.87
216 217 1.447314 CCCGGTTAGCCACGAGAAC 60.447 63.158 0.00 0.00 34.09 3.01
217 218 1.447314 CCGGTTAGCCACGAGAACC 60.447 63.158 0.00 0.00 39.44 3.62
218 219 4.180496 GGTTAGCCACGAGAACCG 57.820 61.111 0.00 0.00 45.44 4.44
219 220 1.447314 GGTTAGCCACGAGAACCGG 60.447 63.158 0.00 0.00 43.93 5.28
220 221 1.447314 GTTAGCCACGAGAACCGGG 60.447 63.158 6.32 0.00 43.93 5.73
221 222 1.607178 TTAGCCACGAGAACCGGGA 60.607 57.895 6.32 0.00 46.66 5.14
222 223 1.880819 TTAGCCACGAGAACCGGGAC 61.881 60.000 6.32 0.00 46.66 4.46
223 224 2.776370 TAGCCACGAGAACCGGGACT 62.776 60.000 6.32 4.01 46.66 3.85
224 225 2.345760 GCCACGAGAACCGGGACTA 61.346 63.158 6.32 0.00 46.66 2.59
225 226 1.880819 GCCACGAGAACCGGGACTAA 61.881 60.000 6.32 0.00 46.66 2.24
226 227 0.604578 CCACGAGAACCGGGACTAAA 59.395 55.000 6.32 0.00 46.66 1.85
227 228 1.403780 CCACGAGAACCGGGACTAAAG 60.404 57.143 6.32 2.68 46.66 1.85
228 229 0.893447 ACGAGAACCGGGACTAAAGG 59.107 55.000 6.32 0.00 43.93 3.11
229 230 0.893447 CGAGAACCGGGACTAAAGGT 59.107 55.000 6.32 0.00 40.50 3.50
230 231 1.135170 CGAGAACCGGGACTAAAGGTC 60.135 57.143 6.32 0.00 43.79 3.85
238 239 1.521141 GACTAAAGGTCCTCCGCCC 59.479 63.158 0.00 0.00 38.93 6.13
239 240 1.969200 GACTAAAGGTCCTCCGCCCC 61.969 65.000 0.00 0.00 38.93 5.80
240 241 3.078836 TAAAGGTCCTCCGCCCCG 61.079 66.667 0.00 0.00 39.05 5.73
241 242 3.605412 TAAAGGTCCTCCGCCCCGA 62.605 63.158 0.00 0.00 39.05 5.14
273 274 4.636435 CCACGTGGACGGGCCTTT 62.636 66.667 31.31 0.00 42.34 3.11
274 275 2.344500 CACGTGGACGGGCCTTTA 59.656 61.111 7.95 0.00 44.95 1.85
275 276 1.740296 CACGTGGACGGGCCTTTAG 60.740 63.158 7.95 0.00 44.95 1.85
276 277 2.212110 ACGTGGACGGGCCTTTAGT 61.212 57.895 0.84 0.00 44.95 2.24
277 278 1.447314 CGTGGACGGGCCTTTAGTC 60.447 63.158 0.84 7.66 37.63 2.59
278 279 1.447314 GTGGACGGGCCTTTAGTCG 60.447 63.158 0.84 0.00 37.63 4.18
279 280 2.510918 GGACGGGCCTTTAGTCGC 60.511 66.667 0.84 0.00 35.87 5.19
280 281 2.884207 GACGGGCCTTTAGTCGCG 60.884 66.667 0.84 0.00 43.02 5.87
281 282 4.446413 ACGGGCCTTTAGTCGCGG 62.446 66.667 6.13 0.00 41.92 6.46
282 283 4.446413 CGGGCCTTTAGTCGCGGT 62.446 66.667 6.13 0.00 35.43 5.68
283 284 2.046604 GGGCCTTTAGTCGCGGTT 60.047 61.111 6.13 0.00 0.00 4.44
284 285 2.104859 GGGCCTTTAGTCGCGGTTC 61.105 63.158 6.13 0.00 0.00 3.62
285 286 2.450345 GGCCTTTAGTCGCGGTTCG 61.450 63.158 6.13 0.00 40.15 3.95
286 287 1.735559 GCCTTTAGTCGCGGTTCGT 60.736 57.895 6.13 0.00 39.67 3.85
287 288 0.456653 GCCTTTAGTCGCGGTTCGTA 60.457 55.000 6.13 0.00 39.67 3.43
288 289 1.981254 CCTTTAGTCGCGGTTCGTAA 58.019 50.000 6.13 0.00 39.67 3.18
289 290 1.916000 CCTTTAGTCGCGGTTCGTAAG 59.084 52.381 6.13 3.09 39.67 2.34
300 301 4.206958 TCGTAAGAGGCGCGACTA 57.793 55.556 18.29 0.00 45.01 2.59
301 302 2.470156 TCGTAAGAGGCGCGACTAA 58.530 52.632 18.29 0.00 45.01 2.24
302 303 0.804364 TCGTAAGAGGCGCGACTAAA 59.196 50.000 18.29 0.00 45.01 1.85
303 304 1.189403 CGTAAGAGGCGCGACTAAAG 58.811 55.000 18.29 1.48 43.02 1.85
304 305 1.557651 GTAAGAGGCGCGACTAAAGG 58.442 55.000 18.29 0.00 0.00 3.11
305 306 0.458669 TAAGAGGCGCGACTAAAGGG 59.541 55.000 18.29 0.00 0.00 3.95
306 307 2.202892 GAGGCGCGACTAAAGGGG 60.203 66.667 18.29 0.00 0.00 4.79
307 308 3.735037 GAGGCGCGACTAAAGGGGG 62.735 68.421 18.29 0.00 0.00 5.40
322 323 4.770874 GGGGGCTTTAGTCGCGCA 62.771 66.667 8.75 0.00 41.52 6.09
323 324 2.513897 GGGGCTTTAGTCGCGCAT 60.514 61.111 8.75 0.00 41.52 4.73
324 325 1.227438 GGGGCTTTAGTCGCGCATA 60.227 57.895 8.75 0.00 41.52 3.14
325 326 0.602905 GGGGCTTTAGTCGCGCATAT 60.603 55.000 8.75 0.00 41.52 1.78
326 327 1.226746 GGGCTTTAGTCGCGCATATT 58.773 50.000 8.75 0.00 39.76 1.28
327 328 1.602377 GGGCTTTAGTCGCGCATATTT 59.398 47.619 8.75 0.00 39.76 1.40
328 329 2.803956 GGGCTTTAGTCGCGCATATTTA 59.196 45.455 8.75 0.00 39.76 1.40
329 330 3.120649 GGGCTTTAGTCGCGCATATTTAG 60.121 47.826 8.75 0.00 39.76 1.85
330 331 3.493503 GGCTTTAGTCGCGCATATTTAGT 59.506 43.478 8.75 0.00 0.00 2.24
331 332 4.376109 GGCTTTAGTCGCGCATATTTAGTC 60.376 45.833 8.75 0.00 0.00 2.59
332 333 4.376109 GCTTTAGTCGCGCATATTTAGTCC 60.376 45.833 8.75 0.00 0.00 3.85
333 334 2.150397 AGTCGCGCATATTTAGTCCC 57.850 50.000 8.75 0.00 0.00 4.46
334 335 0.782384 GTCGCGCATATTTAGTCCCG 59.218 55.000 8.75 0.00 0.00 5.14
335 336 0.319211 TCGCGCATATTTAGTCCCGG 60.319 55.000 8.75 0.00 0.00 5.73
336 337 0.599204 CGCGCATATTTAGTCCCGGT 60.599 55.000 8.75 0.00 0.00 5.28
337 338 1.589803 GCGCATATTTAGTCCCGGTT 58.410 50.000 0.30 0.00 0.00 4.44
338 339 1.263217 GCGCATATTTAGTCCCGGTTG 59.737 52.381 0.30 0.00 0.00 3.77
339 340 1.263217 CGCATATTTAGTCCCGGTTGC 59.737 52.381 0.00 0.00 0.00 4.17
340 341 2.294074 GCATATTTAGTCCCGGTTGCA 58.706 47.619 0.00 0.00 0.00 4.08
341 342 2.032924 GCATATTTAGTCCCGGTTGCAC 59.967 50.000 0.00 0.00 0.00 4.57
342 343 3.275143 CATATTTAGTCCCGGTTGCACA 58.725 45.455 0.00 0.00 0.00 4.57
343 344 1.821216 ATTTAGTCCCGGTTGCACAG 58.179 50.000 0.00 0.00 0.00 3.66
344 345 0.887387 TTTAGTCCCGGTTGCACAGC 60.887 55.000 0.00 0.00 0.00 4.40
345 346 2.741486 TTAGTCCCGGTTGCACAGCC 62.741 60.000 0.00 0.00 0.00 4.85
351 352 2.676471 GGTTGCACAGCCGGGATT 60.676 61.111 2.18 0.00 0.00 3.01
352 353 1.377987 GGTTGCACAGCCGGGATTA 60.378 57.895 2.18 0.00 0.00 1.75
353 354 0.963355 GGTTGCACAGCCGGGATTAA 60.963 55.000 2.18 0.00 0.00 1.40
354 355 1.102978 GTTGCACAGCCGGGATTAAT 58.897 50.000 2.18 0.00 0.00 1.40
355 356 1.102154 TTGCACAGCCGGGATTAATG 58.898 50.000 2.18 0.00 0.00 1.90
356 357 0.751277 TGCACAGCCGGGATTAATGG 60.751 55.000 2.18 0.00 0.00 3.16
360 361 4.599036 GCCGGGATTAATGGCCTT 57.401 55.556 3.32 0.00 43.06 4.35
361 362 2.820845 GCCGGGATTAATGGCCTTT 58.179 52.632 3.32 6.72 43.06 3.11
362 363 0.389025 GCCGGGATTAATGGCCTTTG 59.611 55.000 13.96 0.00 43.06 2.77
363 364 0.389025 CCGGGATTAATGGCCTTTGC 59.611 55.000 13.96 3.60 0.00 3.68
364 365 0.030638 CGGGATTAATGGCCTTTGCG 59.969 55.000 13.96 0.00 38.85 4.85
365 366 1.398692 GGGATTAATGGCCTTTGCGA 58.601 50.000 13.96 0.85 38.85 5.10
366 367 1.754226 GGGATTAATGGCCTTTGCGAA 59.246 47.619 13.96 1.05 38.85 4.70
367 368 2.481276 GGGATTAATGGCCTTTGCGAAC 60.481 50.000 13.96 1.15 38.85 3.95
368 369 2.481276 GGATTAATGGCCTTTGCGAACC 60.481 50.000 13.96 6.63 38.85 3.62
369 370 0.523966 TTAATGGCCTTTGCGAACCG 59.476 50.000 13.96 0.00 38.85 4.44
370 371 1.309499 TAATGGCCTTTGCGAACCGG 61.309 55.000 13.96 0.00 38.85 5.28
373 374 3.733960 GCCTTTGCGAACCGGGAC 61.734 66.667 6.32 0.00 0.00 4.46
374 375 2.032071 CCTTTGCGAACCGGGACT 59.968 61.111 6.32 0.00 0.00 3.85
375 376 1.294138 CCTTTGCGAACCGGGACTA 59.706 57.895 6.32 0.00 0.00 2.59
376 377 0.320946 CCTTTGCGAACCGGGACTAA 60.321 55.000 6.32 0.00 0.00 2.24
377 378 1.515081 CTTTGCGAACCGGGACTAAA 58.485 50.000 6.32 0.00 0.00 1.85
378 379 1.463444 CTTTGCGAACCGGGACTAAAG 59.537 52.381 6.32 6.26 0.00 1.85
379 380 0.320946 TTGCGAACCGGGACTAAAGG 60.321 55.000 6.32 0.00 0.00 3.11
380 381 2.104859 GCGAACCGGGACTAAAGGC 61.105 63.158 6.32 0.00 0.00 4.35
381 382 1.449070 CGAACCGGGACTAAAGGCC 60.449 63.158 6.32 0.00 0.00 5.19
382 383 1.896122 CGAACCGGGACTAAAGGCCT 61.896 60.000 6.32 0.00 0.00 5.19
383 384 1.197812 GAACCGGGACTAAAGGCCTA 58.802 55.000 5.16 0.00 0.00 3.93
384 385 1.767088 GAACCGGGACTAAAGGCCTAT 59.233 52.381 5.16 0.00 0.00 2.57
385 386 1.889174 ACCGGGACTAAAGGCCTATT 58.111 50.000 5.16 5.49 0.00 1.73
386 387 1.767088 ACCGGGACTAAAGGCCTATTC 59.233 52.381 5.16 0.00 0.00 1.75
387 388 2.047830 CCGGGACTAAAGGCCTATTCT 58.952 52.381 5.16 0.00 0.00 2.40
388 389 2.037381 CCGGGACTAAAGGCCTATTCTC 59.963 54.545 5.16 0.00 0.00 2.87
389 390 2.966516 CGGGACTAAAGGCCTATTCTCT 59.033 50.000 5.16 0.00 0.00 3.10
390 391 4.150359 CGGGACTAAAGGCCTATTCTCTA 58.850 47.826 5.16 0.00 0.00 2.43
391 392 4.022155 CGGGACTAAAGGCCTATTCTCTAC 60.022 50.000 5.16 0.00 0.00 2.59
392 393 4.283978 GGGACTAAAGGCCTATTCTCTACC 59.716 50.000 5.16 2.55 0.00 3.18
393 394 4.900054 GGACTAAAGGCCTATTCTCTACCA 59.100 45.833 5.16 0.00 0.00 3.25
394 395 5.011227 GGACTAAAGGCCTATTCTCTACCAG 59.989 48.000 5.16 0.00 0.00 4.00
395 396 5.530243 ACTAAAGGCCTATTCTCTACCAGT 58.470 41.667 5.16 0.00 0.00 4.00
396 397 4.762289 AAAGGCCTATTCTCTACCAGTG 57.238 45.455 5.16 0.00 0.00 3.66
397 398 3.406512 AGGCCTATTCTCTACCAGTGT 57.593 47.619 1.29 0.00 0.00 3.55
398 399 4.537945 AGGCCTATTCTCTACCAGTGTA 57.462 45.455 1.29 0.00 0.00 2.90
399 400 4.475345 AGGCCTATTCTCTACCAGTGTAG 58.525 47.826 1.29 0.00 44.90 2.74
410 411 3.769739 ACCAGTGTAGAAACTGCATGA 57.230 42.857 0.00 0.00 45.17 3.07
411 412 4.292186 ACCAGTGTAGAAACTGCATGAT 57.708 40.909 0.00 0.00 45.17 2.45
412 413 4.256920 ACCAGTGTAGAAACTGCATGATC 58.743 43.478 0.00 0.00 45.17 2.92
413 414 3.308053 CCAGTGTAGAAACTGCATGATCG 59.692 47.826 0.00 0.00 45.17 3.69
414 415 4.176271 CAGTGTAGAAACTGCATGATCGA 58.824 43.478 0.00 0.00 41.05 3.59
415 416 4.807834 CAGTGTAGAAACTGCATGATCGAT 59.192 41.667 0.00 0.00 41.05 3.59
416 417 5.292834 CAGTGTAGAAACTGCATGATCGATT 59.707 40.000 0.00 0.00 41.05 3.34
417 418 5.292834 AGTGTAGAAACTGCATGATCGATTG 59.707 40.000 0.00 0.00 0.00 2.67
418 419 5.063944 GTGTAGAAACTGCATGATCGATTGT 59.936 40.000 0.00 0.00 0.00 2.71
419 420 5.643348 TGTAGAAACTGCATGATCGATTGTT 59.357 36.000 0.00 0.00 0.00 2.83
420 421 4.978186 AGAAACTGCATGATCGATTGTTG 58.022 39.130 0.00 0.00 0.00 3.33
421 422 2.838386 ACTGCATGATCGATTGTTGC 57.162 45.000 16.64 16.64 0.00 4.17
422 423 1.063027 ACTGCATGATCGATTGTTGCG 59.937 47.619 17.66 15.18 36.11 4.85
423 424 0.248175 TGCATGATCGATTGTTGCGC 60.248 50.000 17.66 0.00 36.11 6.09
424 425 1.257586 GCATGATCGATTGTTGCGCG 61.258 55.000 0.00 0.00 0.00 6.86
425 426 0.655337 CATGATCGATTGTTGCGCGG 60.655 55.000 8.83 0.00 0.00 6.46
426 427 0.809636 ATGATCGATTGTTGCGCGGA 60.810 50.000 8.83 0.00 0.00 5.54
427 428 0.809636 TGATCGATTGTTGCGCGGAT 60.810 50.000 8.83 0.00 0.00 4.18
428 429 0.383491 GATCGATTGTTGCGCGGATG 60.383 55.000 8.83 0.00 0.00 3.51
429 430 2.378945 ATCGATTGTTGCGCGGATGC 62.379 55.000 8.83 1.40 37.91 3.91
430 431 2.793946 GATTGTTGCGCGGATGCT 59.206 55.556 8.83 0.00 39.65 3.79
431 432 1.297893 GATTGTTGCGCGGATGCTC 60.298 57.895 8.83 0.00 39.65 4.26
432 433 1.709147 GATTGTTGCGCGGATGCTCT 61.709 55.000 8.83 0.00 39.65 4.09
433 434 1.985447 ATTGTTGCGCGGATGCTCTG 61.985 55.000 8.83 0.00 39.65 3.35
434 435 2.815211 GTTGCGCGGATGCTCTGA 60.815 61.111 8.83 0.00 39.65 3.27
435 436 2.815211 TTGCGCGGATGCTCTGAC 60.815 61.111 8.83 0.00 39.65 3.51
436 437 3.588057 TTGCGCGGATGCTCTGACA 62.588 57.895 8.83 0.00 39.65 3.58
437 438 3.260483 GCGCGGATGCTCTGACAG 61.260 66.667 8.83 0.00 39.65 3.51
463 464 2.526077 GCGTTAGCATTTAGGTTTGGC 58.474 47.619 0.00 0.00 44.35 4.52
464 465 2.734175 GCGTTAGCATTTAGGTTTGGCC 60.734 50.000 0.00 0.00 44.35 5.36
465 466 4.982269 GCGTTAGCATTTAGGTTTGGCCT 61.982 47.826 3.32 0.00 46.63 5.19
466 467 5.693418 GCGTTAGCATTTAGGTTTGGCCTA 61.693 45.833 3.32 0.00 44.56 3.93
467 468 7.434014 GCGTTAGCATTTAGGTTTGGCCTAG 62.434 48.000 3.32 0.00 45.86 3.02
476 477 3.257469 GGTTTGGCCTAGTACTGGTAC 57.743 52.381 5.39 2.97 36.35 3.34
477 478 2.568509 GGTTTGGCCTAGTACTGGTACA 59.431 50.000 5.39 0.63 38.48 2.90
478 479 3.008266 GGTTTGGCCTAGTACTGGTACAA 59.992 47.826 5.39 7.16 38.70 2.41
479 480 4.505390 GGTTTGGCCTAGTACTGGTACAAA 60.505 45.833 16.32 16.32 38.70 2.83
480 481 4.978438 TTGGCCTAGTACTGGTACAAAA 57.022 40.909 5.39 0.00 38.70 2.44
481 482 4.546829 TGGCCTAGTACTGGTACAAAAG 57.453 45.455 5.39 7.12 38.70 2.27
482 483 4.161876 TGGCCTAGTACTGGTACAAAAGA 58.838 43.478 5.39 0.00 38.70 2.52
483 484 4.020839 TGGCCTAGTACTGGTACAAAAGAC 60.021 45.833 5.39 0.00 38.70 3.01
484 485 4.171754 GCCTAGTACTGGTACAAAAGACG 58.828 47.826 5.39 0.00 38.70 4.18
485 486 4.741342 CCTAGTACTGGTACAAAAGACGG 58.259 47.826 5.39 0.34 38.70 4.79
486 487 3.672767 AGTACTGGTACAAAAGACGGG 57.327 47.619 12.54 0.00 38.70 5.28
487 488 2.967887 AGTACTGGTACAAAAGACGGGT 59.032 45.455 12.54 0.00 38.70 5.28
488 489 3.389002 AGTACTGGTACAAAAGACGGGTT 59.611 43.478 12.54 0.00 38.70 4.11
489 490 2.567985 ACTGGTACAAAAGACGGGTTG 58.432 47.619 0.00 0.00 38.70 3.77
490 491 1.265905 CTGGTACAAAAGACGGGTTGC 59.734 52.381 0.00 0.00 38.70 4.17
491 492 1.310904 GGTACAAAAGACGGGTTGCA 58.689 50.000 0.00 0.00 0.00 4.08
492 493 1.677052 GGTACAAAAGACGGGTTGCAA 59.323 47.619 0.00 0.00 0.00 4.08
493 494 2.295070 GGTACAAAAGACGGGTTGCAAT 59.705 45.455 0.59 0.00 0.00 3.56
494 495 2.793278 ACAAAAGACGGGTTGCAATC 57.207 45.000 0.59 0.00 0.00 2.67
495 496 1.001815 ACAAAAGACGGGTTGCAATCG 60.002 47.619 19.00 19.00 0.00 3.34
496 497 1.001815 CAAAAGACGGGTTGCAATCGT 60.002 47.619 23.95 23.95 39.99 3.73
498 499 4.278956 GACGGGTTGCAATCGTCT 57.721 55.556 32.10 15.35 46.49 4.18
499 500 2.079049 GACGGGTTGCAATCGTCTC 58.921 57.895 32.10 18.84 46.49 3.36
500 501 0.669318 GACGGGTTGCAATCGTCTCA 60.669 55.000 32.10 0.00 46.49 3.27
501 502 0.036388 ACGGGTTGCAATCGTCTCAT 60.036 50.000 20.07 3.16 30.89 2.90
502 503 1.086696 CGGGTTGCAATCGTCTCATT 58.913 50.000 0.59 0.00 0.00 2.57
503 504 2.276201 CGGGTTGCAATCGTCTCATTA 58.724 47.619 0.59 0.00 0.00 1.90
504 505 2.872245 CGGGTTGCAATCGTCTCATTAT 59.128 45.455 0.59 0.00 0.00 1.28
505 506 3.312421 CGGGTTGCAATCGTCTCATTATT 59.688 43.478 0.59 0.00 0.00 1.40
506 507 4.509970 CGGGTTGCAATCGTCTCATTATTA 59.490 41.667 0.59 0.00 0.00 0.98
507 508 5.007234 CGGGTTGCAATCGTCTCATTATTAA 59.993 40.000 0.59 0.00 0.00 1.40
508 509 6.293407 CGGGTTGCAATCGTCTCATTATTAAT 60.293 38.462 0.59 0.00 0.00 1.40
509 510 7.425606 GGGTTGCAATCGTCTCATTATTAATT 58.574 34.615 0.59 0.00 0.00 1.40
510 511 7.591426 GGGTTGCAATCGTCTCATTATTAATTC 59.409 37.037 0.59 0.00 0.00 2.17
511 512 8.345565 GGTTGCAATCGTCTCATTATTAATTCT 58.654 33.333 0.59 0.00 0.00 2.40
512 513 9.162793 GTTGCAATCGTCTCATTATTAATTCTG 57.837 33.333 0.59 0.00 0.00 3.02
513 514 8.661352 TGCAATCGTCTCATTATTAATTCTGA 57.339 30.769 0.00 0.00 0.00 3.27
514 515 9.276590 TGCAATCGTCTCATTATTAATTCTGAT 57.723 29.630 0.00 0.00 0.00 2.90
537 538 9.605955 TGATAACATAAAACACAATGAAGAACG 57.394 29.630 0.00 0.00 0.00 3.95
538 539 8.964420 ATAACATAAAACACAATGAAGAACGG 57.036 30.769 0.00 0.00 0.00 4.44
539 540 6.627395 ACATAAAACACAATGAAGAACGGA 57.373 33.333 0.00 0.00 0.00 4.69
540 541 6.668323 ACATAAAACACAATGAAGAACGGAG 58.332 36.000 0.00 0.00 0.00 4.63
541 542 4.568152 AAAACACAATGAAGAACGGAGG 57.432 40.909 0.00 0.00 0.00 4.30
542 543 2.930826 ACACAATGAAGAACGGAGGT 57.069 45.000 0.00 0.00 0.00 3.85
543 544 2.767505 ACACAATGAAGAACGGAGGTC 58.232 47.619 0.00 0.00 0.00 3.85
544 545 1.726791 CACAATGAAGAACGGAGGTCG 59.273 52.381 0.00 0.00 45.88 4.79
545 546 0.721718 CAATGAAGAACGGAGGTCGC 59.278 55.000 0.00 0.00 43.89 5.19
546 547 0.320374 AATGAAGAACGGAGGTCGCA 59.680 50.000 0.00 0.00 43.89 5.10
547 548 0.389948 ATGAAGAACGGAGGTCGCAC 60.390 55.000 0.00 0.00 43.89 5.34
548 549 1.289380 GAAGAACGGAGGTCGCACT 59.711 57.895 0.00 0.00 43.89 4.40
549 550 1.006102 AAGAACGGAGGTCGCACTG 60.006 57.895 0.00 0.00 43.89 3.66
550 551 3.112709 GAACGGAGGTCGCACTGC 61.113 66.667 0.00 0.00 43.89 4.40
551 552 3.858868 GAACGGAGGTCGCACTGCA 62.859 63.158 1.11 0.00 43.89 4.41
552 553 3.865929 AACGGAGGTCGCACTGCAG 62.866 63.158 13.48 13.48 43.89 4.41
554 555 3.695606 GGAGGTCGCACTGCAGGA 61.696 66.667 19.93 2.44 0.00 3.86
555 556 2.125753 GAGGTCGCACTGCAGGAG 60.126 66.667 19.93 11.42 0.00 3.69
556 557 4.385405 AGGTCGCACTGCAGGAGC 62.385 66.667 19.93 19.87 42.57 4.70
573 574 2.962089 GCGGTGGCTGCAATTATTG 58.038 52.632 0.50 0.00 35.55 1.90
574 575 0.455410 GCGGTGGCTGCAATTATTGA 59.545 50.000 9.36 0.00 35.55 2.57
575 576 1.534595 GCGGTGGCTGCAATTATTGAG 60.535 52.381 9.36 4.83 35.55 3.02
576 577 1.066002 CGGTGGCTGCAATTATTGAGG 59.934 52.381 9.36 1.56 0.00 3.86
577 578 2.378038 GGTGGCTGCAATTATTGAGGA 58.622 47.619 9.36 0.00 0.00 3.71
578 579 2.961062 GGTGGCTGCAATTATTGAGGAT 59.039 45.455 9.36 0.00 0.00 3.24
579 580 3.385755 GGTGGCTGCAATTATTGAGGATT 59.614 43.478 9.36 0.00 0.00 3.01
580 581 4.365723 GTGGCTGCAATTATTGAGGATTG 58.634 43.478 9.36 0.00 36.56 2.67
612 613 9.567776 TTATGACTTGTGATTTTTCTCTTACCA 57.432 29.630 0.00 0.00 0.00 3.25
613 614 7.496529 TGACTTGTGATTTTTCTCTTACCAG 57.503 36.000 0.00 0.00 0.00 4.00
614 615 7.054124 TGACTTGTGATTTTTCTCTTACCAGT 58.946 34.615 0.00 0.00 0.00 4.00
615 616 7.556275 TGACTTGTGATTTTTCTCTTACCAGTT 59.444 33.333 0.00 0.00 0.00 3.16
616 617 8.293699 ACTTGTGATTTTTCTCTTACCAGTTT 57.706 30.769 0.00 0.00 0.00 2.66
617 618 8.749354 ACTTGTGATTTTTCTCTTACCAGTTTT 58.251 29.630 0.00 0.00 0.00 2.43
618 619 8.925161 TTGTGATTTTTCTCTTACCAGTTTTG 57.075 30.769 0.00 0.00 0.00 2.44
619 620 8.287439 TGTGATTTTTCTCTTACCAGTTTTGA 57.713 30.769 0.00 0.00 0.00 2.69
620 621 8.405531 TGTGATTTTTCTCTTACCAGTTTTGAG 58.594 33.333 0.00 0.00 0.00 3.02
621 622 7.379797 GTGATTTTTCTCTTACCAGTTTTGAGC 59.620 37.037 0.00 0.00 0.00 4.26
622 623 6.767524 TTTTTCTCTTACCAGTTTTGAGCA 57.232 33.333 0.00 0.00 0.00 4.26
623 624 6.959639 TTTTCTCTTACCAGTTTTGAGCAT 57.040 33.333 0.00 0.00 0.00 3.79
624 625 6.959639 TTTCTCTTACCAGTTTTGAGCATT 57.040 33.333 0.00 0.00 0.00 3.56
625 626 5.947228 TCTCTTACCAGTTTTGAGCATTG 57.053 39.130 0.00 0.00 0.00 2.82
626 627 5.376625 TCTCTTACCAGTTTTGAGCATTGT 58.623 37.500 0.00 0.00 0.00 2.71
627 628 6.530120 TCTCTTACCAGTTTTGAGCATTGTA 58.470 36.000 0.00 0.00 0.00 2.41
628 629 6.995686 TCTCTTACCAGTTTTGAGCATTGTAA 59.004 34.615 0.00 0.00 0.00 2.41
629 630 7.665559 TCTCTTACCAGTTTTGAGCATTGTAAT 59.334 33.333 0.00 0.00 0.00 1.89
630 631 8.856153 TCTTACCAGTTTTGAGCATTGTAATA 57.144 30.769 0.00 0.00 0.00 0.98
631 632 8.946085 TCTTACCAGTTTTGAGCATTGTAATAG 58.054 33.333 0.00 0.00 0.00 1.73
632 633 8.856153 TTACCAGTTTTGAGCATTGTAATAGA 57.144 30.769 0.00 0.00 0.00 1.98
633 634 7.383102 ACCAGTTTTGAGCATTGTAATAGAG 57.617 36.000 0.00 0.00 0.00 2.43
634 635 7.168219 ACCAGTTTTGAGCATTGTAATAGAGA 58.832 34.615 0.00 0.00 0.00 3.10
635 636 7.665559 ACCAGTTTTGAGCATTGTAATAGAGAA 59.334 33.333 0.00 0.00 0.00 2.87
636 637 8.180267 CCAGTTTTGAGCATTGTAATAGAGAAG 58.820 37.037 0.00 0.00 0.00 2.85
637 638 7.695618 CAGTTTTGAGCATTGTAATAGAGAAGC 59.304 37.037 0.00 0.00 0.00 3.86
638 639 5.973651 TTGAGCATTGTAATAGAGAAGCG 57.026 39.130 0.00 0.00 0.00 4.68
639 640 4.371786 TGAGCATTGTAATAGAGAAGCGG 58.628 43.478 0.00 0.00 0.00 5.52
640 641 4.099419 TGAGCATTGTAATAGAGAAGCGGA 59.901 41.667 0.00 0.00 0.00 5.54
641 642 4.372656 AGCATTGTAATAGAGAAGCGGAC 58.627 43.478 0.00 0.00 0.00 4.79
642 643 4.119862 GCATTGTAATAGAGAAGCGGACA 58.880 43.478 0.00 0.00 0.00 4.02
643 644 4.570772 GCATTGTAATAGAGAAGCGGACAA 59.429 41.667 0.00 0.00 0.00 3.18
644 645 5.064707 GCATTGTAATAGAGAAGCGGACAAA 59.935 40.000 0.00 0.00 0.00 2.83
645 646 6.709643 CATTGTAATAGAGAAGCGGACAAAG 58.290 40.000 0.00 0.00 0.00 2.77
646 647 5.401531 TGTAATAGAGAAGCGGACAAAGT 57.598 39.130 0.00 0.00 0.00 2.66
647 648 6.519679 TGTAATAGAGAAGCGGACAAAGTA 57.480 37.500 0.00 0.00 0.00 2.24
648 649 6.561614 TGTAATAGAGAAGCGGACAAAGTAG 58.438 40.000 0.00 0.00 0.00 2.57
649 650 2.371910 AGAGAAGCGGACAAAGTAGC 57.628 50.000 0.00 0.00 0.00 3.58
650 651 1.896465 AGAGAAGCGGACAAAGTAGCT 59.104 47.619 0.00 0.00 42.35 3.32
651 652 2.094442 AGAGAAGCGGACAAAGTAGCTC 60.094 50.000 0.00 0.00 39.25 4.09
652 653 1.618837 AGAAGCGGACAAAGTAGCTCA 59.381 47.619 0.00 0.00 39.25 4.26
653 654 2.234908 AGAAGCGGACAAAGTAGCTCAT 59.765 45.455 0.00 0.00 39.25 2.90
654 655 2.015736 AGCGGACAAAGTAGCTCATG 57.984 50.000 0.00 0.00 34.48 3.07
655 656 1.550524 AGCGGACAAAGTAGCTCATGA 59.449 47.619 0.00 0.00 34.48 3.07
656 657 1.929836 GCGGACAAAGTAGCTCATGAG 59.070 52.381 18.84 18.84 0.00 2.90
671 672 4.507710 CTCATGAGCTTGTTAGGTTAGCA 58.492 43.478 10.38 0.00 37.37 3.49
672 673 4.905429 TCATGAGCTTGTTAGGTTAGCAA 58.095 39.130 0.00 0.00 37.37 3.91
673 674 5.312895 TCATGAGCTTGTTAGGTTAGCAAA 58.687 37.500 0.00 0.00 37.37 3.68
674 675 5.767665 TCATGAGCTTGTTAGGTTAGCAAAA 59.232 36.000 0.00 0.00 37.37 2.44
675 676 5.689383 TGAGCTTGTTAGGTTAGCAAAAG 57.311 39.130 0.00 0.00 37.37 2.27
676 677 4.518970 TGAGCTTGTTAGGTTAGCAAAAGG 59.481 41.667 0.00 0.00 37.37 3.11
677 678 4.470602 AGCTTGTTAGGTTAGCAAAAGGT 58.529 39.130 0.00 0.00 37.37 3.50
678 679 4.893524 AGCTTGTTAGGTTAGCAAAAGGTT 59.106 37.500 0.00 0.00 37.37 3.50
679 680 5.362717 AGCTTGTTAGGTTAGCAAAAGGTTT 59.637 36.000 0.00 0.00 37.37 3.27
680 681 5.690409 GCTTGTTAGGTTAGCAAAAGGTTTC 59.310 40.000 0.00 0.00 35.05 2.78
681 682 6.681865 GCTTGTTAGGTTAGCAAAAGGTTTCA 60.682 38.462 0.00 0.00 35.05 2.69
682 683 6.969993 TGTTAGGTTAGCAAAAGGTTTCAT 57.030 33.333 0.00 0.00 0.00 2.57
683 684 6.744112 TGTTAGGTTAGCAAAAGGTTTCATG 58.256 36.000 0.00 0.00 0.00 3.07
684 685 6.547880 TGTTAGGTTAGCAAAAGGTTTCATGA 59.452 34.615 0.00 0.00 0.00 3.07
685 686 5.453567 AGGTTAGCAAAAGGTTTCATGAC 57.546 39.130 0.00 0.00 0.00 3.06
686 687 5.140454 AGGTTAGCAAAAGGTTTCATGACT 58.860 37.500 0.00 0.00 0.00 3.41
687 688 6.303839 AGGTTAGCAAAAGGTTTCATGACTA 58.696 36.000 0.00 0.00 0.00 2.59
688 689 6.431234 AGGTTAGCAAAAGGTTTCATGACTAG 59.569 38.462 0.00 0.00 0.00 2.57
689 690 6.349363 GGTTAGCAAAAGGTTTCATGACTAGG 60.349 42.308 0.00 0.00 0.00 3.02
690 691 4.082125 AGCAAAAGGTTTCATGACTAGGG 58.918 43.478 0.00 0.00 0.00 3.53
691 692 4.079253 GCAAAAGGTTTCATGACTAGGGA 58.921 43.478 0.00 0.00 0.00 4.20
692 693 4.706962 GCAAAAGGTTTCATGACTAGGGAT 59.293 41.667 0.00 0.00 0.00 3.85
693 694 5.185828 GCAAAAGGTTTCATGACTAGGGATT 59.814 40.000 0.00 0.00 0.00 3.01
694 695 6.624423 CAAAAGGTTTCATGACTAGGGATTG 58.376 40.000 0.00 0.00 0.00 2.67
695 696 5.520748 AAGGTTTCATGACTAGGGATTGT 57.479 39.130 0.00 0.00 0.00 2.71
696 697 6.636454 AAGGTTTCATGACTAGGGATTGTA 57.364 37.500 0.00 0.00 0.00 2.41
697 698 6.831664 AGGTTTCATGACTAGGGATTGTAT 57.168 37.500 0.00 0.00 0.00 2.29
698 699 6.831976 AGGTTTCATGACTAGGGATTGTATC 58.168 40.000 0.00 0.00 0.00 2.24
699 700 5.696724 GGTTTCATGACTAGGGATTGTATCG 59.303 44.000 0.00 0.00 0.00 2.92
700 701 6.462487 GGTTTCATGACTAGGGATTGTATCGA 60.462 42.308 0.00 0.00 0.00 3.59
701 702 5.966742 TCATGACTAGGGATTGTATCGAG 57.033 43.478 0.00 0.00 0.00 4.04
702 703 4.767409 TCATGACTAGGGATTGTATCGAGG 59.233 45.833 0.00 0.00 0.00 4.63
703 704 4.448720 TGACTAGGGATTGTATCGAGGA 57.551 45.455 0.00 0.00 0.00 3.71
704 705 4.399219 TGACTAGGGATTGTATCGAGGAG 58.601 47.826 0.00 0.00 0.00 3.69
705 706 3.158676 ACTAGGGATTGTATCGAGGAGC 58.841 50.000 0.00 0.00 0.00 4.70
706 707 1.343069 AGGGATTGTATCGAGGAGCC 58.657 55.000 0.00 0.00 0.00 4.70
707 708 0.321996 GGGATTGTATCGAGGAGCCC 59.678 60.000 0.00 0.00 0.00 5.19
708 709 1.048601 GGATTGTATCGAGGAGCCCA 58.951 55.000 0.00 0.00 0.00 5.36
709 710 1.625818 GGATTGTATCGAGGAGCCCAT 59.374 52.381 0.00 0.00 0.00 4.00
710 711 2.613977 GGATTGTATCGAGGAGCCCATG 60.614 54.545 0.00 0.00 0.00 3.66
711 712 1.788229 TTGTATCGAGGAGCCCATGA 58.212 50.000 0.00 0.00 0.00 3.07
712 713 1.788229 TGTATCGAGGAGCCCATGAA 58.212 50.000 0.00 0.00 0.00 2.57
713 714 2.115427 TGTATCGAGGAGCCCATGAAA 58.885 47.619 0.00 0.00 0.00 2.69
714 715 2.503765 TGTATCGAGGAGCCCATGAAAA 59.496 45.455 0.00 0.00 0.00 2.29
715 716 3.136443 TGTATCGAGGAGCCCATGAAAAT 59.864 43.478 0.00 0.00 0.00 1.82
716 717 2.806945 TCGAGGAGCCCATGAAAATT 57.193 45.000 0.00 0.00 0.00 1.82
717 718 3.924114 TCGAGGAGCCCATGAAAATTA 57.076 42.857 0.00 0.00 0.00 1.40
718 719 4.437682 TCGAGGAGCCCATGAAAATTAT 57.562 40.909 0.00 0.00 0.00 1.28
719 720 4.792068 TCGAGGAGCCCATGAAAATTATT 58.208 39.130 0.00 0.00 0.00 1.40
720 721 4.580167 TCGAGGAGCCCATGAAAATTATTG 59.420 41.667 0.00 0.00 0.00 1.90
721 722 4.339247 CGAGGAGCCCATGAAAATTATTGT 59.661 41.667 0.00 0.00 0.00 2.71
722 723 5.530915 CGAGGAGCCCATGAAAATTATTGTA 59.469 40.000 0.00 0.00 0.00 2.41
723 724 6.207417 CGAGGAGCCCATGAAAATTATTGTAT 59.793 38.462 0.00 0.00 0.00 2.29
724 725 7.530426 AGGAGCCCATGAAAATTATTGTATC 57.470 36.000 0.00 0.00 0.00 2.24
725 726 7.300658 AGGAGCCCATGAAAATTATTGTATCT 58.699 34.615 0.00 0.00 0.00 1.98
726 727 7.449704 AGGAGCCCATGAAAATTATTGTATCTC 59.550 37.037 0.00 0.00 0.00 2.75
727 728 7.449704 GGAGCCCATGAAAATTATTGTATCTCT 59.550 37.037 0.00 0.00 0.00 3.10
728 729 8.401490 AGCCCATGAAAATTATTGTATCTCTC 57.599 34.615 0.00 0.00 0.00 3.20
729 730 7.449704 AGCCCATGAAAATTATTGTATCTCTCC 59.550 37.037 0.00 0.00 0.00 3.71
730 731 7.449704 GCCCATGAAAATTATTGTATCTCTCCT 59.550 37.037 0.00 0.00 0.00 3.69
731 732 9.359653 CCCATGAAAATTATTGTATCTCTCCTT 57.640 33.333 0.00 0.00 0.00 3.36
931 967 0.888619 GCTTCTGCAAGTTAACCCCC 59.111 55.000 0.88 0.00 39.41 5.40
938 976 2.036387 GCAAGTTAACCCCCTGTTGTT 58.964 47.619 0.88 0.00 37.83 2.83
965 1169 9.295214 CTATATAAGCACGTCAATTCCTCTATG 57.705 37.037 0.00 0.00 0.00 2.23
979 1183 8.526147 CAATTCCTCTATGAACTTCACCAAATT 58.474 33.333 0.00 0.00 0.00 1.82
986 1190 9.739276 TCTATGAACTTCACCAAATTAACTGAT 57.261 29.630 0.00 0.00 0.00 2.90
1004 1208 2.191802 GATCTCACAGTCACAGATGCG 58.808 52.381 0.00 0.00 0.00 4.73
1010 1214 0.671472 CAGTCACAGATGCGGCAGAA 60.671 55.000 9.25 0.00 0.00 3.02
1014 1218 0.671472 CACAGATGCGGCAGAAGACA 60.671 55.000 9.25 0.00 0.00 3.41
1023 1227 1.338105 CGGCAGAAGACAATGTCTCCA 60.338 52.381 17.02 0.00 42.59 3.86
1029 1233 5.410924 CAGAAGACAATGTCTCCATTCGTA 58.589 41.667 17.02 0.00 42.59 3.43
1047 1257 0.529773 TATGCGTCGCCATCCTGTTC 60.530 55.000 15.88 0.00 0.00 3.18
1050 1260 1.519455 CGTCGCCATCCTGTTCCTC 60.519 63.158 0.00 0.00 0.00 3.71
1065 1275 4.803426 CTCGCACTGGTCTCGCCC 62.803 72.222 0.00 0.00 36.04 6.13
1109 1319 1.514873 GCACTAGCAACAATGGCGC 60.515 57.895 0.00 0.00 41.58 6.53
1396 1606 3.284133 TACGATCACCGCGCCAACA 62.284 57.895 0.00 0.00 43.32 3.33
1595 1818 2.924290 GCTACGTCAGGAAAGATGTGTC 59.076 50.000 0.00 0.00 38.19 3.67
2277 8764 1.027357 CACCAGAGCTTTGCAACTGT 58.973 50.000 12.28 0.00 35.07 3.55
2327 8814 5.948742 TGTCTATGGGTATCAATGACACA 57.051 39.130 0.00 0.00 37.03 3.72
2351 8838 4.410099 ACAGAGGAATTCCAATTGAGCAA 58.590 39.130 26.22 0.00 38.89 3.91
2433 8920 3.993736 GTGCCCAATATGGTTTGTTTGTC 59.006 43.478 0.00 0.00 35.17 3.18
2477 8964 4.099419 TCTCACGCTTAAATAGGAGCATCA 59.901 41.667 0.00 0.00 38.81 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.761504 TGCATATGAAATTTCAAACAAGAAGAA 57.238 25.926 23.91 1.93 41.13 2.52
20 21 9.932207 ATGCATATGAAATTTCAAACAAGAAGA 57.068 25.926 23.91 4.00 41.13 2.87
21 22 9.967245 CATGCATATGAAATTTCAAACAAGAAG 57.033 29.630 23.91 9.77 41.13 2.85
22 23 9.491675 ACATGCATATGAAATTTCAAACAAGAA 57.508 25.926 23.91 8.45 41.13 2.52
37 38 9.555727 TCTACGCTACTATATACATGCATATGA 57.444 33.333 6.97 0.00 37.73 2.15
50 51 9.933723 TCAGTACACATATTCTACGCTACTATA 57.066 33.333 0.00 0.00 0.00 1.31
51 52 8.843885 TCAGTACACATATTCTACGCTACTAT 57.156 34.615 0.00 0.00 0.00 2.12
52 53 8.667076 TTCAGTACACATATTCTACGCTACTA 57.333 34.615 0.00 0.00 0.00 1.82
53 54 7.563888 TTCAGTACACATATTCTACGCTACT 57.436 36.000 0.00 0.00 0.00 2.57
54 55 7.914346 AGTTTCAGTACACATATTCTACGCTAC 59.086 37.037 0.00 0.00 0.00 3.58
55 56 7.993101 AGTTTCAGTACACATATTCTACGCTA 58.007 34.615 0.00 0.00 0.00 4.26
56 57 6.864342 AGTTTCAGTACACATATTCTACGCT 58.136 36.000 0.00 0.00 0.00 5.07
57 58 7.274904 TGAAGTTTCAGTACACATATTCTACGC 59.725 37.037 0.00 0.00 32.50 4.42
58 59 8.683550 TGAAGTTTCAGTACACATATTCTACG 57.316 34.615 0.00 0.00 32.50 3.51
61 62 9.725019 TTGATGAAGTTTCAGTACACATATTCT 57.275 29.630 0.00 0.00 41.08 2.40
127 128 9.594478 CCTGGTTTCTTTTTAATTTGTAGTGTT 57.406 29.630 0.00 0.00 0.00 3.32
128 129 8.755028 ACCTGGTTTCTTTTTAATTTGTAGTGT 58.245 29.630 0.00 0.00 0.00 3.55
129 130 9.594478 AACCTGGTTTCTTTTTAATTTGTAGTG 57.406 29.630 6.18 0.00 0.00 2.74
133 134 9.607988 CCTAAACCTGGTTTCTTTTTAATTTGT 57.392 29.630 26.95 2.11 37.01 2.83
134 135 9.051679 CCCTAAACCTGGTTTCTTTTTAATTTG 57.948 33.333 26.95 2.02 37.01 2.32
135 136 8.215050 CCCCTAAACCTGGTTTCTTTTTAATTT 58.785 33.333 26.95 2.76 37.01 1.82
136 137 7.202149 CCCCCTAAACCTGGTTTCTTTTTAATT 60.202 37.037 26.95 3.28 37.01 1.40
137 138 6.271391 CCCCCTAAACCTGGTTTCTTTTTAAT 59.729 38.462 26.95 4.03 37.01 1.40
138 139 5.603395 CCCCCTAAACCTGGTTTCTTTTTAA 59.397 40.000 26.95 8.17 37.01 1.52
139 140 5.149239 CCCCCTAAACCTGGTTTCTTTTTA 58.851 41.667 26.95 8.87 37.01 1.52
140 141 3.971305 CCCCCTAAACCTGGTTTCTTTTT 59.029 43.478 26.95 6.26 37.01 1.94
141 142 3.583228 CCCCCTAAACCTGGTTTCTTTT 58.417 45.455 26.95 7.01 37.01 2.27
142 143 3.254093 CCCCCTAAACCTGGTTTCTTT 57.746 47.619 26.95 7.40 37.01 2.52
143 144 2.992847 CCCCCTAAACCTGGTTTCTT 57.007 50.000 26.95 7.77 37.01 2.52
162 163 1.471287 CGCAGGTTTAGGGTTTTAGCC 59.529 52.381 0.00 0.00 35.59 3.93
163 164 2.913777 CGCAGGTTTAGGGTTTTAGC 57.086 50.000 0.00 0.00 0.00 3.09
178 179 1.144936 CTAAAGGCCTCCTCCGCAG 59.855 63.158 5.23 0.00 30.89 5.18
179 180 1.612442 ACTAAAGGCCTCCTCCGCA 60.612 57.895 5.23 0.00 30.89 5.69
180 181 1.144276 GACTAAAGGCCTCCTCCGC 59.856 63.158 5.23 0.00 30.89 5.54
181 182 1.687297 GGGACTAAAGGCCTCCTCCG 61.687 65.000 5.23 0.00 30.89 4.63
182 183 1.687297 CGGGACTAAAGGCCTCCTCC 61.687 65.000 5.23 7.60 30.89 4.30
183 184 1.687297 CCGGGACTAAAGGCCTCCTC 61.687 65.000 5.23 0.00 30.89 3.71
184 185 1.689582 CCGGGACTAAAGGCCTCCT 60.690 63.158 5.23 0.00 33.87 3.69
185 186 1.559965 AACCGGGACTAAAGGCCTCC 61.560 60.000 5.23 1.56 0.00 4.30
186 187 1.138464 CTAACCGGGACTAAAGGCCTC 59.862 57.143 5.23 0.00 0.00 4.70
187 188 1.201424 CTAACCGGGACTAAAGGCCT 58.799 55.000 6.32 0.00 0.00 5.19
188 189 0.463295 GCTAACCGGGACTAAAGGCC 60.463 60.000 6.32 0.00 0.00 5.19
189 190 0.463295 GGCTAACCGGGACTAAAGGC 60.463 60.000 6.32 1.99 0.00 4.35
190 191 0.906775 TGGCTAACCGGGACTAAAGG 59.093 55.000 6.32 0.00 39.70 3.11
191 192 1.738030 CGTGGCTAACCGGGACTAAAG 60.738 57.143 6.32 0.00 39.70 1.85
192 193 0.247185 CGTGGCTAACCGGGACTAAA 59.753 55.000 6.32 0.00 39.70 1.85
193 194 0.611618 TCGTGGCTAACCGGGACTAA 60.612 55.000 6.32 0.00 39.70 2.24
194 195 1.001020 TCGTGGCTAACCGGGACTA 60.001 57.895 6.32 0.00 39.70 2.59
195 196 2.283388 TCGTGGCTAACCGGGACT 60.283 61.111 6.32 0.00 39.70 3.85
196 197 1.880819 TTCTCGTGGCTAACCGGGAC 61.881 60.000 6.32 0.00 39.70 4.46
197 198 1.607178 TTCTCGTGGCTAACCGGGA 60.607 57.895 6.32 0.00 39.70 5.14
198 199 1.447314 GTTCTCGTGGCTAACCGGG 60.447 63.158 6.32 0.00 39.70 5.73
199 200 1.447314 GGTTCTCGTGGCTAACCGG 60.447 63.158 0.00 0.00 39.70 5.28
200 201 4.180496 GGTTCTCGTGGCTAACCG 57.820 61.111 0.00 0.00 39.70 4.44
201 202 1.447314 CCGGTTCTCGTGGCTAACC 60.447 63.158 0.00 0.00 39.44 2.85
202 203 1.447314 CCCGGTTCTCGTGGCTAAC 60.447 63.158 0.00 0.00 37.11 2.34
203 204 1.607178 TCCCGGTTCTCGTGGCTAA 60.607 57.895 0.00 0.00 37.11 3.09
204 205 2.036098 TCCCGGTTCTCGTGGCTA 59.964 61.111 0.00 0.00 37.11 3.93
205 206 2.776370 TAGTCCCGGTTCTCGTGGCT 62.776 60.000 0.00 0.00 37.11 4.75
206 207 1.880819 TTAGTCCCGGTTCTCGTGGC 61.881 60.000 0.00 0.00 37.11 5.01
207 208 0.604578 TTTAGTCCCGGTTCTCGTGG 59.395 55.000 0.00 0.00 37.11 4.94
208 209 1.403780 CCTTTAGTCCCGGTTCTCGTG 60.404 57.143 0.00 0.00 37.11 4.35
209 210 0.893447 CCTTTAGTCCCGGTTCTCGT 59.107 55.000 0.00 0.00 37.11 4.18
210 211 0.893447 ACCTTTAGTCCCGGTTCTCG 59.107 55.000 0.00 0.00 38.88 4.04
211 212 2.669300 GACCTTTAGTCCCGGTTCTC 57.331 55.000 0.00 0.00 39.84 2.87
220 221 1.521141 GGGCGGAGGACCTTTAGTC 59.479 63.158 0.00 0.00 45.51 2.59
221 222 1.993948 GGGGCGGAGGACCTTTAGT 60.994 63.158 0.00 0.00 43.03 2.24
222 223 2.908796 GGGGCGGAGGACCTTTAG 59.091 66.667 0.00 0.00 43.03 1.85
223 224 3.078836 CGGGGCGGAGGACCTTTA 61.079 66.667 0.00 0.00 43.03 1.85
256 257 3.242897 TAAAGGCCCGTCCACGTGG 62.243 63.158 29.26 29.26 37.29 4.94
257 258 1.740296 CTAAAGGCCCGTCCACGTG 60.740 63.158 9.08 9.08 37.29 4.49
258 259 2.163601 GACTAAAGGCCCGTCCACGT 62.164 60.000 0.00 0.00 37.29 4.49
259 260 1.447314 GACTAAAGGCCCGTCCACG 60.447 63.158 0.00 0.00 37.29 4.94
260 261 1.447314 CGACTAAAGGCCCGTCCAC 60.447 63.158 0.00 0.00 37.29 4.02
261 262 2.975536 CGACTAAAGGCCCGTCCA 59.024 61.111 0.00 0.00 37.29 4.02
262 263 2.510918 GCGACTAAAGGCCCGTCC 60.511 66.667 0.00 0.00 0.00 4.79
263 264 2.884207 CGCGACTAAAGGCCCGTC 60.884 66.667 0.00 0.02 0.00 4.79
264 265 4.446413 CCGCGACTAAAGGCCCGT 62.446 66.667 8.23 0.00 0.00 5.28
265 266 3.945304 AACCGCGACTAAAGGCCCG 62.945 63.158 8.23 0.00 0.00 6.13
266 267 2.046604 AACCGCGACTAAAGGCCC 60.047 61.111 8.23 0.00 0.00 5.80
267 268 2.450345 CGAACCGCGACTAAAGGCC 61.450 63.158 8.23 0.00 44.57 5.19
268 269 0.456653 TACGAACCGCGACTAAAGGC 60.457 55.000 8.23 0.00 44.57 4.35
269 270 1.916000 CTTACGAACCGCGACTAAAGG 59.084 52.381 8.23 0.00 44.57 3.11
270 271 2.844804 CTCTTACGAACCGCGACTAAAG 59.155 50.000 8.23 3.58 44.57 1.85
271 272 2.414559 CCTCTTACGAACCGCGACTAAA 60.415 50.000 8.23 0.00 44.57 1.85
272 273 1.131126 CCTCTTACGAACCGCGACTAA 59.869 52.381 8.23 0.00 44.57 2.24
273 274 0.729116 CCTCTTACGAACCGCGACTA 59.271 55.000 8.23 0.00 44.57 2.59
274 275 1.505353 CCTCTTACGAACCGCGACT 59.495 57.895 8.23 0.00 44.57 4.18
275 276 2.157073 GCCTCTTACGAACCGCGAC 61.157 63.158 8.23 0.00 44.57 5.19
276 277 2.180017 GCCTCTTACGAACCGCGA 59.820 61.111 8.23 0.00 44.57 5.87
278 279 3.551915 GCGCCTCTTACGAACCGC 61.552 66.667 0.00 0.00 33.61 5.68
279 280 3.245315 CGCGCCTCTTACGAACCG 61.245 66.667 0.00 0.00 0.00 4.44
280 281 2.157073 GTCGCGCCTCTTACGAACC 61.157 63.158 0.00 0.00 37.60 3.62
281 282 0.097674 TAGTCGCGCCTCTTACGAAC 59.902 55.000 0.00 0.00 37.60 3.95
282 283 0.804364 TTAGTCGCGCCTCTTACGAA 59.196 50.000 0.00 0.00 37.60 3.85
283 284 0.804364 TTTAGTCGCGCCTCTTACGA 59.196 50.000 0.00 0.00 0.00 3.43
284 285 1.189403 CTTTAGTCGCGCCTCTTACG 58.811 55.000 0.00 0.00 0.00 3.18
285 286 1.557651 CCTTTAGTCGCGCCTCTTAC 58.442 55.000 0.00 0.00 0.00 2.34
286 287 0.458669 CCCTTTAGTCGCGCCTCTTA 59.541 55.000 0.00 0.00 0.00 2.10
287 288 1.218316 CCCTTTAGTCGCGCCTCTT 59.782 57.895 0.00 0.00 0.00 2.85
288 289 2.722201 CCCCTTTAGTCGCGCCTCT 61.722 63.158 0.00 2.63 0.00 3.69
289 290 2.202892 CCCCTTTAGTCGCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
290 291 3.782443 CCCCCTTTAGTCGCGCCT 61.782 66.667 0.00 0.00 0.00 5.52
305 306 2.653953 TATGCGCGACTAAAGCCCCC 62.654 60.000 12.10 0.00 0.00 5.40
306 307 0.602905 ATATGCGCGACTAAAGCCCC 60.603 55.000 12.10 0.00 0.00 5.80
307 308 1.226746 AATATGCGCGACTAAAGCCC 58.773 50.000 12.10 0.00 0.00 5.19
308 309 3.493503 ACTAAATATGCGCGACTAAAGCC 59.506 43.478 12.10 0.00 0.00 4.35
309 310 4.376109 GGACTAAATATGCGCGACTAAAGC 60.376 45.833 12.10 0.00 0.00 3.51
310 311 4.150098 GGGACTAAATATGCGCGACTAAAG 59.850 45.833 12.10 0.00 0.00 1.85
311 312 4.053295 GGGACTAAATATGCGCGACTAAA 58.947 43.478 12.10 0.00 0.00 1.85
312 313 3.645884 GGGACTAAATATGCGCGACTAA 58.354 45.455 12.10 0.00 0.00 2.24
313 314 2.351060 CGGGACTAAATATGCGCGACTA 60.351 50.000 12.10 0.00 38.72 2.59
314 315 1.602165 CGGGACTAAATATGCGCGACT 60.602 52.381 12.10 0.00 38.72 4.18
315 316 0.782384 CGGGACTAAATATGCGCGAC 59.218 55.000 12.10 0.88 38.72 5.19
316 317 0.319211 CCGGGACTAAATATGCGCGA 60.319 55.000 12.10 0.00 38.72 5.87
317 318 0.599204 ACCGGGACTAAATATGCGCG 60.599 55.000 6.32 0.00 36.61 6.86
318 319 1.263217 CAACCGGGACTAAATATGCGC 59.737 52.381 6.32 0.00 0.00 6.09
319 320 1.263217 GCAACCGGGACTAAATATGCG 59.737 52.381 6.32 0.00 0.00 4.73
320 321 2.032924 GTGCAACCGGGACTAAATATGC 59.967 50.000 6.32 2.60 34.56 3.14
321 322 3.275143 TGTGCAACCGGGACTAAATATG 58.725 45.455 6.32 0.00 38.87 1.78
322 323 3.541632 CTGTGCAACCGGGACTAAATAT 58.458 45.455 6.32 0.00 38.87 1.28
323 324 2.937873 GCTGTGCAACCGGGACTAAATA 60.938 50.000 6.32 0.00 38.87 1.40
324 325 1.821216 CTGTGCAACCGGGACTAAAT 58.179 50.000 6.32 0.00 38.87 1.40
325 326 0.887387 GCTGTGCAACCGGGACTAAA 60.887 55.000 6.32 0.00 38.87 1.85
326 327 1.302192 GCTGTGCAACCGGGACTAA 60.302 57.895 6.32 0.00 38.87 2.24
327 328 2.345991 GCTGTGCAACCGGGACTA 59.654 61.111 6.32 0.00 38.87 2.59
328 329 4.643387 GGCTGTGCAACCGGGACT 62.643 66.667 6.32 0.00 38.87 3.85
334 335 0.963355 TTAATCCCGGCTGTGCAACC 60.963 55.000 0.00 0.00 34.36 3.77
335 336 1.102978 ATTAATCCCGGCTGTGCAAC 58.897 50.000 0.00 0.00 37.35 4.17
336 337 1.102154 CATTAATCCCGGCTGTGCAA 58.898 50.000 0.00 0.00 0.00 4.08
337 338 0.751277 CCATTAATCCCGGCTGTGCA 60.751 55.000 0.00 0.00 0.00 4.57
338 339 2.032981 CCATTAATCCCGGCTGTGC 58.967 57.895 0.00 0.00 0.00 4.57
339 340 1.455383 GGCCATTAATCCCGGCTGTG 61.455 60.000 13.35 0.00 45.50 3.66
340 341 1.152756 GGCCATTAATCCCGGCTGT 60.153 57.895 13.35 0.00 45.50 4.40
341 342 0.468029 AAGGCCATTAATCCCGGCTG 60.468 55.000 5.01 0.00 45.50 4.85
342 343 0.261696 AAAGGCCATTAATCCCGGCT 59.738 50.000 5.01 6.20 45.50 5.52
343 344 0.389025 CAAAGGCCATTAATCCCGGC 59.611 55.000 5.01 6.73 45.47 6.13
344 345 0.389025 GCAAAGGCCATTAATCCCGG 59.611 55.000 5.01 0.00 0.00 5.73
345 346 0.030638 CGCAAAGGCCATTAATCCCG 59.969 55.000 5.01 0.00 36.38 5.14
346 347 1.398692 TCGCAAAGGCCATTAATCCC 58.601 50.000 5.01 0.00 36.38 3.85
347 348 2.481276 GGTTCGCAAAGGCCATTAATCC 60.481 50.000 5.01 0.00 36.38 3.01
348 349 2.794631 CGGTTCGCAAAGGCCATTAATC 60.795 50.000 5.01 0.00 36.38 1.75
349 350 1.134175 CGGTTCGCAAAGGCCATTAAT 59.866 47.619 5.01 0.00 36.38 1.40
350 351 0.523966 CGGTTCGCAAAGGCCATTAA 59.476 50.000 5.01 0.00 36.38 1.40
351 352 1.309499 CCGGTTCGCAAAGGCCATTA 61.309 55.000 5.01 0.00 36.38 1.90
352 353 2.635443 CCGGTTCGCAAAGGCCATT 61.635 57.895 5.01 0.00 36.38 3.16
353 354 3.061848 CCGGTTCGCAAAGGCCAT 61.062 61.111 5.01 0.00 36.38 4.40
356 357 2.791501 TAGTCCCGGTTCGCAAAGGC 62.792 60.000 0.00 0.00 0.00 4.35
357 358 0.320946 TTAGTCCCGGTTCGCAAAGG 60.321 55.000 0.00 0.00 0.00 3.11
358 359 1.463444 CTTTAGTCCCGGTTCGCAAAG 59.537 52.381 0.00 5.06 0.00 2.77
359 360 1.515081 CTTTAGTCCCGGTTCGCAAA 58.485 50.000 0.00 0.00 0.00 3.68
360 361 0.320946 CCTTTAGTCCCGGTTCGCAA 60.321 55.000 0.00 0.00 0.00 4.85
361 362 1.294138 CCTTTAGTCCCGGTTCGCA 59.706 57.895 0.00 0.00 0.00 5.10
362 363 2.104859 GCCTTTAGTCCCGGTTCGC 61.105 63.158 0.00 0.00 0.00 4.70
363 364 1.449070 GGCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
364 365 1.197812 TAGGCCTTTAGTCCCGGTTC 58.802 55.000 12.58 0.00 0.00 3.62
365 366 1.889174 ATAGGCCTTTAGTCCCGGTT 58.111 50.000 12.58 0.00 0.00 4.44
366 367 1.767088 GAATAGGCCTTTAGTCCCGGT 59.233 52.381 12.58 0.00 0.00 5.28
367 368 2.037381 GAGAATAGGCCTTTAGTCCCGG 59.963 54.545 12.58 0.00 0.00 5.73
368 369 2.966516 AGAGAATAGGCCTTTAGTCCCG 59.033 50.000 12.58 0.00 0.00 5.14
369 370 4.283978 GGTAGAGAATAGGCCTTTAGTCCC 59.716 50.000 12.58 0.00 0.00 4.46
370 371 4.900054 TGGTAGAGAATAGGCCTTTAGTCC 59.100 45.833 12.58 4.77 0.00 3.85
371 372 5.599242 ACTGGTAGAGAATAGGCCTTTAGTC 59.401 44.000 12.58 1.74 0.00 2.59
372 373 5.364157 CACTGGTAGAGAATAGGCCTTTAGT 59.636 44.000 12.58 0.00 0.00 2.24
373 374 5.364157 ACACTGGTAGAGAATAGGCCTTTAG 59.636 44.000 12.58 0.00 0.00 1.85
374 375 5.278061 ACACTGGTAGAGAATAGGCCTTTA 58.722 41.667 12.58 0.00 0.00 1.85
375 376 4.104831 ACACTGGTAGAGAATAGGCCTTT 58.895 43.478 12.58 0.00 0.00 3.11
376 377 3.725634 ACACTGGTAGAGAATAGGCCTT 58.274 45.455 12.58 0.00 0.00 4.35
377 378 3.406512 ACACTGGTAGAGAATAGGCCT 57.593 47.619 11.78 11.78 0.00 5.19
388 389 4.820897 TCATGCAGTTTCTACACTGGTAG 58.179 43.478 3.15 0.00 46.85 3.18
389 390 4.882842 TCATGCAGTTTCTACACTGGTA 57.117 40.909 3.15 0.00 43.94 3.25
390 391 3.769739 TCATGCAGTTTCTACACTGGT 57.230 42.857 3.15 0.00 43.94 4.00
391 392 3.308053 CGATCATGCAGTTTCTACACTGG 59.692 47.826 3.15 0.00 43.94 4.00
392 393 4.176271 TCGATCATGCAGTTTCTACACTG 58.824 43.478 0.00 0.00 46.15 3.66
393 394 4.456280 TCGATCATGCAGTTTCTACACT 57.544 40.909 0.00 0.00 0.00 3.55
394 395 5.063944 ACAATCGATCATGCAGTTTCTACAC 59.936 40.000 0.00 0.00 0.00 2.90
395 396 5.178061 ACAATCGATCATGCAGTTTCTACA 58.822 37.500 0.00 0.00 0.00 2.74
396 397 5.725110 ACAATCGATCATGCAGTTTCTAC 57.275 39.130 0.00 0.00 0.00 2.59
397 398 5.447683 GCAACAATCGATCATGCAGTTTCTA 60.448 40.000 19.25 0.00 37.00 2.10
398 399 4.673580 GCAACAATCGATCATGCAGTTTCT 60.674 41.667 19.25 0.00 37.00 2.52
399 400 3.545078 GCAACAATCGATCATGCAGTTTC 59.455 43.478 19.25 2.90 37.00 2.78
400 401 3.504863 GCAACAATCGATCATGCAGTTT 58.495 40.909 19.25 0.00 37.00 2.66
401 402 2.476686 CGCAACAATCGATCATGCAGTT 60.477 45.455 22.07 9.41 36.84 3.16
402 403 1.063027 CGCAACAATCGATCATGCAGT 59.937 47.619 22.07 4.89 36.84 4.40
403 404 1.738432 CGCAACAATCGATCATGCAG 58.262 50.000 22.07 14.35 36.84 4.41
404 405 0.248175 GCGCAACAATCGATCATGCA 60.248 50.000 22.07 0.00 36.84 3.96
405 406 1.257586 CGCGCAACAATCGATCATGC 61.258 55.000 8.75 15.96 0.00 4.06
406 407 0.655337 CCGCGCAACAATCGATCATG 60.655 55.000 8.75 0.00 0.00 3.07
407 408 0.809636 TCCGCGCAACAATCGATCAT 60.810 50.000 8.75 0.00 0.00 2.45
408 409 0.809636 ATCCGCGCAACAATCGATCA 60.810 50.000 8.75 0.00 0.00 2.92
409 410 0.383491 CATCCGCGCAACAATCGATC 60.383 55.000 8.75 0.00 0.00 3.69
410 411 1.643292 CATCCGCGCAACAATCGAT 59.357 52.632 8.75 0.00 0.00 3.59
411 412 3.088914 CATCCGCGCAACAATCGA 58.911 55.556 8.75 0.00 0.00 3.59
412 413 2.648724 GCATCCGCGCAACAATCG 60.649 61.111 8.75 0.00 0.00 3.34
413 414 1.297893 GAGCATCCGCGCAACAATC 60.298 57.895 8.75 0.00 45.49 2.67
414 415 1.746615 AGAGCATCCGCGCAACAAT 60.747 52.632 8.75 0.00 45.49 2.71
415 416 2.358615 AGAGCATCCGCGCAACAA 60.359 55.556 8.75 0.00 45.49 2.83
416 417 3.120385 CAGAGCATCCGCGCAACA 61.120 61.111 8.75 0.00 45.49 3.33
417 418 2.815211 TCAGAGCATCCGCGCAAC 60.815 61.111 8.75 0.00 45.49 4.17
418 419 2.815211 GTCAGAGCATCCGCGCAA 60.815 61.111 8.75 0.00 45.49 4.85
419 420 3.995219 CTGTCAGAGCATCCGCGCA 62.995 63.158 8.75 0.00 45.49 6.09
420 421 3.260483 CTGTCAGAGCATCCGCGC 61.260 66.667 0.00 0.00 45.49 6.86
428 429 3.184683 CGCTTCCGCTGTCAGAGC 61.185 66.667 3.32 2.51 45.20 4.09
429 430 0.109272 TAACGCTTCCGCTGTCAGAG 60.109 55.000 3.32 0.00 38.22 3.35
430 431 0.109272 CTAACGCTTCCGCTGTCAGA 60.109 55.000 3.32 0.00 38.22 3.27
431 432 1.687494 GCTAACGCTTCCGCTGTCAG 61.687 60.000 0.00 0.00 38.22 3.51
432 433 1.736645 GCTAACGCTTCCGCTGTCA 60.737 57.895 0.00 0.00 38.22 3.58
433 434 1.084370 ATGCTAACGCTTCCGCTGTC 61.084 55.000 0.00 0.00 38.22 3.51
434 435 0.673644 AATGCTAACGCTTCCGCTGT 60.674 50.000 0.00 0.00 38.22 4.40
435 436 0.447801 AAATGCTAACGCTTCCGCTG 59.552 50.000 0.00 0.00 38.22 5.18
436 437 1.933853 CTAAATGCTAACGCTTCCGCT 59.066 47.619 0.00 0.00 38.22 5.52
437 438 1.003866 CCTAAATGCTAACGCTTCCGC 60.004 52.381 0.00 0.00 38.22 5.54
438 439 2.277084 ACCTAAATGCTAACGCTTCCG 58.723 47.619 0.00 0.00 41.14 4.30
439 440 4.412207 CAAACCTAAATGCTAACGCTTCC 58.588 43.478 0.00 0.00 36.97 3.46
440 441 4.412207 CCAAACCTAAATGCTAACGCTTC 58.588 43.478 0.00 0.00 36.97 3.86
441 442 3.366985 GCCAAACCTAAATGCTAACGCTT 60.367 43.478 0.00 0.00 36.97 4.68
442 443 2.163613 GCCAAACCTAAATGCTAACGCT 59.836 45.455 0.00 0.00 36.97 5.07
443 444 2.526077 GCCAAACCTAAATGCTAACGC 58.474 47.619 0.00 0.00 0.00 4.84
444 445 3.145212 GGCCAAACCTAAATGCTAACG 57.855 47.619 0.00 0.00 34.51 3.18
455 456 3.759452 TGTACCAGTACTAGGCCAAACCT 60.759 47.826 5.01 0.00 42.01 3.50
456 457 2.568509 TGTACCAGTACTAGGCCAAACC 59.431 50.000 5.01 0.00 37.00 3.27
457 458 3.967332 TGTACCAGTACTAGGCCAAAC 57.033 47.619 5.01 0.00 37.00 2.93
458 459 4.978438 TTTGTACCAGTACTAGGCCAAA 57.022 40.909 5.01 16.73 37.00 3.28
459 460 4.594062 TCTTTTGTACCAGTACTAGGCCAA 59.406 41.667 5.01 10.32 37.00 4.52
460 461 4.020839 GTCTTTTGTACCAGTACTAGGCCA 60.021 45.833 5.01 5.98 37.00 5.36
461 462 4.502016 GTCTTTTGTACCAGTACTAGGCC 58.498 47.826 9.24 0.00 37.00 5.19
462 463 4.171754 CGTCTTTTGTACCAGTACTAGGC 58.828 47.826 9.24 5.12 37.00 3.93
463 464 4.381292 CCCGTCTTTTGTACCAGTACTAGG 60.381 50.000 9.24 2.26 37.00 3.02
464 465 4.219288 ACCCGTCTTTTGTACCAGTACTAG 59.781 45.833 9.24 0.00 37.00 2.57
465 466 4.151883 ACCCGTCTTTTGTACCAGTACTA 58.848 43.478 9.24 0.00 37.00 1.82
466 467 2.967887 ACCCGTCTTTTGTACCAGTACT 59.032 45.455 9.24 0.00 37.00 2.73
467 468 3.391506 ACCCGTCTTTTGTACCAGTAC 57.608 47.619 0.86 0.86 36.63 2.73
468 469 3.731089 CAACCCGTCTTTTGTACCAGTA 58.269 45.455 0.00 0.00 0.00 2.74
469 470 2.567985 CAACCCGTCTTTTGTACCAGT 58.432 47.619 0.00 0.00 0.00 4.00
470 471 1.265905 GCAACCCGTCTTTTGTACCAG 59.734 52.381 0.00 0.00 0.00 4.00
471 472 1.310904 GCAACCCGTCTTTTGTACCA 58.689 50.000 0.00 0.00 0.00 3.25
472 473 1.310904 TGCAACCCGTCTTTTGTACC 58.689 50.000 0.00 0.00 0.00 3.34
473 474 3.561503 GATTGCAACCCGTCTTTTGTAC 58.438 45.455 0.00 0.00 0.00 2.90
474 475 2.224549 CGATTGCAACCCGTCTTTTGTA 59.775 45.455 0.00 0.00 0.00 2.41
475 476 1.001815 CGATTGCAACCCGTCTTTTGT 60.002 47.619 0.00 0.00 0.00 2.83
476 477 1.001815 ACGATTGCAACCCGTCTTTTG 60.002 47.619 19.15 1.21 29.82 2.44
477 478 1.265905 GACGATTGCAACCCGTCTTTT 59.734 47.619 31.85 13.17 46.24 2.27
478 479 0.872388 GACGATTGCAACCCGTCTTT 59.128 50.000 31.85 13.45 46.24 2.52
479 480 2.540145 GACGATTGCAACCCGTCTT 58.460 52.632 31.85 11.43 46.24 3.01
480 481 4.278956 GACGATTGCAACCCGTCT 57.721 55.556 31.85 14.28 46.24 4.18
482 483 0.036388 ATGAGACGATTGCAACCCGT 60.036 50.000 23.23 23.23 39.41 5.28
483 484 1.086696 AATGAGACGATTGCAACCCG 58.913 50.000 18.02 18.02 0.00 5.28
484 485 4.900635 AATAATGAGACGATTGCAACCC 57.099 40.909 0.00 0.00 0.00 4.11
485 486 8.345565 AGAATTAATAATGAGACGATTGCAACC 58.654 33.333 0.00 0.00 0.00 3.77
486 487 9.162793 CAGAATTAATAATGAGACGATTGCAAC 57.837 33.333 0.00 0.00 0.00 4.17
487 488 9.108284 TCAGAATTAATAATGAGACGATTGCAA 57.892 29.630 0.00 0.00 0.00 4.08
488 489 8.661352 TCAGAATTAATAATGAGACGATTGCA 57.339 30.769 0.00 0.00 0.00 4.08
511 512 9.605955 CGTTCTTCATTGTGTTTTATGTTATCA 57.394 29.630 0.00 0.00 0.00 2.15
512 513 9.061610 CCGTTCTTCATTGTGTTTTATGTTATC 57.938 33.333 0.00 0.00 0.00 1.75
513 514 8.788806 TCCGTTCTTCATTGTGTTTTATGTTAT 58.211 29.630 0.00 0.00 0.00 1.89
514 515 8.155821 TCCGTTCTTCATTGTGTTTTATGTTA 57.844 30.769 0.00 0.00 0.00 2.41
515 516 7.033530 TCCGTTCTTCATTGTGTTTTATGTT 57.966 32.000 0.00 0.00 0.00 2.71
516 517 6.293955 CCTCCGTTCTTCATTGTGTTTTATGT 60.294 38.462 0.00 0.00 0.00 2.29
517 518 6.086222 CCTCCGTTCTTCATTGTGTTTTATG 58.914 40.000 0.00 0.00 0.00 1.90
518 519 5.768164 ACCTCCGTTCTTCATTGTGTTTTAT 59.232 36.000 0.00 0.00 0.00 1.40
519 520 5.127491 ACCTCCGTTCTTCATTGTGTTTTA 58.873 37.500 0.00 0.00 0.00 1.52
520 521 3.951680 ACCTCCGTTCTTCATTGTGTTTT 59.048 39.130 0.00 0.00 0.00 2.43
521 522 3.551846 ACCTCCGTTCTTCATTGTGTTT 58.448 40.909 0.00 0.00 0.00 2.83
522 523 3.139077 GACCTCCGTTCTTCATTGTGTT 58.861 45.455 0.00 0.00 0.00 3.32
523 524 2.767505 GACCTCCGTTCTTCATTGTGT 58.232 47.619 0.00 0.00 0.00 3.72
524 525 1.726791 CGACCTCCGTTCTTCATTGTG 59.273 52.381 0.00 0.00 0.00 3.33
525 526 1.939838 GCGACCTCCGTTCTTCATTGT 60.940 52.381 0.00 0.00 41.15 2.71
526 527 0.721718 GCGACCTCCGTTCTTCATTG 59.278 55.000 0.00 0.00 41.15 2.82
527 528 0.320374 TGCGACCTCCGTTCTTCATT 59.680 50.000 0.00 0.00 41.15 2.57
528 529 0.389948 GTGCGACCTCCGTTCTTCAT 60.390 55.000 0.00 0.00 41.15 2.57
529 530 1.006571 GTGCGACCTCCGTTCTTCA 60.007 57.895 0.00 0.00 41.15 3.02
530 531 1.009389 CAGTGCGACCTCCGTTCTTC 61.009 60.000 0.00 0.00 41.15 2.87
531 532 1.006102 CAGTGCGACCTCCGTTCTT 60.006 57.895 0.00 0.00 41.15 2.52
532 533 2.651361 CAGTGCGACCTCCGTTCT 59.349 61.111 0.00 0.00 41.15 3.01
533 534 3.112709 GCAGTGCGACCTCCGTTC 61.113 66.667 0.00 0.00 41.15 3.95
534 535 3.865929 CTGCAGTGCGACCTCCGTT 62.866 63.158 11.20 0.00 41.15 4.44
535 536 4.363990 CTGCAGTGCGACCTCCGT 62.364 66.667 11.20 0.00 41.15 4.69
537 538 3.655810 CTCCTGCAGTGCGACCTCC 62.656 68.421 13.81 0.00 0.00 4.30
538 539 2.125753 CTCCTGCAGTGCGACCTC 60.126 66.667 13.81 0.00 0.00 3.85
539 540 4.385405 GCTCCTGCAGTGCGACCT 62.385 66.667 13.81 0.00 39.41 3.85
551 552 2.196997 TAATTGCAGCCACCGCTCCT 62.197 55.000 0.00 0.00 43.95 3.69
552 553 1.103398 ATAATTGCAGCCACCGCTCC 61.103 55.000 0.00 0.00 43.95 4.70
553 554 0.740737 AATAATTGCAGCCACCGCTC 59.259 50.000 0.00 0.00 43.95 5.03
555 556 0.455410 TCAATAATTGCAGCCACCGC 59.545 50.000 0.00 0.00 0.00 5.68
556 557 1.066002 CCTCAATAATTGCAGCCACCG 59.934 52.381 0.00 0.00 0.00 4.94
557 558 2.378038 TCCTCAATAATTGCAGCCACC 58.622 47.619 0.00 0.00 0.00 4.61
558 559 4.365723 CAATCCTCAATAATTGCAGCCAC 58.634 43.478 0.00 0.00 0.00 5.01
559 560 4.659111 CAATCCTCAATAATTGCAGCCA 57.341 40.909 0.00 0.00 0.00 4.75
586 587 9.567776 TGGTAAGAGAAAAATCACAAGTCATAA 57.432 29.630 0.00 0.00 0.00 1.90
587 588 9.219603 CTGGTAAGAGAAAAATCACAAGTCATA 57.780 33.333 0.00 0.00 0.00 2.15
588 589 7.721399 ACTGGTAAGAGAAAAATCACAAGTCAT 59.279 33.333 0.00 0.00 0.00 3.06
589 590 7.054124 ACTGGTAAGAGAAAAATCACAAGTCA 58.946 34.615 0.00 0.00 0.00 3.41
590 591 7.497925 ACTGGTAAGAGAAAAATCACAAGTC 57.502 36.000 0.00 0.00 0.00 3.01
591 592 7.881775 AACTGGTAAGAGAAAAATCACAAGT 57.118 32.000 0.00 0.00 0.00 3.16
592 593 9.023967 CAAAACTGGTAAGAGAAAAATCACAAG 57.976 33.333 0.00 0.00 0.00 3.16
593 594 8.744652 TCAAAACTGGTAAGAGAAAAATCACAA 58.255 29.630 0.00 0.00 0.00 3.33
594 595 8.287439 TCAAAACTGGTAAGAGAAAAATCACA 57.713 30.769 0.00 0.00 0.00 3.58
595 596 7.379797 GCTCAAAACTGGTAAGAGAAAAATCAC 59.620 37.037 0.00 0.00 0.00 3.06
596 597 7.068103 TGCTCAAAACTGGTAAGAGAAAAATCA 59.932 33.333 0.00 0.00 0.00 2.57
597 598 7.425606 TGCTCAAAACTGGTAAGAGAAAAATC 58.574 34.615 0.00 0.00 0.00 2.17
598 599 7.346751 TGCTCAAAACTGGTAAGAGAAAAAT 57.653 32.000 0.00 0.00 0.00 1.82
599 600 6.767524 TGCTCAAAACTGGTAAGAGAAAAA 57.232 33.333 0.00 0.00 0.00 1.94
600 601 6.959639 ATGCTCAAAACTGGTAAGAGAAAA 57.040 33.333 0.00 0.00 0.00 2.29
601 602 6.321181 ACAATGCTCAAAACTGGTAAGAGAAA 59.679 34.615 0.00 0.00 0.00 2.52
602 603 5.827797 ACAATGCTCAAAACTGGTAAGAGAA 59.172 36.000 0.00 0.00 0.00 2.87
603 604 5.376625 ACAATGCTCAAAACTGGTAAGAGA 58.623 37.500 0.00 0.00 0.00 3.10
604 605 5.695851 ACAATGCTCAAAACTGGTAAGAG 57.304 39.130 0.00 0.00 0.00 2.85
605 606 7.759489 ATTACAATGCTCAAAACTGGTAAGA 57.241 32.000 0.00 0.00 0.00 2.10
606 607 8.946085 TCTATTACAATGCTCAAAACTGGTAAG 58.054 33.333 0.00 0.00 0.00 2.34
607 608 8.856153 TCTATTACAATGCTCAAAACTGGTAA 57.144 30.769 0.00 0.00 0.00 2.85
608 609 8.318412 TCTCTATTACAATGCTCAAAACTGGTA 58.682 33.333 0.00 0.00 0.00 3.25
609 610 7.168219 TCTCTATTACAATGCTCAAAACTGGT 58.832 34.615 0.00 0.00 0.00 4.00
610 611 7.615582 TCTCTATTACAATGCTCAAAACTGG 57.384 36.000 0.00 0.00 0.00 4.00
611 612 7.695618 GCTTCTCTATTACAATGCTCAAAACTG 59.304 37.037 0.00 0.00 0.00 3.16
612 613 7.413438 CGCTTCTCTATTACAATGCTCAAAACT 60.413 37.037 0.00 0.00 0.00 2.66
613 614 6.684555 CGCTTCTCTATTACAATGCTCAAAAC 59.315 38.462 0.00 0.00 0.00 2.43
614 615 6.183360 CCGCTTCTCTATTACAATGCTCAAAA 60.183 38.462 0.00 0.00 0.00 2.44
615 616 5.294306 CCGCTTCTCTATTACAATGCTCAAA 59.706 40.000 0.00 0.00 0.00 2.69
616 617 4.811024 CCGCTTCTCTATTACAATGCTCAA 59.189 41.667 0.00 0.00 0.00 3.02
617 618 4.099419 TCCGCTTCTCTATTACAATGCTCA 59.901 41.667 0.00 0.00 0.00 4.26
618 619 4.446051 GTCCGCTTCTCTATTACAATGCTC 59.554 45.833 0.00 0.00 0.00 4.26
619 620 4.141937 TGTCCGCTTCTCTATTACAATGCT 60.142 41.667 0.00 0.00 0.00 3.79
620 621 4.119862 TGTCCGCTTCTCTATTACAATGC 58.880 43.478 0.00 0.00 0.00 3.56
621 622 6.313905 ACTTTGTCCGCTTCTCTATTACAATG 59.686 38.462 0.00 0.00 0.00 2.82
622 623 6.407202 ACTTTGTCCGCTTCTCTATTACAAT 58.593 36.000 0.00 0.00 0.00 2.71
623 624 5.790593 ACTTTGTCCGCTTCTCTATTACAA 58.209 37.500 0.00 0.00 0.00 2.41
624 625 5.401531 ACTTTGTCCGCTTCTCTATTACA 57.598 39.130 0.00 0.00 0.00 2.41
625 626 5.459434 GCTACTTTGTCCGCTTCTCTATTAC 59.541 44.000 0.00 0.00 0.00 1.89
626 627 5.360144 AGCTACTTTGTCCGCTTCTCTATTA 59.640 40.000 0.00 0.00 0.00 0.98
627 628 4.160626 AGCTACTTTGTCCGCTTCTCTATT 59.839 41.667 0.00 0.00 0.00 1.73
628 629 3.702045 AGCTACTTTGTCCGCTTCTCTAT 59.298 43.478 0.00 0.00 0.00 1.98
629 630 3.090037 AGCTACTTTGTCCGCTTCTCTA 58.910 45.455 0.00 0.00 0.00 2.43
630 631 1.896465 AGCTACTTTGTCCGCTTCTCT 59.104 47.619 0.00 0.00 0.00 3.10
631 632 2.263945 GAGCTACTTTGTCCGCTTCTC 58.736 52.381 0.00 0.00 31.96 2.87
632 633 1.618837 TGAGCTACTTTGTCCGCTTCT 59.381 47.619 0.00 0.00 31.96 2.85
633 634 2.080286 TGAGCTACTTTGTCCGCTTC 57.920 50.000 0.00 0.00 31.96 3.86
634 635 2.028112 TCATGAGCTACTTTGTCCGCTT 60.028 45.455 0.00 0.00 31.96 4.68
635 636 1.550524 TCATGAGCTACTTTGTCCGCT 59.449 47.619 0.00 0.00 35.03 5.52
636 637 1.929836 CTCATGAGCTACTTTGTCCGC 59.070 52.381 10.38 0.00 0.00 5.54
649 650 4.507710 TGCTAACCTAACAAGCTCATGAG 58.492 43.478 18.84 18.84 37.16 2.90
650 651 4.551702 TGCTAACCTAACAAGCTCATGA 57.448 40.909 0.00 0.00 37.16 3.07
651 652 5.627499 TTTGCTAACCTAACAAGCTCATG 57.373 39.130 0.00 0.00 37.16 3.07
652 653 5.183904 CCTTTTGCTAACCTAACAAGCTCAT 59.816 40.000 0.00 0.00 37.16 2.90
653 654 4.518970 CCTTTTGCTAACCTAACAAGCTCA 59.481 41.667 0.00 0.00 37.16 4.26
654 655 4.519350 ACCTTTTGCTAACCTAACAAGCTC 59.481 41.667 0.00 0.00 37.16 4.09
655 656 4.470602 ACCTTTTGCTAACCTAACAAGCT 58.529 39.130 0.00 0.00 37.16 3.74
656 657 4.848562 ACCTTTTGCTAACCTAACAAGC 57.151 40.909 0.00 0.00 36.77 4.01
657 658 6.801575 TGAAACCTTTTGCTAACCTAACAAG 58.198 36.000 0.00 0.00 0.00 3.16
658 659 6.777213 TGAAACCTTTTGCTAACCTAACAA 57.223 33.333 0.00 0.00 0.00 2.83
659 660 6.547880 TCATGAAACCTTTTGCTAACCTAACA 59.452 34.615 0.00 0.00 0.00 2.41
660 661 6.861572 GTCATGAAACCTTTTGCTAACCTAAC 59.138 38.462 0.00 0.00 0.00 2.34
661 662 6.775629 AGTCATGAAACCTTTTGCTAACCTAA 59.224 34.615 0.00 0.00 0.00 2.69
662 663 6.303839 AGTCATGAAACCTTTTGCTAACCTA 58.696 36.000 0.00 0.00 0.00 3.08
663 664 5.140454 AGTCATGAAACCTTTTGCTAACCT 58.860 37.500 0.00 0.00 0.00 3.50
664 665 5.453567 AGTCATGAAACCTTTTGCTAACC 57.546 39.130 0.00 0.00 0.00 2.85
665 666 6.349363 CCCTAGTCATGAAACCTTTTGCTAAC 60.349 42.308 0.00 0.00 0.00 2.34
666 667 5.710099 CCCTAGTCATGAAACCTTTTGCTAA 59.290 40.000 0.00 0.00 0.00 3.09
667 668 5.013704 TCCCTAGTCATGAAACCTTTTGCTA 59.986 40.000 0.00 0.00 0.00 3.49
668 669 4.082125 CCCTAGTCATGAAACCTTTTGCT 58.918 43.478 0.00 0.00 0.00 3.91
669 670 4.079253 TCCCTAGTCATGAAACCTTTTGC 58.921 43.478 0.00 0.00 0.00 3.68
670 671 6.209391 ACAATCCCTAGTCATGAAACCTTTTG 59.791 38.462 0.00 0.00 0.00 2.44
671 672 6.314917 ACAATCCCTAGTCATGAAACCTTTT 58.685 36.000 0.00 0.00 0.00 2.27
672 673 5.892348 ACAATCCCTAGTCATGAAACCTTT 58.108 37.500 0.00 0.00 0.00 3.11
673 674 5.520748 ACAATCCCTAGTCATGAAACCTT 57.479 39.130 0.00 0.00 0.00 3.50
674 675 6.463049 CGATACAATCCCTAGTCATGAAACCT 60.463 42.308 0.00 0.00 0.00 3.50
675 676 5.696724 CGATACAATCCCTAGTCATGAAACC 59.303 44.000 0.00 0.00 0.00 3.27
676 677 6.513180 TCGATACAATCCCTAGTCATGAAAC 58.487 40.000 0.00 0.00 0.00 2.78
677 678 6.239317 CCTCGATACAATCCCTAGTCATGAAA 60.239 42.308 0.00 0.00 0.00 2.69
678 679 5.243954 CCTCGATACAATCCCTAGTCATGAA 59.756 44.000 0.00 0.00 0.00 2.57
679 680 4.767409 CCTCGATACAATCCCTAGTCATGA 59.233 45.833 0.00 0.00 0.00 3.07
680 681 4.767409 TCCTCGATACAATCCCTAGTCATG 59.233 45.833 0.00 0.00 0.00 3.07
681 682 4.999310 TCCTCGATACAATCCCTAGTCAT 58.001 43.478 0.00 0.00 0.00 3.06
682 683 4.399219 CTCCTCGATACAATCCCTAGTCA 58.601 47.826 0.00 0.00 0.00 3.41
683 684 3.191791 GCTCCTCGATACAATCCCTAGTC 59.808 52.174 0.00 0.00 0.00 2.59
684 685 3.158676 GCTCCTCGATACAATCCCTAGT 58.841 50.000 0.00 0.00 0.00 2.57
685 686 2.494073 GGCTCCTCGATACAATCCCTAG 59.506 54.545 0.00 0.00 0.00 3.02
686 687 2.526432 GGCTCCTCGATACAATCCCTA 58.474 52.381 0.00 0.00 0.00 3.53
687 688 1.343069 GGCTCCTCGATACAATCCCT 58.657 55.000 0.00 0.00 0.00 4.20
688 689 0.321996 GGGCTCCTCGATACAATCCC 59.678 60.000 0.00 0.00 0.00 3.85
689 690 1.048601 TGGGCTCCTCGATACAATCC 58.951 55.000 0.00 0.00 0.00 3.01
690 691 2.300152 TCATGGGCTCCTCGATACAATC 59.700 50.000 0.00 0.00 0.00 2.67
691 692 2.329267 TCATGGGCTCCTCGATACAAT 58.671 47.619 0.00 0.00 0.00 2.71
692 693 1.788229 TCATGGGCTCCTCGATACAA 58.212 50.000 0.00 0.00 0.00 2.41
693 694 1.788229 TTCATGGGCTCCTCGATACA 58.212 50.000 0.00 0.00 0.00 2.29
694 695 2.910688 TTTCATGGGCTCCTCGATAC 57.089 50.000 0.00 0.00 0.00 2.24
695 696 4.437682 AATTTTCATGGGCTCCTCGATA 57.562 40.909 0.00 0.00 0.00 2.92
696 697 3.303351 AATTTTCATGGGCTCCTCGAT 57.697 42.857 0.00 0.00 0.00 3.59
697 698 2.806945 AATTTTCATGGGCTCCTCGA 57.193 45.000 0.00 0.00 0.00 4.04
698 699 4.339247 ACAATAATTTTCATGGGCTCCTCG 59.661 41.667 0.00 0.00 0.00 4.63
699 700 5.859205 ACAATAATTTTCATGGGCTCCTC 57.141 39.130 0.00 0.00 0.00 3.71
700 701 7.300658 AGATACAATAATTTTCATGGGCTCCT 58.699 34.615 0.00 0.00 0.00 3.69
701 702 7.449704 AGAGATACAATAATTTTCATGGGCTCC 59.550 37.037 0.00 0.00 0.00 4.70
702 703 8.401490 AGAGATACAATAATTTTCATGGGCTC 57.599 34.615 0.00 0.00 0.00 4.70
703 704 7.449704 GGAGAGATACAATAATTTTCATGGGCT 59.550 37.037 0.00 0.00 0.00 5.19
704 705 7.449704 AGGAGAGATACAATAATTTTCATGGGC 59.550 37.037 0.00 0.00 0.00 5.36
705 706 8.930846 AGGAGAGATACAATAATTTTCATGGG 57.069 34.615 0.00 0.00 0.00 4.00
788 789 9.449550 CGTTTTGCATGTATACATATGACATTT 57.550 29.630 17.86 0.00 34.26 2.32
789 790 8.075574 CCGTTTTGCATGTATACATATGACATT 58.924 33.333 17.86 0.00 34.26 2.71
790 791 7.584108 CCGTTTTGCATGTATACATATGACAT 58.416 34.615 17.86 6.21 34.26 3.06
791 792 6.512578 GCCGTTTTGCATGTATACATATGACA 60.513 38.462 17.86 11.04 34.26 3.58
792 793 5.851177 GCCGTTTTGCATGTATACATATGAC 59.149 40.000 17.86 11.10 34.26 3.06
793 794 5.762711 AGCCGTTTTGCATGTATACATATGA 59.237 36.000 17.86 4.36 34.26 2.15
794 795 6.000891 AGCCGTTTTGCATGTATACATATG 57.999 37.500 17.86 9.84 34.26 1.78
795 796 7.308348 GGTTAGCCGTTTTGCATGTATACATAT 60.308 37.037 17.86 0.00 34.26 1.78
796 797 6.017770 GGTTAGCCGTTTTGCATGTATACATA 60.018 38.462 17.86 1.00 34.26 2.29
797 798 5.220970 GGTTAGCCGTTTTGCATGTATACAT 60.221 40.000 12.75 12.75 36.96 2.29
798 799 4.095185 GGTTAGCCGTTTTGCATGTATACA 59.905 41.667 8.27 8.27 0.00 2.29
799 800 4.334481 AGGTTAGCCGTTTTGCATGTATAC 59.666 41.667 0.00 0.00 40.50 1.47
800 801 4.334203 CAGGTTAGCCGTTTTGCATGTATA 59.666 41.667 0.00 0.00 40.50 1.47
801 802 3.128589 CAGGTTAGCCGTTTTGCATGTAT 59.871 43.478 0.00 0.00 40.50 2.29
931 967 7.520119 TTGACGTGCTTATATAGAACAACAG 57.480 36.000 0.00 0.00 31.02 3.16
938 976 7.526142 AGAGGAATTGACGTGCTTATATAGA 57.474 36.000 0.00 0.00 0.00 1.98
965 1169 8.017946 GTGAGATCAGTTAATTTGGTGAAGTTC 58.982 37.037 0.00 0.00 0.00 3.01
979 1183 5.623141 GCATCTGTGACTGTGAGATCAGTTA 60.623 44.000 0.00 0.00 46.81 2.24
986 1190 0.244721 CCGCATCTGTGACTGTGAGA 59.755 55.000 0.00 0.00 0.00 3.27
1004 1208 2.479566 TGGAGACATTGTCTTCTGCC 57.520 50.000 22.66 17.60 43.53 4.85
1023 1227 0.944311 GGATGGCGACGCATACGAAT 60.944 55.000 23.09 4.71 43.93 3.34
1029 1233 1.815421 GAACAGGATGGCGACGCAT 60.815 57.895 23.09 13.01 43.62 4.73
1047 1257 4.803426 GGCGAGACCAGTGCGAGG 62.803 72.222 0.00 0.00 38.86 4.63
1050 1260 4.803426 GAGGGCGAGACCAGTGCG 62.803 72.222 0.00 0.00 42.05 5.34
1497 1707 0.036164 ATCTGCAAACAGCCACGGTA 59.964 50.000 0.00 0.00 44.10 4.02
1595 1818 4.092237 TCGCACCGTACATTATTTGAACAG 59.908 41.667 0.00 0.00 0.00 3.16
1611 1841 3.175976 AACGCCTTGTTTCGCACCG 62.176 57.895 0.00 0.00 37.59 4.94
2052 8114 3.304525 GGTGTGATACGATTAGGACTCCG 60.305 52.174 0.00 0.00 0.00 4.63
2111 8173 6.683537 TCCTCCTGATTCTAGGAATTAGTCA 58.316 40.000 9.89 0.00 45.82 3.41
2327 8814 4.263639 TGCTCAATTGGAATTCCTCTGTCT 60.264 41.667 24.73 1.61 36.82 3.41
2356 8843 7.701539 TTCTTAGGTTCATACATGCACAATT 57.298 32.000 0.00 0.00 0.00 2.32
2357 8844 7.557358 TCATTCTTAGGTTCATACATGCACAAT 59.443 33.333 0.00 0.00 0.00 2.71
2477 8964 3.815856 TTCCATGTTGTTGCAACACAT 57.184 38.095 31.17 28.84 38.92 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.