Multiple sequence alignment - TraesCS2D01G436400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G436400 chr2D 100.000 3349 0 0 1 3349 547037385 547034037 0.000000e+00 6185
1 TraesCS2D01G436400 chr2D 90.786 1259 91 14 1389 2627 547017999 547019252 0.000000e+00 1659
2 TraesCS2D01G436400 chr2D 79.143 1074 183 29 1582 2627 555107261 555108321 0.000000e+00 704
3 TraesCS2D01G436400 chr2D 83.646 746 82 16 2625 3347 544214517 544213789 0.000000e+00 665
4 TraesCS2D01G436400 chr2D 78.016 978 162 31 1576 2506 547150318 547151289 1.740000e-157 566
5 TraesCS2D01G436400 chr2D 80.463 778 115 24 1781 2536 547201352 547202114 8.110000e-156 560
6 TraesCS2D01G436400 chr2D 86.449 214 21 6 894 1100 555106444 555106656 9.350000e-56 228
7 TraesCS2D01G436400 chr2D 87.218 133 15 2 1254 1385 547035991 547035860 2.080000e-32 150
8 TraesCS2D01G436400 chr2D 87.218 133 15 2 1395 1526 547036132 547036001 2.080000e-32 150
9 TraesCS2D01G436400 chr2D 76.316 266 45 11 1253 1515 555106992 555107242 3.510000e-25 126
10 TraesCS2D01G436400 chr2A 98.762 2020 18 4 615 2629 689596438 689598455 0.000000e+00 3585
11 TraesCS2D01G436400 chr2A 79.759 1077 171 29 1582 2627 690520990 690522050 0.000000e+00 737
12 TraesCS2D01G436400 chr2A 98.297 411 6 1 2901 3310 689604289 689604699 0.000000e+00 719
13 TraesCS2D01G436400 chr2A 80.580 690 99 21 1781 2453 690729708 690730379 1.790000e-137 499
14 TraesCS2D01G436400 chr2A 77.268 937 144 38 1620 2506 690721365 690722282 1.400000e-133 486
15 TraesCS2D01G436400 chr2A 98.155 271 5 0 2622 2892 689602934 689603204 1.090000e-129 473
16 TraesCS2D01G436400 chr2A 98.819 254 3 0 1 254 689596193 689596446 1.420000e-123 453
17 TraesCS2D01G436400 chr2A 85.759 323 33 11 894 1207 690519916 690520234 2.490000e-86 329
18 TraesCS2D01G436400 chr2A 87.218 133 15 2 1254 1385 689597218 689597349 2.080000e-32 150
19 TraesCS2D01G436400 chr2A 86.466 133 16 2 1395 1526 689597077 689597208 9.680000e-31 145
20 TraesCS2D01G436400 chr2A 83.333 150 25 0 1401 1550 690520332 690520481 4.510000e-29 139
21 TraesCS2D01G436400 chr2B 90.590 1254 84 9 1389 2627 653659399 653660633 0.000000e+00 1631
22 TraesCS2D01G436400 chr2B 84.218 735 90 12 2625 3338 649590817 649590088 0.000000e+00 691
23 TraesCS2D01G436400 chr2B 78.809 873 127 30 1781 2627 653687381 653688221 4.920000e-148 534
24 TraesCS2D01G436400 chr1D 83.646 746 86 13 2625 3347 418024511 418023779 0.000000e+00 669
25 TraesCS2D01G436400 chr3D 97.906 382 4 3 247 626 571552487 571552866 0.000000e+00 658
26 TraesCS2D01G436400 chr3D 97.521 363 7 2 253 614 418717317 418716956 1.320000e-173 619
27 TraesCS2D01G436400 chr3D 96.995 366 7 3 252 614 464719038 464719402 2.210000e-171 612
28 TraesCS2D01G436400 chr7D 96.335 382 10 3 247 625 146089201 146089581 2.840000e-175 625
29 TraesCS2D01G436400 chr6B 94.832 387 17 2 245 628 632844069 632844455 4.780000e-168 601
30 TraesCS2D01G436400 chr6B 95.304 362 15 1 255 614 630861493 630861132 1.040000e-159 573
31 TraesCS2D01G436400 chr6B 93.684 380 19 4 249 624 565698881 565698503 6.270000e-157 564
32 TraesCS2D01G436400 chr1A 95.467 375 14 2 253 625 7794698 7794325 2.220000e-166 595
33 TraesCS2D01G436400 chr7B 93.717 382 18 4 247 624 97675229 97674850 4.850000e-158 568
34 TraesCS2D01G436400 chr4D 81.426 533 66 16 2715 3224 107444882 107444360 4.020000e-109 405
35 TraesCS2D01G436400 chr5B 86.162 383 34 7 2622 2985 603973393 603973775 2.420000e-106 396
36 TraesCS2D01G436400 chr3B 81.176 510 58 19 2625 3097 792964521 792964013 3.150000e-100 375
37 TraesCS2D01G436400 chr5A 83.721 387 44 7 2622 2989 611380444 611380830 6.880000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G436400 chr2D 547034037 547037385 3348 True 2161.666667 6185 91.478667 1 3349 3 chr2D.!!$R2 3348
1 TraesCS2D01G436400 chr2D 547017999 547019252 1253 False 1659.000000 1659 90.786000 1389 2627 1 chr2D.!!$F1 1238
2 TraesCS2D01G436400 chr2D 544213789 544214517 728 True 665.000000 665 83.646000 2625 3347 1 chr2D.!!$R1 722
3 TraesCS2D01G436400 chr2D 547150318 547151289 971 False 566.000000 566 78.016000 1576 2506 1 chr2D.!!$F2 930
4 TraesCS2D01G436400 chr2D 547201352 547202114 762 False 560.000000 560 80.463000 1781 2536 1 chr2D.!!$F3 755
5 TraesCS2D01G436400 chr2D 555106444 555108321 1877 False 352.666667 704 80.636000 894 2627 3 chr2D.!!$F4 1733
6 TraesCS2D01G436400 chr2A 689596193 689598455 2262 False 1083.250000 3585 92.816250 1 2629 4 chr2A.!!$F3 2628
7 TraesCS2D01G436400 chr2A 689602934 689604699 1765 False 596.000000 719 98.226000 2622 3310 2 chr2A.!!$F4 688
8 TraesCS2D01G436400 chr2A 690729708 690730379 671 False 499.000000 499 80.580000 1781 2453 1 chr2A.!!$F2 672
9 TraesCS2D01G436400 chr2A 690721365 690722282 917 False 486.000000 486 77.268000 1620 2506 1 chr2A.!!$F1 886
10 TraesCS2D01G436400 chr2A 690519916 690522050 2134 False 401.666667 737 82.950333 894 2627 3 chr2A.!!$F5 1733
11 TraesCS2D01G436400 chr2B 653659399 653660633 1234 False 1631.000000 1631 90.590000 1389 2627 1 chr2B.!!$F1 1238
12 TraesCS2D01G436400 chr2B 649590088 649590817 729 True 691.000000 691 84.218000 2625 3338 1 chr2B.!!$R1 713
13 TraesCS2D01G436400 chr2B 653687381 653688221 840 False 534.000000 534 78.809000 1781 2627 1 chr2B.!!$F2 846
14 TraesCS2D01G436400 chr1D 418023779 418024511 732 True 669.000000 669 83.646000 2625 3347 1 chr1D.!!$R1 722
15 TraesCS2D01G436400 chr4D 107444360 107444882 522 True 405.000000 405 81.426000 2715 3224 1 chr4D.!!$R1 509
16 TraesCS2D01G436400 chr3B 792964013 792964521 508 True 375.000000 375 81.176000 2625 3097 1 chr3B.!!$R1 472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 552 0.031178 CCGCTTGCAGCAAAAGAACT 59.969 50.0 9.65 0.0 42.58 3.01 F
1107 1157 0.328258 ACCACGCAAAGGATAAGGCT 59.672 50.0 0.00 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1596 2.435693 GGATACCCTGCGTCTGCCT 61.436 63.158 0.0 0.0 41.78 4.75 R
2639 3147 2.422597 CCAGTTTTGTGCTCGGTGATA 58.577 47.619 0.0 0.0 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 3.327404 GCCTCCTCCGTCCCCAAA 61.327 66.667 0.00 0.00 0.00 3.28
246 247 2.680370 GCCTCCTCCGTCCCCAAAT 61.680 63.158 0.00 0.00 0.00 2.32
247 248 1.342672 GCCTCCTCCGTCCCCAAATA 61.343 60.000 0.00 0.00 0.00 1.40
248 249 1.209621 CCTCCTCCGTCCCCAAATAA 58.790 55.000 0.00 0.00 0.00 1.40
249 250 1.562475 CCTCCTCCGTCCCCAAATAAA 59.438 52.381 0.00 0.00 0.00 1.40
250 251 2.025699 CCTCCTCCGTCCCCAAATAAAA 60.026 50.000 0.00 0.00 0.00 1.52
251 252 3.279434 CTCCTCCGTCCCCAAATAAAAG 58.721 50.000 0.00 0.00 0.00 2.27
252 253 2.914278 TCCTCCGTCCCCAAATAAAAGA 59.086 45.455 0.00 0.00 0.00 2.52
253 254 3.331294 TCCTCCGTCCCCAAATAAAAGAA 59.669 43.478 0.00 0.00 0.00 2.52
254 255 3.442625 CCTCCGTCCCCAAATAAAAGAAC 59.557 47.826 0.00 0.00 0.00 3.01
255 256 3.075884 TCCGTCCCCAAATAAAAGAACG 58.924 45.455 0.00 0.00 0.00 3.95
256 257 2.162809 CCGTCCCCAAATAAAAGAACGG 59.837 50.000 0.00 0.00 0.00 4.44
257 258 2.162809 CGTCCCCAAATAAAAGAACGGG 59.837 50.000 0.00 0.00 0.00 5.28
258 259 2.094390 GTCCCCAAATAAAAGAACGGGC 60.094 50.000 0.00 0.00 31.93 6.13
259 260 2.176045 CCCCAAATAAAAGAACGGGCT 58.824 47.619 0.00 0.00 31.93 5.19
260 261 2.565391 CCCCAAATAAAAGAACGGGCTT 59.435 45.455 0.00 0.00 31.93 4.35
261 262 3.584834 CCCAAATAAAAGAACGGGCTTG 58.415 45.455 0.00 0.00 0.00 4.01
262 263 2.993220 CCAAATAAAAGAACGGGCTTGC 59.007 45.455 0.00 0.00 0.00 4.01
263 264 3.306019 CCAAATAAAAGAACGGGCTTGCT 60.306 43.478 0.00 0.00 0.00 3.91
264 265 4.082463 CCAAATAAAAGAACGGGCTTGCTA 60.082 41.667 0.00 0.00 0.00 3.49
265 266 5.465935 CAAATAAAAGAACGGGCTTGCTAA 58.534 37.500 0.00 0.00 0.00 3.09
266 267 5.715434 AATAAAAGAACGGGCTTGCTAAA 57.285 34.783 0.00 0.00 0.00 1.85
267 268 5.715434 ATAAAAGAACGGGCTTGCTAAAA 57.285 34.783 0.00 0.00 0.00 1.52
268 269 4.394439 AAAAGAACGGGCTTGCTAAAAA 57.606 36.364 0.00 0.00 0.00 1.94
269 270 4.600692 AAAGAACGGGCTTGCTAAAAAT 57.399 36.364 0.00 0.00 0.00 1.82
270 271 3.850122 AGAACGGGCTTGCTAAAAATC 57.150 42.857 0.00 0.00 0.00 2.17
271 272 3.153919 AGAACGGGCTTGCTAAAAATCA 58.846 40.909 0.00 0.00 0.00 2.57
272 273 3.191371 AGAACGGGCTTGCTAAAAATCAG 59.809 43.478 0.00 0.00 0.00 2.90
273 274 2.514803 ACGGGCTTGCTAAAAATCAGT 58.485 42.857 0.00 0.00 0.00 3.41
274 275 2.488153 ACGGGCTTGCTAAAAATCAGTC 59.512 45.455 0.00 0.00 0.00 3.51
275 276 2.476185 CGGGCTTGCTAAAAATCAGTCG 60.476 50.000 0.00 0.00 0.00 4.18
276 277 2.747446 GGGCTTGCTAAAAATCAGTCGA 59.253 45.455 0.00 0.00 0.00 4.20
277 278 3.426292 GGGCTTGCTAAAAATCAGTCGAC 60.426 47.826 7.70 7.70 0.00 4.20
278 279 3.437049 GGCTTGCTAAAAATCAGTCGACT 59.563 43.478 13.58 13.58 0.00 4.18
279 280 4.398247 GCTTGCTAAAAATCAGTCGACTG 58.602 43.478 34.76 34.76 45.08 3.51
291 292 4.442375 CAGTCGACTGAGATTACCAAGT 57.558 45.455 36.73 0.00 46.59 3.16
292 293 4.416620 CAGTCGACTGAGATTACCAAGTC 58.583 47.826 36.73 0.00 46.59 3.01
293 294 4.156922 CAGTCGACTGAGATTACCAAGTCT 59.843 45.833 36.73 0.00 46.59 3.24
294 295 4.396790 AGTCGACTGAGATTACCAAGTCTC 59.603 45.833 19.30 0.00 40.94 3.36
295 296 4.156190 GTCGACTGAGATTACCAAGTCTCA 59.844 45.833 8.70 5.13 46.23 3.27
299 300 4.703645 TGAGATTACCAAGTCTCAGTCG 57.296 45.455 1.23 0.00 44.24 4.18
300 301 4.332828 TGAGATTACCAAGTCTCAGTCGA 58.667 43.478 1.23 0.00 44.24 4.20
301 302 4.156190 TGAGATTACCAAGTCTCAGTCGAC 59.844 45.833 7.70 7.70 44.24 4.20
302 303 3.444388 AGATTACCAAGTCTCAGTCGACC 59.556 47.826 13.01 0.00 34.46 4.79
303 304 2.281539 TACCAAGTCTCAGTCGACCA 57.718 50.000 13.01 0.00 34.46 4.02
304 305 1.633774 ACCAAGTCTCAGTCGACCAT 58.366 50.000 13.01 0.00 34.46 3.55
305 306 1.273606 ACCAAGTCTCAGTCGACCATG 59.726 52.381 13.01 5.07 34.46 3.66
306 307 1.354040 CAAGTCTCAGTCGACCATGC 58.646 55.000 13.01 0.00 34.46 4.06
307 308 0.969149 AAGTCTCAGTCGACCATGCA 59.031 50.000 13.01 0.00 34.46 3.96
308 309 0.969149 AGTCTCAGTCGACCATGCAA 59.031 50.000 13.01 0.00 34.46 4.08
309 310 1.071605 GTCTCAGTCGACCATGCAAC 58.928 55.000 13.01 3.16 0.00 4.17
310 311 0.678950 TCTCAGTCGACCATGCAACA 59.321 50.000 13.01 0.00 0.00 3.33
311 312 1.276138 TCTCAGTCGACCATGCAACAT 59.724 47.619 13.01 0.00 0.00 2.71
312 313 2.079158 CTCAGTCGACCATGCAACATT 58.921 47.619 13.01 0.00 0.00 2.71
313 314 2.485426 CTCAGTCGACCATGCAACATTT 59.515 45.455 13.01 0.00 0.00 2.32
314 315 2.884012 TCAGTCGACCATGCAACATTTT 59.116 40.909 13.01 0.00 0.00 1.82
315 316 3.317711 TCAGTCGACCATGCAACATTTTT 59.682 39.130 13.01 0.00 0.00 1.94
332 333 3.502191 TTTTTCTCAACGCTTGCAACT 57.498 38.095 0.00 0.00 0.00 3.16
333 334 3.502191 TTTTCTCAACGCTTGCAACTT 57.498 38.095 0.00 0.00 0.00 2.66
334 335 3.502191 TTTCTCAACGCTTGCAACTTT 57.498 38.095 0.00 0.00 0.00 2.66
335 336 3.502191 TTCTCAACGCTTGCAACTTTT 57.498 38.095 0.00 0.00 0.00 2.27
336 337 3.502191 TCTCAACGCTTGCAACTTTTT 57.498 38.095 0.00 0.00 0.00 1.94
354 355 1.681538 TTTTTCTACCGGTTGCAGCA 58.318 45.000 15.04 0.00 0.00 4.41
355 356 1.904287 TTTTCTACCGGTTGCAGCAT 58.096 45.000 15.04 0.00 0.00 3.79
356 357 1.904287 TTTCTACCGGTTGCAGCATT 58.096 45.000 15.04 0.00 0.00 3.56
357 358 1.448985 TTCTACCGGTTGCAGCATTC 58.551 50.000 15.04 0.00 0.00 2.67
358 359 0.739462 TCTACCGGTTGCAGCATTCG 60.739 55.000 15.04 3.23 0.00 3.34
359 360 1.004320 TACCGGTTGCAGCATTCGT 60.004 52.632 15.04 4.29 0.00 3.85
360 361 1.017177 TACCGGTTGCAGCATTCGTC 61.017 55.000 15.04 0.00 0.00 4.20
361 362 2.034879 CCGGTTGCAGCATTCGTCT 61.035 57.895 14.28 0.00 0.00 4.18
362 363 1.577328 CCGGTTGCAGCATTCGTCTT 61.577 55.000 14.28 0.00 0.00 3.01
363 364 0.453282 CGGTTGCAGCATTCGTCTTG 60.453 55.000 2.05 0.00 0.00 3.02
364 365 0.730494 GGTTGCAGCATTCGTCTTGC 60.730 55.000 2.05 0.00 40.45 4.01
370 371 3.389741 GCATTCGTCTTGCTGGTTG 57.610 52.632 0.00 0.00 37.14 3.77
371 372 0.593128 GCATTCGTCTTGCTGGTTGT 59.407 50.000 0.00 0.00 37.14 3.32
372 373 1.804151 GCATTCGTCTTGCTGGTTGTA 59.196 47.619 0.00 0.00 37.14 2.41
373 374 2.159653 GCATTCGTCTTGCTGGTTGTAG 60.160 50.000 0.00 0.00 37.14 2.74
374 375 1.508632 TTCGTCTTGCTGGTTGTAGC 58.491 50.000 0.00 0.00 43.95 3.58
382 383 2.619013 GCTGGTTGTAGCATGTTGTC 57.381 50.000 0.00 0.00 43.17 3.18
383 384 1.200020 GCTGGTTGTAGCATGTTGTCC 59.800 52.381 0.00 0.00 43.17 4.02
384 385 1.812571 CTGGTTGTAGCATGTTGTCCC 59.187 52.381 0.00 0.00 0.00 4.46
385 386 1.423541 TGGTTGTAGCATGTTGTCCCT 59.576 47.619 0.00 0.00 0.00 4.20
386 387 2.084546 GGTTGTAGCATGTTGTCCCTC 58.915 52.381 0.00 0.00 0.00 4.30
387 388 2.552155 GGTTGTAGCATGTTGTCCCTCA 60.552 50.000 0.00 0.00 0.00 3.86
388 389 3.347216 GTTGTAGCATGTTGTCCCTCAT 58.653 45.455 0.00 0.00 0.00 2.90
389 390 3.266510 TGTAGCATGTTGTCCCTCATC 57.733 47.619 0.00 0.00 0.00 2.92
390 391 2.205074 GTAGCATGTTGTCCCTCATCG 58.795 52.381 0.00 0.00 0.00 3.84
391 392 0.904649 AGCATGTTGTCCCTCATCGA 59.095 50.000 0.00 0.00 0.00 3.59
392 393 1.487976 AGCATGTTGTCCCTCATCGAT 59.512 47.619 0.00 0.00 0.00 3.59
393 394 2.092753 AGCATGTTGTCCCTCATCGATT 60.093 45.455 0.00 0.00 0.00 3.34
394 395 2.032550 GCATGTTGTCCCTCATCGATTG 59.967 50.000 0.00 0.00 0.00 2.67
395 396 3.273434 CATGTTGTCCCTCATCGATTGT 58.727 45.455 0.00 0.00 0.00 2.71
396 397 4.441792 CATGTTGTCCCTCATCGATTGTA 58.558 43.478 0.00 0.00 0.00 2.41
397 398 4.123497 TGTTGTCCCTCATCGATTGTAG 57.877 45.455 0.00 0.00 0.00 2.74
398 399 2.866762 GTTGTCCCTCATCGATTGTAGC 59.133 50.000 0.00 0.00 0.00 3.58
399 400 2.107366 TGTCCCTCATCGATTGTAGCA 58.893 47.619 0.00 0.00 0.00 3.49
400 401 2.700371 TGTCCCTCATCGATTGTAGCAT 59.300 45.455 0.00 0.00 0.00 3.79
401 402 3.895041 TGTCCCTCATCGATTGTAGCATA 59.105 43.478 0.00 0.00 0.00 3.14
402 403 4.528206 TGTCCCTCATCGATTGTAGCATAT 59.472 41.667 0.00 0.00 0.00 1.78
403 404 5.105752 GTCCCTCATCGATTGTAGCATATC 58.894 45.833 0.00 0.00 0.00 1.63
404 405 4.108336 CCCTCATCGATTGTAGCATATCG 58.892 47.826 0.00 0.00 43.67 2.92
405 406 4.380973 CCCTCATCGATTGTAGCATATCGT 60.381 45.833 0.00 0.00 43.03 3.73
406 407 4.795795 CCTCATCGATTGTAGCATATCGTC 59.204 45.833 0.00 0.00 43.03 4.20
407 408 5.392487 CCTCATCGATTGTAGCATATCGTCT 60.392 44.000 0.00 0.00 43.03 4.18
408 409 5.631992 TCATCGATTGTAGCATATCGTCTC 58.368 41.667 0.00 0.00 43.03 3.36
409 410 5.181245 TCATCGATTGTAGCATATCGTCTCA 59.819 40.000 0.00 0.00 43.03 3.27
410 411 4.784329 TCGATTGTAGCATATCGTCTCAC 58.216 43.478 0.00 0.00 43.03 3.51
411 412 3.914966 CGATTGTAGCATATCGTCTCACC 59.085 47.826 0.00 0.00 38.95 4.02
412 413 4.556699 CGATTGTAGCATATCGTCTCACCA 60.557 45.833 0.00 0.00 38.95 4.17
413 414 3.990318 TGTAGCATATCGTCTCACCAG 57.010 47.619 0.00 0.00 0.00 4.00
414 415 3.288092 TGTAGCATATCGTCTCACCAGT 58.712 45.455 0.00 0.00 0.00 4.00
415 416 3.699538 TGTAGCATATCGTCTCACCAGTT 59.300 43.478 0.00 0.00 0.00 3.16
416 417 3.170791 AGCATATCGTCTCACCAGTTG 57.829 47.619 0.00 0.00 0.00 3.16
417 418 2.497675 AGCATATCGTCTCACCAGTTGT 59.502 45.455 0.00 0.00 0.00 3.32
418 419 3.699538 AGCATATCGTCTCACCAGTTGTA 59.300 43.478 0.00 0.00 0.00 2.41
419 420 4.159693 AGCATATCGTCTCACCAGTTGTAA 59.840 41.667 0.00 0.00 0.00 2.41
420 421 4.267928 GCATATCGTCTCACCAGTTGTAAC 59.732 45.833 0.00 0.00 0.00 2.50
421 422 5.407502 CATATCGTCTCACCAGTTGTAACA 58.592 41.667 0.00 0.00 0.00 2.41
422 423 4.537135 ATCGTCTCACCAGTTGTAACAT 57.463 40.909 0.00 0.00 0.00 2.71
423 424 3.909430 TCGTCTCACCAGTTGTAACATC 58.091 45.455 0.00 0.00 0.00 3.06
424 425 3.572682 TCGTCTCACCAGTTGTAACATCT 59.427 43.478 0.00 0.00 0.00 2.90
425 426 3.675225 CGTCTCACCAGTTGTAACATCTG 59.325 47.826 0.00 0.00 32.74 2.90
431 432 4.100707 CCAGTTGTAACATCTGGCATTG 57.899 45.455 10.79 0.00 42.14 2.82
432 433 3.758023 CCAGTTGTAACATCTGGCATTGA 59.242 43.478 10.79 0.00 42.14 2.57
433 434 4.379813 CCAGTTGTAACATCTGGCATTGAC 60.380 45.833 10.79 0.00 42.14 3.18
434 435 3.436704 AGTTGTAACATCTGGCATTGACG 59.563 43.478 4.76 0.00 0.00 4.35
435 436 2.355197 TGTAACATCTGGCATTGACGG 58.645 47.619 4.76 0.00 0.00 4.79
436 437 2.290008 TGTAACATCTGGCATTGACGGT 60.290 45.455 0.00 0.00 0.00 4.83
437 438 1.909700 AACATCTGGCATTGACGGTT 58.090 45.000 0.00 0.00 0.00 4.44
438 439 1.167851 ACATCTGGCATTGACGGTTG 58.832 50.000 7.70 7.70 0.00 3.77
439 440 1.167851 CATCTGGCATTGACGGTTGT 58.832 50.000 0.00 0.00 0.00 3.32
440 441 2.290008 ACATCTGGCATTGACGGTTGTA 60.290 45.455 12.44 0.00 29.15 2.41
441 442 2.093306 TCTGGCATTGACGGTTGTAG 57.907 50.000 0.00 0.00 0.00 2.74
442 443 0.447801 CTGGCATTGACGGTTGTAGC 59.552 55.000 0.00 0.00 0.00 3.58
443 444 0.250510 TGGCATTGACGGTTGTAGCA 60.251 50.000 0.00 0.00 0.00 3.49
444 445 1.094785 GGCATTGACGGTTGTAGCAT 58.905 50.000 0.00 0.00 0.00 3.79
445 446 1.472480 GGCATTGACGGTTGTAGCATT 59.528 47.619 0.00 0.00 0.00 3.56
446 447 2.094752 GGCATTGACGGTTGTAGCATTT 60.095 45.455 0.00 0.00 0.00 2.32
447 448 3.574614 GCATTGACGGTTGTAGCATTTT 58.425 40.909 0.00 0.00 0.00 1.82
448 449 4.380023 GGCATTGACGGTTGTAGCATTTTA 60.380 41.667 0.00 0.00 0.00 1.52
449 450 5.157781 GCATTGACGGTTGTAGCATTTTAA 58.842 37.500 0.00 0.00 0.00 1.52
450 451 5.804979 GCATTGACGGTTGTAGCATTTTAAT 59.195 36.000 0.00 0.00 0.00 1.40
451 452 6.020678 GCATTGACGGTTGTAGCATTTTAATC 60.021 38.462 0.00 0.00 0.00 1.75
452 453 6.561737 TTGACGGTTGTAGCATTTTAATCA 57.438 33.333 0.00 0.00 0.00 2.57
453 454 5.933790 TGACGGTTGTAGCATTTTAATCAC 58.066 37.500 0.00 0.00 0.00 3.06
454 455 5.470437 TGACGGTTGTAGCATTTTAATCACA 59.530 36.000 0.00 0.00 0.00 3.58
455 456 5.695818 ACGGTTGTAGCATTTTAATCACAC 58.304 37.500 0.00 0.00 0.00 3.82
456 457 5.092781 CGGTTGTAGCATTTTAATCACACC 58.907 41.667 0.00 0.00 0.00 4.16
457 458 5.335269 CGGTTGTAGCATTTTAATCACACCA 60.335 40.000 0.00 0.00 0.00 4.17
458 459 6.092748 GGTTGTAGCATTTTAATCACACCAG 58.907 40.000 0.00 0.00 0.00 4.00
459 460 5.309323 TGTAGCATTTTAATCACACCAGC 57.691 39.130 0.00 0.00 0.00 4.85
460 461 5.009631 TGTAGCATTTTAATCACACCAGCT 58.990 37.500 0.00 0.00 0.00 4.24
461 462 4.445452 AGCATTTTAATCACACCAGCTG 57.555 40.909 6.78 6.78 0.00 4.24
462 463 2.925563 GCATTTTAATCACACCAGCTGC 59.074 45.455 8.66 0.00 0.00 5.25
463 464 3.614630 GCATTTTAATCACACCAGCTGCA 60.615 43.478 8.66 0.00 0.00 4.41
464 465 3.921119 TTTTAATCACACCAGCTGCAG 57.079 42.857 10.11 10.11 0.00 4.41
465 466 1.167851 TTAATCACACCAGCTGCAGC 58.832 50.000 31.53 31.53 42.49 5.25
466 467 0.036590 TAATCACACCAGCTGCAGCA 59.963 50.000 38.24 18.09 45.16 4.41
467 468 1.521450 AATCACACCAGCTGCAGCAC 61.521 55.000 38.24 12.54 45.16 4.40
468 469 3.667282 CACACCAGCTGCAGCACC 61.667 66.667 38.24 11.74 45.16 5.01
469 470 4.193893 ACACCAGCTGCAGCACCA 62.194 61.111 38.24 0.00 45.16 4.17
470 471 2.908428 CACCAGCTGCAGCACCAA 60.908 61.111 38.24 0.00 45.16 3.67
471 472 2.116772 ACCAGCTGCAGCACCAAT 59.883 55.556 38.24 16.73 45.16 3.16
472 473 1.532316 ACCAGCTGCAGCACCAATT 60.532 52.632 38.24 15.93 45.16 2.32
473 474 1.117142 ACCAGCTGCAGCACCAATTT 61.117 50.000 38.24 15.14 45.16 1.82
474 475 0.034337 CCAGCTGCAGCACCAATTTT 59.966 50.000 38.24 14.33 45.16 1.82
475 476 1.425412 CAGCTGCAGCACCAATTTTC 58.575 50.000 38.24 7.01 45.16 2.29
476 477 1.042229 AGCTGCAGCACCAATTTTCA 58.958 45.000 38.24 0.00 45.16 2.69
477 478 1.621814 AGCTGCAGCACCAATTTTCAT 59.378 42.857 38.24 12.19 45.16 2.57
478 479 2.038033 AGCTGCAGCACCAATTTTCATT 59.962 40.909 38.24 11.97 45.16 2.57
479 480 2.158841 GCTGCAGCACCAATTTTCATTG 59.841 45.455 33.36 0.00 41.59 2.82
480 481 2.144730 TGCAGCACCAATTTTCATTGC 58.855 42.857 0.00 0.00 38.88 3.56
481 482 2.224329 TGCAGCACCAATTTTCATTGCT 60.224 40.909 0.00 0.00 44.35 3.91
482 483 2.809696 GCAGCACCAATTTTCATTGCTT 59.190 40.909 0.00 0.00 41.60 3.91
483 484 3.364565 GCAGCACCAATTTTCATTGCTTG 60.365 43.478 0.00 0.00 41.60 4.01
484 485 3.810941 CAGCACCAATTTTCATTGCTTGT 59.189 39.130 0.00 0.00 41.60 3.16
485 486 4.989797 CAGCACCAATTTTCATTGCTTGTA 59.010 37.500 0.00 0.00 41.60 2.41
486 487 5.466058 CAGCACCAATTTTCATTGCTTGTAA 59.534 36.000 0.00 0.00 41.60 2.41
487 488 6.018098 CAGCACCAATTTTCATTGCTTGTAAA 60.018 34.615 0.00 0.00 41.60 2.01
488 489 6.541641 AGCACCAATTTTCATTGCTTGTAAAA 59.458 30.769 0.00 0.00 40.66 1.52
489 490 6.632434 GCACCAATTTTCATTGCTTGTAAAAC 59.368 34.615 0.00 0.00 38.88 2.43
490 491 7.131565 CACCAATTTTCATTGCTTGTAAAACC 58.868 34.615 0.00 0.00 38.88 3.27
491 492 6.018343 ACCAATTTTCATTGCTTGTAAAACCG 60.018 34.615 0.00 0.00 38.88 4.44
492 493 6.018343 CCAATTTTCATTGCTTGTAAAACCGT 60.018 34.615 0.00 0.00 38.88 4.83
493 494 7.405769 CAATTTTCATTGCTTGTAAAACCGTT 58.594 30.769 0.00 0.00 33.57 4.44
494 495 5.957910 TTTCATTGCTTGTAAAACCGTTG 57.042 34.783 0.00 0.00 0.00 4.10
495 496 3.376540 TCATTGCTTGTAAAACCGTTGC 58.623 40.909 0.00 0.00 0.00 4.17
496 497 2.941453 TTGCTTGTAAAACCGTTGCA 57.059 40.000 0.00 0.00 0.00 4.08
497 498 2.941453 TGCTTGTAAAACCGTTGCAA 57.059 40.000 0.00 0.00 0.00 4.08
498 499 2.531206 TGCTTGTAAAACCGTTGCAAC 58.469 42.857 19.89 19.89 0.00 4.17
499 500 2.094700 TGCTTGTAAAACCGTTGCAACA 60.095 40.909 28.01 5.65 0.00 3.33
500 501 3.120041 GCTTGTAAAACCGTTGCAACAT 58.880 40.909 28.01 13.58 0.00 2.71
501 502 3.553917 GCTTGTAAAACCGTTGCAACATT 59.446 39.130 28.01 18.53 0.00 2.71
502 503 4.033472 GCTTGTAAAACCGTTGCAACATTT 59.967 37.500 28.01 24.06 0.00 2.32
503 504 5.446607 GCTTGTAAAACCGTTGCAACATTTT 60.447 36.000 29.61 29.61 33.79 1.82
504 505 6.481954 TTGTAAAACCGTTGCAACATTTTT 57.518 29.167 30.89 29.33 32.43 1.94
505 506 6.095947 TGTAAAACCGTTGCAACATTTTTC 57.904 33.333 30.89 27.29 32.43 2.29
506 507 5.637810 TGTAAAACCGTTGCAACATTTTTCA 59.362 32.000 30.89 28.73 32.43 2.69
507 508 5.809719 AAAACCGTTGCAACATTTTTCAT 57.190 30.435 28.01 10.49 0.00 2.57
508 509 5.402464 AAACCGTTGCAACATTTTTCATC 57.598 34.783 28.01 0.00 0.00 2.92
509 510 4.052159 ACCGTTGCAACATTTTTCATCA 57.948 36.364 28.01 0.00 0.00 3.07
510 511 4.630111 ACCGTTGCAACATTTTTCATCAT 58.370 34.783 28.01 0.00 0.00 2.45
511 512 4.685628 ACCGTTGCAACATTTTTCATCATC 59.314 37.500 28.01 0.00 0.00 2.92
512 513 4.201513 CCGTTGCAACATTTTTCATCATCG 60.202 41.667 28.01 9.57 0.00 3.84
513 514 4.201513 CGTTGCAACATTTTTCATCATCGG 60.202 41.667 28.01 3.19 0.00 4.18
514 515 4.517952 TGCAACATTTTTCATCATCGGT 57.482 36.364 0.00 0.00 0.00 4.69
515 516 4.880759 TGCAACATTTTTCATCATCGGTT 58.119 34.783 0.00 0.00 0.00 4.44
516 517 4.685165 TGCAACATTTTTCATCATCGGTTG 59.315 37.500 0.00 0.00 37.88 3.77
517 518 4.685628 GCAACATTTTTCATCATCGGTTGT 59.314 37.500 0.00 0.00 37.34 3.32
518 519 5.861251 GCAACATTTTTCATCATCGGTTGTA 59.139 36.000 0.00 0.00 37.34 2.41
519 520 6.033831 GCAACATTTTTCATCATCGGTTGTAG 59.966 38.462 0.00 0.00 37.34 2.74
520 521 5.640732 ACATTTTTCATCATCGGTTGTAGC 58.359 37.500 0.00 0.00 0.00 3.58
521 522 5.182950 ACATTTTTCATCATCGGTTGTAGCA 59.817 36.000 0.00 0.00 0.00 3.49
522 523 5.895636 TTTTTCATCATCGGTTGTAGCAT 57.104 34.783 0.00 0.00 0.00 3.79
523 524 5.484173 TTTTCATCATCGGTTGTAGCATC 57.516 39.130 0.00 0.00 0.00 3.91
524 525 4.406648 TTCATCATCGGTTGTAGCATCT 57.593 40.909 0.00 0.00 0.00 2.90
525 526 5.529581 TTCATCATCGGTTGTAGCATCTA 57.470 39.130 0.00 0.00 0.00 1.98
526 527 5.126396 TCATCATCGGTTGTAGCATCTAG 57.874 43.478 0.00 0.00 0.00 2.43
527 528 3.371102 TCATCGGTTGTAGCATCTAGC 57.629 47.619 0.00 0.00 46.19 3.42
536 537 4.899239 GCATCTAGCCGTGCCGCT 62.899 66.667 3.96 0.00 43.09 5.52
537 538 2.202932 CATCTAGCCGTGCCGCTT 60.203 61.111 0.00 0.00 40.39 4.68
538 539 2.202932 ATCTAGCCGTGCCGCTTG 60.203 61.111 0.00 0.00 40.39 4.01
548 549 2.336088 GCCGCTTGCAGCAAAAGA 59.664 55.556 9.65 0.00 42.58 2.52
549 550 1.300080 GCCGCTTGCAGCAAAAGAA 60.300 52.632 9.65 0.00 42.58 2.52
550 551 1.551503 GCCGCTTGCAGCAAAAGAAC 61.552 55.000 9.65 0.00 42.58 3.01
551 552 0.031178 CCGCTTGCAGCAAAAGAACT 59.969 50.000 9.65 0.00 42.58 3.01
552 553 1.266718 CCGCTTGCAGCAAAAGAACTA 59.733 47.619 9.65 0.00 42.58 2.24
553 554 2.095059 CCGCTTGCAGCAAAAGAACTAT 60.095 45.455 9.65 0.00 42.58 2.12
554 555 2.912967 CGCTTGCAGCAAAAGAACTATG 59.087 45.455 9.65 0.00 42.58 2.23
555 556 2.665052 GCTTGCAGCAAAAGAACTATGC 59.335 45.455 9.65 1.81 41.89 3.14
561 562 3.813529 GCAAAAGAACTATGCTGACGT 57.186 42.857 0.00 0.00 37.12 4.34
562 563 3.737305 GCAAAAGAACTATGCTGACGTC 58.263 45.455 9.11 9.11 37.12 4.34
563 564 3.186409 GCAAAAGAACTATGCTGACGTCA 59.814 43.478 18.88 18.88 37.12 4.35
564 565 4.702392 CAAAAGAACTATGCTGACGTCAC 58.298 43.478 15.76 12.31 0.00 3.67
565 566 3.944055 AAGAACTATGCTGACGTCACT 57.056 42.857 15.76 4.57 0.00 3.41
566 567 3.495670 AGAACTATGCTGACGTCACTC 57.504 47.619 15.76 10.06 0.00 3.51
567 568 2.159503 AGAACTATGCTGACGTCACTCG 60.160 50.000 15.76 6.53 46.00 4.18
568 569 1.450025 ACTATGCTGACGTCACTCGA 58.550 50.000 15.76 0.00 42.86 4.04
569 570 2.017782 ACTATGCTGACGTCACTCGAT 58.982 47.619 15.76 6.62 42.86 3.59
570 571 2.423892 ACTATGCTGACGTCACTCGATT 59.576 45.455 15.76 0.00 42.86 3.34
571 572 1.633561 ATGCTGACGTCACTCGATTG 58.366 50.000 15.76 4.09 42.86 2.67
572 573 0.596082 TGCTGACGTCACTCGATTGA 59.404 50.000 15.76 0.65 42.86 2.57
574 575 1.135660 GCTGACGTCACTCGATTGAGA 60.136 52.381 15.76 0.00 45.57 3.27
575 576 2.510874 CTGACGTCACTCGATTGAGAC 58.489 52.381 15.76 4.71 45.57 3.36
576 577 2.152016 TGACGTCACTCGATTGAGACT 58.848 47.619 15.76 0.00 45.57 3.24
577 578 2.552743 TGACGTCACTCGATTGAGACTT 59.447 45.455 15.76 0.00 45.57 3.01
578 579 2.911723 GACGTCACTCGATTGAGACTTG 59.088 50.000 17.27 4.92 45.57 3.16
579 580 2.254459 CGTCACTCGATTGAGACTTGG 58.746 52.381 17.27 1.26 45.57 3.61
580 581 2.351835 CGTCACTCGATTGAGACTTGGT 60.352 50.000 17.27 0.00 45.57 3.67
581 582 3.654414 GTCACTCGATTGAGACTTGGTT 58.346 45.455 17.27 0.00 45.57 3.67
582 583 4.615223 CGTCACTCGATTGAGACTTGGTTA 60.615 45.833 17.27 0.00 45.57 2.85
583 584 5.227908 GTCACTCGATTGAGACTTGGTTAA 58.772 41.667 17.27 0.00 45.57 2.01
584 585 5.346281 GTCACTCGATTGAGACTTGGTTAAG 59.654 44.000 17.27 0.00 45.57 1.85
595 596 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
596 597 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
597 598 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
598 599 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
609 610 4.335082 CAGTCGACTGAGTTCTAGACAG 57.665 50.000 36.73 7.99 46.59 3.51
610 611 3.997681 CAGTCGACTGAGTTCTAGACAGA 59.002 47.826 36.73 0.00 46.59 3.41
611 612 3.998341 AGTCGACTGAGTTCTAGACAGAC 59.002 47.826 19.30 8.11 35.85 3.51
612 613 3.125658 GTCGACTGAGTTCTAGACAGACC 59.874 52.174 8.70 6.10 35.85 3.85
613 614 2.420722 CGACTGAGTTCTAGACAGACCC 59.579 54.545 14.06 4.21 35.85 4.46
625 626 8.669243 GTTCTAGACAGACCCATAAAAGAAATG 58.331 37.037 0.00 0.00 0.00 2.32
1107 1157 0.328258 ACCACGCAAAGGATAAGGCT 59.672 50.000 0.00 0.00 0.00 4.58
1222 1272 2.755103 GGTTTGGATAGTGCAAAGGAGG 59.245 50.000 0.00 0.00 38.34 4.30
1492 1596 2.669133 CCCCCTGATCAACTCCGCA 61.669 63.158 0.00 0.00 0.00 5.69
1979 2419 4.070716 GTTTCATCCATCCATGCCTCTAG 58.929 47.826 0.00 0.00 0.00 2.43
2639 3147 4.998051 TGCTGGAAAAGGAGAGGTAAAAT 58.002 39.130 0.00 0.00 0.00 1.82
3026 4667 3.873529 ACAAAACGAATGAGAAGAACGC 58.126 40.909 0.00 0.00 0.00 4.84
3310 4957 4.079787 TGGGTGAAGATTTATTGAGGGGAG 60.080 45.833 0.00 0.00 0.00 4.30
3347 4994 0.389391 CGAGGGCGACATGGTAGAAT 59.611 55.000 0.00 0.00 40.82 2.40
3348 4995 1.869754 CGAGGGCGACATGGTAGAATG 60.870 57.143 0.00 0.00 40.82 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 5.715434 TTTTAGCAAGCCCGTTCTTTTAT 57.285 34.783 0.00 0.00 0.00 1.40
246 247 5.517322 TTTTTAGCAAGCCCGTTCTTTTA 57.483 34.783 0.00 0.00 0.00 1.52
247 248 4.394439 TTTTTAGCAAGCCCGTTCTTTT 57.606 36.364 0.00 0.00 0.00 2.27
248 249 4.038642 TGATTTTTAGCAAGCCCGTTCTTT 59.961 37.500 0.00 0.00 0.00 2.52
249 250 3.572255 TGATTTTTAGCAAGCCCGTTCTT 59.428 39.130 0.00 0.00 0.00 2.52
250 251 3.153919 TGATTTTTAGCAAGCCCGTTCT 58.846 40.909 0.00 0.00 0.00 3.01
251 252 3.057526 ACTGATTTTTAGCAAGCCCGTTC 60.058 43.478 0.00 0.00 0.00 3.95
252 253 2.890945 ACTGATTTTTAGCAAGCCCGTT 59.109 40.909 0.00 0.00 0.00 4.44
253 254 2.488153 GACTGATTTTTAGCAAGCCCGT 59.512 45.455 0.00 0.00 0.00 5.28
254 255 2.476185 CGACTGATTTTTAGCAAGCCCG 60.476 50.000 0.00 0.00 0.00 6.13
255 256 2.747446 TCGACTGATTTTTAGCAAGCCC 59.253 45.455 0.00 0.00 0.00 5.19
256 257 3.437049 AGTCGACTGATTTTTAGCAAGCC 59.563 43.478 19.30 0.00 0.00 4.35
257 258 4.398247 CAGTCGACTGATTTTTAGCAAGC 58.602 43.478 36.73 0.00 46.59 4.01
270 271 4.156922 AGACTTGGTAATCTCAGTCGACTG 59.843 45.833 34.76 34.76 45.08 3.51
271 272 4.337145 AGACTTGGTAATCTCAGTCGACT 58.663 43.478 13.58 13.58 0.00 4.18
272 273 4.156190 TGAGACTTGGTAATCTCAGTCGAC 59.844 45.833 7.70 7.70 45.01 4.20
273 274 4.332828 TGAGACTTGGTAATCTCAGTCGA 58.667 43.478 0.00 0.00 45.01 4.20
274 275 4.703645 TGAGACTTGGTAATCTCAGTCG 57.296 45.455 0.00 0.00 45.01 4.18
279 280 4.439016 GGTCGACTGAGACTTGGTAATCTC 60.439 50.000 16.46 0.00 41.54 2.75
280 281 3.444388 GGTCGACTGAGACTTGGTAATCT 59.556 47.826 16.46 0.00 40.76 2.40
281 282 3.192844 TGGTCGACTGAGACTTGGTAATC 59.807 47.826 16.46 0.00 40.76 1.75
282 283 3.162666 TGGTCGACTGAGACTTGGTAAT 58.837 45.455 16.46 0.00 40.76 1.89
283 284 2.589720 TGGTCGACTGAGACTTGGTAA 58.410 47.619 16.46 0.00 40.76 2.85
284 285 2.281539 TGGTCGACTGAGACTTGGTA 57.718 50.000 16.46 0.00 40.76 3.25
285 286 1.273606 CATGGTCGACTGAGACTTGGT 59.726 52.381 16.46 0.00 40.76 3.67
286 287 2.001812 CATGGTCGACTGAGACTTGG 57.998 55.000 16.46 0.00 40.76 3.61
287 288 1.337167 TGCATGGTCGACTGAGACTTG 60.337 52.381 16.46 7.76 40.76 3.16
288 289 0.969149 TGCATGGTCGACTGAGACTT 59.031 50.000 16.46 0.00 40.76 3.01
289 290 0.969149 TTGCATGGTCGACTGAGACT 59.031 50.000 16.46 0.00 40.76 3.24
290 291 1.071605 GTTGCATGGTCGACTGAGAC 58.928 55.000 16.46 5.53 40.25 3.36
291 292 0.678950 TGTTGCATGGTCGACTGAGA 59.321 50.000 16.46 0.00 0.00 3.27
292 293 1.730501 ATGTTGCATGGTCGACTGAG 58.269 50.000 16.46 6.42 0.00 3.35
293 294 2.183478 AATGTTGCATGGTCGACTGA 57.817 45.000 16.46 2.65 0.00 3.41
294 295 2.995466 AAATGTTGCATGGTCGACTG 57.005 45.000 16.46 8.03 0.00 3.51
312 313 3.502191 AGTTGCAAGCGTTGAGAAAAA 57.498 38.095 0.00 0.00 0.00 1.94
313 314 3.502191 AAGTTGCAAGCGTTGAGAAAA 57.498 38.095 0.00 0.00 0.00 2.29
314 315 3.502191 AAAGTTGCAAGCGTTGAGAAA 57.498 38.095 0.00 0.00 0.00 2.52
315 316 3.502191 AAAAGTTGCAAGCGTTGAGAA 57.498 38.095 0.00 0.00 0.00 2.87
316 317 3.502191 AAAAAGTTGCAAGCGTTGAGA 57.498 38.095 0.00 0.00 0.00 3.27
335 336 1.681538 TGCTGCAACCGGTAGAAAAA 58.318 45.000 8.00 0.00 0.00 1.94
336 337 1.904287 ATGCTGCAACCGGTAGAAAA 58.096 45.000 8.00 0.00 0.00 2.29
337 338 1.810151 GAATGCTGCAACCGGTAGAAA 59.190 47.619 8.00 0.00 0.00 2.52
338 339 1.448985 GAATGCTGCAACCGGTAGAA 58.551 50.000 8.00 0.00 0.00 2.10
339 340 0.739462 CGAATGCTGCAACCGGTAGA 60.739 55.000 8.00 0.00 0.00 2.59
340 341 1.019278 ACGAATGCTGCAACCGGTAG 61.019 55.000 23.67 2.11 0.00 3.18
341 342 1.004320 ACGAATGCTGCAACCGGTA 60.004 52.632 23.67 0.00 0.00 4.02
342 343 2.281484 ACGAATGCTGCAACCGGT 60.281 55.556 23.67 0.00 0.00 5.28
343 344 1.577328 AAGACGAATGCTGCAACCGG 61.577 55.000 23.67 0.00 0.00 5.28
344 345 0.453282 CAAGACGAATGCTGCAACCG 60.453 55.000 20.17 20.17 0.00 4.44
345 346 0.730494 GCAAGACGAATGCTGCAACC 60.730 55.000 6.36 0.01 40.64 3.77
346 347 2.716988 GCAAGACGAATGCTGCAAC 58.283 52.632 6.36 3.14 40.64 4.17
352 353 0.593128 ACAACCAGCAAGACGAATGC 59.407 50.000 0.00 0.00 44.15 3.56
353 354 2.159653 GCTACAACCAGCAAGACGAATG 60.160 50.000 0.00 0.00 41.40 2.67
354 355 2.076863 GCTACAACCAGCAAGACGAAT 58.923 47.619 0.00 0.00 41.40 3.34
355 356 1.508632 GCTACAACCAGCAAGACGAA 58.491 50.000 0.00 0.00 41.40 3.85
356 357 3.210857 GCTACAACCAGCAAGACGA 57.789 52.632 0.00 0.00 41.40 4.20
363 364 1.200020 GGACAACATGCTACAACCAGC 59.800 52.381 0.00 0.00 42.15 4.85
364 365 1.812571 GGGACAACATGCTACAACCAG 59.187 52.381 0.00 0.00 0.00 4.00
365 366 1.423541 AGGGACAACATGCTACAACCA 59.576 47.619 0.00 0.00 0.00 3.67
366 367 2.084546 GAGGGACAACATGCTACAACC 58.915 52.381 0.00 0.00 0.00 3.77
367 368 2.778299 TGAGGGACAACATGCTACAAC 58.222 47.619 0.00 0.00 0.00 3.32
368 369 3.609853 GATGAGGGACAACATGCTACAA 58.390 45.455 0.00 0.00 0.00 2.41
369 370 2.418609 CGATGAGGGACAACATGCTACA 60.419 50.000 0.00 0.00 0.00 2.74
370 371 2.159099 TCGATGAGGGACAACATGCTAC 60.159 50.000 0.00 0.00 0.00 3.58
371 372 2.107366 TCGATGAGGGACAACATGCTA 58.893 47.619 0.00 0.00 0.00 3.49
372 373 0.904649 TCGATGAGGGACAACATGCT 59.095 50.000 0.00 0.00 0.00 3.79
373 374 1.959042 ATCGATGAGGGACAACATGC 58.041 50.000 0.00 0.00 0.00 4.06
374 375 3.273434 ACAATCGATGAGGGACAACATG 58.727 45.455 0.00 0.00 0.00 3.21
375 376 3.634397 ACAATCGATGAGGGACAACAT 57.366 42.857 0.00 0.00 0.00 2.71
376 377 3.678806 GCTACAATCGATGAGGGACAACA 60.679 47.826 0.00 0.00 0.00 3.33
377 378 2.866762 GCTACAATCGATGAGGGACAAC 59.133 50.000 0.00 0.00 0.00 3.32
378 379 2.499693 TGCTACAATCGATGAGGGACAA 59.500 45.455 0.00 0.00 0.00 3.18
379 380 2.107366 TGCTACAATCGATGAGGGACA 58.893 47.619 0.00 0.00 0.00 4.02
380 381 2.890808 TGCTACAATCGATGAGGGAC 57.109 50.000 0.00 0.00 0.00 4.46
381 382 4.142381 CGATATGCTACAATCGATGAGGGA 60.142 45.833 0.00 0.00 46.08 4.20
382 383 4.108336 CGATATGCTACAATCGATGAGGG 58.892 47.826 0.00 0.00 46.08 4.30
383 384 4.738124 ACGATATGCTACAATCGATGAGG 58.262 43.478 11.27 0.00 46.08 3.86
384 385 5.635866 AGACGATATGCTACAATCGATGAG 58.364 41.667 11.27 0.00 46.08 2.90
385 386 5.181245 TGAGACGATATGCTACAATCGATGA 59.819 40.000 11.27 0.00 46.08 2.92
386 387 5.284897 GTGAGACGATATGCTACAATCGATG 59.715 44.000 11.27 0.00 46.08 3.84
387 388 5.394802 GTGAGACGATATGCTACAATCGAT 58.605 41.667 11.27 0.00 46.08 3.59
388 389 4.320275 GGTGAGACGATATGCTACAATCGA 60.320 45.833 11.27 0.00 46.08 3.59
390 391 4.871513 TGGTGAGACGATATGCTACAATC 58.128 43.478 0.00 0.00 0.00 2.67
391 392 4.342378 ACTGGTGAGACGATATGCTACAAT 59.658 41.667 0.00 0.00 0.00 2.71
392 393 3.699538 ACTGGTGAGACGATATGCTACAA 59.300 43.478 0.00 0.00 0.00 2.41
393 394 3.288092 ACTGGTGAGACGATATGCTACA 58.712 45.455 0.00 0.00 0.00 2.74
394 395 3.992260 ACTGGTGAGACGATATGCTAC 57.008 47.619 0.00 0.00 0.00 3.58
395 396 3.699538 ACAACTGGTGAGACGATATGCTA 59.300 43.478 0.00 0.00 0.00 3.49
396 397 2.497675 ACAACTGGTGAGACGATATGCT 59.502 45.455 0.00 0.00 0.00 3.79
397 398 2.893637 ACAACTGGTGAGACGATATGC 58.106 47.619 0.00 0.00 0.00 3.14
398 399 5.407502 TGTTACAACTGGTGAGACGATATG 58.592 41.667 0.00 0.00 0.00 1.78
399 400 5.654603 TGTTACAACTGGTGAGACGATAT 57.345 39.130 0.00 0.00 0.00 1.63
400 401 5.417894 AGATGTTACAACTGGTGAGACGATA 59.582 40.000 0.00 0.00 0.00 2.92
401 402 4.220821 AGATGTTACAACTGGTGAGACGAT 59.779 41.667 0.00 0.00 0.00 3.73
402 403 3.572682 AGATGTTACAACTGGTGAGACGA 59.427 43.478 0.00 0.00 0.00 4.20
403 404 3.675225 CAGATGTTACAACTGGTGAGACG 59.325 47.826 13.75 0.00 31.94 4.18
404 405 3.997021 CCAGATGTTACAACTGGTGAGAC 59.003 47.826 26.87 0.00 45.42 3.36
405 406 4.271696 CCAGATGTTACAACTGGTGAGA 57.728 45.455 26.87 0.00 45.42 3.27
411 412 4.669965 CGTCAATGCCAGATGTTACAACTG 60.670 45.833 14.48 14.48 34.69 3.16
412 413 3.436704 CGTCAATGCCAGATGTTACAACT 59.563 43.478 0.00 0.00 0.00 3.16
413 414 3.426159 CCGTCAATGCCAGATGTTACAAC 60.426 47.826 0.00 0.00 0.00 3.32
414 415 2.746904 CCGTCAATGCCAGATGTTACAA 59.253 45.455 0.00 0.00 0.00 2.41
415 416 2.290008 ACCGTCAATGCCAGATGTTACA 60.290 45.455 0.00 0.00 0.00 2.41
416 417 2.356135 ACCGTCAATGCCAGATGTTAC 58.644 47.619 0.00 0.00 0.00 2.50
417 418 2.746904 CAACCGTCAATGCCAGATGTTA 59.253 45.455 0.00 0.00 0.00 2.41
418 419 1.541147 CAACCGTCAATGCCAGATGTT 59.459 47.619 0.00 0.00 0.00 2.71
419 420 1.167851 CAACCGTCAATGCCAGATGT 58.832 50.000 0.00 0.00 0.00 3.06
420 421 1.167851 ACAACCGTCAATGCCAGATG 58.832 50.000 0.00 0.00 0.00 2.90
421 422 2.632377 CTACAACCGTCAATGCCAGAT 58.368 47.619 0.00 0.00 0.00 2.90
422 423 1.943968 GCTACAACCGTCAATGCCAGA 60.944 52.381 0.00 0.00 0.00 3.86
423 424 0.447801 GCTACAACCGTCAATGCCAG 59.552 55.000 0.00 0.00 0.00 4.85
424 425 0.250510 TGCTACAACCGTCAATGCCA 60.251 50.000 0.00 0.00 0.00 4.92
425 426 1.094785 ATGCTACAACCGTCAATGCC 58.905 50.000 0.00 0.00 0.00 4.40
426 427 2.919666 AATGCTACAACCGTCAATGC 57.080 45.000 0.00 0.00 0.00 3.56
427 428 7.008266 GTGATTAAAATGCTACAACCGTCAATG 59.992 37.037 0.00 0.00 0.00 2.82
428 429 7.027161 GTGATTAAAATGCTACAACCGTCAAT 58.973 34.615 0.00 0.00 0.00 2.57
429 430 6.017026 TGTGATTAAAATGCTACAACCGTCAA 60.017 34.615 0.00 0.00 0.00 3.18
430 431 5.470437 TGTGATTAAAATGCTACAACCGTCA 59.530 36.000 0.00 0.00 0.00 4.35
431 432 5.793457 GTGTGATTAAAATGCTACAACCGTC 59.207 40.000 0.00 0.00 0.00 4.79
432 433 5.335348 GGTGTGATTAAAATGCTACAACCGT 60.335 40.000 0.00 0.00 0.00 4.83
433 434 5.092781 GGTGTGATTAAAATGCTACAACCG 58.907 41.667 0.00 0.00 0.00 4.44
434 435 6.019779 TGGTGTGATTAAAATGCTACAACC 57.980 37.500 0.00 0.00 0.00 3.77
435 436 5.572896 GCTGGTGTGATTAAAATGCTACAAC 59.427 40.000 0.00 0.00 0.00 3.32
436 437 5.476599 AGCTGGTGTGATTAAAATGCTACAA 59.523 36.000 0.00 0.00 0.00 2.41
437 438 5.009631 AGCTGGTGTGATTAAAATGCTACA 58.990 37.500 0.00 0.00 0.00 2.74
438 439 5.335127 CAGCTGGTGTGATTAAAATGCTAC 58.665 41.667 5.57 0.00 0.00 3.58
439 440 4.142403 GCAGCTGGTGTGATTAAAATGCTA 60.142 41.667 17.12 0.00 0.00 3.49
440 441 3.367703 GCAGCTGGTGTGATTAAAATGCT 60.368 43.478 17.12 0.00 0.00 3.79
441 442 2.925563 GCAGCTGGTGTGATTAAAATGC 59.074 45.455 17.12 0.00 0.00 3.56
442 443 4.171005 CTGCAGCTGGTGTGATTAAAATG 58.829 43.478 17.12 0.00 0.00 2.32
443 444 3.367703 GCTGCAGCTGGTGTGATTAAAAT 60.368 43.478 31.33 0.00 38.21 1.82
444 445 2.030007 GCTGCAGCTGGTGTGATTAAAA 60.030 45.455 31.33 0.00 38.21 1.52
445 446 1.541147 GCTGCAGCTGGTGTGATTAAA 59.459 47.619 31.33 0.00 38.21 1.52
446 447 1.167851 GCTGCAGCTGGTGTGATTAA 58.832 50.000 31.33 0.00 38.21 1.40
447 448 0.036590 TGCTGCAGCTGGTGTGATTA 59.963 50.000 36.61 12.08 42.66 1.75
448 449 1.228337 TGCTGCAGCTGGTGTGATT 60.228 52.632 36.61 0.00 42.66 2.57
449 450 1.970114 GTGCTGCAGCTGGTGTGAT 60.970 57.895 36.61 0.00 42.66 3.06
450 451 2.592574 GTGCTGCAGCTGGTGTGA 60.593 61.111 36.61 14.44 42.66 3.58
451 452 3.667282 GGTGCTGCAGCTGGTGTG 61.667 66.667 36.61 0.00 42.66 3.82
452 453 2.989173 ATTGGTGCTGCAGCTGGTGT 62.989 55.000 36.61 18.63 42.66 4.16
453 454 1.812686 AATTGGTGCTGCAGCTGGTG 61.813 55.000 36.61 1.76 42.66 4.17
454 455 1.117142 AAATTGGTGCTGCAGCTGGT 61.117 50.000 36.61 16.91 42.66 4.00
455 456 0.034337 AAAATTGGTGCTGCAGCTGG 59.966 50.000 36.61 2.82 42.66 4.85
456 457 1.269883 TGAAAATTGGTGCTGCAGCTG 60.270 47.619 36.61 10.11 42.66 4.24
457 458 1.042229 TGAAAATTGGTGCTGCAGCT 58.958 45.000 36.61 16.35 42.66 4.24
458 459 2.088950 ATGAAAATTGGTGCTGCAGC 57.911 45.000 31.89 31.89 42.50 5.25
459 460 2.158841 GCAATGAAAATTGGTGCTGCAG 59.841 45.455 10.11 10.11 32.43 4.41
460 461 2.144730 GCAATGAAAATTGGTGCTGCA 58.855 42.857 0.00 0.00 32.43 4.41
461 462 2.419667 AGCAATGAAAATTGGTGCTGC 58.580 42.857 2.58 0.00 43.66 5.25
462 463 3.810941 ACAAGCAATGAAAATTGGTGCTG 59.189 39.130 4.10 3.16 44.52 4.41
464 465 5.921004 TTACAAGCAATGAAAATTGGTGC 57.079 34.783 4.10 0.00 40.86 5.01
465 466 7.131565 GGTTTTACAAGCAATGAAAATTGGTG 58.868 34.615 4.10 2.49 40.86 4.17
466 467 6.018343 CGGTTTTACAAGCAATGAAAATTGGT 60.018 34.615 0.00 0.00 43.22 3.67
467 468 6.018343 ACGGTTTTACAAGCAATGAAAATTGG 60.018 34.615 1.01 0.00 32.43 3.16
468 469 6.942891 ACGGTTTTACAAGCAATGAAAATTG 58.057 32.000 0.00 0.00 34.79 2.32
469 470 7.405769 CAACGGTTTTACAAGCAATGAAAATT 58.594 30.769 0.00 0.00 0.00 1.82
470 471 6.510960 GCAACGGTTTTACAAGCAATGAAAAT 60.511 34.615 0.00 0.00 0.00 1.82
471 472 5.220491 GCAACGGTTTTACAAGCAATGAAAA 60.220 36.000 0.00 0.00 0.00 2.29
472 473 4.268884 GCAACGGTTTTACAAGCAATGAAA 59.731 37.500 0.00 0.00 0.00 2.69
473 474 3.799420 GCAACGGTTTTACAAGCAATGAA 59.201 39.130 0.00 0.00 0.00 2.57
474 475 3.181486 TGCAACGGTTTTACAAGCAATGA 60.181 39.130 0.00 0.00 0.00 2.57
475 476 3.119291 TGCAACGGTTTTACAAGCAATG 58.881 40.909 0.00 0.00 0.00 2.82
476 477 3.444703 TGCAACGGTTTTACAAGCAAT 57.555 38.095 0.00 0.00 0.00 3.56
477 478 2.924290 GTTGCAACGGTTTTACAAGCAA 59.076 40.909 14.90 9.20 38.07 3.91
478 479 2.094700 TGTTGCAACGGTTTTACAAGCA 60.095 40.909 23.79 0.00 0.00 3.91
479 480 2.531206 TGTTGCAACGGTTTTACAAGC 58.469 42.857 23.79 0.00 0.00 4.01
480 481 5.710613 AAATGTTGCAACGGTTTTACAAG 57.289 34.783 23.79 0.00 0.00 3.16
481 482 6.147164 TGAAAAATGTTGCAACGGTTTTACAA 59.853 30.769 29.68 20.80 32.63 2.41
482 483 5.637810 TGAAAAATGTTGCAACGGTTTTACA 59.362 32.000 29.68 25.29 32.63 2.41
483 484 6.095947 TGAAAAATGTTGCAACGGTTTTAC 57.904 33.333 29.68 23.94 32.63 2.01
484 485 6.535150 TGATGAAAAATGTTGCAACGGTTTTA 59.465 30.769 29.68 22.54 32.63 1.52
485 486 5.352569 TGATGAAAAATGTTGCAACGGTTTT 59.647 32.000 28.85 28.85 33.60 2.43
486 487 4.872691 TGATGAAAAATGTTGCAACGGTTT 59.127 33.333 23.79 21.94 0.00 3.27
487 488 4.437239 TGATGAAAAATGTTGCAACGGTT 58.563 34.783 23.79 17.76 0.00 4.44
488 489 4.052159 TGATGAAAAATGTTGCAACGGT 57.948 36.364 23.79 12.83 0.00 4.83
489 490 4.201513 CGATGATGAAAAATGTTGCAACGG 60.202 41.667 23.79 0.00 0.00 4.44
490 491 4.201513 CCGATGATGAAAAATGTTGCAACG 60.202 41.667 23.79 7.17 0.00 4.10
491 492 4.685628 ACCGATGATGAAAAATGTTGCAAC 59.314 37.500 22.83 22.83 0.00 4.17
492 493 4.880759 ACCGATGATGAAAAATGTTGCAA 58.119 34.783 0.00 0.00 0.00 4.08
493 494 4.517952 ACCGATGATGAAAAATGTTGCA 57.482 36.364 0.00 0.00 0.00 4.08
494 495 4.685628 ACAACCGATGATGAAAAATGTTGC 59.314 37.500 0.00 0.00 36.26 4.17
495 496 6.033831 GCTACAACCGATGATGAAAAATGTTG 59.966 38.462 0.00 0.00 38.18 3.33
496 497 6.092748 GCTACAACCGATGATGAAAAATGTT 58.907 36.000 0.00 0.00 0.00 2.71
497 498 5.182950 TGCTACAACCGATGATGAAAAATGT 59.817 36.000 0.00 0.00 0.00 2.71
498 499 5.639757 TGCTACAACCGATGATGAAAAATG 58.360 37.500 0.00 0.00 0.00 2.32
499 500 5.895636 TGCTACAACCGATGATGAAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
500 501 5.647658 AGATGCTACAACCGATGATGAAAAA 59.352 36.000 0.00 0.00 0.00 1.94
501 502 5.185454 AGATGCTACAACCGATGATGAAAA 58.815 37.500 0.00 0.00 0.00 2.29
502 503 4.769688 AGATGCTACAACCGATGATGAAA 58.230 39.130 0.00 0.00 0.00 2.69
503 504 4.406648 AGATGCTACAACCGATGATGAA 57.593 40.909 0.00 0.00 0.00 2.57
504 505 4.559502 GCTAGATGCTACAACCGATGATGA 60.560 45.833 0.00 0.00 38.95 2.92
505 506 3.677121 GCTAGATGCTACAACCGATGATG 59.323 47.826 0.00 0.00 38.95 3.07
506 507 3.306364 GGCTAGATGCTACAACCGATGAT 60.306 47.826 0.00 0.00 42.39 2.45
507 508 2.035961 GGCTAGATGCTACAACCGATGA 59.964 50.000 0.00 0.00 42.39 2.92
508 509 2.408050 GGCTAGATGCTACAACCGATG 58.592 52.381 0.00 0.00 42.39 3.84
509 510 1.000163 CGGCTAGATGCTACAACCGAT 60.000 52.381 0.00 0.00 41.61 4.18
510 511 0.384309 CGGCTAGATGCTACAACCGA 59.616 55.000 0.00 0.00 41.61 4.69
511 512 0.102481 ACGGCTAGATGCTACAACCG 59.898 55.000 0.00 0.00 44.49 4.44
512 513 1.571919 CACGGCTAGATGCTACAACC 58.428 55.000 0.00 0.00 42.39 3.77
513 514 0.931005 GCACGGCTAGATGCTACAAC 59.069 55.000 0.00 0.00 42.39 3.32
514 515 0.179084 GGCACGGCTAGATGCTACAA 60.179 55.000 12.18 0.00 41.74 2.41
515 516 1.441729 GGCACGGCTAGATGCTACA 59.558 57.895 12.18 0.00 41.74 2.74
516 517 4.345337 GGCACGGCTAGATGCTAC 57.655 61.111 12.18 0.00 41.74 3.58
535 536 4.170292 AGCATAGTTCTTTTGCTGCAAG 57.830 40.909 15.39 5.04 44.63 4.01
541 542 3.186409 TGACGTCAGCATAGTTCTTTTGC 59.814 43.478 15.76 0.00 36.63 3.68
542 543 4.449068 AGTGACGTCAGCATAGTTCTTTTG 59.551 41.667 20.73 0.00 0.00 2.44
543 544 4.632153 AGTGACGTCAGCATAGTTCTTTT 58.368 39.130 20.73 0.00 0.00 2.27
544 545 4.238514 GAGTGACGTCAGCATAGTTCTTT 58.761 43.478 20.73 0.00 0.00 2.52
545 546 3.670895 CGAGTGACGTCAGCATAGTTCTT 60.671 47.826 20.73 0.00 37.22 2.52
546 547 2.159503 CGAGTGACGTCAGCATAGTTCT 60.160 50.000 20.73 9.76 37.22 3.01
547 548 2.159558 TCGAGTGACGTCAGCATAGTTC 60.160 50.000 20.73 4.30 43.13 3.01
548 549 1.810755 TCGAGTGACGTCAGCATAGTT 59.189 47.619 20.73 0.00 43.13 2.24
549 550 1.450025 TCGAGTGACGTCAGCATAGT 58.550 50.000 20.73 0.00 43.13 2.12
550 551 2.765108 ATCGAGTGACGTCAGCATAG 57.235 50.000 20.73 8.69 43.13 2.23
551 552 2.422127 TCAATCGAGTGACGTCAGCATA 59.578 45.455 20.73 5.75 43.13 3.14
552 553 1.202348 TCAATCGAGTGACGTCAGCAT 59.798 47.619 20.73 8.13 43.13 3.79
553 554 0.596082 TCAATCGAGTGACGTCAGCA 59.404 50.000 20.73 3.14 43.13 4.41
554 555 1.135660 TCTCAATCGAGTGACGTCAGC 60.136 52.381 20.73 13.26 43.13 4.26
555 556 2.160615 AGTCTCAATCGAGTGACGTCAG 59.839 50.000 20.73 7.81 43.13 3.51
556 557 2.152016 AGTCTCAATCGAGTGACGTCA 58.848 47.619 15.76 15.76 43.13 4.35
557 558 2.904011 AGTCTCAATCGAGTGACGTC 57.096 50.000 12.21 9.11 43.13 4.34
558 559 2.351835 CCAAGTCTCAATCGAGTGACGT 60.352 50.000 12.21 0.00 43.13 4.34
559 560 2.254459 CCAAGTCTCAATCGAGTGACG 58.746 52.381 12.21 8.55 40.44 4.35
560 561 3.305398 ACCAAGTCTCAATCGAGTGAC 57.695 47.619 12.21 3.90 40.44 3.67
561 562 5.010719 ACTTAACCAAGTCTCAATCGAGTGA 59.989 40.000 15.60 15.60 41.25 3.41
562 563 5.230942 ACTTAACCAAGTCTCAATCGAGTG 58.769 41.667 6.51 6.51 41.25 3.51
563 564 5.470047 ACTTAACCAAGTCTCAATCGAGT 57.530 39.130 0.00 0.00 41.25 4.18
587 588 6.307170 GTCTGTCTAGAACTCAGTCGACTGA 61.307 48.000 38.24 38.24 41.59 3.41
588 589 3.997681 TCTGTCTAGAACTCAGTCGACTG 59.002 47.826 34.76 34.76 45.08 3.51
589 590 3.998341 GTCTGTCTAGAACTCAGTCGACT 59.002 47.826 13.58 13.58 34.01 4.18
590 591 3.125658 GGTCTGTCTAGAACTCAGTCGAC 59.874 52.174 7.70 7.70 37.67 4.20
591 592 3.336468 GGTCTGTCTAGAACTCAGTCGA 58.664 50.000 8.29 0.00 37.67 4.20
592 593 2.420722 GGGTCTGTCTAGAACTCAGTCG 59.579 54.545 8.29 0.00 40.61 4.18
593 594 3.422796 TGGGTCTGTCTAGAACTCAGTC 58.577 50.000 8.29 3.90 40.61 3.51
594 595 3.527507 TGGGTCTGTCTAGAACTCAGT 57.472 47.619 8.29 0.00 40.61 3.41
595 596 6.531503 TTTATGGGTCTGTCTAGAACTCAG 57.468 41.667 0.00 0.00 40.61 3.35
596 597 6.724441 TCTTTTATGGGTCTGTCTAGAACTCA 59.276 38.462 0.00 0.00 40.61 3.41
597 598 7.171630 TCTTTTATGGGTCTGTCTAGAACTC 57.828 40.000 0.00 0.00 40.61 3.01
598 599 7.554959 TTCTTTTATGGGTCTGTCTAGAACT 57.445 36.000 0.00 0.00 40.61 3.01
599 600 8.669243 CATTTCTTTTATGGGTCTGTCTAGAAC 58.331 37.037 0.00 0.00 40.04 3.01
600 601 7.829211 CCATTTCTTTTATGGGTCTGTCTAGAA 59.171 37.037 0.00 0.00 39.11 2.10
601 602 7.182026 TCCATTTCTTTTATGGGTCTGTCTAGA 59.818 37.037 0.00 0.00 42.32 2.43
602 603 7.338710 TCCATTTCTTTTATGGGTCTGTCTAG 58.661 38.462 0.00 0.00 42.32 2.43
603 604 7.265599 TCCATTTCTTTTATGGGTCTGTCTA 57.734 36.000 0.00 0.00 42.32 2.59
604 605 6.139679 TCCATTTCTTTTATGGGTCTGTCT 57.860 37.500 0.00 0.00 42.32 3.41
605 606 7.410120 AATCCATTTCTTTTATGGGTCTGTC 57.590 36.000 0.00 0.00 42.32 3.51
606 607 6.381133 GGAATCCATTTCTTTTATGGGTCTGT 59.619 38.462 0.00 0.00 42.32 3.41
607 608 6.608808 AGGAATCCATTTCTTTTATGGGTCTG 59.391 38.462 0.61 0.00 42.32 3.51
608 609 6.745857 AGGAATCCATTTCTTTTATGGGTCT 58.254 36.000 0.61 0.00 42.32 3.85
609 610 7.423844 AAGGAATCCATTTCTTTTATGGGTC 57.576 36.000 0.61 0.00 42.32 4.46
610 611 7.813087 AAAGGAATCCATTTCTTTTATGGGT 57.187 32.000 0.61 0.00 41.60 4.51
665 667 2.907917 CTCGGGAGCGAGGTAGGG 60.908 72.222 0.00 0.00 32.81 3.53
958 969 2.337583 ACGGAGATTGAACACACATCG 58.662 47.619 0.00 0.00 0.00 3.84
1222 1272 3.005554 CCATAACCAGCGATGATGATCC 58.994 50.000 0.06 0.00 0.00 3.36
1492 1596 2.435693 GGATACCCTGCGTCTGCCT 61.436 63.158 0.00 0.00 41.78 4.75
1979 2419 5.978919 TGAACAGCATTTGATGACTGAAAAC 59.021 36.000 2.36 7.17 37.63 2.43
2092 2557 7.591165 CAGTCAATGATATCACCATTGGAATC 58.409 38.462 10.37 7.31 46.49 2.52
2639 3147 2.422597 CCAGTTTTGTGCTCGGTGATA 58.577 47.619 0.00 0.00 0.00 2.15
3026 4667 2.717639 ATTCTTTGAGATCCCGGTGG 57.282 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.