Multiple sequence alignment - TraesCS2D01G436300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G436300 chr2D 100.000 4250 0 0 864 5113 547017873 547022122 0.000000e+00 7849.0
1 TraesCS2D01G436300 chr2D 90.816 1263 83 16 990 2243 547035997 547034759 0.000000e+00 1659.0
2 TraesCS2D01G436300 chr2D 100.000 563 0 0 1 563 547017010 547017572 0.000000e+00 1040.0
3 TraesCS2D01G436300 chr2D 81.703 951 129 20 1385 2323 547201352 547202269 0.000000e+00 750.0
4 TraesCS2D01G436300 chr2D 80.879 910 133 18 1245 2119 547150386 547151289 0.000000e+00 678.0
5 TraesCS2D01G436300 chr2D 83.921 709 86 19 2559 3256 555108775 555109466 0.000000e+00 652.0
6 TraesCS2D01G436300 chr2D 79.415 991 144 47 2122 3095 547151341 547152288 0.000000e+00 645.0
7 TraesCS2D01G436300 chr2D 82.222 720 104 14 2547 3256 547202307 547203012 2.630000e-167 599.0
8 TraesCS2D01G436300 chr2D 87.081 209 24 2 3864 4069 547203608 547203816 3.080000e-57 233.0
9 TraesCS2D01G436300 chr2D 89.552 134 14 0 1002 1135 547200913 547201046 2.450000e-38 171.0
10 TraesCS2D01G436300 chr2D 95.714 70 2 1 3253 3321 547020203 547020272 1.500000e-20 111.0
11 TraesCS2D01G436300 chr2D 93.333 45 3 0 1002 1046 547200841 547200885 3.300000e-07 67.6
12 TraesCS2D01G436300 chr2B 93.322 3534 146 27 864 4370 653659273 653662743 0.000000e+00 5136.0
13 TraesCS2D01G436300 chr2B 79.433 1906 298 59 1385 3256 653687381 653689226 0.000000e+00 1262.0
14 TraesCS2D01G436300 chr2B 82.873 724 96 22 2547 3257 653669235 653669943 4.350000e-175 625.0
15 TraesCS2D01G436300 chr2B 93.261 371 19 3 4377 4743 653662779 653663147 4.500000e-150 542.0
16 TraesCS2D01G436300 chr2B 79.683 694 113 16 3578 4249 653670117 653670804 4.630000e-130 475.0
17 TraesCS2D01G436300 chr2B 81.982 444 52 21 1 419 653657747 653658187 8.150000e-93 351.0
18 TraesCS2D01G436300 chr2B 94.479 163 1 2 408 563 653659071 653659232 1.420000e-60 244.0
19 TraesCS2D01G436300 chr2B 94.286 70 3 1 3253 3321 653661588 653661657 7.000000e-19 106.0
20 TraesCS2D01G436300 chr2B 96.552 58 2 0 3524 3581 653661971 653662028 4.210000e-16 97.1
21 TraesCS2D01G436300 chr2B 95.349 43 2 0 4905 4947 653663567 653663609 9.190000e-08 69.4
22 TraesCS2D01G436300 chr2A 93.618 3275 160 25 990 4236 689597212 689600465 0.000000e+00 4844.0
23 TraesCS2D01G436300 chr2A 79.682 1196 160 56 2097 3257 690722312 690723459 0.000000e+00 785.0
24 TraesCS2D01G436300 chr2A 84.064 684 94 9 1385 2065 690729708 690730379 0.000000e+00 645.0
25 TraesCS2D01G436300 chr2A 78.034 1129 176 46 2159 3256 690730552 690731639 0.000000e+00 645.0
26 TraesCS2D01G436300 chr2A 84.720 661 82 13 2607 3256 690522539 690523191 1.200000e-180 643.0
27 TraesCS2D01G436300 chr2A 79.498 917 123 34 1245 2119 690721389 690722282 4.410000e-165 592.0
28 TraesCS2D01G436300 chr2A 80.980 694 102 18 3578 4249 690723633 690724318 1.630000e-144 523.0
29 TraesCS2D01G436300 chr2A 79.644 506 85 11 3689 4188 690524091 690524584 1.050000e-91 348.0
30 TraesCS2D01G436300 chr2A 80.726 358 38 14 3625 3973 690732631 690732966 3.060000e-62 250.0
31 TraesCS2D01G436300 chr2A 88.806 134 15 0 1002 1135 690729265 690729398 1.140000e-36 165.0
32 TraesCS2D01G436300 chr2A 96.512 86 3 0 990 1075 690520470 690520555 5.340000e-30 143.0
33 TraesCS2D01G436300 chr7B 89.130 92 10 0 3272 3363 97382952 97383043 1.160000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G436300 chr2D 547017010 547022122 5112 False 3000.000000 7849 98.571333 1 5113 3 chr2D.!!$F2 5112
1 TraesCS2D01G436300 chr2D 547034759 547035997 1238 True 1659.000000 1659 90.816000 990 2243 1 chr2D.!!$R1 1253
2 TraesCS2D01G436300 chr2D 547150386 547152288 1902 False 661.500000 678 80.147000 1245 3095 2 chr2D.!!$F3 1850
3 TraesCS2D01G436300 chr2D 555108775 555109466 691 False 652.000000 652 83.921000 2559 3256 1 chr2D.!!$F1 697
4 TraesCS2D01G436300 chr2D 547200841 547203816 2975 False 364.120000 750 86.778200 1002 4069 5 chr2D.!!$F4 3067
5 TraesCS2D01G436300 chr2B 653687381 653689226 1845 False 1262.000000 1262 79.433000 1385 3256 1 chr2B.!!$F1 1871
6 TraesCS2D01G436300 chr2B 653657747 653663609 5862 False 935.071429 5136 92.747286 1 4947 7 chr2B.!!$F2 4946
7 TraesCS2D01G436300 chr2B 653669235 653670804 1569 False 550.000000 625 81.278000 2547 4249 2 chr2B.!!$F3 1702
8 TraesCS2D01G436300 chr2A 689597212 689600465 3253 False 4844.000000 4844 93.618000 990 4236 1 chr2A.!!$F1 3246
9 TraesCS2D01G436300 chr2A 690721389 690724318 2929 False 633.333333 785 80.053333 1245 4249 3 chr2A.!!$F3 3004
10 TraesCS2D01G436300 chr2A 690729265 690732966 3701 False 426.250000 645 82.907500 1002 3973 4 chr2A.!!$F4 2971
11 TraesCS2D01G436300 chr2A 690520470 690524584 4114 False 378.000000 643 86.958667 990 4188 3 chr2A.!!$F2 3198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 447 1.144276 GTCTTCTTCTAGCCGCCCC 59.856 63.158 0.0 0.0 0.00 5.80 F
1287 2765 0.099436 GTTCCGATGAATGCACCAGC 59.901 55.000 0.0 0.0 42.57 4.85 F
1555 3036 0.249911 GGTGTACCGCATCAGATCCC 60.250 60.000 0.0 0.0 0.00 3.85 F
3132 4996 1.379642 GCATTGAGGCTAGGTGGTGC 61.380 60.000 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 2819 0.392327 TGATTGCGGCGGATTCTTGA 60.392 50.0 20.80 0.00 0.00 3.02 R
3132 4996 0.249489 GGAGACCATCGGATCCGTTG 60.249 60.0 32.15 31.03 40.74 4.10 R
3491 5357 6.540438 ACCTCTAGTTTCATAACGGAATGA 57.460 37.5 0.00 0.00 39.31 2.57 R
5036 8021 0.098376 GTCGCTAACTGACCGTCGAT 59.902 55.0 0.00 0.00 0.00 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.781067 TGTAAAAGATGTTCACGAATTTTGAG 57.219 30.769 0.00 0.00 0.00 3.02
94 95 3.872182 TCGAAAGATGTTCACGGTTTCAA 59.128 39.130 0.00 0.00 33.31 2.69
107 108 5.926542 TCACGGTTTCAAAAATGTTCACAAA 59.073 32.000 0.00 0.00 0.00 2.83
290 319 7.551617 AGAAAATAACCGGTGGAGTATAAACAG 59.448 37.037 8.52 0.00 0.00 3.16
291 320 6.549433 AATAACCGGTGGAGTATAAACAGA 57.451 37.500 8.52 0.00 0.00 3.41
293 322 2.498885 ACCGGTGGAGTATAAACAGACC 59.501 50.000 6.12 0.00 0.00 3.85
295 324 2.424601 CGGTGGAGTATAAACAGACCGA 59.575 50.000 0.00 0.00 42.20 4.69
346 375 3.387947 CAACCTACGCCCCCGTCT 61.388 66.667 0.00 0.00 46.39 4.18
408 447 1.144276 GTCTTCTTCTAGCCGCCCC 59.856 63.158 0.00 0.00 0.00 5.80
512 1445 1.754226 GGGAAACAACCTTCACTTGCA 59.246 47.619 0.00 0.00 0.00 4.08
896 1836 6.147000 ACAACATTAATCGGTTTGGATTTTGC 59.853 34.615 0.00 0.00 37.74 3.68
915 1855 2.029739 TGCTCGTTCATCTCCGTTGTTA 60.030 45.455 0.00 0.00 0.00 2.41
931 1871 1.557832 TGTTAGCTAGGGTTTGGCGAT 59.442 47.619 0.00 0.00 0.00 4.58
960 1900 3.782046 CACCACGGATAGAACGAGATTT 58.218 45.455 0.00 0.00 34.93 2.17
961 1901 4.735578 GCACCACGGATAGAACGAGATTTA 60.736 45.833 0.00 0.00 34.93 1.40
962 1902 4.976731 CACCACGGATAGAACGAGATTTAG 59.023 45.833 0.00 0.00 34.93 1.85
963 1903 4.643784 ACCACGGATAGAACGAGATTTAGT 59.356 41.667 0.00 0.00 34.93 2.24
970 1910 9.941664 CGGATAGAACGAGATTTAGTTTTACTA 57.058 33.333 0.00 0.00 0.00 1.82
1099 2250 3.781770 GATCAGCTCCGCCGACAGG 62.782 68.421 0.00 0.00 41.62 4.00
1171 2511 3.705043 AGAAGCACAAAACTGAAGCAG 57.295 42.857 0.00 0.00 37.52 4.24
1174 2514 3.637998 AGCACAAAACTGAAGCAGATG 57.362 42.857 0.82 0.73 35.18 2.90
1177 2655 4.580167 AGCACAAAACTGAAGCAGATGTTA 59.420 37.500 0.82 0.00 35.18 2.41
1179 2657 5.733091 GCACAAAACTGAAGCAGATGTTACA 60.733 40.000 0.82 0.00 35.18 2.41
1229 2707 4.359706 AGTGCATCTTTTCCAACGAAAAC 58.640 39.130 0.00 0.00 41.88 2.43
1281 2759 1.353103 CCGCTGTTCCGATGAATGC 59.647 57.895 0.00 0.00 31.98 3.56
1287 2765 0.099436 GTTCCGATGAATGCACCAGC 59.901 55.000 0.00 0.00 42.57 4.85
1290 2768 2.410469 GATGAATGCACCAGCCGC 59.590 61.111 0.00 0.00 41.13 6.53
1341 2819 1.067295 TTGCCATCCAGGAACAGAGT 58.933 50.000 0.00 0.00 41.22 3.24
1375 2856 6.366630 GCCGCAATCAAGATAGATAAAGAAC 58.633 40.000 0.00 0.00 0.00 3.01
1415 2896 1.067060 GTTGAACAAGTTGGGAGTGGC 59.933 52.381 7.96 0.00 0.00 5.01
1555 3036 0.249911 GGTGTACCGCATCAGATCCC 60.250 60.000 0.00 0.00 0.00 3.85
1584 3065 3.994931 TCATCCATCCATGCCTCTATG 57.005 47.619 0.00 0.00 0.00 2.23
1678 3183 9.154632 TCTATCCTACATATGCTGGTTTTCTTA 57.845 33.333 1.58 0.00 0.00 2.10
1804 3309 2.559440 CCTATGGAGCTTCTTGACAGC 58.441 52.381 0.00 0.00 37.56 4.40
2156 3814 4.789012 ACAGAGCAATTTACATGTTGGG 57.211 40.909 2.30 0.00 0.00 4.12
2323 3985 4.415596 AGTGCCAACCAGGATATTTTTCA 58.584 39.130 0.00 0.00 41.22 2.69
2365 4027 6.567050 TCTTGATGCTCATATTTCTTTTGCC 58.433 36.000 0.00 0.00 0.00 4.52
2492 4170 5.562890 GCTTGTCCTGTATCAAACCTTGTTC 60.563 44.000 0.00 0.00 0.00 3.18
2620 4450 1.599542 GATTGGGAGTACGCTGATTGC 59.400 52.381 0.00 0.00 38.57 3.56
3132 4996 1.379642 GCATTGAGGCTAGGTGGTGC 61.380 60.000 0.00 0.00 0.00 5.01
3412 5278 2.880890 ACAATGCACAGGAGAGTTTCAC 59.119 45.455 0.00 0.00 0.00 3.18
3491 5357 7.741027 CATTGAGTATGCCATAGAGTTTGAT 57.259 36.000 0.00 0.00 0.00 2.57
3589 5455 7.907563 GCTTATCTCTTTTGCTTCACAGATAAC 59.092 37.037 0.00 0.00 32.19 1.89
3771 5644 3.953712 TTCACGTCTGATTGCCTTAGA 57.046 42.857 0.00 0.00 0.00 2.10
4103 6786 8.500753 ACAGCGATTGTATGATTTTACCTTTA 57.499 30.769 0.00 0.00 38.56 1.85
4201 6895 0.310543 TCGCTGGTGCAATGAACAAC 59.689 50.000 0.00 0.00 39.64 3.32
4269 6963 8.877864 AGTACATTTGGGATCTGAACAAATAA 57.122 30.769 13.99 6.84 41.41 1.40
4360 7054 5.533528 GGTCCCTGTAATTTAACACAACACT 59.466 40.000 0.00 0.00 0.00 3.55
4363 7057 7.434013 GTCCCTGTAATTTAACACAACACTTTG 59.566 37.037 0.00 0.00 38.83 2.77
4409 7132 8.934825 GCCTTCATTTTTATTTGCATTGTAAGA 58.065 29.630 0.00 0.00 0.00 2.10
4448 7171 7.692460 ATTTCATACTGCACAGATTGAAAGA 57.308 32.000 23.46 12.29 41.29 2.52
4460 7183 7.014115 CACAGATTGAAAGAGAAGATTCAACG 58.986 38.462 3.33 0.00 45.34 4.10
4464 7187 4.315803 TGAAAGAGAAGATTCAACGGGTC 58.684 43.478 0.00 0.00 32.89 4.46
4531 7254 2.943036 TTTGAGTAAAGGCTTCCGGT 57.057 45.000 0.00 0.00 0.00 5.28
4532 7255 4.320870 CTTTTGAGTAAAGGCTTCCGGTA 58.679 43.478 0.00 0.00 39.68 4.02
4540 7263 6.420638 AGTAAAGGCTTCCGGTATACATTTT 58.579 36.000 0.00 0.00 0.00 1.82
4551 7274 6.608405 TCCGGTATACATTTTCTCCTCTTGTA 59.392 38.462 0.00 0.00 0.00 2.41
4560 7283 8.138712 ACATTTTCTCCTCTTGTAGATATCGTC 58.861 37.037 0.00 0.00 0.00 4.20
4583 7306 6.958193 GTCGATGACTTTTAATTGCTGAGAAG 59.042 38.462 0.00 0.00 0.00 2.85
4625 7348 3.401033 TCGCTGAGAAGAACAATTGGA 57.599 42.857 10.83 0.00 0.00 3.53
4653 7377 4.828939 TCCTTTTCTTCACATCATTGCTGT 59.171 37.500 0.00 0.00 0.00 4.40
4671 7395 2.564062 CTGTTCCACGGTTCTACCCTTA 59.436 50.000 0.00 0.00 33.75 2.69
4673 7397 3.583966 TGTTCCACGGTTCTACCCTTATT 59.416 43.478 0.00 0.00 33.75 1.40
4676 7400 5.245584 TCCACGGTTCTACCCTTATTTTT 57.754 39.130 0.00 0.00 33.75 1.94
4730 7457 7.642194 CGAGTAGAAGAATAGACAGTTAGCAAG 59.358 40.741 0.00 0.00 0.00 4.01
4735 7462 6.859112 AGAATAGACAGTTAGCAAGAAGGA 57.141 37.500 0.00 0.00 0.00 3.36
4736 7463 7.430760 AGAATAGACAGTTAGCAAGAAGGAT 57.569 36.000 0.00 0.00 0.00 3.24
4743 7470 7.010339 ACAGTTAGCAAGAAGGATAGAAAGT 57.990 36.000 0.00 0.00 0.00 2.66
4746 7473 9.255304 CAGTTAGCAAGAAGGATAGAAAGTATC 57.745 37.037 0.00 0.00 0.00 2.24
4747 7474 8.138712 AGTTAGCAAGAAGGATAGAAAGTATCG 58.861 37.037 0.00 0.00 0.00 2.92
4748 7475 5.293560 AGCAAGAAGGATAGAAAGTATCGC 58.706 41.667 0.00 0.00 0.00 4.58
4749 7476 5.069781 AGCAAGAAGGATAGAAAGTATCGCT 59.930 40.000 0.00 0.00 0.00 4.93
4750 7477 5.755861 GCAAGAAGGATAGAAAGTATCGCTT 59.244 40.000 0.00 0.00 39.52 4.68
4752 7479 7.201652 GCAAGAAGGATAGAAAGTATCGCTTTT 60.202 37.037 0.00 0.00 46.54 2.27
4753 7480 7.778470 AGAAGGATAGAAAGTATCGCTTTTG 57.222 36.000 0.00 0.00 46.54 2.44
4754 7481 5.993106 AGGATAGAAAGTATCGCTTTTGC 57.007 39.130 0.00 0.00 46.54 3.68
4755 7482 5.428253 AGGATAGAAAGTATCGCTTTTGCA 58.572 37.500 0.00 0.00 46.54 4.08
4756 7483 5.294552 AGGATAGAAAGTATCGCTTTTGCAC 59.705 40.000 0.00 0.00 46.54 4.57
4757 7484 5.064707 GGATAGAAAGTATCGCTTTTGCACA 59.935 40.000 0.00 0.00 46.54 4.57
4758 7485 4.829064 AGAAAGTATCGCTTTTGCACAA 57.171 36.364 0.00 0.00 46.54 3.33
4761 7488 3.674753 AAAGTATCGCTTTTGCACAATGC 59.325 39.130 0.00 0.00 44.41 3.56
4763 7490 6.576307 AAAGTATCGCTTTTGCACAATGCTG 61.576 40.000 2.02 9.38 44.41 4.41
4765 7492 2.908817 GCTTTTGCACAATGCTGCT 58.091 47.368 0.00 0.00 45.31 4.24
4766 7493 2.068837 GCTTTTGCACAATGCTGCTA 57.931 45.000 0.00 0.20 45.31 3.49
4767 7494 2.613691 GCTTTTGCACAATGCTGCTAT 58.386 42.857 0.00 0.00 45.31 2.97
4768 7495 2.997986 GCTTTTGCACAATGCTGCTATT 59.002 40.909 0.00 0.00 45.31 1.73
4769 7496 3.434299 GCTTTTGCACAATGCTGCTATTT 59.566 39.130 0.00 0.00 45.31 1.40
4770 7497 4.435121 GCTTTTGCACAATGCTGCTATTTC 60.435 41.667 0.00 0.00 45.31 2.17
4771 7498 3.938289 TTGCACAATGCTGCTATTTCA 57.062 38.095 0.00 0.00 45.31 2.69
4775 7502 5.342433 TGCACAATGCTGCTATTTCAATAC 58.658 37.500 0.00 0.00 45.31 1.89
4776 7503 5.105837 TGCACAATGCTGCTATTTCAATACA 60.106 36.000 0.00 0.00 45.31 2.29
4777 7504 5.981315 GCACAATGCTGCTATTTCAATACAT 59.019 36.000 0.00 0.00 40.96 2.29
4779 7506 7.648908 GCACAATGCTGCTATTTCAATACATTA 59.351 33.333 0.00 0.00 40.96 1.90
4780 7507 8.961092 CACAATGCTGCTATTTCAATACATTAC 58.039 33.333 0.00 0.00 0.00 1.89
4782 7509 9.740239 CAATGCTGCTATTTCAATACATTACTT 57.260 29.630 0.00 0.00 0.00 2.24
4784 7511 8.737168 TGCTGCTATTTCAATACATTACTTCT 57.263 30.769 0.00 0.00 0.00 2.85
4787 7514 9.443283 CTGCTATTTCAATACATTACTTCTTGC 57.557 33.333 0.00 0.00 0.00 4.01
4789 7516 9.956720 GCTATTTCAATACATTACTTCTTGCAT 57.043 29.630 0.00 0.00 0.00 3.96
4793 7520 9.624697 TTTCAATACATTACTTCTTGCATTCAC 57.375 29.630 0.00 0.00 0.00 3.18
4795 7522 8.959548 TCAATACATTACTTCTTGCATTCACAT 58.040 29.630 0.00 0.00 0.00 3.21
4798 7525 7.928307 ACATTACTTCTTGCATTCACATACT 57.072 32.000 0.00 0.00 0.00 2.12
4799 7526 7.978982 ACATTACTTCTTGCATTCACATACTC 58.021 34.615 0.00 0.00 0.00 2.59
4800 7527 7.607607 ACATTACTTCTTGCATTCACATACTCA 59.392 33.333 0.00 0.00 0.00 3.41
4801 7528 8.618677 CATTACTTCTTGCATTCACATACTCAT 58.381 33.333 0.00 0.00 0.00 2.90
4802 7529 6.432607 ACTTCTTGCATTCACATACTCATG 57.567 37.500 0.00 0.00 38.21 3.07
4805 7532 7.338703 ACTTCTTGCATTCACATACTCATGAAT 59.661 33.333 0.00 0.00 44.52 2.57
4813 7540 4.156455 ACATACTCATGAATGTGACCCC 57.844 45.455 7.96 0.00 35.06 4.95
4815 7542 2.496899 ACTCATGAATGTGACCCCAC 57.503 50.000 0.00 0.00 43.46 4.61
4817 7544 6.656266 CATACTCATGAATGTGACCCCACAC 61.656 48.000 0.00 0.00 44.03 3.82
4823 7550 4.043168 GTGACCCCACACGAACAG 57.957 61.111 0.00 0.00 42.72 3.16
4824 7551 1.145377 GTGACCCCACACGAACAGT 59.855 57.895 0.00 0.00 42.72 3.55
4826 7553 1.001633 GTGACCCCACACGAACAGTAT 59.998 52.381 0.00 0.00 42.72 2.12
4827 7554 2.231964 GTGACCCCACACGAACAGTATA 59.768 50.000 0.00 0.00 42.72 1.47
4828 7555 3.101437 TGACCCCACACGAACAGTATAT 58.899 45.455 0.00 0.00 0.00 0.86
4829 7556 3.131577 TGACCCCACACGAACAGTATATC 59.868 47.826 0.00 0.00 0.00 1.63
4831 7558 2.124903 CCCACACGAACAGTATATCGC 58.875 52.381 0.00 0.00 42.61 4.58
4832 7559 2.223735 CCCACACGAACAGTATATCGCT 60.224 50.000 0.00 0.00 42.61 4.93
4834 7561 3.486108 CCACACGAACAGTATATCGCTTC 59.514 47.826 0.00 0.00 42.61 3.86
4835 7562 3.486108 CACACGAACAGTATATCGCTTCC 59.514 47.826 0.00 0.00 42.61 3.46
4836 7563 3.050619 CACGAACAGTATATCGCTTCCC 58.949 50.000 0.00 0.00 42.61 3.97
4837 7564 2.035576 ACGAACAGTATATCGCTTCCCC 59.964 50.000 0.00 0.00 42.61 4.81
4838 7565 2.035449 CGAACAGTATATCGCTTCCCCA 59.965 50.000 0.00 0.00 31.71 4.96
4841 7568 4.706842 ACAGTATATCGCTTCCCCATTT 57.293 40.909 0.00 0.00 0.00 2.32
4842 7569 5.818678 ACAGTATATCGCTTCCCCATTTA 57.181 39.130 0.00 0.00 0.00 1.40
4843 7570 5.548406 ACAGTATATCGCTTCCCCATTTAC 58.452 41.667 0.00 0.00 0.00 2.01
4845 7572 5.995282 CAGTATATCGCTTCCCCATTTACAA 59.005 40.000 0.00 0.00 0.00 2.41
4846 7573 6.485313 CAGTATATCGCTTCCCCATTTACAAA 59.515 38.462 0.00 0.00 0.00 2.83
4848 7575 3.926821 TCGCTTCCCCATTTACAAAAC 57.073 42.857 0.00 0.00 0.00 2.43
4849 7576 3.223435 TCGCTTCCCCATTTACAAAACA 58.777 40.909 0.00 0.00 0.00 2.83
4850 7577 3.829601 TCGCTTCCCCATTTACAAAACAT 59.170 39.130 0.00 0.00 0.00 2.71
4851 7578 3.925913 CGCTTCCCCATTTACAAAACATG 59.074 43.478 0.00 0.00 0.00 3.21
4852 7579 4.321601 CGCTTCCCCATTTACAAAACATGA 60.322 41.667 0.00 0.00 0.00 3.07
4853 7580 4.929211 GCTTCCCCATTTACAAAACATGAC 59.071 41.667 0.00 0.00 0.00 3.06
4854 7581 4.775058 TCCCCATTTACAAAACATGACG 57.225 40.909 0.00 0.00 0.00 4.35
4855 7582 4.399219 TCCCCATTTACAAAACATGACGA 58.601 39.130 0.00 0.00 0.00 4.20
4856 7583 4.827835 TCCCCATTTACAAAACATGACGAA 59.172 37.500 0.00 0.00 0.00 3.85
4858 7585 5.404066 CCCCATTTACAAAACATGACGAAAC 59.596 40.000 0.00 0.00 0.00 2.78
4859 7586 5.116377 CCCATTTACAAAACATGACGAAACG 59.884 40.000 0.00 0.00 0.00 3.60
4860 7587 5.386933 CCATTTACAAAACATGACGAAACGC 60.387 40.000 0.00 0.00 0.00 4.84
4862 7589 5.654317 TTACAAAACATGACGAAACGCTA 57.346 34.783 0.00 0.00 0.00 4.26
4863 7590 4.742438 ACAAAACATGACGAAACGCTAT 57.258 36.364 0.00 0.00 0.00 2.97
4864 7591 5.849357 ACAAAACATGACGAAACGCTATA 57.151 34.783 0.00 0.00 0.00 1.31
4866 7593 6.304126 ACAAAACATGACGAAACGCTATAAG 58.696 36.000 0.00 0.00 0.00 1.73
4867 7594 6.146510 ACAAAACATGACGAAACGCTATAAGA 59.853 34.615 0.00 0.00 0.00 2.10
4868 7595 5.950965 AACATGACGAAACGCTATAAGAG 57.049 39.130 0.00 0.00 0.00 2.85
4869 7596 4.995124 ACATGACGAAACGCTATAAGAGT 58.005 39.130 0.00 0.00 0.00 3.24
4870 7597 4.798907 ACATGACGAAACGCTATAAGAGTG 59.201 41.667 0.00 0.00 41.81 3.51
4872 7599 3.441222 TGACGAAACGCTATAAGAGTGGA 59.559 43.478 0.00 0.00 40.24 4.02
4873 7600 4.082625 TGACGAAACGCTATAAGAGTGGAA 60.083 41.667 0.00 0.00 40.24 3.53
4874 7601 5.007385 ACGAAACGCTATAAGAGTGGAAT 57.993 39.130 0.00 0.00 40.24 3.01
4875 7602 5.416947 ACGAAACGCTATAAGAGTGGAATT 58.583 37.500 0.00 0.00 40.24 2.17
4877 7604 7.208080 ACGAAACGCTATAAGAGTGGAATTAT 58.792 34.615 0.00 0.00 40.24 1.28
4878 7605 7.169308 ACGAAACGCTATAAGAGTGGAATTATG 59.831 37.037 0.00 0.00 40.24 1.90
4879 7606 6.787085 AACGCTATAAGAGTGGAATTATGC 57.213 37.500 0.00 0.00 40.24 3.14
4880 7607 4.923871 ACGCTATAAGAGTGGAATTATGCG 59.076 41.667 0.00 0.00 40.53 4.73
4881 7608 5.161358 CGCTATAAGAGTGGAATTATGCGA 58.839 41.667 0.00 0.00 39.03 5.10
4886 7613 9.295214 CTATAAGAGTGGAATTATGCGACATAG 57.705 37.037 0.00 0.00 0.00 2.23
4887 7614 5.791336 AGAGTGGAATTATGCGACATAGA 57.209 39.130 0.00 0.00 0.00 1.98
4888 7615 5.533482 AGAGTGGAATTATGCGACATAGAC 58.467 41.667 0.00 0.00 0.00 2.59
4889 7616 4.299155 AGTGGAATTATGCGACATAGACG 58.701 43.478 0.00 0.00 0.00 4.18
4892 7619 4.982295 TGGAATTATGCGACATAGACGAAG 59.018 41.667 0.00 0.00 0.00 3.79
4893 7620 4.143305 GGAATTATGCGACATAGACGAAGC 60.143 45.833 0.00 0.00 0.00 3.86
4894 7621 2.032414 TATGCGACATAGACGAAGCG 57.968 50.000 0.00 0.00 0.00 4.68
4896 7623 1.586564 GCGACATAGACGAAGCGCT 60.587 57.895 2.64 2.64 41.09 5.92
4897 7624 0.316772 GCGACATAGACGAAGCGCTA 60.317 55.000 12.05 0.00 41.09 4.26
4899 7626 2.412455 GCGACATAGACGAAGCGCTATA 60.412 50.000 12.05 0.00 41.09 1.31
4900 7627 3.806958 CGACATAGACGAAGCGCTATAA 58.193 45.455 12.05 0.00 30.12 0.98
4901 7628 3.841317 CGACATAGACGAAGCGCTATAAG 59.159 47.826 12.05 4.95 30.12 1.73
4902 7629 4.377124 CGACATAGACGAAGCGCTATAAGA 60.377 45.833 12.05 0.00 30.12 2.10
4916 7901 3.366070 GCTATAAGAGCGGAACTATGCGA 60.366 47.826 0.00 0.00 43.91 5.10
4947 7932 6.828273 ACAATCATATTTCCGAACCAAGATCA 59.172 34.615 0.00 0.00 0.00 2.92
4948 7933 7.339212 ACAATCATATTTCCGAACCAAGATCAA 59.661 33.333 0.00 0.00 0.00 2.57
4949 7934 6.677781 TCATATTTCCGAACCAAGATCAAC 57.322 37.500 0.00 0.00 0.00 3.18
4950 7935 5.588648 TCATATTTCCGAACCAAGATCAACC 59.411 40.000 0.00 0.00 0.00 3.77
4951 7936 3.502123 TTTCCGAACCAAGATCAACCT 57.498 42.857 0.00 0.00 0.00 3.50
4952 7937 3.502123 TTCCGAACCAAGATCAACCTT 57.498 42.857 0.00 0.00 0.00 3.50
4953 7938 4.627284 TTCCGAACCAAGATCAACCTTA 57.373 40.909 0.00 0.00 0.00 2.69
4954 7939 4.202245 TCCGAACCAAGATCAACCTTAG 57.798 45.455 0.00 0.00 0.00 2.18
4955 7940 2.678336 CCGAACCAAGATCAACCTTAGC 59.322 50.000 0.00 0.00 0.00 3.09
4956 7941 2.348666 CGAACCAAGATCAACCTTAGCG 59.651 50.000 0.00 0.00 0.00 4.26
4957 7942 3.335579 GAACCAAGATCAACCTTAGCGT 58.664 45.455 0.00 0.00 0.00 5.07
4958 7943 2.699954 ACCAAGATCAACCTTAGCGTG 58.300 47.619 0.00 0.00 0.00 5.34
4959 7944 1.398390 CCAAGATCAACCTTAGCGTGC 59.602 52.381 0.00 0.00 0.00 5.34
4960 7945 2.076100 CAAGATCAACCTTAGCGTGCA 58.924 47.619 0.00 0.00 0.00 4.57
4961 7946 2.472695 AGATCAACCTTAGCGTGCAA 57.527 45.000 0.00 0.00 0.00 4.08
4962 7947 2.991250 AGATCAACCTTAGCGTGCAAT 58.009 42.857 0.00 0.00 0.00 3.56
4963 7948 3.347216 AGATCAACCTTAGCGTGCAATT 58.653 40.909 0.00 0.00 0.00 2.32
4964 7949 3.375299 AGATCAACCTTAGCGTGCAATTC 59.625 43.478 0.00 0.00 0.00 2.17
4965 7950 1.810151 TCAACCTTAGCGTGCAATTCC 59.190 47.619 0.00 0.00 0.00 3.01
4966 7951 0.802494 AACCTTAGCGTGCAATTCCG 59.198 50.000 0.00 0.00 0.00 4.30
4971 7956 4.481112 GCGTGCAATTCCGCCAGG 62.481 66.667 8.12 0.00 43.96 4.45
4972 7957 2.745884 CGTGCAATTCCGCCAGGA 60.746 61.111 0.00 0.00 46.75 3.86
4983 7968 2.435938 GCCAGGAATGCGACCGAA 60.436 61.111 0.00 0.00 0.00 4.30
4984 7969 2.750888 GCCAGGAATGCGACCGAAC 61.751 63.158 0.00 0.00 0.00 3.95
4985 7970 2.452813 CCAGGAATGCGACCGAACG 61.453 63.158 0.00 0.00 0.00 3.95
5008 7993 4.397832 GACCAGCGGGGCCGTAAA 62.398 66.667 8.08 0.00 42.05 2.01
5009 7994 4.710167 ACCAGCGGGGCCGTAAAC 62.710 66.667 8.08 0.00 42.05 2.01
5011 7996 4.708386 CAGCGGGGCCGTAAACCA 62.708 66.667 0.00 0.00 42.09 3.67
5012 7997 3.723922 AGCGGGGCCGTAAACCAT 61.724 61.111 0.00 0.00 42.09 3.55
5013 7998 2.752640 GCGGGGCCGTAAACCATT 60.753 61.111 0.00 0.00 42.09 3.16
5014 7999 1.451747 GCGGGGCCGTAAACCATTA 60.452 57.895 0.00 0.00 42.09 1.90
5015 8000 0.820482 GCGGGGCCGTAAACCATTAT 60.820 55.000 0.00 0.00 42.09 1.28
5016 8001 1.232119 CGGGGCCGTAAACCATTATC 58.768 55.000 0.00 0.00 34.35 1.75
5017 8002 1.475392 CGGGGCCGTAAACCATTATCA 60.475 52.381 0.00 0.00 34.35 2.15
5018 8003 1.951602 GGGGCCGTAAACCATTATCAC 59.048 52.381 0.00 0.00 0.00 3.06
5019 8004 1.951602 GGGCCGTAAACCATTATCACC 59.048 52.381 0.00 0.00 0.00 4.02
5020 8005 2.422377 GGGCCGTAAACCATTATCACCT 60.422 50.000 0.00 0.00 0.00 4.00
5021 8006 2.876550 GGCCGTAAACCATTATCACCTC 59.123 50.000 0.00 0.00 0.00 3.85
5022 8007 3.537580 GCCGTAAACCATTATCACCTCA 58.462 45.455 0.00 0.00 0.00 3.86
5023 8008 3.311596 GCCGTAAACCATTATCACCTCAC 59.688 47.826 0.00 0.00 0.00 3.51
5024 8009 4.509616 CCGTAAACCATTATCACCTCACA 58.490 43.478 0.00 0.00 0.00 3.58
5025 8010 5.123227 CCGTAAACCATTATCACCTCACAT 58.877 41.667 0.00 0.00 0.00 3.21
5026 8011 5.007626 CCGTAAACCATTATCACCTCACATG 59.992 44.000 0.00 0.00 0.00 3.21
5027 8012 5.584649 CGTAAACCATTATCACCTCACATGT 59.415 40.000 0.00 0.00 0.00 3.21
5028 8013 5.902613 AAACCATTATCACCTCACATGTG 57.097 39.130 20.18 20.18 35.01 3.21
5029 8014 4.842531 ACCATTATCACCTCACATGTGA 57.157 40.909 26.33 26.33 45.98 3.58
5042 8027 3.924073 TCACATGTGAGGTTTAATCGACG 59.076 43.478 24.56 0.00 34.14 5.12
5043 8028 3.062099 CACATGTGAGGTTTAATCGACGG 59.938 47.826 21.64 0.00 0.00 4.79
5044 8029 3.259064 CATGTGAGGTTTAATCGACGGT 58.741 45.455 0.00 0.00 0.00 4.83
5045 8030 2.950433 TGTGAGGTTTAATCGACGGTC 58.050 47.619 0.00 0.00 0.00 4.79
5046 8031 2.296752 TGTGAGGTTTAATCGACGGTCA 59.703 45.455 9.10 0.00 0.00 4.02
5047 8032 2.921754 GTGAGGTTTAATCGACGGTCAG 59.078 50.000 9.10 1.49 0.00 3.51
5048 8033 2.559668 TGAGGTTTAATCGACGGTCAGT 59.440 45.455 9.10 0.00 0.00 3.41
5049 8034 3.006110 TGAGGTTTAATCGACGGTCAGTT 59.994 43.478 9.10 4.76 0.00 3.16
5050 8035 4.218200 TGAGGTTTAATCGACGGTCAGTTA 59.782 41.667 9.10 3.80 0.00 2.24
5051 8036 4.741342 AGGTTTAATCGACGGTCAGTTAG 58.259 43.478 9.10 0.00 0.00 2.34
5052 8037 3.305361 GGTTTAATCGACGGTCAGTTAGC 59.695 47.826 9.10 4.10 0.00 3.09
5074 8059 2.047002 CATGCTGTCCATGTCATCCA 57.953 50.000 0.00 0.00 45.05 3.41
5075 8060 1.674441 CATGCTGTCCATGTCATCCAC 59.326 52.381 0.00 0.00 45.05 4.02
5076 8061 0.391528 TGCTGTCCATGTCATCCACG 60.392 55.000 0.00 0.00 0.00 4.94
5077 8062 0.108186 GCTGTCCATGTCATCCACGA 60.108 55.000 0.00 0.00 0.00 4.35
5078 8063 1.473965 GCTGTCCATGTCATCCACGAT 60.474 52.381 0.00 0.00 0.00 3.73
5079 8064 2.207590 CTGTCCATGTCATCCACGATG 58.792 52.381 0.00 0.00 41.00 3.84
5080 8065 1.830477 TGTCCATGTCATCCACGATGA 59.170 47.619 0.16 0.16 45.35 2.92
5087 8072 2.561733 TCATCCACGATGAACGAGTC 57.438 50.000 1.85 0.00 44.70 3.36
5088 8073 1.134367 TCATCCACGATGAACGAGTCC 59.866 52.381 1.85 0.00 44.70 3.85
5089 8074 1.135139 CATCCACGATGAACGAGTCCT 59.865 52.381 0.00 0.00 42.09 3.85
5090 8075 0.809385 TCCACGATGAACGAGTCCTC 59.191 55.000 0.00 0.00 45.77 3.71
5091 8076 0.179134 CCACGATGAACGAGTCCTCC 60.179 60.000 0.00 0.00 45.77 4.30
5092 8077 0.811915 CACGATGAACGAGTCCTCCT 59.188 55.000 0.00 0.00 45.77 3.69
5093 8078 1.202582 CACGATGAACGAGTCCTCCTT 59.797 52.381 0.00 0.00 45.77 3.36
5094 8079 1.202582 ACGATGAACGAGTCCTCCTTG 59.797 52.381 0.00 0.00 45.77 3.61
5095 8080 1.472878 CGATGAACGAGTCCTCCTTGA 59.527 52.381 0.00 0.00 45.77 3.02
5096 8081 2.732597 CGATGAACGAGTCCTCCTTGAC 60.733 54.545 0.00 0.00 45.77 3.18
5097 8082 0.966920 TGAACGAGTCCTCCTTGACC 59.033 55.000 0.00 0.00 35.83 4.02
5098 8083 0.109226 GAACGAGTCCTCCTTGACCG 60.109 60.000 0.00 0.00 35.83 4.79
5099 8084 2.156051 AACGAGTCCTCCTTGACCGC 62.156 60.000 0.00 0.00 35.83 5.68
5100 8085 2.636412 CGAGTCCTCCTTGACCGCA 61.636 63.158 0.00 0.00 35.83 5.69
5101 8086 1.671742 GAGTCCTCCTTGACCGCAA 59.328 57.895 0.00 0.00 35.83 4.85
5110 8095 2.813779 CTTGACCGCAAGCAGAATAC 57.186 50.000 0.00 0.00 44.41 1.89
5111 8096 1.398390 CTTGACCGCAAGCAGAATACC 59.602 52.381 0.00 0.00 44.41 2.73
5112 8097 0.739462 TGACCGCAAGCAGAATACCG 60.739 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.445786 TTCTCAAAATTCGTGAACATCTTTTAC 57.554 29.630 0.00 0.00 0.00 2.01
15 16 8.925161 TTTCTCAAAATTCGTGAACATCTTTT 57.075 26.923 0.00 0.00 0.00 2.27
265 292 7.550196 TCTGTTTATACTCCACCGGTTATTTTC 59.450 37.037 2.97 0.00 0.00 2.29
270 299 4.160252 GGTCTGTTTATACTCCACCGGTTA 59.840 45.833 2.97 0.00 0.00 2.85
275 304 3.737355 GCTCGGTCTGTTTATACTCCACC 60.737 52.174 0.00 0.00 0.00 4.61
276 305 3.445857 GCTCGGTCTGTTTATACTCCAC 58.554 50.000 0.00 0.00 0.00 4.02
290 319 0.741221 GATCCAGTGTTGGCTCGGTC 60.741 60.000 0.00 0.00 44.63 4.79
291 320 1.194781 AGATCCAGTGTTGGCTCGGT 61.195 55.000 0.00 0.00 43.02 4.69
293 322 1.364626 GCAGATCCAGTGTTGGCTCG 61.365 60.000 0.00 0.00 43.02 5.03
295 324 1.376424 CGCAGATCCAGTGTTGGCT 60.376 57.895 0.00 0.00 44.63 4.75
377 416 0.605589 AGAAGACTTGAGGCCAGACG 59.394 55.000 5.01 0.00 0.00 4.18
378 417 2.301583 AGAAGAAGACTTGAGGCCAGAC 59.698 50.000 5.01 0.00 36.39 3.51
379 418 2.614259 AGAAGAAGACTTGAGGCCAGA 58.386 47.619 5.01 0.00 36.39 3.86
380 419 3.678529 GCTAGAAGAAGACTTGAGGCCAG 60.679 52.174 5.01 0.00 36.39 4.85
381 420 2.234908 GCTAGAAGAAGACTTGAGGCCA 59.765 50.000 5.01 0.00 36.39 5.36
382 421 2.419436 GGCTAGAAGAAGACTTGAGGCC 60.419 54.545 0.00 0.00 36.31 5.19
383 422 2.737039 CGGCTAGAAGAAGACTTGAGGC 60.737 54.545 0.00 0.00 37.62 4.70
384 423 2.737039 GCGGCTAGAAGAAGACTTGAGG 60.737 54.545 0.00 0.00 36.39 3.86
408 447 0.323908 AGAGAGGGAGACAAGACGGG 60.324 60.000 0.00 0.00 0.00 5.28
410 449 0.730265 CGAGAGAGGGAGACAAGACG 59.270 60.000 0.00 0.00 0.00 4.18
419 458 1.744114 CGATCTGACACGAGAGAGGGA 60.744 57.143 0.00 0.00 0.00 4.20
512 1445 3.853597 GACCCGACGCGTGGAAGTT 62.854 63.158 23.51 3.22 0.00 2.66
876 1816 5.105917 ACGAGCAAAATCCAAACCGATTAAT 60.106 36.000 0.00 0.00 32.12 1.40
896 1836 2.599082 GCTAACAACGGAGATGAACGAG 59.401 50.000 0.00 0.00 33.32 4.18
915 1855 0.839946 ATCATCGCCAAACCCTAGCT 59.160 50.000 0.00 0.00 0.00 3.32
931 1871 0.179076 CTATCCGTGGTGCTGCATCA 60.179 55.000 12.35 12.35 0.00 3.07
960 1900 8.284945 TCTCGCCTACAAAGATAGTAAAACTA 57.715 34.615 0.00 0.00 34.82 2.24
961 1901 7.166691 TCTCGCCTACAAAGATAGTAAAACT 57.833 36.000 0.00 0.00 0.00 2.66
962 1902 7.330208 TGTTCTCGCCTACAAAGATAGTAAAAC 59.670 37.037 0.00 0.00 0.00 2.43
963 1903 7.380536 TGTTCTCGCCTACAAAGATAGTAAAA 58.619 34.615 0.00 0.00 0.00 1.52
970 1910 3.375299 GCAATGTTCTCGCCTACAAAGAT 59.625 43.478 0.00 0.00 0.00 2.40
982 1922 2.208431 CATCTCTCCGGCAATGTTCTC 58.792 52.381 0.00 0.00 0.00 2.87
1171 2511 5.470098 TGTGCTTTTTCTCTCCTGTAACATC 59.530 40.000 0.00 0.00 0.00 3.06
1174 2514 4.318831 CGTGTGCTTTTTCTCTCCTGTAAC 60.319 45.833 0.00 0.00 0.00 2.50
1177 2655 2.158957 TCGTGTGCTTTTTCTCTCCTGT 60.159 45.455 0.00 0.00 0.00 4.00
1179 2657 2.910688 TCGTGTGCTTTTTCTCTCCT 57.089 45.000 0.00 0.00 0.00 3.69
1229 2707 1.531149 CTTTGACTAGTGGCGTGGTTG 59.469 52.381 0.00 0.00 0.00 3.77
1287 2765 4.284860 TGAGCATCGATCGGGCGG 62.285 66.667 16.41 3.65 38.61 6.13
1290 2768 1.658717 GTCGTGAGCATCGATCGGG 60.659 63.158 16.41 9.28 38.61 5.14
1341 2819 0.392327 TGATTGCGGCGGATTCTTGA 60.392 50.000 20.80 0.00 0.00 3.02
1375 2856 6.001460 TCAACTTTTGGGTTATGTACTCCAG 58.999 40.000 0.00 0.00 31.47 3.86
1415 2896 5.374921 ACTCCTCAAAGCCAATATCATCTG 58.625 41.667 0.00 0.00 0.00 2.90
1542 3023 0.816825 CCTTGTGGGATCTGATGCGG 60.817 60.000 2.99 0.00 37.23 5.69
1555 3036 3.429822 GCATGGATGGATGAAACCTTGTG 60.430 47.826 0.00 0.00 32.56 3.33
1584 3065 9.846248 ACAGCATTTTTAATAGATGACTGAAAC 57.154 29.630 15.71 0.00 33.36 2.78
1604 3090 5.047872 TGCAAATGTACAGATTGAACAGCAT 60.048 36.000 21.88 0.00 0.00 3.79
1804 3309 6.019479 CGAGGAAATCTGTAGGAAATTCTTCG 60.019 42.308 0.00 0.00 41.62 3.79
2297 3958 2.638480 TATCCTGGTTGGCACTATGC 57.362 50.000 0.00 0.00 44.08 3.14
2323 3985 4.462483 TCAAGAAAGGCAATAAAGCGGAAT 59.538 37.500 0.00 0.00 34.64 3.01
2365 4027 6.916387 CAGAAAATATGCATAGGACTGCTTTG 59.084 38.462 12.79 0.00 42.75 2.77
2620 4450 2.342910 AGTAACTGCGGTACAACTCG 57.657 50.000 0.00 0.00 0.00 4.18
3087 4951 6.238566 CCATGTAAGTAAGACAATCCTGCATG 60.239 42.308 0.00 0.00 0.00 4.06
3132 4996 0.249489 GGAGACCATCGGATCCGTTG 60.249 60.000 32.15 31.03 40.74 4.10
3487 5353 7.710907 CCTCTAGTTTCATAACGGAATGATCAA 59.289 37.037 0.00 0.00 39.31 2.57
3491 5357 6.540438 ACCTCTAGTTTCATAACGGAATGA 57.460 37.500 0.00 0.00 39.31 2.57
3589 5455 4.454504 ACGTTACAAATTCTGGGCTTACAG 59.545 41.667 0.00 0.00 39.84 2.74
3771 5644 6.322126 ACTCCTGAGCTTTATCCTCTGATAT 58.678 40.000 0.00 0.00 33.54 1.63
4103 6786 8.129211 GCGCAATATGTATCTTCTTAAACCTTT 58.871 33.333 0.30 0.00 0.00 3.11
4119 6802 1.134946 GAAAAGCCAGGCGCAATATGT 59.865 47.619 10.83 0.00 41.38 2.29
4127 6810 2.604174 AACGACGAAAAGCCAGGCG 61.604 57.895 5.55 0.00 0.00 5.52
4201 6895 3.805422 AGCTACGAGTCTGATCTAGTTCG 59.195 47.826 0.00 7.13 39.07 3.95
4315 7009 8.242739 GGGACCGAAGCTTACTATTATTAGTAG 58.757 40.741 0.00 0.00 40.96 2.57
4332 7026 4.998672 TGTGTTAAATTACAGGGACCGAAG 59.001 41.667 0.00 0.00 0.00 3.79
4335 7029 4.515944 TGTTGTGTTAAATTACAGGGACCG 59.484 41.667 0.00 0.00 0.00 4.79
4360 7054 7.827236 AGGCACTAGCTTTTACATACATACAAA 59.173 33.333 0.00 0.00 41.70 2.83
4363 7057 7.494625 TGAAGGCACTAGCTTTTACATACATAC 59.505 37.037 0.00 0.00 40.49 2.39
4370 7064 6.648879 AAAATGAAGGCACTAGCTTTTACA 57.351 33.333 0.00 0.00 40.49 2.41
4371 7065 9.639601 AATAAAAATGAAGGCACTAGCTTTTAC 57.360 29.630 0.00 0.00 40.49 2.01
4373 7067 8.992073 CAAATAAAAATGAAGGCACTAGCTTTT 58.008 29.630 0.00 0.00 40.49 2.27
4374 7068 7.118245 GCAAATAAAAATGAAGGCACTAGCTTT 59.882 33.333 0.00 0.00 43.40 3.51
4375 7069 6.591448 GCAAATAAAAATGAAGGCACTAGCTT 59.409 34.615 0.00 0.00 38.49 3.74
4448 7171 2.832129 TGCTAGACCCGTTGAATCTTCT 59.168 45.455 0.00 0.00 0.00 2.85
4460 7183 5.643379 TGAAATTTCATGTTGCTAGACCC 57.357 39.130 16.91 0.00 31.01 4.46
4464 7187 5.005012 CCGCATTGAAATTTCATGTTGCTAG 59.995 40.000 29.12 22.29 36.56 3.42
4527 7250 5.671493 ACAAGAGGAGAAAATGTATACCGG 58.329 41.667 0.00 0.00 0.00 5.28
4540 7263 5.211174 TCGACGATATCTACAAGAGGAGA 57.789 43.478 0.34 0.00 0.00 3.71
4551 7274 7.653713 AGCAATTAAAAGTCATCGACGATATCT 59.346 33.333 10.57 8.86 37.67 1.98
4557 7280 5.062183 TCTCAGCAATTAAAAGTCATCGACG 59.938 40.000 0.00 0.00 37.67 5.12
4560 7283 7.065216 TCTTCTCAGCAATTAAAAGTCATCG 57.935 36.000 0.00 0.00 0.00 3.84
4583 7306 6.183359 GCGATTAAAAGACATCAACGTTGTTC 60.183 38.462 26.47 19.95 0.00 3.18
4625 7348 6.349944 GCAATGATGTGAAGAAAAGGACAGAT 60.350 38.462 0.00 0.00 0.00 2.90
4653 7377 4.914177 AAATAAGGGTAGAACCGTGGAA 57.086 40.909 0.00 0.00 39.83 3.53
4673 7397 6.041409 TGAACCAGCAATGATGTTAGGAAAAA 59.959 34.615 0.00 0.00 0.00 1.94
4676 7400 4.661222 TGAACCAGCAATGATGTTAGGAA 58.339 39.130 0.00 0.00 0.00 3.36
4677 7401 4.299586 TGAACCAGCAATGATGTTAGGA 57.700 40.909 0.00 0.00 0.00 2.94
4735 7462 8.360756 GCATTGTGCAAAAGCGATACTTTCTAT 61.361 37.037 0.00 0.00 43.40 1.98
4736 7463 7.110043 GCATTGTGCAAAAGCGATACTTTCTA 61.110 38.462 0.00 0.00 43.40 2.10
4753 7480 5.342433 TGTATTGAAATAGCAGCATTGTGC 58.658 37.500 0.00 0.00 45.46 4.57
4754 7481 7.997107 AATGTATTGAAATAGCAGCATTGTG 57.003 32.000 0.00 0.00 0.00 3.33
4755 7482 8.906867 AGTAATGTATTGAAATAGCAGCATTGT 58.093 29.630 0.00 0.00 0.00 2.71
4756 7483 9.740239 AAGTAATGTATTGAAATAGCAGCATTG 57.260 29.630 0.00 0.00 0.00 2.82
4757 7484 9.956720 GAAGTAATGTATTGAAATAGCAGCATT 57.043 29.630 0.00 0.00 0.00 3.56
4758 7485 9.347240 AGAAGTAATGTATTGAAATAGCAGCAT 57.653 29.630 0.00 0.00 0.00 3.79
4761 7488 9.443283 GCAAGAAGTAATGTATTGAAATAGCAG 57.557 33.333 0.00 0.00 0.00 4.24
4763 7490 9.956720 ATGCAAGAAGTAATGTATTGAAATAGC 57.043 29.630 0.00 0.00 0.00 2.97
4767 7494 9.624697 GTGAATGCAAGAAGTAATGTATTGAAA 57.375 29.630 0.00 0.00 32.99 2.69
4768 7495 8.791675 TGTGAATGCAAGAAGTAATGTATTGAA 58.208 29.630 0.00 0.00 32.99 2.69
4769 7496 8.334263 TGTGAATGCAAGAAGTAATGTATTGA 57.666 30.769 0.00 0.00 32.99 2.57
4775 7502 7.977904 TGAGTATGTGAATGCAAGAAGTAATG 58.022 34.615 0.00 0.00 0.00 1.90
4776 7503 8.618677 CATGAGTATGTGAATGCAAGAAGTAAT 58.381 33.333 0.00 0.00 0.00 1.89
4777 7504 7.823799 TCATGAGTATGTGAATGCAAGAAGTAA 59.176 33.333 0.00 0.00 35.73 2.24
4779 7506 6.175471 TCATGAGTATGTGAATGCAAGAAGT 58.825 36.000 0.00 0.00 35.73 3.01
4780 7507 6.673154 TCATGAGTATGTGAATGCAAGAAG 57.327 37.500 0.00 0.00 35.73 2.85
4792 7519 3.523157 TGGGGTCACATTCATGAGTATGT 59.477 43.478 7.13 7.13 36.35 2.29
4793 7520 3.879295 GTGGGGTCACATTCATGAGTATG 59.121 47.826 5.94 5.94 43.13 2.39
4795 7522 3.627395 GTGGGGTCACATTCATGAGTA 57.373 47.619 0.00 0.00 43.13 2.59
4806 7533 0.390124 TACTGTTCGTGTGGGGTCAC 59.610 55.000 0.00 0.00 43.87 3.67
4808 7535 3.714391 GATATACTGTTCGTGTGGGGTC 58.286 50.000 0.00 0.00 0.00 4.46
4809 7536 2.100252 CGATATACTGTTCGTGTGGGGT 59.900 50.000 0.00 0.00 0.00 4.95
4810 7537 2.739292 CGATATACTGTTCGTGTGGGG 58.261 52.381 0.00 0.00 0.00 4.96
4811 7538 2.124903 GCGATATACTGTTCGTGTGGG 58.875 52.381 2.78 0.00 37.66 4.61
4812 7539 3.079960 AGCGATATACTGTTCGTGTGG 57.920 47.619 2.78 0.00 37.66 4.17
4813 7540 3.486108 GGAAGCGATATACTGTTCGTGTG 59.514 47.826 2.78 0.00 37.66 3.82
4815 7542 3.050619 GGGAAGCGATATACTGTTCGTG 58.949 50.000 2.78 0.00 37.66 4.35
4817 7544 2.035449 TGGGGAAGCGATATACTGTTCG 59.965 50.000 0.00 0.00 38.37 3.95
4818 7545 3.746045 TGGGGAAGCGATATACTGTTC 57.254 47.619 0.00 0.00 0.00 3.18
4819 7546 4.706842 AATGGGGAAGCGATATACTGTT 57.293 40.909 0.00 0.00 0.00 3.16
4820 7547 4.706842 AAATGGGGAAGCGATATACTGT 57.293 40.909 0.00 0.00 0.00 3.55
4821 7548 5.547465 TGTAAATGGGGAAGCGATATACTG 58.453 41.667 0.00 0.00 0.00 2.74
4823 7550 6.870971 TTTGTAAATGGGGAAGCGATATAC 57.129 37.500 0.00 0.00 0.00 1.47
4824 7551 6.829298 TGTTTTGTAAATGGGGAAGCGATATA 59.171 34.615 0.00 0.00 0.00 0.86
4826 7553 5.010933 TGTTTTGTAAATGGGGAAGCGATA 58.989 37.500 0.00 0.00 0.00 2.92
4827 7554 3.829601 TGTTTTGTAAATGGGGAAGCGAT 59.170 39.130 0.00 0.00 0.00 4.58
4828 7555 3.223435 TGTTTTGTAAATGGGGAAGCGA 58.777 40.909 0.00 0.00 0.00 4.93
4829 7556 3.651803 TGTTTTGTAAATGGGGAAGCG 57.348 42.857 0.00 0.00 0.00 4.68
4831 7558 5.048364 TCGTCATGTTTTGTAAATGGGGAAG 60.048 40.000 0.00 0.00 0.00 3.46
4832 7559 4.827835 TCGTCATGTTTTGTAAATGGGGAA 59.172 37.500 0.00 0.00 0.00 3.97
4834 7561 4.775058 TCGTCATGTTTTGTAAATGGGG 57.225 40.909 0.00 0.00 0.00 4.96
4835 7562 5.116377 CGTTTCGTCATGTTTTGTAAATGGG 59.884 40.000 0.00 0.00 0.00 4.00
4836 7563 5.386933 GCGTTTCGTCATGTTTTGTAAATGG 60.387 40.000 0.00 0.00 0.00 3.16
4837 7564 5.398122 AGCGTTTCGTCATGTTTTGTAAATG 59.602 36.000 0.00 0.00 0.00 2.32
4838 7565 5.516090 AGCGTTTCGTCATGTTTTGTAAAT 58.484 33.333 0.00 0.00 0.00 1.40
4841 7568 5.849357 ATAGCGTTTCGTCATGTTTTGTA 57.151 34.783 0.00 0.00 0.00 2.41
4842 7569 4.742438 ATAGCGTTTCGTCATGTTTTGT 57.258 36.364 0.00 0.00 0.00 2.83
4843 7570 6.530567 TCTTATAGCGTTTCGTCATGTTTTG 58.469 36.000 0.00 0.00 0.00 2.44
4845 7572 5.867716 ACTCTTATAGCGTTTCGTCATGTTT 59.132 36.000 0.00 0.00 0.00 2.83
4846 7573 5.288712 CACTCTTATAGCGTTTCGTCATGTT 59.711 40.000 0.00 0.00 0.00 2.71
4848 7575 4.207224 CCACTCTTATAGCGTTTCGTCATG 59.793 45.833 0.00 0.00 0.00 3.07
4849 7576 4.097437 TCCACTCTTATAGCGTTTCGTCAT 59.903 41.667 0.00 0.00 0.00 3.06
4850 7577 3.441222 TCCACTCTTATAGCGTTTCGTCA 59.559 43.478 0.00 0.00 0.00 4.35
4851 7578 4.025015 TCCACTCTTATAGCGTTTCGTC 57.975 45.455 0.00 0.00 0.00 4.20
4852 7579 4.445452 TTCCACTCTTATAGCGTTTCGT 57.555 40.909 0.00 0.00 0.00 3.85
4853 7580 5.968387 AATTCCACTCTTATAGCGTTTCG 57.032 39.130 0.00 0.00 0.00 3.46
4854 7581 7.291567 GCATAATTCCACTCTTATAGCGTTTC 58.708 38.462 0.00 0.00 0.00 2.78
4855 7582 6.073765 CGCATAATTCCACTCTTATAGCGTTT 60.074 38.462 0.00 0.00 34.27 3.60
4856 7583 5.405571 CGCATAATTCCACTCTTATAGCGTT 59.594 40.000 0.00 0.00 34.27 4.84
4858 7585 5.061064 GTCGCATAATTCCACTCTTATAGCG 59.939 44.000 0.00 0.00 36.86 4.26
4859 7586 5.926542 TGTCGCATAATTCCACTCTTATAGC 59.073 40.000 0.00 0.00 0.00 2.97
4860 7587 9.295214 CTATGTCGCATAATTCCACTCTTATAG 57.705 37.037 2.09 0.00 0.00 1.31
4862 7589 7.815068 GTCTATGTCGCATAATTCCACTCTTAT 59.185 37.037 2.09 0.00 0.00 1.73
4863 7590 7.145985 GTCTATGTCGCATAATTCCACTCTTA 58.854 38.462 2.09 0.00 0.00 2.10
4864 7591 5.986135 GTCTATGTCGCATAATTCCACTCTT 59.014 40.000 2.09 0.00 0.00 2.85
4866 7593 4.383052 CGTCTATGTCGCATAATTCCACTC 59.617 45.833 2.09 0.00 0.00 3.51
4867 7594 4.037565 TCGTCTATGTCGCATAATTCCACT 59.962 41.667 2.09 0.00 0.00 4.00
4868 7595 4.295870 TCGTCTATGTCGCATAATTCCAC 58.704 43.478 2.09 0.00 0.00 4.02
4869 7596 4.577834 TCGTCTATGTCGCATAATTCCA 57.422 40.909 2.09 0.00 0.00 3.53
4870 7597 4.143305 GCTTCGTCTATGTCGCATAATTCC 60.143 45.833 2.09 0.00 0.00 3.01
4872 7599 3.425525 CGCTTCGTCTATGTCGCATAATT 59.574 43.478 2.09 0.00 0.00 1.40
4873 7600 2.980476 CGCTTCGTCTATGTCGCATAAT 59.020 45.455 2.09 0.00 0.00 1.28
4874 7601 2.381589 CGCTTCGTCTATGTCGCATAA 58.618 47.619 2.09 0.00 0.00 1.90
4875 7602 1.924629 GCGCTTCGTCTATGTCGCATA 60.925 52.381 0.00 0.73 41.84 3.14
4877 7604 1.872234 GCGCTTCGTCTATGTCGCA 60.872 57.895 0.00 0.00 41.84 5.10
4878 7605 0.316772 TAGCGCTTCGTCTATGTCGC 60.317 55.000 18.68 0.00 42.46 5.19
4879 7606 2.317679 ATAGCGCTTCGTCTATGTCG 57.682 50.000 18.68 0.00 30.10 4.35
4880 7607 5.032100 TCTTATAGCGCTTCGTCTATGTC 57.968 43.478 18.68 0.00 32.21 3.06
4881 7608 4.614078 GCTCTTATAGCGCTTCGTCTATGT 60.614 45.833 18.68 0.00 42.53 2.29
4896 7623 6.694877 ATATCGCATAGTTCCGCTCTTATA 57.305 37.500 0.00 0.00 0.00 0.98
4897 7624 3.944055 ATCGCATAGTTCCGCTCTTAT 57.056 42.857 0.00 0.00 0.00 1.73
4899 7626 3.944055 ATATCGCATAGTTCCGCTCTT 57.056 42.857 0.00 0.00 0.00 2.85
4900 7627 3.756963 TGTATATCGCATAGTTCCGCTCT 59.243 43.478 0.00 0.00 0.00 4.09
4901 7628 3.852536 GTGTATATCGCATAGTTCCGCTC 59.147 47.826 0.00 0.00 0.00 5.03
4902 7629 3.254903 TGTGTATATCGCATAGTTCCGCT 59.745 43.478 0.00 0.00 0.00 5.52
4916 7901 9.567776 TTGGTTCGGAAATATGATTGTGTATAT 57.432 29.630 0.00 0.00 0.00 0.86
4947 7932 0.802494 CGGAATTGCACGCTAAGGTT 59.198 50.000 0.00 0.00 0.00 3.50
4948 7933 2.466867 CGGAATTGCACGCTAAGGT 58.533 52.632 0.00 0.00 0.00 3.50
4955 7940 2.331893 TTCCTGGCGGAATTGCACG 61.332 57.895 6.70 0.00 44.28 5.34
4956 7941 3.680156 TTCCTGGCGGAATTGCAC 58.320 55.556 6.70 0.00 44.28 4.57
4966 7951 2.435938 TTCGGTCGCATTCCTGGC 60.436 61.111 0.00 0.00 0.00 4.85
4967 7952 2.452813 CGTTCGGTCGCATTCCTGG 61.453 63.158 0.00 0.00 0.00 4.45
4968 7953 3.081133 CGTTCGGTCGCATTCCTG 58.919 61.111 0.00 0.00 0.00 3.86
4991 7976 4.397832 TTTACGGCCCCGCTGGTC 62.398 66.667 6.63 0.00 44.19 4.02
4992 7977 4.710167 GTTTACGGCCCCGCTGGT 62.710 66.667 6.63 0.00 44.19 4.00
4994 7979 3.987954 ATGGTTTACGGCCCCGCTG 62.988 63.158 6.63 0.00 44.19 5.18
4995 7980 1.912826 TAATGGTTTACGGCCCCGCT 61.913 55.000 6.63 0.00 44.19 5.52
4996 7981 0.820482 ATAATGGTTTACGGCCCCGC 60.820 55.000 6.63 0.00 44.19 6.13
4997 7982 1.232119 GATAATGGTTTACGGCCCCG 58.768 55.000 4.96 4.96 46.03 5.73
4998 7983 1.951602 GTGATAATGGTTTACGGCCCC 59.048 52.381 0.00 0.00 0.00 5.80
4999 7984 1.951602 GGTGATAATGGTTTACGGCCC 59.048 52.381 0.00 0.00 0.00 5.80
5000 7985 2.876550 GAGGTGATAATGGTTTACGGCC 59.123 50.000 0.00 0.00 0.00 6.13
5001 7986 3.311596 GTGAGGTGATAATGGTTTACGGC 59.688 47.826 0.00 0.00 0.00 5.68
5002 7987 4.509616 TGTGAGGTGATAATGGTTTACGG 58.490 43.478 0.00 0.00 0.00 4.02
5003 7988 5.584649 ACATGTGAGGTGATAATGGTTTACG 59.415 40.000 0.00 0.00 0.00 3.18
5004 7989 6.597672 TCACATGTGAGGTGATAATGGTTTAC 59.402 38.462 24.56 0.00 40.16 2.01
5005 7990 6.716284 TCACATGTGAGGTGATAATGGTTTA 58.284 36.000 24.56 0.00 40.16 2.01
5006 7991 5.569355 TCACATGTGAGGTGATAATGGTTT 58.431 37.500 24.56 0.00 40.16 3.27
5007 7992 5.178096 TCACATGTGAGGTGATAATGGTT 57.822 39.130 24.56 0.00 40.16 3.67
5008 7993 4.842531 TCACATGTGAGGTGATAATGGT 57.157 40.909 24.56 0.00 40.16 3.55
5020 8005 3.924073 CGTCGATTAAACCTCACATGTGA 59.076 43.478 26.33 26.33 38.06 3.58
5021 8006 3.062099 CCGTCGATTAAACCTCACATGTG 59.938 47.826 20.18 20.18 0.00 3.21
5022 8007 3.259064 CCGTCGATTAAACCTCACATGT 58.741 45.455 0.00 0.00 0.00 3.21
5023 8008 3.259064 ACCGTCGATTAAACCTCACATG 58.741 45.455 0.00 0.00 0.00 3.21
5024 8009 3.056393 TGACCGTCGATTAAACCTCACAT 60.056 43.478 0.00 0.00 0.00 3.21
5025 8010 2.296752 TGACCGTCGATTAAACCTCACA 59.703 45.455 0.00 0.00 0.00 3.58
5026 8011 2.921754 CTGACCGTCGATTAAACCTCAC 59.078 50.000 0.00 0.00 0.00 3.51
5027 8012 2.559668 ACTGACCGTCGATTAAACCTCA 59.440 45.455 0.00 0.00 0.00 3.86
5028 8013 3.227810 ACTGACCGTCGATTAAACCTC 57.772 47.619 0.00 0.00 0.00 3.85
5029 8014 3.672767 AACTGACCGTCGATTAAACCT 57.327 42.857 0.00 0.00 0.00 3.50
5030 8015 3.305361 GCTAACTGACCGTCGATTAAACC 59.695 47.826 0.00 0.00 0.00 3.27
5031 8016 3.001365 CGCTAACTGACCGTCGATTAAAC 60.001 47.826 0.00 0.00 0.00 2.01
5032 8017 3.119884 TCGCTAACTGACCGTCGATTAAA 60.120 43.478 0.00 0.00 0.00 1.52
5033 8018 2.419673 TCGCTAACTGACCGTCGATTAA 59.580 45.455 0.00 0.00 0.00 1.40
5034 8019 2.009051 TCGCTAACTGACCGTCGATTA 58.991 47.619 0.00 0.00 0.00 1.75
5035 8020 0.806868 TCGCTAACTGACCGTCGATT 59.193 50.000 0.00 0.00 0.00 3.34
5036 8021 0.098376 GTCGCTAACTGACCGTCGAT 59.902 55.000 0.00 0.00 0.00 3.59
5037 8022 1.229975 TGTCGCTAACTGACCGTCGA 61.230 55.000 0.00 0.00 35.46 4.20
5038 8023 0.179171 ATGTCGCTAACTGACCGTCG 60.179 55.000 0.00 0.00 35.46 5.12
5039 8024 1.269166 CATGTCGCTAACTGACCGTC 58.731 55.000 0.00 0.00 35.46 4.79
5040 8025 0.736325 GCATGTCGCTAACTGACCGT 60.736 55.000 0.00 0.00 37.77 4.83
5041 8026 1.999051 GCATGTCGCTAACTGACCG 59.001 57.895 0.00 0.00 37.77 4.79
5055 8040 1.674441 GTGGATGACATGGACAGCATG 59.326 52.381 11.27 0.00 46.00 4.06
5056 8041 1.744798 CGTGGATGACATGGACAGCAT 60.745 52.381 11.27 1.13 32.27 3.79
5057 8042 0.391528 CGTGGATGACATGGACAGCA 60.392 55.000 11.27 0.00 32.27 4.41
5058 8043 0.108186 TCGTGGATGACATGGACAGC 60.108 55.000 0.00 0.00 36.71 4.40
5059 8044 2.159057 TCATCGTGGATGACATGGACAG 60.159 50.000 4.27 0.00 43.11 3.51
5060 8045 1.830477 TCATCGTGGATGACATGGACA 59.170 47.619 4.27 0.00 43.11 4.02
5061 8046 2.602257 TCATCGTGGATGACATGGAC 57.398 50.000 4.27 0.00 43.11 4.02
5062 8047 2.738321 CGTTCATCGTGGATGACATGGA 60.738 50.000 7.76 0.00 46.87 3.41
5063 8048 1.594397 CGTTCATCGTGGATGACATGG 59.406 52.381 7.76 0.00 46.87 3.66
5064 8049 2.537214 CTCGTTCATCGTGGATGACATG 59.463 50.000 7.76 0.00 46.87 3.21
5065 8050 2.166459 ACTCGTTCATCGTGGATGACAT 59.834 45.455 7.76 0.00 46.87 3.06
5066 8051 1.544246 ACTCGTTCATCGTGGATGACA 59.456 47.619 7.76 0.00 46.87 3.58
5067 8052 2.186076 GACTCGTTCATCGTGGATGAC 58.814 52.381 7.76 3.73 46.87 3.06
5068 8053 1.134367 GGACTCGTTCATCGTGGATGA 59.866 52.381 4.27 4.27 45.78 2.92
5069 8054 1.135139 AGGACTCGTTCATCGTGGATG 59.865 52.381 0.00 0.00 41.00 3.51
5070 8055 1.405821 GAGGACTCGTTCATCGTGGAT 59.594 52.381 0.00 0.00 40.80 3.41
5071 8056 0.809385 GAGGACTCGTTCATCGTGGA 59.191 55.000 0.00 0.00 40.80 4.02
5072 8057 0.179134 GGAGGACTCGTTCATCGTGG 60.179 60.000 0.00 0.00 35.76 4.94
5073 8058 0.811915 AGGAGGACTCGTTCATCGTG 59.188 55.000 0.00 0.00 35.76 4.35
5074 8059 1.202582 CAAGGAGGACTCGTTCATCGT 59.797 52.381 4.44 0.00 35.76 3.73
5075 8060 1.472878 TCAAGGAGGACTCGTTCATCG 59.527 52.381 4.44 0.00 35.76 3.84
5076 8061 2.417515 GGTCAAGGAGGACTCGTTCATC 60.418 54.545 4.44 0.00 35.75 2.92
5077 8062 1.550976 GGTCAAGGAGGACTCGTTCAT 59.449 52.381 4.44 0.00 35.75 2.57
5078 8063 0.966920 GGTCAAGGAGGACTCGTTCA 59.033 55.000 4.44 0.00 35.75 3.18
5079 8064 0.109226 CGGTCAAGGAGGACTCGTTC 60.109 60.000 4.44 0.00 35.75 3.95
5080 8065 1.965219 CGGTCAAGGAGGACTCGTT 59.035 57.895 1.71 1.71 38.10 3.85
5081 8066 2.637383 GCGGTCAAGGAGGACTCGT 61.637 63.158 0.00 0.00 37.91 4.18
5082 8067 2.154798 TTGCGGTCAAGGAGGACTCG 62.155 60.000 0.00 0.00 37.91 4.18
5083 8068 0.390472 CTTGCGGTCAAGGAGGACTC 60.390 60.000 4.81 0.00 44.53 3.36
5084 8069 1.674057 CTTGCGGTCAAGGAGGACT 59.326 57.895 4.81 0.00 44.53 3.85
5085 8070 4.285851 CTTGCGGTCAAGGAGGAC 57.714 61.111 4.81 0.00 44.53 3.85
5092 8077 1.448985 GGTATTCTGCTTGCGGTCAA 58.551 50.000 1.11 0.00 0.00 3.18
5093 8078 0.739462 CGGTATTCTGCTTGCGGTCA 60.739 55.000 1.11 0.00 0.00 4.02
5094 8079 2.006772 CGGTATTCTGCTTGCGGTC 58.993 57.895 1.11 0.00 0.00 4.79
5095 8080 4.201951 CGGTATTCTGCTTGCGGT 57.798 55.556 1.11 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.