AutoCloner

Multiple sequence alignment - TraesCS2D01G437200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G437200	chr2D	100.000	2546	0	0	1	2546	547449810	547452355	0.000000e+00	4702.0
1	TraesCS2D01G437200	chr2D	89.360	1485	114	23	492	1963	547488772	547490225	0.000000e+00	1827.0
2	TraesCS2D01G437200	chr2D	81.122	1462	157	48	596	1992	547286125	547287532	0.000000e+00	1061.0
3	TraesCS2D01G437200	chr2D	81.422	1238	136	41	800	1985	547426978	547428173	0.000000e+00	926.0
4	TraesCS2D01G437200	chr2D	84.327	906	114	14	800	1682	547559289	547560189	0.000000e+00	861.0
5	TraesCS2D01G437200	chr2D	92.843	517	34	2	1	516	547283535	547284049	0.000000e+00	747.0
6	TraesCS2D01G437200	chr2D	92.389	473	28	5	2082	2546	547490684	547491156	0.000000e+00	667.0
7	TraesCS2D01G437200	chr2D	100.000	35	0	0	2052	2086	547490688	547490722	5.880000e-07	65.8
8	TraesCS2D01G437200	chr2A	93.567	1057	62	4	910	1963	690805346	690806399	0.000000e+00	1570.0
9	TraesCS2D01G437200	chr2A	87.529	866	60	17	1	858	690794367	690795192	0.000000e+00	957.0
10	TraesCS2D01G437200	chr2A	82.228	1131	154	28	799	1892	690747278	690748398	0.000000e+00	931.0
11	TraesCS2D01G437200	chr2A	84.512	891	111	16	805	1682	691392185	691391309	0.000000e+00	856.0
12	TraesCS2D01G437200	chr2A	88.435	735	46	16	220	946	690804512	690805215	0.000000e+00	850.0
13	TraesCS2D01G437200	chr2A	89.597	471	42	5	2082	2546	690807641	690808110	2.180000e-165	592.0
14	TraesCS2D01G437200	chr2A	90.756	238	18	3	1	235	690796743	690796979	5.290000e-82	315.0
15	TraesCS2D01G437200	chr2A	100.000	35	0	0	2052	2086	690807645	690807679	5.880000e-07	65.8
16	TraesCS2D01G437200	chr2B	93.980	980	50	3	707	1684	653795996	653796968	0.000000e+00	1474.0
17	TraesCS2D01G437200	chr2B	94.686	621	21	8	1	618	653795378	653795989	0.000000e+00	953.0
18	TraesCS2D01G437200	chr2B	81.710	1181	150	30	860	1992	653788268	653789430	0.000000e+00	924.0
19	TraesCS2D01G437200	chr2B	83.850	904	107	17	814	1682	653808147	653809046	0.000000e+00	824.0
20	TraesCS2D01G437200	chr2B	83.673	196	26	4	2248	2439	13505194	13505387	2.010000e-41	180.0
21	TraesCS2D01G437200	chr5A	81.507	292	39	6	1425	1706	602413162	602413448	2.550000e-55	226.0
22	TraesCS2D01G437200	chr5A	78.400	125	25	2	492	615	470079635	470079512	2.100000e-11	80.5
23	TraesCS2D01G437200	chr5D	86.473	207	24	2	2237	2439	255699637	255699843	9.170000e-55	224.0
24	TraesCS2D01G437200	chr5D	84.264	197	23	6	2248	2439	46328942	46329135	4.330000e-43	185.0
25	TraesCS2D01G437200	chr5D	78.400	125	25	2	492	615	368032574	368032451	2.100000e-11	80.5
26	TraesCS2D01G437200	chr4A	86.190	210	22	4	2237	2443	743382451	743382246	1.190000e-53	220.0
27	TraesCS2D01G437200	chr1B	85.714	203	25	4	2242	2440	45164812	45165014	7.140000e-51	211.0
28	TraesCS2D01G437200	chr6B	85.128	195	22	5	2249	2439	230629397	230629588	2.580000e-45	193.0
29	TraesCS2D01G437200	chr3B	84.974	193	21	5	2251	2439	14317607	14317419	3.340000e-44	189.0
30	TraesCS2D01G437200	chr3A	78.648	281	46	9	339	619	47278138	47278404	9.360000e-40	174.0
31	TraesCS2D01G437200	chr5B	78.295	129	20	5	492	615	436098932	436098807	2.720000e-10	76.8
32	TraesCS2D01G437200	chr7A	75.159	157	30	7	468	618	694199027	694198874	5.880000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G437200	chr2D	547449810	547452355	2545	False	4702.000000	4702	100.000000	1	2546	1	chr2D.!!$F2	2545
1	TraesCS2D01G437200	chr2D	547426978	547428173	1195	False	926.000000	926	81.422000	800	1985	1	chr2D.!!$F1	1185
2	TraesCS2D01G437200	chr2D	547283535	547287532	3997	False	904.000000	1061	86.982500	1	1992	2	chr2D.!!$F4	1991
3	TraesCS2D01G437200	chr2D	547559289	547560189	900	False	861.000000	861	84.327000	800	1682	1	chr2D.!!$F3	882
4	TraesCS2D01G437200	chr2D	547488772	547491156	2384	False	853.266667	1827	93.916333	492	2546	3	chr2D.!!$F5	2054
5	TraesCS2D01G437200	chr2A	690747278	690748398	1120	False	931.000000	931	82.228000	799	1892	1	chr2A.!!$F1	1093
6	TraesCS2D01G437200	chr2A	691391309	691392185	876	True	856.000000	856	84.512000	805	1682	1	chr2A.!!$R1	877
7	TraesCS2D01G437200	chr2A	690804512	690808110	3598	False	769.450000	1570	92.899750	220	2546	4	chr2A.!!$F3	2326
8	TraesCS2D01G437200	chr2A	690794367	690796979	2612	False	636.000000	957	89.142500	1	858	2	chr2A.!!$F2	857
9	TraesCS2D01G437200	chr2B	653795378	653796968	1590	False	1213.500000	1474	94.333000	1	1684	2	chr2B.!!$F4	1683
10	TraesCS2D01G437200	chr2B	653788268	653789430	1162	False	924.000000	924	81.710000	860	1992	1	chr2B.!!$F2	1132
11	TraesCS2D01G437200	chr2B	653808147	653809046	899	False	824.000000	824	83.850000	814	1682	1	chr2B.!!$F3	868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
658	2700	2.671396	CTCTTACGGGAAACGGAATGTG	59.329	50.0	0.0	0.0	45.98	3.21	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1876	5451	1.074244	AGGATAGAGTAGGGTCGAGCC	59.926	57.143	26.17	26.17	0.0	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	4.281688	TCTTATGATGGATGCGATGACTGA	59.718	41.667	0.00	0.00	0.00	3.41
151	155	2.790433	GTTGATGCCCCAACAGACTAA	58.210	47.619	11.86	0.00	44.22	2.24
268	273	5.394553	CCATGGAGGCCTTATTTGAAAACTC	60.395	44.000	6.77	0.00	0.00	3.01
445	451	6.380079	ACTCTTTATCCTCAAAGTCCATGT	57.620	37.500	0.00	0.00	36.94	3.21
658	2700	2.671396	CTCTTACGGGAAACGGAATGTG	59.329	50.000	0.00	0.00	45.98	3.21
662	2704	2.886587	CGGGAAACGGAATGTGTAAC	57.113	50.000	0.00	0.00	39.42	2.50
698	2740	7.655328	ACAGGCGAACAAATTTATTTCATTTGA	59.345	29.630	11.40	0.00	42.10	2.69
699	2741	8.494347	CAGGCGAACAAATTTATTTCATTTGAA	58.506	29.630	11.40	0.00	42.10	2.69
700	2742	8.495148	AGGCGAACAAATTTATTTCATTTGAAC	58.505	29.630	11.40	5.07	42.10	3.18
701	2743	7.744276	GGCGAACAAATTTATTTCATTTGAACC	59.256	33.333	11.40	4.52	42.10	3.62
702	2744	8.495148	GCGAACAAATTTATTTCATTTGAACCT	58.505	29.630	11.40	0.00	42.10	3.50
790	2863	7.038658	GCAAGTATATATCAGGGAGAAGGAAGT	60.039	40.741	0.00	0.00	0.00	3.01
801	2874	4.184629	GGAGAAGGAAGTCGTACGTAGTA	58.815	47.826	16.05	0.00	45.11	1.82
866	2943	7.012421	AGTGAATGCCTTTAATTATTCGGAGAC	59.988	37.037	0.00	0.00	34.32	3.36
896	3654	6.183360	GCTTCATGTTAATTCTCCGAATTCCA	60.183	38.462	5.20	5.04	0.00	3.53
949	3912	4.831155	CCCCTCGTGTTGTCCTATATAAGA	59.169	45.833	0.00	0.00	0.00	2.10
1056	4422	1.541147	GCCATCTTGTTGCTTGCACTA	59.459	47.619	0.00	0.00	0.00	2.74
1331	4706	2.356553	CGGGAAACAAGACGGCGA	60.357	61.111	16.62	0.00	0.00	5.54
1332	4707	1.957186	CGGGAAACAAGACGGCGAA	60.957	57.895	16.62	0.00	0.00	4.70
1647	5194	7.148705	GCGATTTTTGGTTAAGTAATGGGAAAC	60.149	37.037	0.00	0.00	0.00	2.78
1743	5309	5.276461	TCCCGCTATATATACTGCAATGG	57.724	43.478	8.80	6.29	0.00	3.16
1749	5315	7.307396	CCGCTATATATACTGCAATGGTATTGC	60.307	40.741	17.16	17.16	45.11	3.56
1876	5451	1.667154	TTCTCCCCGCAGTCTGATCG	61.667	60.000	3.32	0.00	0.00	3.69
1897	5490	2.429478	GCTCGACCCTACTCTATCCTC	58.571	57.143	0.00	0.00	0.00	3.71
1902	5495	5.455872	TCGACCCTACTCTATCCTCATTTT	58.544	41.667	0.00	0.00	0.00	1.82
1992	5592	8.367156	ACAAACTAATGTATTCAAACAGCCATT	58.633	29.630	0.00	0.00	31.70	3.16
1993	5593	9.206870	CAAACTAATGTATTCAAACAGCCATTT	57.793	29.630	0.00	0.00	31.70	2.32
1994	5594	9.777297	AAACTAATGTATTCAAACAGCCATTTT	57.223	25.926	0.00	0.00	31.70	1.82
1995	5595	9.777297	AACTAATGTATTCAAACAGCCATTTTT	57.223	25.926	0.00	0.00	31.70	1.94
2020	6743	8.159344	TTTGTTTTCTTGGAACAAACACAAAT	57.841	26.923	10.15	0.00	46.32	2.32
2028	6751	6.116680	TGGAACAAACACAAATTGCAAATC	57.883	33.333	1.71	0.00	31.92	2.17
2029	6752	5.645067	TGGAACAAACACAAATTGCAAATCA	59.355	32.000	1.71	0.00	31.92	2.57
2030	6753	5.964751	GGAACAAACACAAATTGCAAATCAC	59.035	36.000	1.71	0.00	0.00	3.06
2031	6754	5.482686	ACAAACACAAATTGCAAATCACC	57.517	34.783	1.71	0.00	0.00	4.02
2032	6755	4.940046	ACAAACACAAATTGCAAATCACCA	59.060	33.333	1.71	0.00	0.00	4.17
2033	6756	5.589452	ACAAACACAAATTGCAAATCACCAT	59.411	32.000	1.71	0.00	0.00	3.55
2035	6758	7.041916	ACAAACACAAATTGCAAATCACCATAG	60.042	33.333	1.71	0.00	0.00	2.23
2036	6759	5.481105	ACACAAATTGCAAATCACCATAGG	58.519	37.500	1.71	0.00	0.00	2.57
2037	6760	5.011943	ACACAAATTGCAAATCACCATAGGT	59.988	36.000	1.71	0.00	35.62	3.08
2091	6874	3.870723	TGTAGTTCACACGTCAATTGC	57.129	42.857	0.00	0.00	30.04	3.56
2092	6875	3.198872	TGTAGTTCACACGTCAATTGCA	58.801	40.909	0.00	0.00	30.04	4.08
2093	6876	3.247411	TGTAGTTCACACGTCAATTGCAG	59.753	43.478	0.00	0.00	30.04	4.41
2094	6877	2.560504	AGTTCACACGTCAATTGCAGA	58.439	42.857	0.00	0.00	0.00	4.26
2095	6878	3.141398	AGTTCACACGTCAATTGCAGAT	58.859	40.909	0.00	0.00	0.00	2.90
2096	6879	3.187227	AGTTCACACGTCAATTGCAGATC	59.813	43.478	0.00	0.00	0.00	2.75
2097	6880	2.765122	TCACACGTCAATTGCAGATCA	58.235	42.857	0.00	0.00	0.00	2.92
2098	6881	2.480037	TCACACGTCAATTGCAGATCAC	59.520	45.455	0.00	0.00	0.00	3.06
2099	6882	1.806542	ACACGTCAATTGCAGATCACC	59.193	47.619	0.00	0.00	0.00	4.02
2100	6883	1.805943	CACGTCAATTGCAGATCACCA	59.194	47.619	0.00	0.00	0.00	4.17
2101	6884	1.806542	ACGTCAATTGCAGATCACCAC	59.193	47.619	0.00	0.00	0.00	4.16
2102	6885	2.079158	CGTCAATTGCAGATCACCACT	58.921	47.619	0.00	0.00	0.00	4.00
2103	6886	2.159612	CGTCAATTGCAGATCACCACTG	60.160	50.000	0.00	0.00	38.27	3.66
2104	6887	2.163010	GTCAATTGCAGATCACCACTGG	59.837	50.000	0.00	0.00	36.09	4.00
2105	6888	2.165167	CAATTGCAGATCACCACTGGT	58.835	47.619	0.00	0.00	36.09	4.00
2188	6971	9.979270	GAGATTACTACATGTCAATTTCAGTTG	57.021	33.333	0.00	0.00	0.00	3.16
2250	7034	7.883833	AGTCCTAAAAACTCTACCTCCATTTTC	59.116	37.037	0.00	0.00	0.00	2.29
2294	7083	2.490903	GGACTCTACTGTTGCCGACTTA	59.509	50.000	0.00	0.00	0.00	2.24
2321	7110	7.535940	TCGCTTTTGTTACTTTTCCATTTATCG	59.464	33.333	0.00	0.00	0.00	2.92
2338	7127	2.027003	TCGGACTTTTGTTGTTCGGT	57.973	45.000	0.00	0.00	0.00	4.69
2342	7131	2.416162	GGACTTTTGTTGTTCGGTTGCA	60.416	45.455	0.00	0.00	0.00	4.08
2357	7146	4.039852	TCGGTTGCATGCATCCTAGTTATA	59.960	41.667	34.02	11.15	34.54	0.98
2360	7149	5.530915	GGTTGCATGCATCCTAGTTATACAA	59.469	40.000	31.84	7.60	34.04	2.41
2392	7181	9.174166	GGGTGTTACTCATAATGTTTTGTATCT	57.826	33.333	0.00	0.00	0.00	1.98
2410	7199	8.504812	TTGTATCTGCTTGATGCTACATTTTA	57.495	30.769	8.96	0.00	43.37	1.52
2486	7278	1.153086	GCCTGCATCCGGATCACTT	60.153	57.895	15.88	0.00	0.00	3.16
2501	7293	1.906574	TCACTTCACCATGACTACCCC	59.093	52.381	0.00	0.00	0.00	4.95

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	0.674895	GGCAAGTTGGCGAGTGAGAT	60.675	55.000	14.24	0.00	31.79	2.75
121	125	0.383949	GGGCATCAACACAAACACGT	59.616	50.000	0.00	0.00	0.00	4.49
335	341	7.795431	TTTCGATCTGAAATTTTACACATGC	57.205	32.000	8.13	0.00	41.59	4.06
583	2623	3.956848	AGCTCCATGAAGGCCTTAATTTC	59.043	43.478	20.54	6.15	37.29	2.17
658	2700	4.217754	TCGCCTGTTGAACATTTGTTAC	57.782	40.909	0.00	0.00	38.56	2.50
713	2755	9.829507	ACAAAAATGTGAGGACAAATGAAATAA	57.170	25.926	0.00	0.00	35.11	1.40
714	2756	9.258826	CACAAAAATGTGAGGACAAATGAAATA	57.741	29.630	2.88	0.00	42.02	1.40
715	2757	7.769970	ACACAAAAATGTGAGGACAAATGAAAT	59.230	29.630	15.26	0.00	42.02	2.17
716	2758	7.102346	ACACAAAAATGTGAGGACAAATGAAA	58.898	30.769	15.26	0.00	42.02	2.69
717	2759	6.638610	ACACAAAAATGTGAGGACAAATGAA	58.361	32.000	15.26	0.00	42.02	2.57
718	2760	6.219417	ACACAAAAATGTGAGGACAAATGA	57.781	33.333	15.26	0.00	42.02	2.57
790	2863	5.544136	TTTGCATGTACTACTACGTACGA	57.456	39.130	24.41	4.69	42.00	3.43
801	2874	2.486592	GGTTAGCCGTTTTGCATGTACT	59.513	45.455	0.00	0.00	0.00	2.73
802	2875	2.486592	AGGTTAGCCGTTTTGCATGTAC	59.513	45.455	0.00	0.00	40.50	2.90
803	2876	2.486203	CAGGTTAGCCGTTTTGCATGTA	59.514	45.455	0.00	0.00	40.50	2.29
850	2926	3.488310	GCGCTCGTCTCCGAATAATTAAA	59.512	43.478	0.00	0.00	43.69	1.52
858	2935	1.934220	ATGAAGCGCTCGTCTCCGAA	61.934	55.000	12.06	0.00	43.69	4.30
866	2943	3.302740	GGAGAATTAACATGAAGCGCTCG	60.303	47.826	12.06	1.94	0.00	5.03
949	3912	6.017357	GGTGAAGTTTTAGAGGAATTGACGTT	60.017	38.462	0.00	0.00	0.00	3.99
1056	4422	1.274728	GATGCCAGTGACTGTGAGACT	59.725	52.381	12.15	0.00	0.00	3.24
1624	5167	8.085909	CGAGTTTCCCATTACTTAACCAAAAAT	58.914	33.333	0.00	0.00	0.00	1.82
1647	5194	2.152016	TCAGTCACAGTGTAGTCCGAG	58.848	52.381	0.00	0.00	0.00	4.63
1743	5309	6.090628	GCACTATCAGATTCAGCTAGCAATAC	59.909	42.308	18.83	4.25	0.00	1.89
1749	5315	6.257423	CGATAGCACTATCAGATTCAGCTAG	58.743	44.000	15.94	0.00	41.44	3.42
1876	5451	1.074244	AGGATAGAGTAGGGTCGAGCC	59.926	57.143	26.17	26.17	0.00	4.70
1967	5566	8.761575	AATGGCTGTTTGAATACATTAGTTTG	57.238	30.769	0.00	0.00	0.00	2.93
1997	5597	7.579726	CAATTTGTGTTTGTTCCAAGAAAACA	58.420	30.769	0.00	0.00	40.49	2.83
2000	5600	5.702670	TGCAATTTGTGTTTGTTCCAAGAAA	59.297	32.000	0.00	0.00	0.00	2.52
2002	5602	4.825422	TGCAATTTGTGTTTGTTCCAAGA	58.175	34.783	0.00	0.00	0.00	3.02
2004	5604	5.947228	TTTGCAATTTGTGTTTGTTCCAA	57.053	30.435	0.00	0.00	0.00	3.53
2005	5605	5.645067	TGATTTGCAATTTGTGTTTGTTCCA	59.355	32.000	0.00	0.00	0.00	3.53
2037	6760	1.265635	GCAATTGGCGTGTGAACTACA	59.734	47.619	7.72	0.00	36.82	2.74
2038	6761	1.963747	GCAATTGGCGTGTGAACTAC	58.036	50.000	7.72	0.00	0.00	2.73
2050	6773	3.559069	ACCTATGGTGATCTGCAATTGG	58.441	45.455	7.72	0.00	32.98	3.16
2086	6869	2.592102	ACCAGTGGTGATCTGCAATT	57.408	45.000	15.86	0.00	32.98	2.32
2105	6888	5.106869	GCATTTTATGGACGTGTGAACTACA	60.107	40.000	0.00	0.00	36.82	2.74
2106	6889	5.106869	TGCATTTTATGGACGTGTGAACTAC	60.107	40.000	0.00	0.00	0.00	2.73
2107	6890	4.998033	TGCATTTTATGGACGTGTGAACTA	59.002	37.500	0.00	0.00	0.00	2.24
2108	6891	3.818210	TGCATTTTATGGACGTGTGAACT	59.182	39.130	0.00	0.00	0.00	3.01
2109	6892	4.153958	TGCATTTTATGGACGTGTGAAC	57.846	40.909	0.00	0.00	0.00	3.18
2110	6893	3.190327	CCTGCATTTTATGGACGTGTGAA	59.810	43.478	0.00	0.00	0.00	3.18
2111	6894	2.746904	CCTGCATTTTATGGACGTGTGA	59.253	45.455	0.00	0.00	0.00	3.58
2112	6895	2.731968	GCCTGCATTTTATGGACGTGTG	60.732	50.000	0.00	0.00	0.00	3.82
2113	6896	1.472480	GCCTGCATTTTATGGACGTGT	59.528	47.619	0.00	0.00	0.00	4.49
2114	6897	1.472082	TGCCTGCATTTTATGGACGTG	59.528	47.619	0.00	0.00	0.00	4.49
2115	6898	1.832883	TGCCTGCATTTTATGGACGT	58.167	45.000	0.00	0.00	0.00	4.34
2116	6899	2.937469	TTGCCTGCATTTTATGGACG	57.063	45.000	0.00	0.00	0.00	4.79
2117	6900	4.036262	TCGTATTGCCTGCATTTTATGGAC	59.964	41.667	0.00	0.00	0.00	4.02
2118	6901	4.203226	TCGTATTGCCTGCATTTTATGGA	58.797	39.130	0.00	0.00	0.00	3.41
2119	6902	4.036734	ACTCGTATTGCCTGCATTTTATGG	59.963	41.667	0.00	0.00	0.00	2.74
2183	6966	8.842280	TGTAGTCCAATTTTTAGTAACCAACTG	58.158	33.333	0.00	0.00	39.39	3.16
2294	7083	9.353999	GATAAATGGAAAAGTAACAAAAGCGAT	57.646	29.630	0.00	0.00	0.00	4.58
2298	7087	9.124807	GTCCGATAAATGGAAAAGTAACAAAAG	57.875	33.333	0.00	0.00	37.23	2.27
2318	7107	2.567985	ACCGAACAACAAAAGTCCGAT	58.432	42.857	0.00	0.00	0.00	4.18
2321	7110	2.190161	GCAACCGAACAACAAAAGTCC	58.810	47.619	0.00	0.00	0.00	3.85
2338	7127	6.262944	CCTTTGTATAACTAGGATGCATGCAA	59.737	38.462	26.68	7.10	0.00	4.08
2342	7131	6.223852	CGACCTTTGTATAACTAGGATGCAT	58.776	40.000	0.00	0.00	0.00	3.96
2357	7146	1.764134	TGAGTAACACCCGACCTTTGT	59.236	47.619	0.00	0.00	0.00	2.83
2360	7149	4.224370	ACATTATGAGTAACACCCGACCTT	59.776	41.667	0.00	0.00	0.00	3.50
2439	7231	8.611257	TCCTTGACTGAATTTTCTTAGGGATTA	58.389	33.333	0.00	0.00	0.00	1.75
2501	7293	3.749226	AGAGAACTCAAGAAGCAAAGGG	58.251	45.455	4.64	0.00	0.00	3.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.