Multiple sequence alignment - TraesCS2D01G436800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G436800 chr2D 100.000 3391 0 0 1 3391 547271605 547274995 0.000000e+00 6263.0
1 TraesCS2D01G436800 chr2D 79.763 1013 129 34 2410 3379 547572452 547573431 0.000000e+00 665.0
2 TraesCS2D01G436800 chr2B 92.314 2498 138 28 429 2905 653750194 653752658 0.000000e+00 3500.0
3 TraesCS2D01G436800 chr2B 89.121 478 39 6 2903 3379 653760939 653761404 1.750000e-162 582.0
4 TraesCS2D01G436800 chr2B 78.251 915 133 33 2410 3279 653807154 653808047 8.330000e-146 527.0
5 TraesCS2D01G436800 chr2A 91.803 2135 114 28 370 2478 690742478 690744577 0.000000e+00 2916.0
6 TraesCS2D01G436800 chr2A 88.006 692 64 11 2704 3379 690745147 690745835 0.000000e+00 800.0
7 TraesCS2D01G436800 chr1B 81.818 110 20 0 128 237 61964926 61964817 3.600000e-15 93.5
8 TraesCS2D01G436800 chr1A 97.368 38 1 0 128 165 548667934 548667971 7.850000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G436800 chr2D 547271605 547274995 3390 False 6263 6263 100.0000 1 3391 1 chr2D.!!$F1 3390
1 TraesCS2D01G436800 chr2D 547572452 547573431 979 False 665 665 79.7630 2410 3379 1 chr2D.!!$F2 969
2 TraesCS2D01G436800 chr2B 653750194 653752658 2464 False 3500 3500 92.3140 429 2905 1 chr2B.!!$F1 2476
3 TraesCS2D01G436800 chr2B 653807154 653808047 893 False 527 527 78.2510 2410 3279 1 chr2B.!!$F3 869
4 TraesCS2D01G436800 chr2A 690742478 690745835 3357 False 1858 2916 89.9045 370 3379 2 chr2A.!!$F1 3009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.031616 AGATCGAGGGAAGGAAGGCT 60.032 55.0 0.0 0.0 0.00 4.58 F
408 409 0.110486 ACACGCCAATGGTCTTTCCT 59.890 50.0 0.0 0.0 37.07 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1620 1.314867 GATCTCCCAGTCCTCCCCA 59.685 63.158 0.00 0.0 0.0 4.96 R
2391 2421 0.690762 TCTTGCCAAGTACACCCTCC 59.309 55.000 4.04 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.999046 CACCTCGGTTTTTACTAGTGGT 58.001 45.455 5.39 0.00 0.00 4.16
22 23 5.138125 CACCTCGGTTTTTACTAGTGGTA 57.862 43.478 5.39 0.00 0.00 3.25
23 24 5.727434 CACCTCGGTTTTTACTAGTGGTAT 58.273 41.667 5.39 0.00 0.00 2.73
24 25 6.168389 CACCTCGGTTTTTACTAGTGGTATT 58.832 40.000 5.39 0.00 0.00 1.89
25 26 6.652062 CACCTCGGTTTTTACTAGTGGTATTT 59.348 38.462 5.39 0.00 0.00 1.40
26 27 7.173735 CACCTCGGTTTTTACTAGTGGTATTTT 59.826 37.037 5.39 0.00 0.00 1.82
27 28 7.173735 ACCTCGGTTTTTACTAGTGGTATTTTG 59.826 37.037 5.39 0.00 0.00 2.44
28 29 7.388500 CCTCGGTTTTTACTAGTGGTATTTTGA 59.612 37.037 5.39 0.00 0.00 2.69
29 30 8.086851 TCGGTTTTTACTAGTGGTATTTTGAC 57.913 34.615 5.39 0.00 0.00 3.18
30 31 7.714377 TCGGTTTTTACTAGTGGTATTTTGACA 59.286 33.333 5.39 0.00 0.00 3.58
31 32 8.508875 CGGTTTTTACTAGTGGTATTTTGACAT 58.491 33.333 5.39 0.00 0.00 3.06
32 33 9.620660 GGTTTTTACTAGTGGTATTTTGACATG 57.379 33.333 5.39 0.00 0.00 3.21
36 37 6.721571 ACTAGTGGTATTTTGACATGTTCG 57.278 37.500 0.00 0.00 0.00 3.95
37 38 5.642063 ACTAGTGGTATTTTGACATGTTCGG 59.358 40.000 0.00 0.00 0.00 4.30
38 39 4.394729 AGTGGTATTTTGACATGTTCGGT 58.605 39.130 0.00 0.00 0.00 4.69
39 40 4.825085 AGTGGTATTTTGACATGTTCGGTT 59.175 37.500 0.00 0.00 0.00 4.44
40 41 5.300792 AGTGGTATTTTGACATGTTCGGTTT 59.699 36.000 0.00 0.00 0.00 3.27
41 42 5.980715 GTGGTATTTTGACATGTTCGGTTTT 59.019 36.000 0.00 0.00 0.00 2.43
42 43 6.143278 GTGGTATTTTGACATGTTCGGTTTTC 59.857 38.462 0.00 0.00 0.00 2.29
43 44 6.183360 TGGTATTTTGACATGTTCGGTTTTCA 60.183 34.615 0.00 0.00 0.00 2.69
44 45 6.143278 GGTATTTTGACATGTTCGGTTTTCAC 59.857 38.462 0.00 0.00 0.00 3.18
45 46 4.974368 TTTGACATGTTCGGTTTTCACT 57.026 36.364 0.00 0.00 0.00 3.41
46 47 6.438259 TTTTGACATGTTCGGTTTTCACTA 57.562 33.333 0.00 0.00 0.00 2.74
47 48 6.438259 TTTGACATGTTCGGTTTTCACTAA 57.562 33.333 0.00 0.00 0.00 2.24
48 49 6.627395 TTGACATGTTCGGTTTTCACTAAT 57.373 33.333 0.00 0.00 0.00 1.73
49 50 5.996219 TGACATGTTCGGTTTTCACTAATG 58.004 37.500 0.00 0.00 0.00 1.90
50 51 5.049060 TGACATGTTCGGTTTTCACTAATGG 60.049 40.000 0.00 0.00 0.00 3.16
51 52 4.825085 ACATGTTCGGTTTTCACTAATGGT 59.175 37.500 0.00 0.00 0.00 3.55
52 53 5.998981 ACATGTTCGGTTTTCACTAATGGTA 59.001 36.000 0.00 0.00 0.00 3.25
53 54 6.657541 ACATGTTCGGTTTTCACTAATGGTAT 59.342 34.615 0.00 0.00 0.00 2.73
54 55 7.175990 ACATGTTCGGTTTTCACTAATGGTATT 59.824 33.333 0.00 0.00 0.00 1.89
55 56 7.513371 TGTTCGGTTTTCACTAATGGTATTT 57.487 32.000 0.00 0.00 0.00 1.40
56 57 8.618702 TGTTCGGTTTTCACTAATGGTATTTA 57.381 30.769 0.00 0.00 0.00 1.40
57 58 8.723311 TGTTCGGTTTTCACTAATGGTATTTAG 58.277 33.333 0.00 0.00 35.68 1.85
58 59 7.852971 TCGGTTTTCACTAATGGTATTTAGG 57.147 36.000 0.00 0.00 34.19 2.69
59 60 6.316890 TCGGTTTTCACTAATGGTATTTAGGC 59.683 38.462 0.00 0.00 34.19 3.93
60 61 6.317893 CGGTTTTCACTAATGGTATTTAGGCT 59.682 38.462 0.00 0.00 34.19 4.58
61 62 7.496591 CGGTTTTCACTAATGGTATTTAGGCTA 59.503 37.037 0.00 0.00 34.19 3.93
62 63 9.350951 GGTTTTCACTAATGGTATTTAGGCTAT 57.649 33.333 0.00 0.00 34.19 2.97
65 66 9.569122 TTTCACTAATGGTATTTAGGCTATTCC 57.431 33.333 0.00 0.00 34.19 3.01
66 67 7.686434 TCACTAATGGTATTTAGGCTATTCCC 58.314 38.462 0.00 0.00 34.19 3.97
67 68 7.516209 TCACTAATGGTATTTAGGCTATTCCCT 59.484 37.037 0.00 0.00 39.05 4.20
68 69 7.824779 CACTAATGGTATTTAGGCTATTCCCTC 59.175 40.741 0.00 0.00 36.41 4.30
69 70 5.780958 ATGGTATTTAGGCTATTCCCTCC 57.219 43.478 0.00 0.00 36.41 4.30
70 71 4.572978 TGGTATTTAGGCTATTCCCTCCA 58.427 43.478 0.00 0.00 36.41 3.86
71 72 4.979039 TGGTATTTAGGCTATTCCCTCCAA 59.021 41.667 0.00 0.00 36.41 3.53
72 73 5.073144 TGGTATTTAGGCTATTCCCTCCAAG 59.927 44.000 0.00 0.00 36.41 3.61
73 74 5.309806 GGTATTTAGGCTATTCCCTCCAAGA 59.690 44.000 0.00 0.00 36.41 3.02
74 75 5.994416 ATTTAGGCTATTCCCTCCAAGAA 57.006 39.130 0.00 0.00 36.41 2.52
75 76 5.789574 TTTAGGCTATTCCCTCCAAGAAA 57.210 39.130 0.00 0.00 36.41 2.52
76 77 5.789574 TTAGGCTATTCCCTCCAAGAAAA 57.210 39.130 0.00 0.00 36.41 2.29
77 78 4.675063 AGGCTATTCCCTCCAAGAAAAA 57.325 40.909 0.00 0.00 34.51 1.94
78 79 4.344978 AGGCTATTCCCTCCAAGAAAAAC 58.655 43.478 0.00 0.00 34.51 2.43
79 80 3.447586 GGCTATTCCCTCCAAGAAAAACC 59.552 47.826 0.00 0.00 0.00 3.27
80 81 3.447586 GCTATTCCCTCCAAGAAAAACCC 59.552 47.826 0.00 0.00 0.00 4.11
81 82 3.923273 ATTCCCTCCAAGAAAAACCCT 57.077 42.857 0.00 0.00 0.00 4.34
82 83 5.574948 GCTATTCCCTCCAAGAAAAACCCTA 60.575 44.000 0.00 0.00 0.00 3.53
83 84 4.817874 TTCCCTCCAAGAAAAACCCTAA 57.182 40.909 0.00 0.00 0.00 2.69
84 85 4.817874 TCCCTCCAAGAAAAACCCTAAA 57.182 40.909 0.00 0.00 0.00 1.85
85 86 4.476297 TCCCTCCAAGAAAAACCCTAAAC 58.524 43.478 0.00 0.00 0.00 2.01
86 87 4.169264 TCCCTCCAAGAAAAACCCTAAACT 59.831 41.667 0.00 0.00 0.00 2.66
87 88 4.523173 CCCTCCAAGAAAAACCCTAAACTC 59.477 45.833 0.00 0.00 0.00 3.01
88 89 4.215613 CCTCCAAGAAAAACCCTAAACTCG 59.784 45.833 0.00 0.00 0.00 4.18
89 90 4.139038 TCCAAGAAAAACCCTAAACTCGG 58.861 43.478 0.00 0.00 0.00 4.63
90 91 3.305131 CCAAGAAAAACCCTAAACTCGGC 60.305 47.826 0.00 0.00 0.00 5.54
91 92 3.217681 AGAAAAACCCTAAACTCGGCA 57.782 42.857 0.00 0.00 0.00 5.69
92 93 2.882761 AGAAAAACCCTAAACTCGGCAC 59.117 45.455 0.00 0.00 0.00 5.01
93 94 1.612676 AAAACCCTAAACTCGGCACC 58.387 50.000 0.00 0.00 0.00 5.01
94 95 0.251033 AAACCCTAAACTCGGCACCC 60.251 55.000 0.00 0.00 0.00 4.61
95 96 2.133359 AACCCTAAACTCGGCACCCC 62.133 60.000 0.00 0.00 0.00 4.95
105 106 3.319198 GGCACCCCGAGGAGTTGA 61.319 66.667 0.00 0.00 36.73 3.18
106 107 2.047179 GCACCCCGAGGAGTTGAC 60.047 66.667 0.00 0.00 36.73 3.18
107 108 2.584391 GCACCCCGAGGAGTTGACT 61.584 63.158 0.00 0.00 36.73 3.41
108 109 1.592223 CACCCCGAGGAGTTGACTC 59.408 63.158 2.51 2.51 42.14 3.36
109 110 0.900647 CACCCCGAGGAGTTGACTCT 60.901 60.000 10.68 0.00 42.48 3.24
110 111 0.702902 ACCCCGAGGAGTTGACTCTA 59.297 55.000 10.68 0.00 42.48 2.43
111 112 1.104630 CCCCGAGGAGTTGACTCTAC 58.895 60.000 10.68 5.01 42.48 2.59
112 113 1.616187 CCCCGAGGAGTTGACTCTACA 60.616 57.143 10.68 0.00 42.48 2.74
113 114 1.473278 CCCGAGGAGTTGACTCTACAC 59.527 57.143 10.68 0.00 42.48 2.90
114 115 1.473278 CCGAGGAGTTGACTCTACACC 59.527 57.143 10.68 0.00 42.48 4.16
115 116 1.130749 CGAGGAGTTGACTCTACACCG 59.869 57.143 10.68 4.61 42.48 4.94
116 117 2.434428 GAGGAGTTGACTCTACACCGA 58.566 52.381 10.68 0.00 42.48 4.69
117 118 2.818432 GAGGAGTTGACTCTACACCGAA 59.182 50.000 10.68 0.00 42.48 4.30
118 119 2.820787 AGGAGTTGACTCTACACCGAAG 59.179 50.000 10.68 0.00 42.48 3.79
120 121 2.094649 GAGTTGACTCTACACCGAAGGG 60.095 54.545 3.93 0.00 46.37 3.95
121 122 4.621751 GAGTTGACTCTACACCGAAGGGT 61.622 52.174 3.93 0.00 46.37 4.34
122 123 6.396209 GAGTTGACTCTACACCGAAGGGTC 62.396 54.167 3.93 0.00 46.37 4.46
134 135 2.968675 CGAAGGGTCAGTTTAATCCGT 58.031 47.619 0.00 0.00 0.00 4.69
135 136 2.928116 CGAAGGGTCAGTTTAATCCGTC 59.072 50.000 0.00 0.00 0.00 4.79
136 137 3.268330 GAAGGGTCAGTTTAATCCGTCC 58.732 50.000 0.00 0.00 0.00 4.79
137 138 1.558294 AGGGTCAGTTTAATCCGTCCC 59.442 52.381 0.00 0.00 0.00 4.46
138 139 1.648504 GGTCAGTTTAATCCGTCCCG 58.351 55.000 0.00 0.00 0.00 5.14
139 140 1.205417 GGTCAGTTTAATCCGTCCCGA 59.795 52.381 0.00 0.00 0.00 5.14
140 141 2.265683 GTCAGTTTAATCCGTCCCGAC 58.734 52.381 0.00 0.00 0.00 4.79
141 142 1.894466 TCAGTTTAATCCGTCCCGACA 59.106 47.619 0.00 0.00 0.00 4.35
142 143 2.299582 TCAGTTTAATCCGTCCCGACAA 59.700 45.455 0.00 0.00 0.00 3.18
143 144 3.068560 CAGTTTAATCCGTCCCGACAAA 58.931 45.455 0.00 0.00 0.00 2.83
144 145 3.069289 AGTTTAATCCGTCCCGACAAAC 58.931 45.455 0.00 0.00 0.00 2.93
145 146 1.712401 TTAATCCGTCCCGACAAACG 58.288 50.000 0.00 0.00 42.18 3.60
146 147 0.887247 TAATCCGTCCCGACAAACGA 59.113 50.000 0.00 0.00 45.77 3.85
147 148 0.033781 AATCCGTCCCGACAAACGAA 59.966 50.000 0.00 0.00 45.77 3.85
148 149 0.668401 ATCCGTCCCGACAAACGAAC 60.668 55.000 0.00 0.00 45.77 3.95
149 150 1.300388 CCGTCCCGACAAACGAACT 60.300 57.895 0.00 0.00 45.77 3.01
150 151 0.877213 CCGTCCCGACAAACGAACTT 60.877 55.000 0.00 0.00 45.77 2.66
151 152 0.231279 CGTCCCGACAAACGAACTTG 59.769 55.000 0.00 0.00 45.77 3.16
152 153 1.574134 GTCCCGACAAACGAACTTGA 58.426 50.000 0.00 0.00 45.77 3.02
153 154 1.525619 GTCCCGACAAACGAACTTGAG 59.474 52.381 0.00 0.00 45.77 3.02
154 155 0.865769 CCCGACAAACGAACTTGAGG 59.134 55.000 0.00 0.00 45.77 3.86
155 156 1.539496 CCCGACAAACGAACTTGAGGA 60.539 52.381 0.00 0.00 45.77 3.71
156 157 1.792949 CCGACAAACGAACTTGAGGAG 59.207 52.381 0.00 0.00 45.77 3.69
157 158 1.792949 CGACAAACGAACTTGAGGAGG 59.207 52.381 0.00 0.00 45.77 4.30
158 159 2.545113 CGACAAACGAACTTGAGGAGGA 60.545 50.000 0.00 0.00 45.77 3.71
159 160 3.665190 GACAAACGAACTTGAGGAGGAT 58.335 45.455 0.00 0.00 0.00 3.24
160 161 3.665190 ACAAACGAACTTGAGGAGGATC 58.335 45.455 0.00 0.00 0.00 3.36
161 162 2.656560 AACGAACTTGAGGAGGATCG 57.343 50.000 0.00 0.00 41.63 3.69
162 163 0.818296 ACGAACTTGAGGAGGATCGG 59.182 55.000 0.00 0.00 40.78 4.18
163 164 1.103803 CGAACTTGAGGAGGATCGGA 58.896 55.000 0.00 0.00 36.07 4.55
164 165 1.066303 CGAACTTGAGGAGGATCGGAG 59.934 57.143 0.00 0.00 36.07 4.63
165 166 2.104170 GAACTTGAGGAGGATCGGAGT 58.896 52.381 0.00 0.00 34.37 3.85
166 167 2.239681 ACTTGAGGAGGATCGGAGTT 57.760 50.000 0.00 0.00 34.37 3.01
167 168 2.104170 ACTTGAGGAGGATCGGAGTTC 58.896 52.381 0.00 0.00 34.37 3.01
168 169 1.066303 CTTGAGGAGGATCGGAGTTCG 59.934 57.143 0.00 0.00 40.90 3.95
169 170 0.752009 TGAGGAGGATCGGAGTTCGG 60.752 60.000 0.00 0.00 39.77 4.30
170 171 0.465824 GAGGAGGATCGGAGTTCGGA 60.466 60.000 0.00 0.00 39.77 4.55
171 172 0.033405 AGGAGGATCGGAGTTCGGAA 60.033 55.000 0.00 0.00 39.77 4.30
172 173 0.386113 GGAGGATCGGAGTTCGGAAG 59.614 60.000 0.00 0.00 39.77 3.46
173 174 1.390565 GAGGATCGGAGTTCGGAAGA 58.609 55.000 0.00 0.00 39.77 2.87
174 175 1.065851 GAGGATCGGAGTTCGGAAGAC 59.934 57.143 0.00 0.00 41.84 3.01
175 176 0.102663 GGATCGGAGTTCGGAAGACC 59.897 60.000 0.00 0.00 41.84 3.85
189 190 4.224715 GGAAGACCGACCAAAAGAAAAG 57.775 45.455 0.00 0.00 0.00 2.27
190 191 3.004419 GGAAGACCGACCAAAAGAAAAGG 59.996 47.826 0.00 0.00 0.00 3.11
191 192 3.292492 AGACCGACCAAAAGAAAAGGT 57.708 42.857 0.00 0.00 38.63 3.50
192 193 2.949644 AGACCGACCAAAAGAAAAGGTG 59.050 45.455 0.00 0.00 35.36 4.00
193 194 2.686405 GACCGACCAAAAGAAAAGGTGT 59.314 45.455 0.00 0.00 35.36 4.16
194 195 3.093814 ACCGACCAAAAGAAAAGGTGTT 58.906 40.909 0.00 0.00 35.36 3.32
195 196 3.119280 ACCGACCAAAAGAAAAGGTGTTG 60.119 43.478 0.00 0.00 35.36 3.33
196 197 2.857748 CGACCAAAAGAAAAGGTGTTGC 59.142 45.455 0.00 0.00 35.36 4.17
197 198 3.194861 GACCAAAAGAAAAGGTGTTGCC 58.805 45.455 0.00 0.00 35.36 4.52
198 199 2.569404 ACCAAAAGAAAAGGTGTTGCCA 59.431 40.909 0.00 0.00 40.61 4.92
199 200 3.199727 ACCAAAAGAAAAGGTGTTGCCAT 59.800 39.130 0.00 0.00 40.61 4.40
200 201 4.198530 CCAAAAGAAAAGGTGTTGCCATT 58.801 39.130 0.00 0.00 40.61 3.16
201 202 4.273235 CCAAAAGAAAAGGTGTTGCCATTC 59.727 41.667 0.00 0.00 40.61 2.67
202 203 3.369546 AAGAAAAGGTGTTGCCATTCG 57.630 42.857 0.00 0.00 39.13 3.34
203 204 2.306847 AGAAAAGGTGTTGCCATTCGT 58.693 42.857 0.00 0.00 39.13 3.85
204 205 2.293399 AGAAAAGGTGTTGCCATTCGTC 59.707 45.455 0.00 0.00 39.13 4.20
205 206 0.958822 AAAGGTGTTGCCATTCGTCC 59.041 50.000 0.00 0.00 40.61 4.79
206 207 0.110486 AAGGTGTTGCCATTCGTCCT 59.890 50.000 0.00 0.00 40.61 3.85
207 208 0.981183 AGGTGTTGCCATTCGTCCTA 59.019 50.000 0.00 0.00 40.61 2.94
208 209 1.066143 AGGTGTTGCCATTCGTCCTAG 60.066 52.381 0.00 0.00 40.61 3.02
209 210 0.727398 GTGTTGCCATTCGTCCTAGC 59.273 55.000 0.00 0.00 0.00 3.42
210 211 0.739462 TGTTGCCATTCGTCCTAGCG 60.739 55.000 0.00 0.00 0.00 4.26
211 212 0.739813 GTTGCCATTCGTCCTAGCGT 60.740 55.000 0.00 0.00 0.00 5.07
212 213 0.459585 TTGCCATTCGTCCTAGCGTC 60.460 55.000 0.00 0.00 0.00 5.19
213 214 1.944676 GCCATTCGTCCTAGCGTCG 60.945 63.158 0.00 0.00 0.00 5.12
214 215 1.725665 CCATTCGTCCTAGCGTCGA 59.274 57.895 0.00 0.00 0.00 4.20
215 216 0.311165 CCATTCGTCCTAGCGTCGAT 59.689 55.000 0.00 0.00 33.72 3.59
216 217 1.663445 CCATTCGTCCTAGCGTCGATC 60.663 57.143 0.00 0.00 33.72 3.69
217 218 0.592148 ATTCGTCCTAGCGTCGATCC 59.408 55.000 0.00 0.00 33.72 3.36
218 219 0.463295 TTCGTCCTAGCGTCGATCCT 60.463 55.000 0.00 0.00 33.72 3.24
219 220 1.158484 TCGTCCTAGCGTCGATCCTG 61.158 60.000 0.00 0.00 0.00 3.86
220 221 1.008309 GTCCTAGCGTCGATCCTGC 60.008 63.158 0.00 0.00 0.00 4.85
221 222 2.050895 CCTAGCGTCGATCCTGCG 60.051 66.667 0.00 0.00 0.00 5.18
222 223 2.543802 CCTAGCGTCGATCCTGCGA 61.544 63.158 0.00 0.00 38.07 5.10
223 224 1.082431 CTAGCGTCGATCCTGCGAG 60.082 63.158 0.00 0.00 41.49 5.03
224 225 2.450960 CTAGCGTCGATCCTGCGAGG 62.451 65.000 0.00 0.00 45.73 4.63
234 235 0.611714 TCCTGCGAGGACTAAAACCC 59.388 55.000 1.25 0.00 40.06 4.11
235 236 0.613777 CCTGCGAGGACTAAAACCCT 59.386 55.000 0.00 0.00 37.67 4.34
236 237 1.829222 CCTGCGAGGACTAAAACCCTA 59.171 52.381 0.00 0.00 37.67 3.53
237 238 2.235402 CCTGCGAGGACTAAAACCCTAA 59.765 50.000 0.00 0.00 37.67 2.69
238 239 3.118371 CCTGCGAGGACTAAAACCCTAAT 60.118 47.826 0.00 0.00 37.67 1.73
239 240 4.100498 CCTGCGAGGACTAAAACCCTAATA 59.900 45.833 0.00 0.00 37.67 0.98
240 241 5.395990 CCTGCGAGGACTAAAACCCTAATAA 60.396 44.000 0.00 0.00 37.67 1.40
241 242 6.052405 TGCGAGGACTAAAACCCTAATAAA 57.948 37.500 0.00 0.00 31.84 1.40
242 243 6.655930 TGCGAGGACTAAAACCCTAATAAAT 58.344 36.000 0.00 0.00 31.84 1.40
243 244 6.764560 TGCGAGGACTAAAACCCTAATAAATC 59.235 38.462 0.00 0.00 31.84 2.17
244 245 6.990939 GCGAGGACTAAAACCCTAATAAATCT 59.009 38.462 0.00 0.00 31.84 2.40
245 246 8.146412 GCGAGGACTAAAACCCTAATAAATCTA 58.854 37.037 0.00 0.00 31.84 1.98
258 259 9.587772 CCCTAATAAATCTAATACCTGATGTCG 57.412 37.037 0.00 0.00 0.00 4.35
262 263 4.792521 ATCTAATACCTGATGTCGAGGC 57.207 45.455 0.00 0.00 33.39 4.70
263 264 2.552743 TCTAATACCTGATGTCGAGGCG 59.447 50.000 0.00 0.00 33.39 5.52
264 265 0.249489 AATACCTGATGTCGAGGCGC 60.249 55.000 0.00 0.00 33.39 6.53
265 266 2.088674 ATACCTGATGTCGAGGCGCC 62.089 60.000 21.89 21.89 33.39 6.53
266 267 4.147449 CCTGATGTCGAGGCGCCA 62.147 66.667 31.54 7.75 0.00 5.69
267 268 2.887568 CTGATGTCGAGGCGCCAC 60.888 66.667 31.54 23.03 0.00 5.01
268 269 4.794439 TGATGTCGAGGCGCCACG 62.794 66.667 35.97 35.97 0.00 4.94
269 270 4.492160 GATGTCGAGGCGCCACGA 62.492 66.667 39.10 39.10 36.77 4.35
270 271 3.774959 GATGTCGAGGCGCCACGAT 62.775 63.158 42.90 31.90 40.63 3.73
271 272 3.371097 ATGTCGAGGCGCCACGATT 62.371 57.895 42.90 32.03 40.63 3.34
272 273 3.255379 GTCGAGGCGCCACGATTC 61.255 66.667 42.90 30.48 40.63 2.52
273 274 4.508128 TCGAGGCGCCACGATTCC 62.508 66.667 39.10 13.72 34.45 3.01
277 278 4.796495 GGCGCCACGATTCCCCTT 62.796 66.667 24.80 0.00 0.00 3.95
278 279 3.202706 GCGCCACGATTCCCCTTC 61.203 66.667 0.00 0.00 0.00 3.46
279 280 2.513897 CGCCACGATTCCCCTTCC 60.514 66.667 0.00 0.00 0.00 3.46
280 281 2.513897 GCCACGATTCCCCTTCCG 60.514 66.667 0.00 0.00 0.00 4.30
281 282 2.189521 CCACGATTCCCCTTCCGG 59.810 66.667 0.00 0.00 0.00 5.14
282 283 2.666098 CCACGATTCCCCTTCCGGT 61.666 63.158 0.00 0.00 0.00 5.28
283 284 1.153429 CACGATTCCCCTTCCGGTC 60.153 63.158 0.00 0.00 0.00 4.79
284 285 1.611261 ACGATTCCCCTTCCGGTCA 60.611 57.895 0.00 0.00 0.00 4.02
285 286 1.153429 CGATTCCCCTTCCGGTCAC 60.153 63.158 0.00 0.00 0.00 3.67
286 287 1.614241 CGATTCCCCTTCCGGTCACT 61.614 60.000 0.00 0.00 0.00 3.41
287 288 0.107654 GATTCCCCTTCCGGTCACTG 60.108 60.000 0.00 0.00 0.00 3.66
288 289 0.840722 ATTCCCCTTCCGGTCACTGT 60.841 55.000 0.00 0.00 0.00 3.55
289 290 1.477685 TTCCCCTTCCGGTCACTGTC 61.478 60.000 0.00 0.00 0.00 3.51
290 291 2.663196 CCCTTCCGGTCACTGTCC 59.337 66.667 0.00 0.00 0.00 4.02
291 292 2.261671 CCTTCCGGTCACTGTCCG 59.738 66.667 0.00 7.65 46.49 4.79
292 293 2.571216 CCTTCCGGTCACTGTCCGT 61.571 63.158 12.78 0.00 45.63 4.69
293 294 1.080705 CTTCCGGTCACTGTCCGTC 60.081 63.158 12.78 0.00 45.63 4.79
294 295 1.802337 CTTCCGGTCACTGTCCGTCA 61.802 60.000 12.78 0.00 45.63 4.35
296 297 2.265904 CCGGTCACTGTCCGTCAGA 61.266 63.158 12.78 0.00 46.27 3.27
297 298 1.210413 CGGTCACTGTCCGTCAGAG 59.790 63.158 6.56 4.39 46.27 3.35
298 299 1.080434 GGTCACTGTCCGTCAGAGC 60.080 63.158 10.98 0.00 46.27 4.09
299 300 1.442857 GTCACTGTCCGTCAGAGCG 60.443 63.158 10.98 0.00 46.27 5.03
315 316 4.918201 CGGCGGGCAGAAGGGATC 62.918 72.222 0.00 0.00 0.00 3.36
316 317 4.570874 GGCGGGCAGAAGGGATCC 62.571 72.222 1.92 1.92 0.00 3.36
317 318 4.918201 GCGGGCAGAAGGGATCCG 62.918 72.222 5.45 0.00 43.13 4.18
318 319 3.154473 CGGGCAGAAGGGATCCGA 61.154 66.667 5.45 0.00 42.94 4.55
319 320 2.731571 CGGGCAGAAGGGATCCGAA 61.732 63.158 5.45 0.00 42.94 4.30
320 321 1.839894 GGGCAGAAGGGATCCGAAT 59.160 57.895 5.45 0.00 0.00 3.34
321 322 0.183731 GGGCAGAAGGGATCCGAATT 59.816 55.000 5.45 0.00 0.00 2.17
322 323 1.598882 GGCAGAAGGGATCCGAATTC 58.401 55.000 5.45 9.98 0.00 2.17
323 324 1.134098 GGCAGAAGGGATCCGAATTCA 60.134 52.381 19.39 0.00 0.00 2.57
324 325 1.943340 GCAGAAGGGATCCGAATTCAC 59.057 52.381 19.39 10.85 0.00 3.18
325 326 2.680805 GCAGAAGGGATCCGAATTCACA 60.681 50.000 19.39 0.00 0.00 3.58
326 327 3.201290 CAGAAGGGATCCGAATTCACAG 58.799 50.000 19.39 9.29 0.00 3.66
327 328 2.171448 AGAAGGGATCCGAATTCACAGG 59.829 50.000 19.39 0.00 0.00 4.00
328 329 0.181350 AGGGATCCGAATTCACAGGC 59.819 55.000 5.45 0.00 0.00 4.85
329 330 0.181350 GGGATCCGAATTCACAGGCT 59.819 55.000 5.45 0.00 0.00 4.58
330 331 1.587547 GGATCCGAATTCACAGGCTC 58.412 55.000 6.22 0.08 0.00 4.70
331 332 1.212616 GATCCGAATTCACAGGCTCG 58.787 55.000 6.22 0.00 0.00 5.03
332 333 0.824109 ATCCGAATTCACAGGCTCGA 59.176 50.000 6.22 0.00 33.13 4.04
333 334 0.108804 TCCGAATTCACAGGCTCGAC 60.109 55.000 6.22 0.00 33.13 4.20
334 335 1.413767 CCGAATTCACAGGCTCGACG 61.414 60.000 6.22 0.00 33.13 5.12
335 336 1.413767 CGAATTCACAGGCTCGACGG 61.414 60.000 6.22 0.00 33.13 4.79
336 337 1.696832 GAATTCACAGGCTCGACGGC 61.697 60.000 0.00 0.00 38.75 5.68
337 338 2.449031 AATTCACAGGCTCGACGGCA 62.449 55.000 9.90 0.00 41.46 5.69
338 339 2.842394 ATTCACAGGCTCGACGGCAG 62.842 60.000 9.90 5.54 41.46 4.85
339 340 4.056125 CACAGGCTCGACGGCAGA 62.056 66.667 9.90 0.00 41.46 4.26
340 341 3.753434 ACAGGCTCGACGGCAGAG 61.753 66.667 5.85 5.85 41.46 3.35
341 342 3.443925 CAGGCTCGACGGCAGAGA 61.444 66.667 13.26 0.00 41.46 3.10
342 343 2.441164 AGGCTCGACGGCAGAGAT 60.441 61.111 13.26 0.00 41.46 2.75
343 344 2.026879 GGCTCGACGGCAGAGATC 59.973 66.667 13.26 2.29 37.93 2.75
344 345 2.352915 GCTCGACGGCAGAGATCG 60.353 66.667 13.26 0.00 37.93 3.69
345 346 2.824901 GCTCGACGGCAGAGATCGA 61.825 63.158 13.26 3.37 42.27 3.59
346 347 3.410958 TCGACGGCAGAGATCGAG 58.589 61.111 0.00 0.00 39.80 4.04
347 348 2.180862 TCGACGGCAGAGATCGAGG 61.181 63.158 0.00 0.00 39.80 4.63
348 349 2.725008 GACGGCAGAGATCGAGGG 59.275 66.667 0.00 0.00 0.00 4.30
349 350 1.824329 GACGGCAGAGATCGAGGGA 60.824 63.158 0.00 0.00 0.00 4.20
350 351 1.379977 ACGGCAGAGATCGAGGGAA 60.380 57.895 0.00 0.00 0.00 3.97
351 352 1.361993 CGGCAGAGATCGAGGGAAG 59.638 63.158 0.00 0.00 0.00 3.46
352 353 1.745264 GGCAGAGATCGAGGGAAGG 59.255 63.158 0.00 0.00 0.00 3.46
353 354 0.757188 GGCAGAGATCGAGGGAAGGA 60.757 60.000 0.00 0.00 0.00 3.36
354 355 1.115467 GCAGAGATCGAGGGAAGGAA 58.885 55.000 0.00 0.00 0.00 3.36
355 356 1.068434 GCAGAGATCGAGGGAAGGAAG 59.932 57.143 0.00 0.00 0.00 3.46
356 357 1.686052 CAGAGATCGAGGGAAGGAAGG 59.314 57.143 0.00 0.00 0.00 3.46
357 358 0.391228 GAGATCGAGGGAAGGAAGGC 59.609 60.000 0.00 0.00 0.00 4.35
358 359 0.031616 AGATCGAGGGAAGGAAGGCT 60.032 55.000 0.00 0.00 0.00 4.58
359 360 0.833949 GATCGAGGGAAGGAAGGCTT 59.166 55.000 0.00 0.00 0.00 4.35
360 361 0.833949 ATCGAGGGAAGGAAGGCTTC 59.166 55.000 18.98 18.98 0.00 3.86
361 362 0.544357 TCGAGGGAAGGAAGGCTTCA 60.544 55.000 27.17 1.81 32.84 3.02
362 363 0.391793 CGAGGGAAGGAAGGCTTCAC 60.392 60.000 27.17 16.72 34.65 3.18
363 364 0.693049 GAGGGAAGGAAGGCTTCACA 59.307 55.000 27.17 0.00 36.74 3.58
364 365 1.283321 GAGGGAAGGAAGGCTTCACAT 59.717 52.381 27.17 13.22 36.74 3.21
365 366 2.505819 GAGGGAAGGAAGGCTTCACATA 59.494 50.000 27.17 0.00 36.74 2.29
366 367 2.507471 AGGGAAGGAAGGCTTCACATAG 59.493 50.000 27.17 0.00 36.74 2.23
367 368 2.239907 GGGAAGGAAGGCTTCACATAGT 59.760 50.000 27.17 6.44 34.59 2.12
368 369 3.536570 GGAAGGAAGGCTTCACATAGTC 58.463 50.000 27.17 13.93 32.84 2.59
374 375 2.119495 AGGCTTCACATAGTCGGGATT 58.881 47.619 0.00 0.00 0.00 3.01
383 384 1.874129 TAGTCGGGATTGGACCATGT 58.126 50.000 0.00 0.00 34.97 3.21
396 397 0.394938 ACCATGTAACTGACACGCCA 59.605 50.000 0.00 0.00 42.17 5.69
407 408 0.521735 GACACGCCAATGGTCTTTCC 59.478 55.000 0.00 0.00 0.00 3.13
408 409 0.110486 ACACGCCAATGGTCTTTCCT 59.890 50.000 0.00 0.00 37.07 3.36
411 415 2.817258 CACGCCAATGGTCTTTCCTTAA 59.183 45.455 0.00 0.00 37.07 1.85
414 418 4.638865 ACGCCAATGGTCTTTCCTTAATAC 59.361 41.667 0.00 0.00 37.07 1.89
613 625 7.939039 TCAGAGCCAAAGAAAAGAATCTTCTTA 59.061 33.333 5.65 0.00 46.22 2.10
649 661 6.352565 CCCTCTCAAGTCATACTCCAGAAATT 60.353 42.308 0.00 0.00 0.00 1.82
661 681 3.146066 TCCAGAAATTACCACACTGCAC 58.854 45.455 0.00 0.00 0.00 4.57
662 682 3.149196 CCAGAAATTACCACACTGCACT 58.851 45.455 0.00 0.00 0.00 4.40
663 683 3.058016 CCAGAAATTACCACACTGCACTG 60.058 47.826 0.00 0.00 0.00 3.66
664 684 3.058016 CAGAAATTACCACACTGCACTGG 60.058 47.826 0.00 0.00 0.00 4.00
665 685 1.247567 AATTACCACACTGCACTGGC 58.752 50.000 0.00 0.00 41.68 4.85
675 695 3.583383 GCACTGGCATCACACCTC 58.417 61.111 0.00 0.00 40.72 3.85
676 696 1.002868 GCACTGGCATCACACCTCT 60.003 57.895 0.00 0.00 40.72 3.69
677 697 0.250234 GCACTGGCATCACACCTCTA 59.750 55.000 0.00 0.00 40.72 2.43
678 698 1.741732 GCACTGGCATCACACCTCTAG 60.742 57.143 0.00 0.00 40.72 2.43
679 699 1.552337 CACTGGCATCACACCTCTAGT 59.448 52.381 0.00 0.00 0.00 2.57
680 700 2.760650 CACTGGCATCACACCTCTAGTA 59.239 50.000 0.00 0.00 0.00 1.82
681 701 2.761208 ACTGGCATCACACCTCTAGTAC 59.239 50.000 0.00 0.00 0.00 2.73
692 713 5.017490 ACACCTCTAGTACTAACTGCACAT 58.983 41.667 3.76 0.00 36.36 3.21
693 714 5.125739 ACACCTCTAGTACTAACTGCACATC 59.874 44.000 3.76 0.00 36.36 3.06
701 722 0.242555 TAACTGCACATCGCTCGTCA 59.757 50.000 0.00 0.00 43.06 4.35
703 724 0.455815 ACTGCACATCGCTCGTCATA 59.544 50.000 0.00 0.00 43.06 2.15
704 725 1.067669 ACTGCACATCGCTCGTCATAT 59.932 47.619 0.00 0.00 43.06 1.78
717 738 7.915508 TCGCTCGTCATATTTTGTTGATAAAT 58.084 30.769 0.00 0.00 0.00 1.40
723 744 9.106286 CGTCATATTTTGTTGATAAATGGATCG 57.894 33.333 0.00 0.00 0.00 3.69
729 750 8.737168 TTTTGTTGATAAATGGATCGATCTCT 57.263 30.769 23.96 9.61 0.00 3.10
730 751 7.953158 TTGTTGATAAATGGATCGATCTCTC 57.047 36.000 23.96 9.10 0.00 3.20
731 752 6.459066 TGTTGATAAATGGATCGATCTCTCC 58.541 40.000 23.96 10.54 0.00 3.71
733 754 6.522625 TGATAAATGGATCGATCTCTCCTC 57.477 41.667 23.96 14.11 32.47 3.71
734 755 5.420421 TGATAAATGGATCGATCTCTCCTCC 59.580 44.000 23.96 8.65 32.47 4.30
735 756 2.988636 ATGGATCGATCTCTCCTCCA 57.011 50.000 23.96 14.24 40.12 3.86
738 759 3.161067 TGGATCGATCTCTCCTCCATTC 58.839 50.000 23.96 4.36 31.19 2.67
739 760 2.495669 GGATCGATCTCTCCTCCATTCC 59.504 54.545 23.96 1.09 0.00 3.01
740 761 2.755952 TCGATCTCTCCTCCATTCCA 57.244 50.000 0.00 0.00 0.00 3.53
741 762 3.251016 TCGATCTCTCCTCCATTCCAT 57.749 47.619 0.00 0.00 0.00 3.41
742 763 3.581101 TCGATCTCTCCTCCATTCCATT 58.419 45.455 0.00 0.00 0.00 3.16
743 764 3.323115 TCGATCTCTCCTCCATTCCATTG 59.677 47.826 0.00 0.00 0.00 2.82
744 765 3.323115 CGATCTCTCCTCCATTCCATTGA 59.677 47.826 0.00 0.00 0.00 2.57
751 772 2.489329 CCTCCATTCCATTGACACACAC 59.511 50.000 0.00 0.00 0.00 3.82
757 778 1.202758 TCCATTGACACACACCACTCC 60.203 52.381 0.00 0.00 0.00 3.85
761 782 0.177836 TGACACACACCACTCCACTG 59.822 55.000 0.00 0.00 0.00 3.66
764 785 0.392706 CACACACCACTCCACTGCTA 59.607 55.000 0.00 0.00 0.00 3.49
768 789 1.186200 CACCACTCCACTGCTAGCTA 58.814 55.000 17.23 1.31 0.00 3.32
781 802 2.562738 TGCTAGCTACTGAACTGAAGCA 59.437 45.455 17.23 0.00 37.44 3.91
786 807 2.351111 GCTACTGAACTGAAGCAGCATC 59.649 50.000 0.00 0.00 35.57 3.91
791 812 0.957395 AACTGAAGCAGCATCCGGTG 60.957 55.000 0.00 0.00 43.71 4.94
1170 1191 4.473520 ATCTCGCAGGCCAACCGG 62.474 66.667 5.01 0.00 42.76 5.28
1584 1605 2.028484 GTTGTCGTGGCCGAGACA 59.972 61.111 23.86 23.86 45.26 3.41
1615 1636 2.780693 CTGGGGAGGACTGGGAGA 59.219 66.667 0.00 0.00 0.00 3.71
1623 1644 4.593864 GACTGGGAGATCGGCGCC 62.594 72.222 19.07 19.07 35.43 6.53
1749 1770 0.452585 CCCTCTTCGACGAGAACCTC 59.547 60.000 19.69 0.00 34.66 3.85
2178 2199 4.843728 TGAACCTCTATTTTCGGAGCAAT 58.156 39.130 0.00 0.00 0.00 3.56
2246 2267 3.394606 ACCACTGTTGACCCAAGTAAGAT 59.605 43.478 0.00 0.00 0.00 2.40
2253 2274 6.601332 TGTTGACCCAAGTAAGATTTCTTCT 58.399 36.000 0.00 0.00 37.40 2.85
2255 2276 7.559897 TGTTGACCCAAGTAAGATTTCTTCTTT 59.440 33.333 0.00 0.00 42.15 2.52
2260 2281 7.880713 ACCCAAGTAAGATTTCTTCTTTCTCTC 59.119 37.037 0.00 0.00 42.15 3.20
2261 2282 8.100164 CCCAAGTAAGATTTCTTCTTTCTCTCT 58.900 37.037 0.00 0.00 42.15 3.10
2262 2283 9.150348 CCAAGTAAGATTTCTTCTTTCTCTCTC 57.850 37.037 0.00 0.00 42.15 3.20
2263 2284 9.703892 CAAGTAAGATTTCTTCTTTCTCTCTCA 57.296 33.333 0.00 0.00 42.15 3.27
2319 2346 2.086054 AGTGTTTCAGCTGGATCGAC 57.914 50.000 15.13 0.39 0.00 4.20
2344 2374 2.850647 GTCTCTAATTACACGGCGACAC 59.149 50.000 16.62 0.00 0.00 3.67
2426 2461 3.048501 GCAAGAAGCAAGAAGACTTTGC 58.951 45.455 4.03 4.03 44.79 3.68
2529 2716 3.069443 ACCCTTAAGTTGTTGCATGGTTG 59.931 43.478 0.97 0.00 0.00 3.77
2589 2776 5.174943 GTCCTCTTGTTTGTTAAATTTGCGG 59.825 40.000 0.00 0.00 0.00 5.69
2594 2781 6.371825 TCTTGTTTGTTAAATTTGCGGGTTTT 59.628 30.769 0.00 0.00 0.00 2.43
2595 2782 5.869350 TGTTTGTTAAATTTGCGGGTTTTG 58.131 33.333 0.00 0.00 0.00 2.44
2606 2793 2.190161 GCGGGTTTTGACTGTTTGAAC 58.810 47.619 0.00 0.00 0.00 3.18
2609 2796 4.594136 CGGGTTTTGACTGTTTGAACTAC 58.406 43.478 0.00 0.00 0.00 2.73
2642 2830 2.278401 GGACGTGTCCGCGGATAC 60.278 66.667 36.71 36.71 40.36 2.24
2651 2870 1.134560 GTCCGCGGATACTTGAGAAGT 59.865 52.381 33.58 0.00 45.40 3.01
2720 3098 7.566658 AAATTTCTGATTTGGGGGATTAACA 57.433 32.000 0.00 0.00 0.00 2.41
2763 3141 7.262048 TCAAACACTTTGTCCCTCAAAATTAC 58.738 34.615 0.00 0.00 44.08 1.89
2766 3144 5.891551 ACACTTTGTCCCTCAAAATTACAGT 59.108 36.000 0.00 0.00 44.08 3.55
2810 3188 1.134753 TGTGGCTTGTGTTTTGCTCTG 59.865 47.619 0.00 0.00 0.00 3.35
2827 3205 1.620819 TCTGAGAAGGGCAACTCTCAC 59.379 52.381 7.96 0.00 35.64 3.51
2833 3211 1.986882 AGGGCAACTCTCACCAAAAG 58.013 50.000 0.00 0.00 0.00 2.27
2856 3234 1.761174 GAGACCAAACTGCCCCTCA 59.239 57.895 0.00 0.00 0.00 3.86
2912 3306 0.617413 CAGAATCAGTCCCACAGCCT 59.383 55.000 0.00 0.00 0.00 4.58
2932 3326 2.573462 CTCACCATCCCCTTCTCTTTCA 59.427 50.000 0.00 0.00 0.00 2.69
2933 3327 2.305927 TCACCATCCCCTTCTCTTTCAC 59.694 50.000 0.00 0.00 0.00 3.18
2954 3348 0.610232 GCTGGCACCAGAATCAACCT 60.610 55.000 20.92 0.00 46.30 3.50
2965 3359 0.392998 AATCAACCTGATTCGCCGCT 60.393 50.000 0.00 0.00 43.03 5.52
3016 3410 1.340405 GGTGAGCCTTGATGTGGTCAT 60.340 52.381 0.00 0.00 36.54 3.06
3065 3460 3.255888 CAGTAGTAGCCTTGTGTGTGAGA 59.744 47.826 0.00 0.00 0.00 3.27
3071 3466 1.543208 GCCTTGTGTGTGAGACCATGA 60.543 52.381 0.00 0.00 0.00 3.07
3115 3510 2.618053 CTTCTTCACCGCCTTCGTTAT 58.382 47.619 0.00 0.00 0.00 1.89
3127 3522 1.667724 CTTCGTTATTGAGCTGCCCAG 59.332 52.381 0.00 0.00 0.00 4.45
3168 3563 5.926214 CATGAACTCTCTATCATGGCTTG 57.074 43.478 7.66 0.00 45.82 4.01
3184 3579 1.981254 CTTGTGCATTTCGGCGAATT 58.019 45.000 24.33 17.17 36.28 2.17
3215 3610 0.647925 GCAGCTTCTTCGTCGAATCC 59.352 55.000 8.36 0.00 0.00 3.01
3279 3674 1.000827 TGGCAAGGCATAACACAAACG 60.001 47.619 0.00 0.00 0.00 3.60
3299 3694 2.159198 CGCCCTCTATGCTTGCAATTTT 60.159 45.455 0.00 0.00 0.00 1.82
3305 3700 7.524367 GCCCTCTATGCTTGCAATTTTGTATAT 60.524 37.037 0.00 0.00 0.00 0.86
3321 3716 7.894753 TTTGTATATGATTCCCATTGCTCAA 57.105 32.000 0.00 0.00 36.71 3.02
3337 3732 3.181496 TGCTCAAAACATTACACACGCAA 60.181 39.130 0.00 0.00 0.00 4.85
3379 3774 8.377799 TCTCTTGCAACACATGTATATGGATAT 58.622 33.333 0.00 0.00 38.66 1.63
3380 3775 8.552083 TCTTGCAACACATGTATATGGATATC 57.448 34.615 0.00 0.00 38.66 1.63
3381 3776 8.377799 TCTTGCAACACATGTATATGGATATCT 58.622 33.333 0.00 0.00 38.66 1.98
3382 3777 9.657419 CTTGCAACACATGTATATGGATATCTA 57.343 33.333 0.00 0.00 38.66 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.999046 ACCACTAGTAAAAACCGAGGTG 58.001 45.455 0.00 0.00 0.00 4.00
1 2 6.364568 AATACCACTAGTAAAAACCGAGGT 57.635 37.500 0.00 0.00 33.70 3.85
2 3 7.388500 TCAAAATACCACTAGTAAAAACCGAGG 59.612 37.037 0.00 0.00 33.70 4.63
3 4 8.225777 GTCAAAATACCACTAGTAAAAACCGAG 58.774 37.037 0.00 0.00 33.70 4.63
4 5 7.714377 TGTCAAAATACCACTAGTAAAAACCGA 59.286 33.333 0.00 0.00 33.70 4.69
5 6 7.863666 TGTCAAAATACCACTAGTAAAAACCG 58.136 34.615 0.00 0.00 33.70 4.44
6 7 9.620660 CATGTCAAAATACCACTAGTAAAAACC 57.379 33.333 0.00 0.00 33.70 3.27
10 11 8.714179 CGAACATGTCAAAATACCACTAGTAAA 58.286 33.333 0.00 0.00 33.70 2.01
11 12 7.332430 CCGAACATGTCAAAATACCACTAGTAA 59.668 37.037 0.00 0.00 33.70 2.24
12 13 6.814644 CCGAACATGTCAAAATACCACTAGTA 59.185 38.462 0.00 0.00 34.76 1.82
13 14 5.642063 CCGAACATGTCAAAATACCACTAGT 59.358 40.000 0.00 0.00 0.00 2.57
14 15 5.642063 ACCGAACATGTCAAAATACCACTAG 59.358 40.000 0.00 0.00 0.00 2.57
15 16 5.553123 ACCGAACATGTCAAAATACCACTA 58.447 37.500 0.00 0.00 0.00 2.74
16 17 4.394729 ACCGAACATGTCAAAATACCACT 58.605 39.130 0.00 0.00 0.00 4.00
17 18 4.759516 ACCGAACATGTCAAAATACCAC 57.240 40.909 0.00 0.00 0.00 4.16
18 19 5.776173 AAACCGAACATGTCAAAATACCA 57.224 34.783 0.00 0.00 0.00 3.25
19 20 6.143278 GTGAAAACCGAACATGTCAAAATACC 59.857 38.462 0.00 0.00 0.00 2.73
20 21 6.915843 AGTGAAAACCGAACATGTCAAAATAC 59.084 34.615 0.00 0.00 0.00 1.89
21 22 7.033530 AGTGAAAACCGAACATGTCAAAATA 57.966 32.000 0.00 0.00 0.00 1.40
22 23 5.901552 AGTGAAAACCGAACATGTCAAAAT 58.098 33.333 0.00 0.00 0.00 1.82
23 24 5.317733 AGTGAAAACCGAACATGTCAAAA 57.682 34.783 0.00 0.00 0.00 2.44
24 25 4.974368 AGTGAAAACCGAACATGTCAAA 57.026 36.364 0.00 0.00 0.00 2.69
25 26 6.434596 CATTAGTGAAAACCGAACATGTCAA 58.565 36.000 0.00 0.00 0.00 3.18
26 27 5.049060 CCATTAGTGAAAACCGAACATGTCA 60.049 40.000 0.00 0.00 0.00 3.58
27 28 5.048991 ACCATTAGTGAAAACCGAACATGTC 60.049 40.000 0.00 0.00 0.00 3.06
28 29 4.825085 ACCATTAGTGAAAACCGAACATGT 59.175 37.500 0.00 0.00 0.00 3.21
29 30 5.371115 ACCATTAGTGAAAACCGAACATG 57.629 39.130 0.00 0.00 0.00 3.21
30 31 7.696992 AATACCATTAGTGAAAACCGAACAT 57.303 32.000 0.00 0.00 0.00 2.71
31 32 7.513371 AAATACCATTAGTGAAAACCGAACA 57.487 32.000 0.00 0.00 0.00 3.18
32 33 8.179615 CCTAAATACCATTAGTGAAAACCGAAC 58.820 37.037 0.00 0.00 32.16 3.95
33 34 7.148205 GCCTAAATACCATTAGTGAAAACCGAA 60.148 37.037 0.00 0.00 32.16 4.30
34 35 6.316890 GCCTAAATACCATTAGTGAAAACCGA 59.683 38.462 0.00 0.00 32.16 4.69
35 36 6.317893 AGCCTAAATACCATTAGTGAAAACCG 59.682 38.462 0.00 0.00 32.16 4.44
36 37 7.640597 AGCCTAAATACCATTAGTGAAAACC 57.359 36.000 0.00 0.00 32.16 3.27
39 40 9.569122 GGAATAGCCTAAATACCATTAGTGAAA 57.431 33.333 0.00 0.00 32.16 2.69
40 41 8.161425 GGGAATAGCCTAAATACCATTAGTGAA 58.839 37.037 0.00 0.00 36.66 3.18
41 42 7.516209 AGGGAATAGCCTAAATACCATTAGTGA 59.484 37.037 0.00 0.00 36.66 3.41
42 43 7.690256 AGGGAATAGCCTAAATACCATTAGTG 58.310 38.462 0.00 0.00 36.66 2.74
43 44 7.037514 GGAGGGAATAGCCTAAATACCATTAGT 60.038 40.741 0.00 0.00 36.66 2.24
44 45 7.037586 TGGAGGGAATAGCCTAAATACCATTAG 60.038 40.741 0.00 0.00 36.66 1.73
45 46 6.795507 TGGAGGGAATAGCCTAAATACCATTA 59.204 38.462 0.00 0.00 36.66 1.90
46 47 5.615261 TGGAGGGAATAGCCTAAATACCATT 59.385 40.000 0.00 0.00 36.66 3.16
47 48 5.170198 TGGAGGGAATAGCCTAAATACCAT 58.830 41.667 0.00 0.00 36.66 3.55
48 49 4.572978 TGGAGGGAATAGCCTAAATACCA 58.427 43.478 0.00 0.00 36.66 3.25
49 50 5.309806 TCTTGGAGGGAATAGCCTAAATACC 59.690 44.000 0.00 0.00 36.66 2.73
50 51 6.435292 TCTTGGAGGGAATAGCCTAAATAC 57.565 41.667 0.00 0.00 36.66 1.89
51 52 7.460214 TTTCTTGGAGGGAATAGCCTAAATA 57.540 36.000 0.00 0.00 36.66 1.40
52 53 5.994416 TTCTTGGAGGGAATAGCCTAAAT 57.006 39.130 0.00 0.00 36.66 1.40
53 54 5.789574 TTTCTTGGAGGGAATAGCCTAAA 57.210 39.130 0.00 0.00 36.66 1.85
54 55 5.789574 TTTTCTTGGAGGGAATAGCCTAA 57.210 39.130 0.00 0.00 36.66 2.69
55 56 5.506708 GTTTTTCTTGGAGGGAATAGCCTA 58.493 41.667 0.00 0.00 36.66 3.93
56 57 4.344978 GTTTTTCTTGGAGGGAATAGCCT 58.655 43.478 0.00 0.00 36.66 4.58
57 58 3.447586 GGTTTTTCTTGGAGGGAATAGCC 59.552 47.826 0.00 0.00 0.00 3.93
58 59 3.447586 GGGTTTTTCTTGGAGGGAATAGC 59.552 47.826 0.00 0.00 0.00 2.97
59 60 4.935578 AGGGTTTTTCTTGGAGGGAATAG 58.064 43.478 0.00 0.00 0.00 1.73
60 61 6.471942 TTAGGGTTTTTCTTGGAGGGAATA 57.528 37.500 0.00 0.00 0.00 1.75
61 62 3.923273 AGGGTTTTTCTTGGAGGGAAT 57.077 42.857 0.00 0.00 0.00 3.01
62 63 4.817874 TTAGGGTTTTTCTTGGAGGGAA 57.182 40.909 0.00 0.00 0.00 3.97
63 64 4.169264 AGTTTAGGGTTTTTCTTGGAGGGA 59.831 41.667 0.00 0.00 0.00 4.20
64 65 4.480115 AGTTTAGGGTTTTTCTTGGAGGG 58.520 43.478 0.00 0.00 0.00 4.30
65 66 4.215613 CGAGTTTAGGGTTTTTCTTGGAGG 59.784 45.833 0.00 0.00 0.00 4.30
66 67 4.215613 CCGAGTTTAGGGTTTTTCTTGGAG 59.784 45.833 0.00 0.00 0.00 3.86
67 68 4.139038 CCGAGTTTAGGGTTTTTCTTGGA 58.861 43.478 0.00 0.00 0.00 3.53
68 69 3.305131 GCCGAGTTTAGGGTTTTTCTTGG 60.305 47.826 0.00 0.00 0.00 3.61
69 70 3.316868 TGCCGAGTTTAGGGTTTTTCTTG 59.683 43.478 0.00 0.00 0.00 3.02
70 71 3.317149 GTGCCGAGTTTAGGGTTTTTCTT 59.683 43.478 0.00 0.00 0.00 2.52
71 72 2.882761 GTGCCGAGTTTAGGGTTTTTCT 59.117 45.455 0.00 0.00 0.00 2.52
72 73 2.030540 GGTGCCGAGTTTAGGGTTTTTC 60.031 50.000 0.00 0.00 0.00 2.29
73 74 1.958579 GGTGCCGAGTTTAGGGTTTTT 59.041 47.619 0.00 0.00 0.00 1.94
74 75 1.612676 GGTGCCGAGTTTAGGGTTTT 58.387 50.000 0.00 0.00 0.00 2.43
75 76 0.251033 GGGTGCCGAGTTTAGGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
76 77 1.377612 GGGTGCCGAGTTTAGGGTT 59.622 57.895 0.00 0.00 0.00 4.11
77 78 2.599757 GGGGTGCCGAGTTTAGGGT 61.600 63.158 0.00 0.00 0.00 4.34
78 79 2.271173 GGGGTGCCGAGTTTAGGG 59.729 66.667 0.00 0.00 0.00 3.53
79 80 2.125269 CGGGGTGCCGAGTTTAGG 60.125 66.667 0.00 0.00 34.88 2.69
80 81 2.975536 TCGGGGTGCCGAGTTTAG 59.024 61.111 0.00 0.00 37.29 1.85
87 88 4.760047 CAACTCCTCGGGGTGCCG 62.760 72.222 0.00 0.00 0.00 5.69
88 89 3.319198 TCAACTCCTCGGGGTGCC 61.319 66.667 0.00 0.00 0.00 5.01
89 90 2.047179 GTCAACTCCTCGGGGTGC 60.047 66.667 0.00 0.00 0.00 5.01
90 91 0.900647 AGAGTCAACTCCTCGGGGTG 60.901 60.000 0.00 0.00 43.88 4.61
91 92 0.702902 TAGAGTCAACTCCTCGGGGT 59.297 55.000 0.00 0.00 43.88 4.95
92 93 1.104630 GTAGAGTCAACTCCTCGGGG 58.895 60.000 0.00 0.00 43.88 5.73
93 94 1.473278 GTGTAGAGTCAACTCCTCGGG 59.527 57.143 6.54 0.00 43.88 5.14
94 95 1.473278 GGTGTAGAGTCAACTCCTCGG 59.527 57.143 6.54 0.00 43.88 4.63
95 96 1.130749 CGGTGTAGAGTCAACTCCTCG 59.869 57.143 6.54 1.35 43.88 4.63
96 97 2.434428 TCGGTGTAGAGTCAACTCCTC 58.566 52.381 6.54 1.68 43.88 3.71
97 98 2.581216 TCGGTGTAGAGTCAACTCCT 57.419 50.000 6.54 0.00 43.88 3.69
98 99 2.094649 CCTTCGGTGTAGAGTCAACTCC 60.095 54.545 6.54 0.00 43.88 3.85
99 100 2.094649 CCCTTCGGTGTAGAGTCAACTC 60.095 54.545 1.79 1.79 43.17 3.01
100 101 1.893801 CCCTTCGGTGTAGAGTCAACT 59.106 52.381 0.00 0.00 0.00 3.16
101 102 1.617357 ACCCTTCGGTGTAGAGTCAAC 59.383 52.381 0.00 0.00 42.48 3.18
102 103 1.891150 GACCCTTCGGTGTAGAGTCAA 59.109 52.381 0.00 0.00 44.88 3.18
103 104 1.202964 TGACCCTTCGGTGTAGAGTCA 60.203 52.381 0.00 0.00 44.88 3.41
104 105 1.473278 CTGACCCTTCGGTGTAGAGTC 59.527 57.143 0.00 0.00 44.88 3.36
105 106 1.203025 ACTGACCCTTCGGTGTAGAGT 60.203 52.381 0.00 0.00 44.88 3.24
106 107 1.546961 ACTGACCCTTCGGTGTAGAG 58.453 55.000 0.00 0.00 44.88 2.43
107 108 2.005370 AACTGACCCTTCGGTGTAGA 57.995 50.000 0.00 0.00 44.88 2.59
108 109 2.833631 AAACTGACCCTTCGGTGTAG 57.166 50.000 0.00 0.00 44.88 2.74
109 110 4.322953 GGATTAAACTGACCCTTCGGTGTA 60.323 45.833 0.00 0.00 44.88 2.90
110 111 3.558533 GGATTAAACTGACCCTTCGGTGT 60.559 47.826 0.00 0.00 44.88 4.16
111 112 3.007635 GGATTAAACTGACCCTTCGGTG 58.992 50.000 0.00 0.00 44.88 4.94
113 114 2.277084 CGGATTAAACTGACCCTTCGG 58.723 52.381 0.00 0.00 0.00 4.30
114 115 2.928116 GACGGATTAAACTGACCCTTCG 59.072 50.000 0.00 0.00 0.00 3.79
115 116 3.268330 GGACGGATTAAACTGACCCTTC 58.732 50.000 0.00 0.00 0.00 3.46
116 117 2.026542 GGGACGGATTAAACTGACCCTT 60.027 50.000 20.04 0.00 43.91 3.95
117 118 1.558294 GGGACGGATTAAACTGACCCT 59.442 52.381 20.04 0.00 43.91 4.34
118 119 2.034104 GGGACGGATTAAACTGACCC 57.966 55.000 14.52 14.52 41.91 4.46
133 134 1.525619 CTCAAGTTCGTTTGTCGGGAC 59.474 52.381 0.00 0.00 40.32 4.46
134 135 1.539496 CCTCAAGTTCGTTTGTCGGGA 60.539 52.381 0.00 0.00 40.32 5.14
135 136 0.865769 CCTCAAGTTCGTTTGTCGGG 59.134 55.000 0.00 0.00 40.32 5.14
136 137 1.792949 CTCCTCAAGTTCGTTTGTCGG 59.207 52.381 0.00 0.00 40.32 4.79
137 138 1.792949 CCTCCTCAAGTTCGTTTGTCG 59.207 52.381 0.00 0.00 41.41 4.35
138 139 3.107642 TCCTCCTCAAGTTCGTTTGTC 57.892 47.619 0.00 0.00 0.00 3.18
139 140 3.665190 GATCCTCCTCAAGTTCGTTTGT 58.335 45.455 0.00 0.00 0.00 2.83
140 141 2.668457 CGATCCTCCTCAAGTTCGTTTG 59.332 50.000 0.00 0.00 0.00 2.93
141 142 2.353803 CCGATCCTCCTCAAGTTCGTTT 60.354 50.000 0.00 0.00 30.69 3.60
142 143 1.204941 CCGATCCTCCTCAAGTTCGTT 59.795 52.381 0.00 0.00 30.69 3.85
143 144 0.818296 CCGATCCTCCTCAAGTTCGT 59.182 55.000 0.00 0.00 30.69 3.85
144 145 1.066303 CTCCGATCCTCCTCAAGTTCG 59.934 57.143 0.00 0.00 0.00 3.95
145 146 2.104170 ACTCCGATCCTCCTCAAGTTC 58.896 52.381 0.00 0.00 0.00 3.01
146 147 2.239681 ACTCCGATCCTCCTCAAGTT 57.760 50.000 0.00 0.00 0.00 2.66
147 148 2.104170 GAACTCCGATCCTCCTCAAGT 58.896 52.381 0.00 0.00 0.00 3.16
148 149 1.066303 CGAACTCCGATCCTCCTCAAG 59.934 57.143 0.00 0.00 41.76 3.02
149 150 1.103803 CGAACTCCGATCCTCCTCAA 58.896 55.000 0.00 0.00 41.76 3.02
150 151 0.752009 CCGAACTCCGATCCTCCTCA 60.752 60.000 0.00 0.00 41.76 3.86
151 152 0.465824 TCCGAACTCCGATCCTCCTC 60.466 60.000 0.00 0.00 41.76 3.71
152 153 0.033405 TTCCGAACTCCGATCCTCCT 60.033 55.000 0.00 0.00 41.76 3.69
153 154 0.386113 CTTCCGAACTCCGATCCTCC 59.614 60.000 0.00 0.00 41.76 4.30
154 155 1.065851 GTCTTCCGAACTCCGATCCTC 59.934 57.143 0.00 0.00 41.76 3.71
155 156 1.104630 GTCTTCCGAACTCCGATCCT 58.895 55.000 0.00 0.00 41.76 3.24
156 157 0.102663 GGTCTTCCGAACTCCGATCC 59.897 60.000 0.00 0.00 41.76 3.36
157 158 3.644774 GGTCTTCCGAACTCCGATC 57.355 57.895 0.00 0.00 41.76 3.69
168 169 3.004419 CCTTTTCTTTTGGTCGGTCTTCC 59.996 47.826 0.00 0.00 0.00 3.46
169 170 3.630769 ACCTTTTCTTTTGGTCGGTCTTC 59.369 43.478 0.00 0.00 0.00 2.87
170 171 3.380320 CACCTTTTCTTTTGGTCGGTCTT 59.620 43.478 0.00 0.00 30.72 3.01
171 172 2.949644 CACCTTTTCTTTTGGTCGGTCT 59.050 45.455 0.00 0.00 30.72 3.85
172 173 2.686405 ACACCTTTTCTTTTGGTCGGTC 59.314 45.455 0.00 0.00 30.72 4.79
173 174 2.730382 ACACCTTTTCTTTTGGTCGGT 58.270 42.857 0.00 0.00 30.72 4.69
174 175 3.443976 CAACACCTTTTCTTTTGGTCGG 58.556 45.455 0.00 0.00 30.72 4.79
175 176 2.857748 GCAACACCTTTTCTTTTGGTCG 59.142 45.455 0.00 0.00 30.72 4.79
176 177 3.194861 GGCAACACCTTTTCTTTTGGTC 58.805 45.455 0.00 0.00 34.51 4.02
177 178 2.569404 TGGCAACACCTTTTCTTTTGGT 59.431 40.909 0.00 0.00 46.17 3.67
178 179 3.258971 TGGCAACACCTTTTCTTTTGG 57.741 42.857 0.00 0.00 46.17 3.28
190 191 2.915220 CGCTAGGACGAATGGCAACAC 61.915 57.143 0.00 0.00 43.52 3.32
191 192 0.739462 CGCTAGGACGAATGGCAACA 60.739 55.000 0.00 0.00 44.61 3.33
192 193 0.739813 ACGCTAGGACGAATGGCAAC 60.740 55.000 0.00 0.00 36.70 4.17
193 194 0.459585 GACGCTAGGACGAATGGCAA 60.460 55.000 0.00 0.00 36.70 4.52
194 195 1.141019 GACGCTAGGACGAATGGCA 59.859 57.895 0.00 0.00 36.70 4.92
195 196 1.944676 CGACGCTAGGACGAATGGC 60.945 63.158 0.00 0.00 36.70 4.40
196 197 0.311165 ATCGACGCTAGGACGAATGG 59.689 55.000 9.02 0.00 39.38 3.16
197 198 1.663445 GGATCGACGCTAGGACGAATG 60.663 57.143 9.02 0.00 39.38 2.67
198 199 0.592148 GGATCGACGCTAGGACGAAT 59.408 55.000 9.02 1.29 39.38 3.34
199 200 0.463295 AGGATCGACGCTAGGACGAA 60.463 55.000 9.02 0.00 39.38 3.85
200 201 1.145598 AGGATCGACGCTAGGACGA 59.854 57.895 7.83 7.83 40.18 4.20
201 202 1.280142 CAGGATCGACGCTAGGACG 59.720 63.158 0.00 0.00 39.50 4.79
202 203 1.008309 GCAGGATCGACGCTAGGAC 60.008 63.158 0.00 0.00 0.00 3.85
203 204 2.543802 CGCAGGATCGACGCTAGGA 61.544 63.158 0.00 0.00 0.00 2.94
204 205 2.050895 CGCAGGATCGACGCTAGG 60.051 66.667 0.00 0.00 0.00 3.02
205 206 1.082431 CTCGCAGGATCGACGCTAG 60.082 63.158 0.00 0.00 34.46 3.42
206 207 2.543802 CCTCGCAGGATCGACGCTA 61.544 63.158 0.00 0.00 37.67 4.26
207 208 3.893763 CCTCGCAGGATCGACGCT 61.894 66.667 0.00 0.00 37.67 5.07
208 209 3.889044 TCCTCGCAGGATCGACGC 61.889 66.667 0.00 0.00 40.06 5.19
215 216 0.611714 GGGTTTTAGTCCTCGCAGGA 59.388 55.000 1.25 1.25 43.43 3.86
216 217 0.613777 AGGGTTTTAGTCCTCGCAGG 59.386 55.000 0.00 0.00 36.46 4.85
217 218 3.604875 TTAGGGTTTTAGTCCTCGCAG 57.395 47.619 0.00 0.00 34.75 5.18
218 219 5.680594 TTATTAGGGTTTTAGTCCTCGCA 57.319 39.130 0.00 0.00 34.75 5.10
219 220 6.990939 AGATTTATTAGGGTTTTAGTCCTCGC 59.009 38.462 0.00 0.00 34.75 5.03
232 233 9.587772 CGACATCAGGTATTAGATTTATTAGGG 57.412 37.037 0.00 0.00 0.00 3.53
236 237 7.819900 GCCTCGACATCAGGTATTAGATTTATT 59.180 37.037 0.00 0.00 32.98 1.40
237 238 7.324178 GCCTCGACATCAGGTATTAGATTTAT 58.676 38.462 0.00 0.00 32.98 1.40
238 239 6.569801 CGCCTCGACATCAGGTATTAGATTTA 60.570 42.308 0.00 0.00 32.98 1.40
239 240 5.542779 GCCTCGACATCAGGTATTAGATTT 58.457 41.667 0.00 0.00 32.98 2.17
240 241 4.321304 CGCCTCGACATCAGGTATTAGATT 60.321 45.833 0.00 0.00 32.98 2.40
241 242 3.191581 CGCCTCGACATCAGGTATTAGAT 59.808 47.826 0.00 0.00 32.98 1.98
242 243 2.552743 CGCCTCGACATCAGGTATTAGA 59.447 50.000 0.00 0.00 32.98 2.10
243 244 2.922758 GCGCCTCGACATCAGGTATTAG 60.923 54.545 0.00 0.00 32.98 1.73
244 245 1.000607 GCGCCTCGACATCAGGTATTA 60.001 52.381 0.00 0.00 32.98 0.98
245 246 0.249489 GCGCCTCGACATCAGGTATT 60.249 55.000 0.00 0.00 32.98 1.89
246 247 1.364171 GCGCCTCGACATCAGGTAT 59.636 57.895 0.00 0.00 32.98 2.73
247 248 2.782222 GGCGCCTCGACATCAGGTA 61.782 63.158 22.15 0.00 33.63 3.08
248 249 4.148825 GGCGCCTCGACATCAGGT 62.149 66.667 22.15 0.00 33.63 4.00
249 250 4.147449 TGGCGCCTCGACATCAGG 62.147 66.667 29.70 0.00 41.22 3.86
254 255 3.982372 GAATCGTGGCGCCTCGACA 62.982 63.158 44.51 29.92 45.13 4.35
255 256 3.255379 GAATCGTGGCGCCTCGAC 61.255 66.667 44.51 32.42 43.12 4.20
256 257 4.508128 GGAATCGTGGCGCCTCGA 62.508 66.667 43.83 43.83 44.14 4.04
260 261 4.796495 AAGGGGAATCGTGGCGCC 62.796 66.667 22.73 22.73 37.38 6.53
261 262 3.202706 GAAGGGGAATCGTGGCGC 61.203 66.667 0.00 0.00 0.00 6.53
262 263 2.513897 GGAAGGGGAATCGTGGCG 60.514 66.667 0.00 0.00 0.00 5.69
263 264 2.513897 CGGAAGGGGAATCGTGGC 60.514 66.667 0.00 0.00 0.00 5.01
280 281 1.080434 GCTCTGACGGACAGTGACC 60.080 63.158 12.41 0.00 45.86 4.02
281 282 1.442857 CGCTCTGACGGACAGTGAC 60.443 63.158 12.41 0.00 45.86 3.67
282 283 2.954611 CGCTCTGACGGACAGTGA 59.045 61.111 12.41 0.00 45.86 3.41
298 299 4.918201 GATCCCTTCTGCCCGCCG 62.918 72.222 0.00 0.00 0.00 6.46
299 300 4.570874 GGATCCCTTCTGCCCGCC 62.571 72.222 0.00 0.00 0.00 6.13
300 301 4.918201 CGGATCCCTTCTGCCCGC 62.918 72.222 6.06 0.00 33.47 6.13
301 302 2.044806 ATTCGGATCCCTTCTGCCCG 62.045 60.000 6.06 0.00 41.36 6.13
302 303 0.183731 AATTCGGATCCCTTCTGCCC 59.816 55.000 6.06 0.00 0.00 5.36
303 304 1.134098 TGAATTCGGATCCCTTCTGCC 60.134 52.381 6.06 0.00 0.00 4.85
304 305 1.943340 GTGAATTCGGATCCCTTCTGC 59.057 52.381 6.06 1.94 0.00 4.26
305 306 3.201290 CTGTGAATTCGGATCCCTTCTG 58.799 50.000 6.06 0.00 0.00 3.02
306 307 2.171448 CCTGTGAATTCGGATCCCTTCT 59.829 50.000 6.06 0.00 0.00 2.85
307 308 2.565841 CCTGTGAATTCGGATCCCTTC 58.434 52.381 6.06 7.71 0.00 3.46
308 309 1.408822 GCCTGTGAATTCGGATCCCTT 60.409 52.381 6.06 0.00 0.00 3.95
309 310 0.181350 GCCTGTGAATTCGGATCCCT 59.819 55.000 6.06 0.00 0.00 4.20
310 311 0.181350 AGCCTGTGAATTCGGATCCC 59.819 55.000 6.06 0.00 0.00 3.85
311 312 1.587547 GAGCCTGTGAATTCGGATCC 58.412 55.000 0.00 0.00 0.00 3.36
312 313 1.202417 TCGAGCCTGTGAATTCGGATC 60.202 52.381 6.16 6.16 34.08 3.36
313 314 0.824109 TCGAGCCTGTGAATTCGGAT 59.176 50.000 0.04 0.00 34.08 4.18
314 315 0.108804 GTCGAGCCTGTGAATTCGGA 60.109 55.000 0.04 0.00 34.08 4.55
315 316 1.413767 CGTCGAGCCTGTGAATTCGG 61.414 60.000 0.04 0.00 34.08 4.30
316 317 1.413767 CCGTCGAGCCTGTGAATTCG 61.414 60.000 0.04 0.00 34.56 3.34
317 318 1.696832 GCCGTCGAGCCTGTGAATTC 61.697 60.000 0.00 0.00 0.00 2.17
318 319 1.741770 GCCGTCGAGCCTGTGAATT 60.742 57.895 0.00 0.00 0.00 2.17
319 320 2.125512 GCCGTCGAGCCTGTGAAT 60.126 61.111 0.00 0.00 0.00 2.57
320 321 3.573772 CTGCCGTCGAGCCTGTGAA 62.574 63.158 0.00 0.00 0.00 3.18
321 322 4.056125 CTGCCGTCGAGCCTGTGA 62.056 66.667 0.00 0.00 0.00 3.58
322 323 3.978723 CTCTGCCGTCGAGCCTGTG 62.979 68.421 0.00 0.00 0.00 3.66
323 324 3.753434 CTCTGCCGTCGAGCCTGT 61.753 66.667 0.00 0.00 0.00 4.00
324 325 2.676016 GATCTCTGCCGTCGAGCCTG 62.676 65.000 0.00 0.00 0.00 4.85
325 326 2.441164 ATCTCTGCCGTCGAGCCT 60.441 61.111 0.00 0.00 0.00 4.58
326 327 2.026879 GATCTCTGCCGTCGAGCC 59.973 66.667 0.00 0.00 0.00 4.70
327 328 2.352915 CGATCTCTGCCGTCGAGC 60.353 66.667 0.00 0.00 37.55 5.03
328 329 3.410958 TCGATCTCTGCCGTCGAG 58.589 61.111 0.00 0.00 39.22 4.04
329 330 2.180862 CCTCGATCTCTGCCGTCGA 61.181 63.158 0.00 0.00 41.53 4.20
330 331 2.329690 CCTCGATCTCTGCCGTCG 59.670 66.667 0.00 0.00 36.75 5.12
331 332 1.384989 TTCCCTCGATCTCTGCCGTC 61.385 60.000 0.00 0.00 0.00 4.79
332 333 1.379977 TTCCCTCGATCTCTGCCGT 60.380 57.895 0.00 0.00 0.00 5.68
333 334 1.361993 CTTCCCTCGATCTCTGCCG 59.638 63.158 0.00 0.00 0.00 5.69
334 335 0.757188 TCCTTCCCTCGATCTCTGCC 60.757 60.000 0.00 0.00 0.00 4.85
335 336 1.068434 CTTCCTTCCCTCGATCTCTGC 59.932 57.143 0.00 0.00 0.00 4.26
336 337 1.686052 CCTTCCTTCCCTCGATCTCTG 59.314 57.143 0.00 0.00 0.00 3.35
337 338 2.032151 GCCTTCCTTCCCTCGATCTCT 61.032 57.143 0.00 0.00 0.00 3.10
338 339 0.391228 GCCTTCCTTCCCTCGATCTC 59.609 60.000 0.00 0.00 0.00 2.75
339 340 0.031616 AGCCTTCCTTCCCTCGATCT 60.032 55.000 0.00 0.00 0.00 2.75
340 341 0.833949 AAGCCTTCCTTCCCTCGATC 59.166 55.000 0.00 0.00 0.00 3.69
341 342 0.833949 GAAGCCTTCCTTCCCTCGAT 59.166 55.000 0.00 0.00 43.39 3.59
342 343 2.287829 GAAGCCTTCCTTCCCTCGA 58.712 57.895 0.00 0.00 43.39 4.04
343 344 4.943822 GAAGCCTTCCTTCCCTCG 57.056 61.111 0.00 0.00 43.39 4.63
349 350 2.093447 CCGACTATGTGAAGCCTTCCTT 60.093 50.000 1.21 0.00 36.19 3.36
350 351 1.482593 CCGACTATGTGAAGCCTTCCT 59.517 52.381 1.21 0.00 0.00 3.36
351 352 1.473434 CCCGACTATGTGAAGCCTTCC 60.473 57.143 1.21 0.00 0.00 3.46
352 353 1.480954 TCCCGACTATGTGAAGCCTTC 59.519 52.381 0.00 0.00 0.00 3.46
353 354 1.568504 TCCCGACTATGTGAAGCCTT 58.431 50.000 0.00 0.00 0.00 4.35
354 355 1.794714 ATCCCGACTATGTGAAGCCT 58.205 50.000 0.00 0.00 0.00 4.58
355 356 2.213499 CAATCCCGACTATGTGAAGCC 58.787 52.381 0.00 0.00 0.00 4.35
356 357 2.158957 TCCAATCCCGACTATGTGAAGC 60.159 50.000 0.00 0.00 0.00 3.86
357 358 3.458189 GTCCAATCCCGACTATGTGAAG 58.542 50.000 0.00 0.00 0.00 3.02
358 359 2.169769 GGTCCAATCCCGACTATGTGAA 59.830 50.000 0.00 0.00 0.00 3.18
359 360 1.760613 GGTCCAATCCCGACTATGTGA 59.239 52.381 0.00 0.00 0.00 3.58
360 361 1.484653 TGGTCCAATCCCGACTATGTG 59.515 52.381 0.00 0.00 0.00 3.21
361 362 1.874129 TGGTCCAATCCCGACTATGT 58.126 50.000 0.00 0.00 0.00 2.29
362 363 2.771089 CATGGTCCAATCCCGACTATG 58.229 52.381 0.00 0.79 41.08 2.23
363 364 2.408565 ACATGGTCCAATCCCGACTAT 58.591 47.619 0.00 0.00 32.24 2.12
364 365 1.874129 ACATGGTCCAATCCCGACTA 58.126 50.000 0.00 0.00 0.00 2.59
365 366 1.874129 TACATGGTCCAATCCCGACT 58.126 50.000 0.00 0.00 0.00 4.18
366 367 2.093128 AGTTACATGGTCCAATCCCGAC 60.093 50.000 0.00 0.00 0.00 4.79
367 368 2.093181 CAGTTACATGGTCCAATCCCGA 60.093 50.000 0.00 0.00 0.00 5.14
368 369 2.093181 TCAGTTACATGGTCCAATCCCG 60.093 50.000 0.00 0.00 0.00 5.14
374 375 1.606994 GCGTGTCAGTTACATGGTCCA 60.607 52.381 0.00 0.00 44.08 4.02
383 384 1.346395 AGACCATTGGCGTGTCAGTTA 59.654 47.619 1.54 0.00 0.00 2.24
407 408 9.606631 AGAATCACTAGAAAGCAAGGTATTAAG 57.393 33.333 0.00 0.00 0.00 1.85
408 409 9.601217 GAGAATCACTAGAAAGCAAGGTATTAA 57.399 33.333 0.00 0.00 33.17 1.40
411 415 7.418483 GGAGAGAATCACTAGAAAGCAAGGTAT 60.418 40.741 0.00 0.00 37.82 2.73
414 418 5.115480 GGAGAGAATCACTAGAAAGCAAGG 58.885 45.833 0.00 0.00 37.82 3.61
507 517 2.489722 GCTAGCTTTGTCCCTTTCTTGG 59.510 50.000 7.70 0.00 0.00 3.61
649 661 3.235369 TGCCAGTGCAGTGTGGTA 58.765 55.556 19.93 8.45 44.23 3.25
661 681 3.027412 AGTACTAGAGGTGTGATGCCAG 58.973 50.000 0.00 0.00 0.00 4.85
662 682 3.101643 AGTACTAGAGGTGTGATGCCA 57.898 47.619 0.00 0.00 0.00 4.92
663 683 4.645588 AGTTAGTACTAGAGGTGTGATGCC 59.354 45.833 2.23 0.00 31.21 4.40
664 684 5.583495 CAGTTAGTACTAGAGGTGTGATGC 58.417 45.833 2.23 0.00 31.96 3.91
665 685 5.125578 TGCAGTTAGTACTAGAGGTGTGATG 59.874 44.000 2.23 0.00 31.96 3.07
666 686 5.125739 GTGCAGTTAGTACTAGAGGTGTGAT 59.874 44.000 2.23 0.00 31.96 3.06
669 689 4.404640 TGTGCAGTTAGTACTAGAGGTGT 58.595 43.478 2.23 0.00 33.54 4.16
670 690 5.583495 GATGTGCAGTTAGTACTAGAGGTG 58.417 45.833 2.23 1.33 33.54 4.00
671 691 4.335874 CGATGTGCAGTTAGTACTAGAGGT 59.664 45.833 2.23 0.00 33.54 3.85
672 692 4.790123 GCGATGTGCAGTTAGTACTAGAGG 60.790 50.000 2.23 0.00 45.45 3.69
673 693 4.283678 GCGATGTGCAGTTAGTACTAGAG 58.716 47.826 2.23 0.00 45.45 2.43
692 713 6.895607 TTATCAACAAAATATGACGAGCGA 57.104 33.333 0.00 0.00 0.00 4.93
693 714 7.112009 CCATTTATCAACAAAATATGACGAGCG 59.888 37.037 0.00 0.00 0.00 5.03
703 724 9.347240 AGAGATCGATCCATTTATCAACAAAAT 57.653 29.630 21.66 0.00 0.00 1.82
704 725 8.737168 AGAGATCGATCCATTTATCAACAAAA 57.263 30.769 21.66 0.00 0.00 2.44
717 738 2.988636 ATGGAGGAGAGATCGATCCA 57.011 50.000 21.66 12.77 43.82 3.41
723 744 4.102210 TGTCAATGGAATGGAGGAGAGATC 59.898 45.833 0.00 0.00 0.00 2.75
724 745 4.042884 TGTCAATGGAATGGAGGAGAGAT 58.957 43.478 0.00 0.00 0.00 2.75
727 748 2.912295 TGTGTCAATGGAATGGAGGAGA 59.088 45.455 0.00 0.00 0.00 3.71
729 750 2.374839 TGTGTGTCAATGGAATGGAGGA 59.625 45.455 0.00 0.00 0.00 3.71
730 751 2.489329 GTGTGTGTCAATGGAATGGAGG 59.511 50.000 0.00 0.00 0.00 4.30
731 752 2.489329 GGTGTGTGTCAATGGAATGGAG 59.511 50.000 0.00 0.00 0.00 3.86
733 754 2.030007 GTGGTGTGTGTCAATGGAATGG 60.030 50.000 0.00 0.00 0.00 3.16
734 755 2.886523 AGTGGTGTGTGTCAATGGAATG 59.113 45.455 0.00 0.00 0.00 2.67
735 756 3.149196 GAGTGGTGTGTGTCAATGGAAT 58.851 45.455 0.00 0.00 0.00 3.01
738 759 1.238439 GGAGTGGTGTGTGTCAATGG 58.762 55.000 0.00 0.00 0.00 3.16
739 760 1.603802 GTGGAGTGGTGTGTGTCAATG 59.396 52.381 0.00 0.00 0.00 2.82
740 761 1.490490 AGTGGAGTGGTGTGTGTCAAT 59.510 47.619 0.00 0.00 0.00 2.57
741 762 0.908910 AGTGGAGTGGTGTGTGTCAA 59.091 50.000 0.00 0.00 0.00 3.18
742 763 0.177836 CAGTGGAGTGGTGTGTGTCA 59.822 55.000 0.00 0.00 0.00 3.58
743 764 1.160329 GCAGTGGAGTGGTGTGTGTC 61.160 60.000 0.00 0.00 0.00 3.67
744 765 1.153168 GCAGTGGAGTGGTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
751 772 1.135915 CAGTAGCTAGCAGTGGAGTGG 59.864 57.143 18.83 0.00 0.00 4.00
757 778 3.857549 TCAGTTCAGTAGCTAGCAGTG 57.142 47.619 18.83 15.19 0.00 3.66
761 782 3.186119 CTGCTTCAGTTCAGTAGCTAGC 58.814 50.000 6.62 6.62 33.64 3.42
764 785 1.345741 TGCTGCTTCAGTTCAGTAGCT 59.654 47.619 10.70 0.00 46.81 3.32
768 789 1.818642 GGATGCTGCTTCAGTTCAGT 58.181 50.000 16.12 0.00 33.43 3.41
781 802 4.129737 CGTCGACCACCGGATGCT 62.130 66.667 9.46 0.00 39.14 3.79
1569 1590 3.680786 CCTGTCTCGGCCACGACA 61.681 66.667 19.53 19.53 45.59 4.35
1599 1620 1.314867 GATCTCCCAGTCCTCCCCA 59.685 63.158 0.00 0.00 0.00 4.96
1629 1650 4.682334 TAGTCCCCGGCGTGGTCA 62.682 66.667 8.58 0.00 35.15 4.02
1854 1875 1.549170 GGAGTGTAGAACCGATGGTGT 59.451 52.381 0.00 0.00 35.34 4.16
2178 2199 4.695993 TCGAACGCATGCTGCCCA 62.696 61.111 17.13 0.00 41.12 5.36
2295 2316 3.406764 GATCCAGCTGAAACACTTCACT 58.593 45.455 17.39 0.00 36.62 3.41
2297 2318 2.037121 TCGATCCAGCTGAAACACTTCA 59.963 45.455 17.39 0.00 39.30 3.02
2298 2319 2.413453 GTCGATCCAGCTGAAACACTTC 59.587 50.000 17.39 0.22 0.00 3.01
2303 2330 1.734465 CAAGGTCGATCCAGCTGAAAC 59.266 52.381 17.39 5.38 39.02 2.78
2319 2346 2.858344 CGCCGTGTAATTAGAGACAAGG 59.142 50.000 6.67 6.67 44.95 3.61
2344 2374 2.029649 CCTGCCATGGAAAAACAGAGTG 60.030 50.000 18.40 0.00 0.00 3.51
2391 2421 0.690762 TCTTGCCAAGTACACCCTCC 59.309 55.000 4.04 0.00 0.00 4.30
2426 2461 2.159128 TGTTGAGCACCAAACACAATGG 60.159 45.455 0.00 0.00 43.84 3.16
2571 2758 6.148811 TCAAAACCCGCAAATTTAACAAACAA 59.851 30.769 0.00 0.00 0.00 2.83
2579 2766 4.657436 ACAGTCAAAACCCGCAAATTTA 57.343 36.364 0.00 0.00 0.00 1.40
2589 2776 4.496840 CCCGTAGTTCAAACAGTCAAAACC 60.497 45.833 0.00 0.00 0.00 3.27
2594 2781 3.556213 CCATCCCGTAGTTCAAACAGTCA 60.556 47.826 0.00 0.00 0.00 3.41
2595 2782 3.000727 CCATCCCGTAGTTCAAACAGTC 58.999 50.000 0.00 0.00 0.00 3.51
2606 2793 0.393077 CAAGGCTACCCATCCCGTAG 59.607 60.000 0.00 0.00 36.97 3.51
2609 2796 2.070039 TCCAAGGCTACCCATCCCG 61.070 63.158 0.00 0.00 0.00 5.14
2640 2828 5.307196 AGCCCTAAAGACAACTTCTCAAGTA 59.693 40.000 0.00 0.00 41.91 2.24
2642 2830 4.646572 AGCCCTAAAGACAACTTCTCAAG 58.353 43.478 0.00 0.00 35.05 3.02
2651 2870 4.900054 GGGTATCTCTAGCCCTAAAGACAA 59.100 45.833 0.00 0.00 39.23 3.18
2705 2924 5.206905 AGCTAAGTGTTAATCCCCCAAAT 57.793 39.130 0.00 0.00 0.00 2.32
2720 3098 5.366768 TGTTTGAGGGATATGCTAGCTAAGT 59.633 40.000 17.23 2.12 0.00 2.24
2775 3153 1.275856 GCCACATGATGCCTTTTTGGA 59.724 47.619 0.00 0.00 38.35 3.53
2787 3165 1.755959 AGCAAAACACAAGCCACATGA 59.244 42.857 0.00 0.00 0.00 3.07
2800 3178 1.609208 TGCCCTTCTCAGAGCAAAAC 58.391 50.000 0.00 0.00 30.97 2.43
2810 3188 0.687354 TGGTGAGAGTTGCCCTTCTC 59.313 55.000 2.49 2.49 0.00 2.87
2844 3222 2.113243 GAGGTCGTGAGGGGCAGTTT 62.113 60.000 0.00 0.00 0.00 2.66
2878 3256 2.084610 TTCTGACGTTGATGGCTCTG 57.915 50.000 0.00 0.00 0.00 3.35
2912 3306 2.305927 GTGAAAGAGAAGGGGATGGTGA 59.694 50.000 0.00 0.00 0.00 4.02
2932 3326 2.045926 GATTCTGGTGCCAGCGGT 60.046 61.111 13.12 1.98 43.31 5.68
2933 3327 1.675310 TTGATTCTGGTGCCAGCGG 60.675 57.895 13.12 0.00 43.31 5.52
2954 3348 0.108186 AAGATGACAGCGGCGAATCA 60.108 50.000 12.98 11.08 0.00 2.57
2965 3359 4.454678 ACTGAAGCTTTGTGAAGATGACA 58.545 39.130 0.00 0.00 34.71 3.58
3016 3410 4.335315 CCCAAGCTCATGCGACTTAATTTA 59.665 41.667 0.00 0.00 45.42 1.40
3166 3561 3.690422 GATAATTCGCCGAAATGCACAA 58.310 40.909 2.60 0.00 0.00 3.33
3168 3563 2.298300 CGATAATTCGCCGAAATGCAC 58.702 47.619 2.60 0.00 38.75 4.57
3184 3579 3.868757 AGAAGCTGCTACAACACGATA 57.131 42.857 0.90 0.00 0.00 2.92
3189 3584 2.404215 GACGAAGAAGCTGCTACAACA 58.596 47.619 0.90 0.00 0.00 3.33
3215 3610 1.791662 GGTGTACGATTTGTGGGCG 59.208 57.895 0.00 0.00 0.00 6.13
3249 3644 0.960364 TGCCTTGCCAGATTTCGGAC 60.960 55.000 0.00 0.00 0.00 4.79
3279 3674 3.192466 CAAAATTGCAAGCATAGAGGGC 58.808 45.455 4.94 0.00 0.00 5.19
3299 3694 7.341512 TGTTTTGAGCAATGGGAATCATATACA 59.658 33.333 0.00 0.00 34.44 2.29
3305 3700 5.486735 AATGTTTTGAGCAATGGGAATCA 57.513 34.783 0.00 0.00 0.00 2.57
3321 3716 5.885881 TCTTTCTTTGCGTGTGTAATGTTT 58.114 33.333 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.