Multiple sequence alignment - TraesCS2D01G436200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G436200 chr2D 100.000 2981 0 0 1 2981 546930974 546933954 0.000000e+00 5505
1 TraesCS2D01G436200 chr2D 86.150 1509 128 44 818 2270 546871986 546873469 0.000000e+00 1554
2 TraesCS2D01G436200 chr2D 89.258 782 79 5 1142 1922 555133404 555134181 0.000000e+00 974
3 TraesCS2D01G436200 chr2D 87.841 477 58 0 1446 1922 547251527 547252003 7.220000e-156 560
4 TraesCS2D01G436200 chr2A 94.028 1909 63 18 155 2044 689632319 689630443 0.000000e+00 2846
5 TraesCS2D01G436200 chr2A 88.263 1278 118 22 944 2203 690409622 690410885 0.000000e+00 1500
6 TraesCS2D01G436200 chr2A 88.379 1265 107 27 948 2187 689710593 689709344 0.000000e+00 1485
7 TraesCS2D01G436200 chr2A 90.496 242 23 0 992 1233 690534377 690534618 1.330000e-83 320
8 TraesCS2D01G436200 chr2A 85.765 281 16 4 155 435 690527148 690527404 2.930000e-70 276
9 TraesCS2D01G436200 chr2A 86.364 242 12 7 620 854 690534052 690534279 8.250000e-61 244
10 TraesCS2D01G436200 chr2B 91.092 1841 75 26 367 2168 653618694 653620484 0.000000e+00 2409
11 TraesCS2D01G436200 chr2B 91.659 1091 72 14 964 2050 653610661 653611736 0.000000e+00 1493
12 TraesCS2D01G436200 chr2B 91.130 575 40 8 2255 2820 653626655 653627227 0.000000e+00 769
13 TraesCS2D01G436200 chr2B 83.902 205 13 11 320 515 653615605 653615798 8.490000e-41 178
14 TraesCS2D01G436200 chr2B 97.590 83 2 0 2181 2263 653621789 653621871 3.100000e-30 143
15 TraesCS2D01G436200 chr4A 86.823 1108 106 21 949 2050 33079332 33080405 0.000000e+00 1201
16 TraesCS2D01G436200 chr6D 96.988 166 3 2 2818 2981 167191887 167192052 8.140000e-71 278
17 TraesCS2D01G436200 chr6D 96.914 162 4 1 2821 2981 318204284 318204445 1.360000e-68 270
18 TraesCS2D01G436200 chr3D 96.933 163 4 1 2820 2981 129474996 129475158 3.790000e-69 272
19 TraesCS2D01G436200 chr3D 95.858 169 5 2 2815 2981 222449044 222448876 3.790000e-69 272
20 TraesCS2D01G436200 chr3D 96.341 164 5 1 2819 2981 103326106 103325943 4.900000e-68 268
21 TraesCS2D01G436200 chr6A 96.914 162 4 1 2821 2981 209081910 209081749 1.360000e-68 270
22 TraesCS2D01G436200 chr4D 96.914 162 4 1 2821 2981 434844920 434845081 1.360000e-68 270
23 TraesCS2D01G436200 chr1D 95.808 167 5 2 2817 2981 79305740 79305574 4.900000e-68 268
24 TraesCS2D01G436200 chr7D 95.783 166 5 2 2816 2979 168165877 168165712 1.760000e-67 267
25 TraesCS2D01G436200 chr7D 81.667 120 21 1 2688 2806 75079459 75079340 6.800000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G436200 chr2D 546930974 546933954 2980 False 5505.00 5505 100.00000 1 2981 1 chr2D.!!$F2 2980
1 TraesCS2D01G436200 chr2D 546871986 546873469 1483 False 1554.00 1554 86.15000 818 2270 1 chr2D.!!$F1 1452
2 TraesCS2D01G436200 chr2D 555133404 555134181 777 False 974.00 974 89.25800 1142 1922 1 chr2D.!!$F4 780
3 TraesCS2D01G436200 chr2A 689630443 689632319 1876 True 2846.00 2846 94.02800 155 2044 1 chr2A.!!$R1 1889
4 TraesCS2D01G436200 chr2A 690409622 690410885 1263 False 1500.00 1500 88.26300 944 2203 1 chr2A.!!$F1 1259
5 TraesCS2D01G436200 chr2A 689709344 689710593 1249 True 1485.00 1485 88.37900 948 2187 1 chr2A.!!$R2 1239
6 TraesCS2D01G436200 chr2A 690534052 690534618 566 False 282.00 320 88.43000 620 1233 2 chr2A.!!$F3 613
7 TraesCS2D01G436200 chr2B 653610661 653621871 11210 False 1055.75 2409 91.06075 320 2263 4 chr2B.!!$F2 1943
8 TraesCS2D01G436200 chr2B 653626655 653627227 572 False 769.00 769 91.13000 2255 2820 1 chr2B.!!$F1 565
9 TraesCS2D01G436200 chr4A 33079332 33080405 1073 False 1201.00 1201 86.82300 949 2050 1 chr4A.!!$F1 1101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 315 0.028902 GCAAACGTTCAACTCGCCTT 59.971 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 9929 2.50392 AGCAATACCGGCTTACGTAG 57.496 50.0 0.0 0.0 38.81 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.536161 ACTGGCTTTTCTTTTCTCATTAGCA 59.464 36.000 0.00 0.00 0.00 3.49
27 28 6.040842 ACTGGCTTTTCTTTTCTCATTAGCAA 59.959 34.615 0.00 0.00 0.00 3.91
28 29 6.815089 TGGCTTTTCTTTTCTCATTAGCAAA 58.185 32.000 0.00 0.00 0.00 3.68
29 30 7.444299 TGGCTTTTCTTTTCTCATTAGCAAAT 58.556 30.769 0.00 0.00 0.00 2.32
30 31 7.933033 TGGCTTTTCTTTTCTCATTAGCAAATT 59.067 29.630 0.00 0.00 0.00 1.82
31 32 8.777413 GGCTTTTCTTTTCTCATTAGCAAATTT 58.223 29.630 0.00 0.00 0.00 1.82
32 33 9.590088 GCTTTTCTTTTCTCATTAGCAAATTTG 57.410 29.630 14.03 14.03 0.00 2.32
45 46 7.695480 TTAGCAAATTTGTACATCTAGCCAA 57.305 32.000 19.03 0.00 0.00 4.52
46 47 6.780457 AGCAAATTTGTACATCTAGCCAAT 57.220 33.333 19.03 0.00 0.00 3.16
47 48 6.567050 AGCAAATTTGTACATCTAGCCAATG 58.433 36.000 19.03 0.00 0.00 2.82
48 49 6.377996 AGCAAATTTGTACATCTAGCCAATGA 59.622 34.615 19.03 0.00 0.00 2.57
49 50 7.035004 GCAAATTTGTACATCTAGCCAATGAA 58.965 34.615 19.03 0.00 0.00 2.57
50 51 7.545265 GCAAATTTGTACATCTAGCCAATGAAA 59.455 33.333 19.03 0.00 0.00 2.69
57 58 9.502091 TGTACATCTAGCCAATGAAATATAACC 57.498 33.333 0.00 0.00 0.00 2.85
59 60 7.526041 ACATCTAGCCAATGAAATATAACCCA 58.474 34.615 0.00 0.00 0.00 4.51
61 62 9.685276 CATCTAGCCAATGAAATATAACCCATA 57.315 33.333 0.00 0.00 0.00 2.74
65 66 8.725606 AGCCAATGAAATATAACCCATAATGT 57.274 30.769 0.00 0.00 0.00 2.71
68 69 9.087871 CCAATGAAATATAACCCATAATGTCCA 57.912 33.333 0.00 0.00 0.00 4.02
76 77 9.881773 ATATAACCCATAATGTCCATTGTTCTT 57.118 29.630 2.80 0.00 32.50 2.52
78 79 9.707957 ATAACCCATAATGTCCATTGTTCTTAA 57.292 29.630 2.80 0.00 32.50 1.85
79 80 8.608185 AACCCATAATGTCCATTGTTCTTAAT 57.392 30.769 2.80 0.00 32.50 1.40
80 81 9.707957 AACCCATAATGTCCATTGTTCTTAATA 57.292 29.630 2.80 0.00 32.50 0.98
81 82 9.707957 ACCCATAATGTCCATTGTTCTTAATAA 57.292 29.630 2.80 0.00 32.50 1.40
108 109 9.825972 CAACAATAACAAGTGTATAAGTCAAGG 57.174 33.333 0.00 0.00 0.00 3.61
109 110 8.040716 ACAATAACAAGTGTATAAGTCAAGGC 57.959 34.615 0.00 0.00 0.00 4.35
110 111 7.120726 ACAATAACAAGTGTATAAGTCAAGGCC 59.879 37.037 0.00 0.00 0.00 5.19
111 112 4.634012 ACAAGTGTATAAGTCAAGGCCA 57.366 40.909 5.01 0.00 0.00 5.36
113 114 4.041691 ACAAGTGTATAAGTCAAGGCCACT 59.958 41.667 5.01 0.00 33.40 4.00
114 115 4.910458 AGTGTATAAGTCAAGGCCACTT 57.090 40.909 5.01 9.03 37.80 3.16
115 116 4.833390 AGTGTATAAGTCAAGGCCACTTC 58.167 43.478 10.06 0.00 35.63 3.01
116 117 3.939592 GTGTATAAGTCAAGGCCACTTCC 59.060 47.826 10.06 2.05 35.63 3.46
117 118 3.585289 TGTATAAGTCAAGGCCACTTCCA 59.415 43.478 10.06 4.32 35.63 3.53
118 119 2.561478 TAAGTCAAGGCCACTTCCAC 57.439 50.000 10.06 0.00 35.63 4.02
121 122 2.672996 CAAGGCCACTTCCACGGG 60.673 66.667 5.01 0.00 33.81 5.28
153 154 3.195698 GCGCCTTCACCCGCTAAG 61.196 66.667 0.00 0.00 46.14 2.18
183 184 8.993424 AGCTAAAGTTCTATTTTATCAGGGAGA 58.007 33.333 0.00 0.00 0.00 3.71
187 188 6.284459 AGTTCTATTTTATCAGGGAGAAGCG 58.716 40.000 0.00 0.00 0.00 4.68
227 228 3.860930 ATTTTCAGCCGGGCCGTGT 62.861 57.895 26.32 8.51 0.00 4.49
238 239 4.664677 GCCGTGTGGTCAGCGTCT 62.665 66.667 0.00 0.00 37.67 4.18
239 240 2.959372 CCGTGTGGTCAGCGTCTA 59.041 61.111 0.00 0.00 0.00 2.59
240 241 1.154016 CCGTGTGGTCAGCGTCTAG 60.154 63.158 0.00 0.00 0.00 2.43
241 242 1.583495 CCGTGTGGTCAGCGTCTAGA 61.583 60.000 0.00 0.00 0.00 2.43
242 243 0.179187 CGTGTGGTCAGCGTCTAGAG 60.179 60.000 0.00 0.00 0.00 2.43
244 245 1.131504 GTGTGGTCAGCGTCTAGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
246 247 1.668751 GTGGTCAGCGTCTAGAGAGAG 59.331 57.143 0.00 0.00 30.20 3.20
247 248 1.279558 TGGTCAGCGTCTAGAGAGAGT 59.720 52.381 0.00 0.00 30.20 3.24
248 249 1.937899 GGTCAGCGTCTAGAGAGAGTC 59.062 57.143 0.00 0.00 30.20 3.36
249 250 1.591158 GTCAGCGTCTAGAGAGAGTCG 59.409 57.143 0.00 0.00 30.20 4.18
250 251 1.477295 TCAGCGTCTAGAGAGAGTCGA 59.523 52.381 0.00 0.00 30.20 4.20
255 256 1.112950 TCTAGAGAGAGTCGAGCCGA 58.887 55.000 0.00 0.00 0.00 5.54
256 257 1.689813 TCTAGAGAGAGTCGAGCCGAT 59.310 52.381 0.67 0.00 38.42 4.18
258 259 0.817634 AGAGAGAGTCGAGCCGATGG 60.818 60.000 0.67 0.00 38.42 3.51
259 260 0.816018 GAGAGAGTCGAGCCGATGGA 60.816 60.000 0.67 0.00 38.42 3.41
261 262 0.671251 GAGAGTCGAGCCGATGGAAT 59.329 55.000 0.67 0.00 38.42 3.01
264 265 1.067821 GAGTCGAGCCGATGGAATCTT 59.932 52.381 0.67 0.00 42.58 2.40
265 266 1.482593 AGTCGAGCCGATGGAATCTTT 59.517 47.619 0.67 0.00 42.58 2.52
266 267 1.861575 GTCGAGCCGATGGAATCTTTC 59.138 52.381 0.67 0.00 42.58 2.62
267 268 1.480545 TCGAGCCGATGGAATCTTTCA 59.519 47.619 0.00 0.00 42.58 2.69
268 269 2.103094 TCGAGCCGATGGAATCTTTCAT 59.897 45.455 0.00 0.00 42.58 2.57
271 272 2.173356 AGCCGATGGAATCTTTCATGGA 59.827 45.455 0.00 0.00 42.58 3.41
274 275 4.761739 GCCGATGGAATCTTTCATGGAATA 59.238 41.667 0.00 0.00 42.58 1.75
275 276 5.416952 GCCGATGGAATCTTTCATGGAATAT 59.583 40.000 0.00 0.00 42.58 1.28
277 278 7.284034 GCCGATGGAATCTTTCATGGAATATAT 59.716 37.037 0.00 0.00 42.58 0.86
280 281 9.917887 GATGGAATCTTTCATGGAATATATCCT 57.082 33.333 11.29 2.84 44.19 3.24
293 294 7.876896 GGAATATATCCTCGTGAAAGAAGAC 57.123 40.000 0.00 0.00 45.56 3.01
294 295 6.583050 GGAATATATCCTCGTGAAAGAAGACG 59.417 42.308 0.00 0.00 45.56 4.18
296 297 0.038526 TCCTCGTGAAAGAAGACGGC 60.039 55.000 0.00 0.00 36.23 5.68
298 299 1.497991 CTCGTGAAAGAAGACGGCAA 58.502 50.000 0.00 0.00 36.23 4.52
299 300 1.864711 CTCGTGAAAGAAGACGGCAAA 59.135 47.619 0.00 0.00 36.23 3.68
300 301 1.595794 TCGTGAAAGAAGACGGCAAAC 59.404 47.619 0.00 0.00 36.23 2.93
311 312 1.721133 CGGCAAACGTTCAACTCGC 60.721 57.895 0.00 0.00 37.93 5.03
312 313 1.370051 GGCAAACGTTCAACTCGCC 60.370 57.895 0.00 3.71 0.00 5.54
313 314 1.647084 GCAAACGTTCAACTCGCCT 59.353 52.632 0.00 0.00 0.00 5.52
314 315 0.028902 GCAAACGTTCAACTCGCCTT 59.971 50.000 0.00 0.00 0.00 4.35
315 316 1.262151 GCAAACGTTCAACTCGCCTTA 59.738 47.619 0.00 0.00 0.00 2.69
316 317 2.899977 CAAACGTTCAACTCGCCTTAC 58.100 47.619 0.00 0.00 0.00 2.34
317 318 1.505425 AACGTTCAACTCGCCTTACC 58.495 50.000 0.00 0.00 0.00 2.85
322 323 0.320073 TCAACTCGCCTTACCGGTTG 60.320 55.000 15.04 6.33 39.00 3.77
323 324 0.320073 CAACTCGCCTTACCGGTTGA 60.320 55.000 15.04 0.23 39.49 3.18
362 6791 2.173020 TATGCATGCACGGCAGTCG 61.173 57.895 25.37 0.00 45.68 4.18
365 6794 2.125713 CATGCACGGCAGTCGGTA 60.126 61.111 0.00 0.00 43.65 4.02
526 8211 4.395583 GGCGAGTCCGACGACGTT 62.396 66.667 17.42 0.00 44.28 3.99
527 8212 2.868787 GCGAGTCCGACGACGTTC 60.869 66.667 17.42 0.00 44.28 3.95
528 8213 2.202272 CGAGTCCGACGACGTTCC 60.202 66.667 0.13 0.00 44.28 3.62
529 8214 2.675056 CGAGTCCGACGACGTTCCT 61.675 63.158 0.13 0.00 44.28 3.36
556 8241 1.561250 CGTTCGTGTTGGTCCGTTC 59.439 57.895 0.00 0.00 0.00 3.95
558 8243 0.580104 GTTCGTGTTGGTCCGTTCAG 59.420 55.000 0.00 0.00 0.00 3.02
577 8266 7.760340 CCGTTCAGAAAAACTTATCTAGCTAGT 59.240 37.037 20.10 10.32 0.00 2.57
583 8272 8.817876 AGAAAAACTTATCTAGCTAGTCAACCT 58.182 33.333 20.10 0.52 0.00 3.50
613 8303 1.610363 TGCACGGCAAGGAATTGTTA 58.390 45.000 0.00 0.00 34.76 2.41
673 8369 1.002033 CTGCACTGTCCAAGAAGCAAC 60.002 52.381 0.00 0.00 39.01 4.17
704 8401 2.681152 AAAATTGGAACGTCGCAGTC 57.319 45.000 0.00 0.00 0.00 3.51
705 8402 0.511221 AAATTGGAACGTCGCAGTCG 59.489 50.000 0.00 0.00 45.83 4.18
706 8403 1.897398 AATTGGAACGTCGCAGTCGC 61.897 55.000 0.00 0.00 43.91 5.19
707 8404 3.776659 TTGGAACGTCGCAGTCGCA 62.777 57.895 0.00 0.00 43.91 5.10
708 8405 3.470567 GGAACGTCGCAGTCGCAG 61.471 66.667 0.00 0.00 43.91 5.18
709 8406 4.122515 GAACGTCGCAGTCGCAGC 62.123 66.667 0.00 0.00 43.91 5.25
710 8407 4.942481 AACGTCGCAGTCGCAGCA 62.942 61.111 0.00 0.00 43.91 4.41
978 8708 4.809958 TCGATCGGTTTAGTTGTTCAACAA 59.190 37.500 16.41 0.00 35.42 2.83
979 8709 5.467399 TCGATCGGTTTAGTTGTTCAACAAT 59.533 36.000 16.41 0.00 40.59 2.71
985 8715 6.196353 CGGTTTAGTTGTTCAACAATCAACAG 59.804 38.462 6.17 7.00 40.59 3.16
989 8719 4.081752 AGTTGTTCAACAATCAACAGCCAA 60.082 37.500 6.17 0.00 40.59 4.52
990 8720 3.779759 TGTTCAACAATCAACAGCCAAC 58.220 40.909 0.00 0.00 0.00 3.77
1236 8966 0.978146 AGAAGCCCGTGGTGAGCTAT 60.978 55.000 0.00 0.00 35.30 2.97
1354 9084 1.227556 GACGTGACCAAGCACCACT 60.228 57.895 0.00 0.00 35.37 4.00
1355 9085 0.814010 GACGTGACCAAGCACCACTT 60.814 55.000 0.00 0.00 40.05 3.16
1392 9122 0.105408 ACAAGGTGGCGTACTTCGTT 59.895 50.000 0.00 0.00 42.13 3.85
1395 9125 0.319297 AGGTGGCGTACTTCGTTGTC 60.319 55.000 0.00 0.00 42.13 3.18
1398 9128 1.081242 GGCGTACTTCGTTGTCCGA 60.081 57.895 0.00 0.00 45.66 4.55
1581 9311 2.348888 GGAGGAGGCCGAGAACGAA 61.349 63.158 0.00 0.00 42.66 3.85
2077 9870 3.038417 GCGCGTGCAGTCTGTTCT 61.038 61.111 17.66 0.00 42.15 3.01
2091 9884 4.745125 AGTCTGTTCTGTGTAAACGATGTG 59.255 41.667 0.00 0.00 0.00 3.21
2134 9929 6.205853 TGTCACTTTGTACCCAAACATATGTC 59.794 38.462 9.23 0.00 35.67 3.06
2306 11394 2.501610 CACCTTCCTCTAGCCGCC 59.498 66.667 0.00 0.00 0.00 6.13
2393 11481 0.539051 CCTTCGAGCTCCACCTTCAT 59.461 55.000 8.47 0.00 0.00 2.57
2398 11486 0.747283 GAGCTCCACCTTCATGCCAG 60.747 60.000 0.87 0.00 0.00 4.85
2436 11524 3.616721 ACGTGCGCCAACTCCTCT 61.617 61.111 4.18 0.00 0.00 3.69
2440 11529 3.435186 GCGCCAACTCCTCTTGCC 61.435 66.667 0.00 0.00 0.00 4.52
2448 11537 3.388308 CAACTCCTCTTGCCATCTATCG 58.612 50.000 0.00 0.00 0.00 2.92
2449 11538 1.967066 ACTCCTCTTGCCATCTATCGG 59.033 52.381 0.00 0.00 0.00 4.18
2466 11555 2.035442 GGCGAAGTTGTGGGCTCTC 61.035 63.158 0.00 0.00 0.00 3.20
2475 11564 2.285668 TGGGCTCTCTCCCCCTTG 60.286 66.667 0.00 0.00 45.97 3.61
2476 11565 2.041265 GGGCTCTCTCCCCCTTGA 59.959 66.667 0.00 0.00 40.51 3.02
2477 11566 1.385206 GGGCTCTCTCCCCCTTGAT 60.385 63.158 0.00 0.00 40.51 2.57
2478 11567 1.414866 GGGCTCTCTCCCCCTTGATC 61.415 65.000 0.00 0.00 40.51 2.92
2479 11568 0.692419 GGCTCTCTCCCCCTTGATCA 60.692 60.000 0.00 0.00 0.00 2.92
2480 11569 0.467804 GCTCTCTCCCCCTTGATCAC 59.532 60.000 0.00 0.00 0.00 3.06
2482 11571 0.687757 TCTCTCCCCCTTGATCACCG 60.688 60.000 0.00 0.00 0.00 4.94
2483 11572 2.190578 CTCCCCCTTGATCACCGC 59.809 66.667 0.00 0.00 0.00 5.68
2484 11573 3.406595 CTCCCCCTTGATCACCGCC 62.407 68.421 0.00 0.00 0.00 6.13
2485 11574 4.506255 CCCCCTTGATCACCGCCC 62.506 72.222 0.00 0.00 0.00 6.13
2486 11575 3.727258 CCCCTTGATCACCGCCCA 61.727 66.667 0.00 0.00 0.00 5.36
2487 11576 2.124570 CCCTTGATCACCGCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
2513 11602 1.591768 GAATAGGTGGAGGAACCCCA 58.408 55.000 0.00 0.00 41.54 4.96
2529 11619 0.111253 CCCACTCTCTGCCTTGGTTT 59.889 55.000 0.00 0.00 0.00 3.27
2559 11649 4.711399 AGTTAGGTTTAGTGTGTTCCACC 58.289 43.478 0.00 0.00 45.74 4.61
2575 11665 3.508840 CCGGAGCGTTTGGATGGC 61.509 66.667 0.00 0.00 0.00 4.40
2591 11681 3.056465 GGATGGCGGTGTTTGGAATAAAA 60.056 43.478 0.00 0.00 0.00 1.52
2596 11686 5.467063 TGGCGGTGTTTGGAATAAAATTTTC 59.533 36.000 6.72 0.00 0.00 2.29
2602 11692 9.508642 GGTGTTTGGAATAAAATTTTCCCAATA 57.491 29.630 22.23 15.79 41.68 1.90
2645 11736 1.471676 GCGATGGTGAACTCGAAGGAT 60.472 52.381 0.00 0.00 37.05 3.24
2740 11836 4.318071 CGCATATTGTGACGTCTTTGTTTG 59.682 41.667 17.92 9.07 0.00 2.93
2781 11877 0.038744 ACAAGGTTGGAGGCTCATGG 59.961 55.000 17.69 0.70 0.00 3.66
2809 11905 1.571955 TCTAGCATCCTGCCTCAACA 58.428 50.000 0.00 0.00 46.52 3.33
2820 11916 1.271325 TGCCTCAACAACATCGATGGT 60.271 47.619 28.09 20.88 0.00 3.55
2831 11927 4.527509 ACATCGATGGTGATACATCTCC 57.472 45.455 28.09 3.80 43.92 3.71
2839 11935 5.196341 TGGTGATACATCTCCAACGTATC 57.804 43.478 9.93 0.00 44.70 2.24
2840 11936 4.893524 TGGTGATACATCTCCAACGTATCT 59.106 41.667 9.93 0.00 44.70 1.98
2841 11937 6.066032 TGGTGATACATCTCCAACGTATCTA 58.934 40.000 9.93 0.00 44.70 1.98
2842 11938 6.016527 TGGTGATACATCTCCAACGTATCTAC 60.017 42.308 9.93 6.58 44.70 2.59
2843 11939 6.207025 GGTGATACATCTCCAACGTATCTACT 59.793 42.308 9.46 0.00 41.27 2.57
2844 11940 7.255520 GGTGATACATCTCCAACGTATCTACTT 60.256 40.741 9.46 0.00 41.27 2.24
2845 11941 8.136165 GTGATACATCTCCAACGTATCTACTTT 58.864 37.037 9.46 0.00 41.27 2.66
2846 11942 8.692710 TGATACATCTCCAACGTATCTACTTTT 58.307 33.333 9.46 0.00 41.27 2.27
2847 11943 9.530633 GATACATCTCCAACGTATCTACTTTTT 57.469 33.333 0.00 0.00 38.84 1.94
2848 11944 7.829378 ACATCTCCAACGTATCTACTTTTTC 57.171 36.000 0.00 0.00 0.00 2.29
2849 11945 7.612677 ACATCTCCAACGTATCTACTTTTTCT 58.387 34.615 0.00 0.00 0.00 2.52
2850 11946 8.746530 ACATCTCCAACGTATCTACTTTTTCTA 58.253 33.333 0.00 0.00 0.00 2.10
2851 11947 9.582431 CATCTCCAACGTATCTACTTTTTCTAA 57.418 33.333 0.00 0.00 0.00 2.10
2852 11948 8.976986 TCTCCAACGTATCTACTTTTTCTAAC 57.023 34.615 0.00 0.00 0.00 2.34
2853 11949 7.752239 TCTCCAACGTATCTACTTTTTCTAACG 59.248 37.037 0.00 0.00 35.38 3.18
2854 11950 6.308766 TCCAACGTATCTACTTTTTCTAACGC 59.691 38.462 0.00 0.00 32.65 4.84
2855 11951 6.309737 CCAACGTATCTACTTTTTCTAACGCT 59.690 38.462 0.00 0.00 32.65 5.07
2856 11952 7.148689 CCAACGTATCTACTTTTTCTAACGCTT 60.149 37.037 0.00 0.00 32.65 4.68
2857 11953 7.880059 ACGTATCTACTTTTTCTAACGCTTT 57.120 32.000 0.00 0.00 32.65 3.51
2858 11954 8.302965 ACGTATCTACTTTTTCTAACGCTTTT 57.697 30.769 0.00 0.00 32.65 2.27
2859 11955 8.430828 ACGTATCTACTTTTTCTAACGCTTTTC 58.569 33.333 0.00 0.00 32.65 2.29
2860 11956 7.896782 CGTATCTACTTTTTCTAACGCTTTTCC 59.103 37.037 0.00 0.00 0.00 3.13
2861 11957 7.981102 ATCTACTTTTTCTAACGCTTTTCCT 57.019 32.000 0.00 0.00 0.00 3.36
2862 11958 7.417496 TCTACTTTTTCTAACGCTTTTCCTC 57.583 36.000 0.00 0.00 0.00 3.71
2863 11959 7.215085 TCTACTTTTTCTAACGCTTTTCCTCT 58.785 34.615 0.00 0.00 0.00 3.69
2864 11960 6.694877 ACTTTTTCTAACGCTTTTCCTCTT 57.305 33.333 0.00 0.00 0.00 2.85
2865 11961 6.495706 ACTTTTTCTAACGCTTTTCCTCTTG 58.504 36.000 0.00 0.00 0.00 3.02
2866 11962 6.095021 ACTTTTTCTAACGCTTTTCCTCTTGT 59.905 34.615 0.00 0.00 0.00 3.16
2867 11963 6.445357 TTTTCTAACGCTTTTCCTCTTGTT 57.555 33.333 0.00 0.00 0.00 2.83
2868 11964 6.445357 TTTCTAACGCTTTTCCTCTTGTTT 57.555 33.333 0.00 0.00 0.00 2.83
2869 11965 6.445357 TTCTAACGCTTTTCCTCTTGTTTT 57.555 33.333 0.00 0.00 0.00 2.43
2870 11966 5.816919 TCTAACGCTTTTCCTCTTGTTTTG 58.183 37.500 0.00 0.00 0.00 2.44
2871 11967 3.436700 ACGCTTTTCCTCTTGTTTTGG 57.563 42.857 0.00 0.00 0.00 3.28
2872 11968 3.020984 ACGCTTTTCCTCTTGTTTTGGA 58.979 40.909 0.00 0.00 0.00 3.53
2873 11969 3.181490 ACGCTTTTCCTCTTGTTTTGGAC 60.181 43.478 0.00 0.00 0.00 4.02
2874 11970 3.066760 CGCTTTTCCTCTTGTTTTGGACT 59.933 43.478 0.00 0.00 0.00 3.85
2875 11971 4.611943 GCTTTTCCTCTTGTTTTGGACTC 58.388 43.478 0.00 0.00 0.00 3.36
2876 11972 4.339530 GCTTTTCCTCTTGTTTTGGACTCT 59.660 41.667 0.00 0.00 0.00 3.24
2877 11973 5.531287 GCTTTTCCTCTTGTTTTGGACTCTA 59.469 40.000 0.00 0.00 0.00 2.43
2878 11974 6.039382 GCTTTTCCTCTTGTTTTGGACTCTAA 59.961 38.462 0.00 0.00 0.00 2.10
2879 11975 7.255625 GCTTTTCCTCTTGTTTTGGACTCTAAT 60.256 37.037 0.00 0.00 0.00 1.73
2880 11976 8.533569 TTTTCCTCTTGTTTTGGACTCTAATT 57.466 30.769 0.00 0.00 0.00 1.40
2881 11977 8.533569 TTTCCTCTTGTTTTGGACTCTAATTT 57.466 30.769 0.00 0.00 0.00 1.82
2882 11978 7.510549 TCCTCTTGTTTTGGACTCTAATTTG 57.489 36.000 0.00 0.00 0.00 2.32
2883 11979 6.016276 TCCTCTTGTTTTGGACTCTAATTTGC 60.016 38.462 0.00 0.00 0.00 3.68
2884 11980 6.239008 CCTCTTGTTTTGGACTCTAATTTGCA 60.239 38.462 0.00 0.00 0.00 4.08
2885 11981 7.288810 TCTTGTTTTGGACTCTAATTTGCAT 57.711 32.000 0.00 0.00 0.00 3.96
2886 11982 7.147312 TCTTGTTTTGGACTCTAATTTGCATG 58.853 34.615 0.00 0.00 0.00 4.06
2887 11983 6.647334 TGTTTTGGACTCTAATTTGCATGA 57.353 33.333 0.00 0.00 0.00 3.07
2888 11984 7.230849 TGTTTTGGACTCTAATTTGCATGAT 57.769 32.000 0.00 0.00 0.00 2.45
2889 11985 7.669427 TGTTTTGGACTCTAATTTGCATGATT 58.331 30.769 0.00 0.00 0.00 2.57
2890 11986 8.149647 TGTTTTGGACTCTAATTTGCATGATTT 58.850 29.630 0.00 0.00 0.00 2.17
2891 11987 8.437742 GTTTTGGACTCTAATTTGCATGATTTG 58.562 33.333 0.00 0.00 0.00 2.32
2892 11988 7.465353 TTGGACTCTAATTTGCATGATTTGA 57.535 32.000 0.00 0.00 0.00 2.69
2893 11989 7.465353 TGGACTCTAATTTGCATGATTTGAA 57.535 32.000 0.00 0.00 0.00 2.69
2894 11990 8.070034 TGGACTCTAATTTGCATGATTTGAAT 57.930 30.769 0.00 0.00 0.00 2.57
2895 11991 9.187996 TGGACTCTAATTTGCATGATTTGAATA 57.812 29.630 0.00 0.00 0.00 1.75
2905 12001 8.770438 TTGCATGATTTGAATAAAACTAACCC 57.230 30.769 0.00 0.00 0.00 4.11
2906 12002 7.032580 TGCATGATTTGAATAAAACTAACCCG 58.967 34.615 0.00 0.00 0.00 5.28
2907 12003 6.475402 GCATGATTTGAATAAAACTAACCCGG 59.525 38.462 0.00 0.00 0.00 5.73
2908 12004 7.629652 GCATGATTTGAATAAAACTAACCCGGA 60.630 37.037 0.73 0.00 0.00 5.14
2909 12005 7.148355 TGATTTGAATAAAACTAACCCGGAC 57.852 36.000 0.73 0.00 0.00 4.79
2910 12006 6.943718 TGATTTGAATAAAACTAACCCGGACT 59.056 34.615 0.73 0.00 0.00 3.85
2911 12007 6.563222 TTTGAATAAAACTAACCCGGACTG 57.437 37.500 0.73 0.00 0.00 3.51
2912 12008 5.486735 TGAATAAAACTAACCCGGACTGA 57.513 39.130 0.73 0.00 0.00 3.41
2913 12009 6.057321 TGAATAAAACTAACCCGGACTGAT 57.943 37.500 0.73 0.00 0.00 2.90
2914 12010 5.878116 TGAATAAAACTAACCCGGACTGATG 59.122 40.000 0.73 0.00 0.00 3.07
2915 12011 2.109425 AAACTAACCCGGACTGATGC 57.891 50.000 0.73 0.00 0.00 3.91
2916 12012 1.276622 AACTAACCCGGACTGATGCT 58.723 50.000 0.73 0.00 0.00 3.79
2917 12013 0.537188 ACTAACCCGGACTGATGCTG 59.463 55.000 0.73 0.00 0.00 4.41
2918 12014 0.537188 CTAACCCGGACTGATGCTGT 59.463 55.000 0.73 0.00 0.00 4.40
2919 12015 0.981183 TAACCCGGACTGATGCTGTT 59.019 50.000 0.73 0.00 0.00 3.16
2920 12016 0.110486 AACCCGGACTGATGCTGTTT 59.890 50.000 0.73 0.00 0.00 2.83
2921 12017 0.110486 ACCCGGACTGATGCTGTTTT 59.890 50.000 0.73 0.00 0.00 2.43
2922 12018 0.804989 CCCGGACTGATGCTGTTTTC 59.195 55.000 0.73 0.00 0.00 2.29
2923 12019 1.522668 CCGGACTGATGCTGTTTTCA 58.477 50.000 0.00 0.00 0.00 2.69
2938 12034 5.437289 TGTTTTCAGCAGAACTAACATGG 57.563 39.130 5.32 0.00 32.41 3.66
2939 12035 4.887071 TGTTTTCAGCAGAACTAACATGGT 59.113 37.500 5.32 0.00 32.41 3.55
2940 12036 5.215160 GTTTTCAGCAGAACTAACATGGTG 58.785 41.667 0.00 0.00 42.34 4.17
2941 12037 3.769739 TCAGCAGAACTAACATGGTGT 57.230 42.857 0.00 0.00 41.82 4.16
2942 12038 4.085357 TCAGCAGAACTAACATGGTGTT 57.915 40.909 0.00 0.00 43.88 3.32
2943 12039 3.814842 TCAGCAGAACTAACATGGTGTTG 59.185 43.478 5.64 0.00 41.30 3.33
2944 12040 3.565482 CAGCAGAACTAACATGGTGTTGT 59.435 43.478 5.64 0.00 41.30 3.32
2945 12041 4.036734 CAGCAGAACTAACATGGTGTTGTT 59.963 41.667 5.64 7.65 41.30 2.83
2946 12042 4.644685 AGCAGAACTAACATGGTGTTGTTT 59.355 37.500 5.64 0.00 41.30 2.83
2947 12043 5.127031 AGCAGAACTAACATGGTGTTGTTTT 59.873 36.000 5.64 1.95 41.30 2.43
2948 12044 5.810074 GCAGAACTAACATGGTGTTGTTTTT 59.190 36.000 5.64 0.00 41.30 1.94
2949 12045 6.237808 GCAGAACTAACATGGTGTTGTTTTTG 60.238 38.462 5.64 10.20 41.30 2.44
2950 12046 6.811170 CAGAACTAACATGGTGTTGTTTTTGT 59.189 34.615 5.64 0.00 41.30 2.83
2951 12047 6.811170 AGAACTAACATGGTGTTGTTTTTGTG 59.189 34.615 5.64 0.00 41.30 3.33
2952 12048 4.867608 ACTAACATGGTGTTGTTTTTGTGC 59.132 37.500 5.64 0.00 41.30 4.57
2953 12049 3.325293 ACATGGTGTTGTTTTTGTGCA 57.675 38.095 0.00 0.00 0.00 4.57
2954 12050 3.260740 ACATGGTGTTGTTTTTGTGCAG 58.739 40.909 0.00 0.00 0.00 4.41
2955 12051 3.056250 ACATGGTGTTGTTTTTGTGCAGA 60.056 39.130 0.00 0.00 0.00 4.26
2956 12052 3.667497 TGGTGTTGTTTTTGTGCAGAA 57.333 38.095 0.00 0.00 0.00 3.02
2957 12053 3.995199 TGGTGTTGTTTTTGTGCAGAAA 58.005 36.364 4.66 4.66 0.00 2.52
2958 12054 4.573900 TGGTGTTGTTTTTGTGCAGAAAT 58.426 34.783 10.13 0.00 0.00 2.17
2959 12055 5.724328 TGGTGTTGTTTTTGTGCAGAAATA 58.276 33.333 10.13 2.40 0.00 1.40
2960 12056 6.166279 TGGTGTTGTTTTTGTGCAGAAATAA 58.834 32.000 10.13 5.07 0.00 1.40
2961 12057 6.650807 TGGTGTTGTTTTTGTGCAGAAATAAA 59.349 30.769 10.13 0.00 0.00 1.40
2962 12058 7.173218 TGGTGTTGTTTTTGTGCAGAAATAAAA 59.827 29.630 10.13 4.13 0.00 1.52
2963 12059 7.691877 GGTGTTGTTTTTGTGCAGAAATAAAAG 59.308 33.333 10.13 0.00 0.00 2.27
2964 12060 8.227119 GTGTTGTTTTTGTGCAGAAATAAAAGT 58.773 29.630 10.13 0.00 0.00 2.66
2965 12061 8.778358 TGTTGTTTTTGTGCAGAAATAAAAGTT 58.222 25.926 10.13 0.00 0.00 2.66
2966 12062 9.261318 GTTGTTTTTGTGCAGAAATAAAAGTTC 57.739 29.630 10.13 0.00 0.00 3.01
2967 12063 8.770438 TGTTTTTGTGCAGAAATAAAAGTTCT 57.230 26.923 10.13 0.00 35.69 3.01
2968 12064 8.868916 TGTTTTTGTGCAGAAATAAAAGTTCTC 58.131 29.630 10.13 0.00 32.96 2.87
2969 12065 7.678194 TTTTGTGCAGAAATAAAAGTTCTCG 57.322 32.000 10.13 0.00 32.96 4.04
2970 12066 5.356882 TGTGCAGAAATAAAAGTTCTCGG 57.643 39.130 0.00 0.00 32.96 4.63
2971 12067 5.060506 TGTGCAGAAATAAAAGTTCTCGGA 58.939 37.500 0.00 0.00 32.96 4.55
2972 12068 5.529430 TGTGCAGAAATAAAAGTTCTCGGAA 59.471 36.000 0.00 0.00 32.96 4.30
2973 12069 6.206634 TGTGCAGAAATAAAAGTTCTCGGAAT 59.793 34.615 0.00 0.00 32.96 3.01
2974 12070 6.524586 GTGCAGAAATAAAAGTTCTCGGAATG 59.475 38.462 0.00 0.00 32.96 2.67
2975 12071 6.030228 GCAGAAATAAAAGTTCTCGGAATGG 58.970 40.000 0.00 0.00 32.96 3.16
2976 12072 6.128007 GCAGAAATAAAAGTTCTCGGAATGGA 60.128 38.462 0.00 0.00 32.96 3.41
2977 12073 7.574967 GCAGAAATAAAAGTTCTCGGAATGGAA 60.575 37.037 0.00 0.00 32.96 3.53
2978 12074 7.750903 CAGAAATAAAAGTTCTCGGAATGGAAC 59.249 37.037 0.00 0.00 41.24 3.62
2979 12075 5.796350 ATAAAAGTTCTCGGAATGGAACG 57.204 39.130 0.00 0.00 44.33 3.95
2980 12076 3.396260 AAAGTTCTCGGAATGGAACGA 57.604 42.857 0.00 0.00 44.33 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.536161 TGCTAATGAGAAAAGAAAAGCCAGT 59.464 36.000 0.00 0.00 0.00 4.00
4 5 6.403866 TTGCTAATGAGAAAAGAAAAGCCA 57.596 33.333 0.00 0.00 0.00 4.75
5 6 7.895975 ATTTGCTAATGAGAAAAGAAAAGCC 57.104 32.000 0.00 0.00 33.47 4.35
6 7 9.590088 CAAATTTGCTAATGAGAAAAGAAAAGC 57.410 29.630 5.01 0.00 33.47 3.51
16 17 8.830580 GCTAGATGTACAAATTTGCTAATGAGA 58.169 33.333 18.12 0.00 0.00 3.27
17 18 8.072567 GGCTAGATGTACAAATTTGCTAATGAG 58.927 37.037 18.12 8.68 0.00 2.90
18 19 7.555914 TGGCTAGATGTACAAATTTGCTAATGA 59.444 33.333 18.12 0.00 0.00 2.57
22 23 7.555914 TCATTGGCTAGATGTACAAATTTGCTA 59.444 33.333 18.12 9.64 0.00 3.49
31 32 9.502091 GGTTATATTTCATTGGCTAGATGTACA 57.498 33.333 0.00 0.00 0.00 2.90
32 33 8.947115 GGGTTATATTTCATTGGCTAGATGTAC 58.053 37.037 0.00 0.00 0.00 2.90
34 35 7.526041 TGGGTTATATTTCATTGGCTAGATGT 58.474 34.615 0.00 0.00 0.00 3.06
35 36 8.585471 ATGGGTTATATTTCATTGGCTAGATG 57.415 34.615 0.00 0.00 0.00 2.90
39 40 9.821240 ACATTATGGGTTATATTTCATTGGCTA 57.179 29.630 0.00 0.00 0.00 3.93
46 47 9.653516 ACAATGGACATTATGGGTTATATTTCA 57.346 29.630 0.00 0.00 0.00 2.69
49 50 9.881773 AGAACAATGGACATTATGGGTTATATT 57.118 29.630 0.00 0.00 0.00 1.28
50 51 9.881773 AAGAACAATGGACATTATGGGTTATAT 57.118 29.630 0.00 0.00 0.00 0.86
52 53 9.707957 TTAAGAACAATGGACATTATGGGTTAT 57.292 29.630 0.00 0.00 0.00 1.89
53 54 9.707957 ATTAAGAACAATGGACATTATGGGTTA 57.292 29.630 0.00 0.00 0.00 2.85
54 55 8.608185 ATTAAGAACAATGGACATTATGGGTT 57.392 30.769 0.00 0.00 0.00 4.11
55 56 9.707957 TTATTAAGAACAATGGACATTATGGGT 57.292 29.630 0.00 0.00 0.00 4.51
83 84 8.512138 GCCTTGACTTATACACTTGTTATTGTT 58.488 33.333 0.00 0.00 0.00 2.83
84 85 7.120726 GGCCTTGACTTATACACTTGTTATTGT 59.879 37.037 0.00 0.00 0.00 2.71
86 87 7.120726 GTGGCCTTGACTTATACACTTGTTATT 59.879 37.037 3.32 0.00 0.00 1.40
88 89 5.935789 GTGGCCTTGACTTATACACTTGTTA 59.064 40.000 3.32 0.00 0.00 2.41
89 90 4.760204 GTGGCCTTGACTTATACACTTGTT 59.240 41.667 3.32 0.00 0.00 2.83
90 91 4.041691 AGTGGCCTTGACTTATACACTTGT 59.958 41.667 3.32 0.00 34.36 3.16
91 92 4.579869 AGTGGCCTTGACTTATACACTTG 58.420 43.478 3.32 0.00 34.36 3.16
92 93 4.910458 AGTGGCCTTGACTTATACACTT 57.090 40.909 3.32 0.00 34.36 3.16
93 94 4.323562 GGAAGTGGCCTTGACTTATACACT 60.324 45.833 3.32 0.00 39.16 3.55
96 97 3.939592 GTGGAAGTGGCCTTGACTTATAC 59.060 47.826 3.32 4.73 33.71 1.47
97 98 3.369052 CGTGGAAGTGGCCTTGACTTATA 60.369 47.826 3.32 0.00 33.71 0.98
98 99 2.615493 CGTGGAAGTGGCCTTGACTTAT 60.615 50.000 3.32 0.00 33.71 1.73
99 100 1.270625 CGTGGAAGTGGCCTTGACTTA 60.271 52.381 3.32 0.00 33.71 2.24
100 101 0.535102 CGTGGAAGTGGCCTTGACTT 60.535 55.000 3.32 5.30 36.33 3.01
101 102 1.071471 CGTGGAAGTGGCCTTGACT 59.929 57.895 3.32 0.00 0.00 3.41
102 103 1.966451 CCGTGGAAGTGGCCTTGAC 60.966 63.158 3.32 0.00 0.00 3.18
103 104 2.429930 CCGTGGAAGTGGCCTTGA 59.570 61.111 3.32 0.00 0.00 3.02
104 105 2.672996 CCCGTGGAAGTGGCCTTG 60.673 66.667 3.32 0.00 0.00 3.61
105 106 4.660938 GCCCGTGGAAGTGGCCTT 62.661 66.667 3.32 0.00 39.30 4.35
136 137 2.567564 TACTTAGCGGGTGAAGGCGC 62.568 60.000 0.00 0.00 0.00 6.53
137 138 0.104304 ATACTTAGCGGGTGAAGGCG 59.896 55.000 0.00 0.00 0.00 5.52
138 139 2.866855 GCTATACTTAGCGGGTGAAGGC 60.867 54.545 0.00 0.00 41.38 4.35
139 140 3.027974 GCTATACTTAGCGGGTGAAGG 57.972 52.381 0.00 0.00 41.38 3.46
166 167 5.833667 TCTCGCTTCTCCCTGATAAAATAGA 59.166 40.000 0.00 0.00 0.00 1.98
176 177 0.038159 ACGTTTCTCGCTTCTCCCTG 60.038 55.000 0.00 0.00 44.19 4.45
227 228 1.279558 ACTCTCTCTAGACGCTGACCA 59.720 52.381 0.00 0.00 0.00 4.02
228 229 1.937899 GACTCTCTCTAGACGCTGACC 59.062 57.143 0.00 0.00 0.00 4.02
229 230 1.591158 CGACTCTCTCTAGACGCTGAC 59.409 57.143 0.00 0.00 0.00 3.51
230 231 1.477295 TCGACTCTCTCTAGACGCTGA 59.523 52.381 0.00 0.00 35.18 4.26
232 233 1.805120 GCTCGACTCTCTCTAGACGCT 60.805 57.143 0.00 0.00 35.18 5.07
233 234 0.580104 GCTCGACTCTCTCTAGACGC 59.420 60.000 0.00 0.00 35.18 5.19
236 237 1.112950 TCGGCTCGACTCTCTCTAGA 58.887 55.000 0.00 0.00 0.00 2.43
237 238 1.798223 CATCGGCTCGACTCTCTCTAG 59.202 57.143 0.00 0.00 39.18 2.43
238 239 1.541452 CCATCGGCTCGACTCTCTCTA 60.541 57.143 0.00 0.00 39.18 2.43
239 240 0.817634 CCATCGGCTCGACTCTCTCT 60.818 60.000 0.00 0.00 39.18 3.10
240 241 0.816018 TCCATCGGCTCGACTCTCTC 60.816 60.000 0.00 0.00 39.18 3.20
241 242 0.394488 TTCCATCGGCTCGACTCTCT 60.394 55.000 0.00 0.00 39.18 3.10
242 243 0.671251 ATTCCATCGGCTCGACTCTC 59.329 55.000 0.00 0.00 39.18 3.20
244 245 0.671251 AGATTCCATCGGCTCGACTC 59.329 55.000 0.00 0.00 39.18 3.36
246 247 1.861575 GAAAGATTCCATCGGCTCGAC 59.138 52.381 0.00 0.00 39.18 4.20
247 248 1.480545 TGAAAGATTCCATCGGCTCGA 59.519 47.619 0.00 0.00 41.13 4.04
248 249 1.939974 TGAAAGATTCCATCGGCTCG 58.060 50.000 0.00 0.00 0.00 5.03
249 250 2.551459 CCATGAAAGATTCCATCGGCTC 59.449 50.000 0.00 0.00 0.00 4.70
250 251 2.173356 TCCATGAAAGATTCCATCGGCT 59.827 45.455 0.00 0.00 0.00 5.52
271 272 6.448006 CCGTCTTCTTTCACGAGGATATATT 58.552 40.000 0.00 0.00 38.32 1.28
274 275 3.491104 GCCGTCTTCTTTCACGAGGATAT 60.491 47.826 0.00 0.00 38.32 1.63
275 276 2.159282 GCCGTCTTCTTTCACGAGGATA 60.159 50.000 0.00 0.00 38.32 2.59
277 278 0.038526 GCCGTCTTCTTTCACGAGGA 60.039 55.000 0.00 0.00 38.32 3.71
280 281 1.595794 GTTTGCCGTCTTCTTTCACGA 59.404 47.619 0.00 0.00 38.32 4.35
293 294 1.721133 GCGAGTTGAACGTTTGCCG 60.721 57.895 0.46 3.84 44.03 5.69
294 295 1.370051 GGCGAGTTGAACGTTTGCC 60.370 57.895 0.46 0.03 0.00 4.52
296 297 2.349155 GGTAAGGCGAGTTGAACGTTTG 60.349 50.000 0.46 0.00 0.00 2.93
298 299 1.505425 GGTAAGGCGAGTTGAACGTT 58.495 50.000 0.00 0.00 0.00 3.99
299 300 0.665369 CGGTAAGGCGAGTTGAACGT 60.665 55.000 0.00 0.00 0.00 3.99
300 301 1.349259 CCGGTAAGGCGAGTTGAACG 61.349 60.000 0.00 0.00 0.00 3.95
301 302 0.320160 ACCGGTAAGGCGAGTTGAAC 60.320 55.000 4.49 0.00 46.52 3.18
302 303 0.393820 AACCGGTAAGGCGAGTTGAA 59.606 50.000 8.00 0.00 46.52 2.69
303 304 0.320073 CAACCGGTAAGGCGAGTTGA 60.320 55.000 8.00 0.00 46.52 3.18
306 307 1.291272 GTCAACCGGTAAGGCGAGT 59.709 57.895 8.00 0.00 46.52 4.18
307 308 1.447314 GGTCAACCGGTAAGGCGAG 60.447 63.158 8.00 0.00 46.52 5.03
308 309 1.880819 GAGGTCAACCGGTAAGGCGA 61.881 60.000 8.00 0.00 46.52 5.54
309 310 1.447314 GAGGTCAACCGGTAAGGCG 60.447 63.158 8.00 0.00 46.52 5.52
311 312 5.995186 CCTTTGGAGGTCAACCGGTAAGG 62.995 56.522 8.00 10.29 41.36 2.69
312 313 2.423577 CTTTGGAGGTCAACCGGTAAG 58.576 52.381 8.00 3.56 42.08 2.34
313 314 1.072648 CCTTTGGAGGTCAACCGGTAA 59.927 52.381 8.00 0.00 42.08 2.85
314 315 0.688487 CCTTTGGAGGTCAACCGGTA 59.312 55.000 8.00 0.00 42.08 4.02
315 316 1.057851 TCCTTTGGAGGTCAACCGGT 61.058 55.000 0.00 0.00 43.97 5.28
316 317 0.321653 CTCCTTTGGAGGTCAACCGG 60.322 60.000 0.00 0.00 45.43 5.28
317 318 3.233355 CTCCTTTGGAGGTCAACCG 57.767 57.895 5.75 0.00 45.43 4.44
362 6791 0.388294 GTAGATGCCACGGGACTACC 59.612 60.000 0.00 0.00 0.00 3.18
363 6792 0.030369 CGTAGATGCCACGGGACTAC 59.970 60.000 0.00 0.00 35.78 2.73
364 6793 1.731433 GCGTAGATGCCACGGGACTA 61.731 60.000 0.00 0.00 39.75 2.59
365 6794 3.077519 GCGTAGATGCCACGGGACT 62.078 63.158 0.00 0.00 39.75 3.85
436 8121 1.947678 GCCATCAGGTTGAGGTGAGTG 60.948 57.143 0.00 0.00 37.19 3.51
437 8122 0.326264 GCCATCAGGTTGAGGTGAGT 59.674 55.000 0.00 0.00 37.19 3.41
438 8123 0.325933 TGCCATCAGGTTGAGGTGAG 59.674 55.000 0.00 0.00 37.19 3.51
439 8124 0.770499 TTGCCATCAGGTTGAGGTGA 59.230 50.000 0.00 0.00 37.19 4.02
440 8125 0.883833 GTTGCCATCAGGTTGAGGTG 59.116 55.000 0.00 0.00 37.19 4.00
441 8126 0.478072 TGTTGCCATCAGGTTGAGGT 59.522 50.000 0.00 0.00 37.19 3.85
442 8127 1.843368 ATGTTGCCATCAGGTTGAGG 58.157 50.000 0.00 0.00 37.19 3.86
443 8128 2.352651 CGTATGTTGCCATCAGGTTGAG 59.647 50.000 0.00 0.00 37.19 3.02
444 8129 2.355197 CGTATGTTGCCATCAGGTTGA 58.645 47.619 0.00 0.00 37.19 3.18
514 8199 1.441682 GACAGGAACGTCGTCGGAC 60.442 63.158 7.05 0.00 41.85 4.79
515 8200 1.239296 ATGACAGGAACGTCGTCGGA 61.239 55.000 7.05 0.00 41.85 4.55
516 8201 1.071019 CATGACAGGAACGTCGTCGG 61.071 60.000 7.05 0.00 41.85 4.79
519 8204 0.388649 GCTCATGACAGGAACGTCGT 60.389 55.000 0.00 0.00 38.84 4.34
521 8206 0.388649 ACGCTCATGACAGGAACGTC 60.389 55.000 12.32 0.00 32.17 4.34
522 8207 0.033504 AACGCTCATGACAGGAACGT 59.966 50.000 12.32 12.32 38.57 3.99
524 8209 0.716108 CGAACGCTCATGACAGGAAC 59.284 55.000 0.00 0.00 0.00 3.62
525 8210 0.317160 ACGAACGCTCATGACAGGAA 59.683 50.000 0.00 0.00 0.00 3.36
526 8211 0.388520 CACGAACGCTCATGACAGGA 60.389 55.000 0.00 0.00 0.00 3.86
527 8212 0.667487 ACACGAACGCTCATGACAGG 60.667 55.000 0.00 0.00 0.00 4.00
528 8213 1.136529 CAACACGAACGCTCATGACAG 60.137 52.381 0.00 0.00 0.00 3.51
529 8214 0.858583 CAACACGAACGCTCATGACA 59.141 50.000 0.00 0.00 0.00 3.58
556 8241 8.874816 GGTTGACTAGCTAGATAAGTTTTTCTG 58.125 37.037 27.45 0.00 0.00 3.02
558 8243 8.874816 CAGGTTGACTAGCTAGATAAGTTTTTC 58.125 37.037 27.45 11.02 32.12 2.29
577 8266 1.209261 TGCAAGTGTCTGTCAGGTTGA 59.791 47.619 0.00 0.00 0.00 3.18
583 8272 1.887242 GCCGTGCAAGTGTCTGTCA 60.887 57.895 0.00 0.00 0.00 3.58
613 8303 1.867233 CGCGCTGGTGCTTAATAATCT 59.133 47.619 5.56 0.00 36.97 2.40
700 8397 3.476646 CTGCGAGTGCTGCGACTG 61.477 66.667 9.00 4.34 43.34 3.51
707 8404 2.125753 GCTACAGCTGCGAGTGCT 60.126 61.111 15.27 0.00 43.34 4.40
985 8715 2.825836 CATCCGGGAGCTGTTGGC 60.826 66.667 0.00 0.00 42.19 4.52
1503 9233 3.923563 GAGCGAGCGCAGGTGAAGT 62.924 63.158 17.68 0.00 44.88 3.01
2076 9869 5.404066 TCATACACACACATCGTTTACACAG 59.596 40.000 0.00 0.00 0.00 3.66
2077 9870 5.290386 TCATACACACACATCGTTTACACA 58.710 37.500 0.00 0.00 0.00 3.72
2091 9884 6.959361 AGTGACACAAAAGAATCATACACAC 58.041 36.000 8.59 0.00 0.00 3.82
2134 9929 2.503920 AGCAATACCGGCTTACGTAG 57.496 50.000 0.00 0.00 38.81 3.51
2319 11407 1.310933 GCATGGTGCTCTCCTTGGTG 61.311 60.000 0.00 0.00 40.96 4.17
2324 11412 2.005266 ATGGGCATGGTGCTCTCCT 61.005 57.895 3.23 0.00 46.08 3.69
2381 11469 0.747283 CTCTGGCATGAAGGTGGAGC 60.747 60.000 0.00 0.00 0.00 4.70
2393 11481 2.853542 TCCAAGGTGGCTCTGGCA 60.854 61.111 0.00 0.00 37.47 4.92
2440 11529 1.860950 CCACAACTTCGCCGATAGATG 59.139 52.381 0.00 0.00 39.76 2.90
2448 11537 2.032681 AGAGCCCACAACTTCGCC 59.967 61.111 0.00 0.00 0.00 5.54
2449 11538 1.004440 AGAGAGCCCACAACTTCGC 60.004 57.895 0.00 0.00 0.00 4.70
2450 11539 0.390472 GGAGAGAGCCCACAACTTCG 60.390 60.000 0.00 0.00 0.00 3.79
2466 11555 2.190578 GCGGTGATCAAGGGGGAG 59.809 66.667 0.00 0.00 0.00 4.30
2483 11572 0.748005 CACCTATTCGTTGCCCTGGG 60.748 60.000 8.86 8.86 0.00 4.45
2484 11573 0.748005 CCACCTATTCGTTGCCCTGG 60.748 60.000 0.00 0.00 0.00 4.45
2485 11574 0.251916 TCCACCTATTCGTTGCCCTG 59.748 55.000 0.00 0.00 0.00 4.45
2486 11575 0.541863 CTCCACCTATTCGTTGCCCT 59.458 55.000 0.00 0.00 0.00 5.19
2487 11576 0.463833 CCTCCACCTATTCGTTGCCC 60.464 60.000 0.00 0.00 0.00 5.36
2513 11602 3.425162 CCTAAAACCAAGGCAGAGAGT 57.575 47.619 0.00 0.00 0.00 3.24
2529 11619 5.306160 ACACACTAAACCTAACTCTGCCTAA 59.694 40.000 0.00 0.00 0.00 2.69
2534 11624 5.607477 TGGAACACACTAAACCTAACTCTG 58.393 41.667 0.00 0.00 0.00 3.35
2559 11649 3.864686 CGCCATCCAAACGCTCCG 61.865 66.667 0.00 0.00 0.00 4.63
2575 11665 5.992217 TGGGAAAATTTTATTCCAAACACCG 59.008 36.000 14.15 0.00 46.69 4.94
2591 11681 5.536161 CGAGATGGGTTGATATTGGGAAAAT 59.464 40.000 0.00 0.00 0.00 1.82
2596 11686 3.557898 CCTCGAGATGGGTTGATATTGGG 60.558 52.174 15.71 0.00 0.00 4.12
2602 11692 0.982852 TGCCCTCGAGATGGGTTGAT 60.983 55.000 15.71 0.00 46.22 2.57
2645 11736 8.810990 AAATAATGGAATAAAGTTCCCACGTA 57.189 30.769 4.50 0.00 37.79 3.57
2674 11765 3.686016 ACAACACCAGATCCATTACACC 58.314 45.455 0.00 0.00 0.00 4.16
2722 11817 2.360801 CCCCAAACAAAGACGTCACAAT 59.639 45.455 19.50 0.00 0.00 2.71
2740 11836 2.037367 GGACCTTTGGCTTCCCCC 59.963 66.667 0.00 0.00 0.00 5.40
2781 11877 0.912486 AGGATGCTAGAACCACCACC 59.088 55.000 0.00 0.00 0.00 4.61
2809 11905 4.344968 TGGAGATGTATCACCATCGATGTT 59.655 41.667 23.27 7.21 44.76 2.71
2822 11918 9.530633 GAAAAAGTAGATACGTTGGAGATGTAT 57.469 33.333 0.00 0.00 41.95 2.29
2823 11919 8.746530 AGAAAAAGTAGATACGTTGGAGATGTA 58.253 33.333 0.00 0.00 34.38 2.29
2824 11920 7.612677 AGAAAAAGTAGATACGTTGGAGATGT 58.387 34.615 0.00 0.00 0.00 3.06
2825 11921 9.582431 TTAGAAAAAGTAGATACGTTGGAGATG 57.418 33.333 0.00 0.00 0.00 2.90
2826 11922 9.583765 GTTAGAAAAAGTAGATACGTTGGAGAT 57.416 33.333 0.00 0.00 0.00 2.75
2827 11923 7.752239 CGTTAGAAAAAGTAGATACGTTGGAGA 59.248 37.037 0.00 0.00 0.00 3.71
2828 11924 7.462462 GCGTTAGAAAAAGTAGATACGTTGGAG 60.462 40.741 0.00 0.00 0.00 3.86
2829 11925 6.308766 GCGTTAGAAAAAGTAGATACGTTGGA 59.691 38.462 0.00 0.00 0.00 3.53
2830 11926 6.309737 AGCGTTAGAAAAAGTAGATACGTTGG 59.690 38.462 0.00 0.00 0.00 3.77
2831 11927 7.274442 AGCGTTAGAAAAAGTAGATACGTTG 57.726 36.000 0.00 0.00 0.00 4.10
2832 11928 7.880059 AAGCGTTAGAAAAAGTAGATACGTT 57.120 32.000 0.00 0.00 0.00 3.99
2833 11929 7.880059 AAAGCGTTAGAAAAAGTAGATACGT 57.120 32.000 0.00 0.00 0.00 3.57
2834 11930 7.896782 GGAAAAGCGTTAGAAAAAGTAGATACG 59.103 37.037 0.00 0.00 0.00 3.06
2835 11931 8.933807 AGGAAAAGCGTTAGAAAAAGTAGATAC 58.066 33.333 0.00 0.00 0.00 2.24
2836 11932 9.148104 GAGGAAAAGCGTTAGAAAAAGTAGATA 57.852 33.333 0.00 0.00 0.00 1.98
2837 11933 7.878644 AGAGGAAAAGCGTTAGAAAAAGTAGAT 59.121 33.333 0.00 0.00 0.00 1.98
2838 11934 7.215085 AGAGGAAAAGCGTTAGAAAAAGTAGA 58.785 34.615 0.00 0.00 0.00 2.59
2839 11935 7.422878 AGAGGAAAAGCGTTAGAAAAAGTAG 57.577 36.000 0.00 0.00 0.00 2.57
2840 11936 7.281549 ACAAGAGGAAAAGCGTTAGAAAAAGTA 59.718 33.333 0.00 0.00 0.00 2.24
2841 11937 6.095021 ACAAGAGGAAAAGCGTTAGAAAAAGT 59.905 34.615 0.00 0.00 0.00 2.66
2842 11938 6.495706 ACAAGAGGAAAAGCGTTAGAAAAAG 58.504 36.000 0.00 0.00 0.00 2.27
2843 11939 6.445357 ACAAGAGGAAAAGCGTTAGAAAAA 57.555 33.333 0.00 0.00 0.00 1.94
2844 11940 6.445357 AACAAGAGGAAAAGCGTTAGAAAA 57.555 33.333 0.00 0.00 0.00 2.29
2845 11941 6.445357 AAACAAGAGGAAAAGCGTTAGAAA 57.555 33.333 0.00 0.00 0.00 2.52
2846 11942 6.262601 CAAAACAAGAGGAAAAGCGTTAGAA 58.737 36.000 0.00 0.00 0.00 2.10
2847 11943 5.220970 CCAAAACAAGAGGAAAAGCGTTAGA 60.221 40.000 0.00 0.00 0.00 2.10
2848 11944 4.976116 CCAAAACAAGAGGAAAAGCGTTAG 59.024 41.667 0.00 0.00 0.00 2.34
2849 11945 4.641094 TCCAAAACAAGAGGAAAAGCGTTA 59.359 37.500 0.00 0.00 0.00 3.18
2850 11946 3.445805 TCCAAAACAAGAGGAAAAGCGTT 59.554 39.130 0.00 0.00 0.00 4.84
2851 11947 3.020984 TCCAAAACAAGAGGAAAAGCGT 58.979 40.909 0.00 0.00 0.00 5.07
2852 11948 3.066760 AGTCCAAAACAAGAGGAAAAGCG 59.933 43.478 0.00 0.00 32.30 4.68
2853 11949 4.339530 AGAGTCCAAAACAAGAGGAAAAGC 59.660 41.667 0.00 0.00 32.30 3.51
2854 11950 7.568199 TTAGAGTCCAAAACAAGAGGAAAAG 57.432 36.000 0.00 0.00 32.30 2.27
2855 11951 8.533569 AATTAGAGTCCAAAACAAGAGGAAAA 57.466 30.769 0.00 0.00 32.30 2.29
2856 11952 8.413229 CAAATTAGAGTCCAAAACAAGAGGAAA 58.587 33.333 0.00 0.00 32.30 3.13
2857 11953 7.470009 GCAAATTAGAGTCCAAAACAAGAGGAA 60.470 37.037 0.00 0.00 32.30 3.36
2858 11954 6.016276 GCAAATTAGAGTCCAAAACAAGAGGA 60.016 38.462 0.00 0.00 0.00 3.71
2859 11955 6.152379 GCAAATTAGAGTCCAAAACAAGAGG 58.848 40.000 0.00 0.00 0.00 3.69
2860 11956 6.738114 TGCAAATTAGAGTCCAAAACAAGAG 58.262 36.000 0.00 0.00 0.00 2.85
2861 11957 6.707440 TGCAAATTAGAGTCCAAAACAAGA 57.293 33.333 0.00 0.00 0.00 3.02
2862 11958 7.147312 TCATGCAAATTAGAGTCCAAAACAAG 58.853 34.615 0.00 0.00 0.00 3.16
2863 11959 7.048629 TCATGCAAATTAGAGTCCAAAACAA 57.951 32.000 0.00 0.00 0.00 2.83
2864 11960 6.647334 TCATGCAAATTAGAGTCCAAAACA 57.353 33.333 0.00 0.00 0.00 2.83
2865 11961 8.437742 CAAATCATGCAAATTAGAGTCCAAAAC 58.562 33.333 0.00 0.00 0.00 2.43
2866 11962 8.366401 TCAAATCATGCAAATTAGAGTCCAAAA 58.634 29.630 0.00 0.00 0.00 2.44
2867 11963 7.894708 TCAAATCATGCAAATTAGAGTCCAAA 58.105 30.769 0.00 0.00 0.00 3.28
2868 11964 7.465353 TCAAATCATGCAAATTAGAGTCCAA 57.535 32.000 0.00 0.00 0.00 3.53
2869 11965 7.465353 TTCAAATCATGCAAATTAGAGTCCA 57.535 32.000 0.00 0.00 0.00 4.02
2879 11975 9.213799 GGGTTAGTTTTATTCAAATCATGCAAA 57.786 29.630 0.00 0.00 0.00 3.68
2880 11976 7.543868 CGGGTTAGTTTTATTCAAATCATGCAA 59.456 33.333 0.00 0.00 0.00 4.08
2881 11977 7.032580 CGGGTTAGTTTTATTCAAATCATGCA 58.967 34.615 0.00 0.00 0.00 3.96
2882 11978 6.475402 CCGGGTTAGTTTTATTCAAATCATGC 59.525 38.462 0.00 0.00 0.00 4.06
2883 11979 7.700656 GTCCGGGTTAGTTTTATTCAAATCATG 59.299 37.037 0.00 0.00 0.00 3.07
2884 11980 7.614192 AGTCCGGGTTAGTTTTATTCAAATCAT 59.386 33.333 0.00 0.00 0.00 2.45
2885 11981 6.943718 AGTCCGGGTTAGTTTTATTCAAATCA 59.056 34.615 0.00 0.00 0.00 2.57
2886 11982 7.120138 TCAGTCCGGGTTAGTTTTATTCAAATC 59.880 37.037 0.00 0.00 0.00 2.17
2887 11983 6.943718 TCAGTCCGGGTTAGTTTTATTCAAAT 59.056 34.615 0.00 0.00 0.00 2.32
2888 11984 6.297582 TCAGTCCGGGTTAGTTTTATTCAAA 58.702 36.000 0.00 0.00 0.00 2.69
2889 11985 5.867330 TCAGTCCGGGTTAGTTTTATTCAA 58.133 37.500 0.00 0.00 0.00 2.69
2890 11986 5.486735 TCAGTCCGGGTTAGTTTTATTCA 57.513 39.130 0.00 0.00 0.00 2.57
2891 11987 5.220796 GCATCAGTCCGGGTTAGTTTTATTC 60.221 44.000 0.00 0.00 0.00 1.75
2892 11988 4.638865 GCATCAGTCCGGGTTAGTTTTATT 59.361 41.667 0.00 0.00 0.00 1.40
2893 11989 4.080526 AGCATCAGTCCGGGTTAGTTTTAT 60.081 41.667 0.00 0.00 0.00 1.40
2894 11990 3.262405 AGCATCAGTCCGGGTTAGTTTTA 59.738 43.478 0.00 0.00 0.00 1.52
2895 11991 2.039879 AGCATCAGTCCGGGTTAGTTTT 59.960 45.455 0.00 0.00 0.00 2.43
2896 11992 1.628846 AGCATCAGTCCGGGTTAGTTT 59.371 47.619 0.00 0.00 0.00 2.66
2897 11993 1.066143 CAGCATCAGTCCGGGTTAGTT 60.066 52.381 0.00 0.00 0.00 2.24
2898 11994 0.537188 CAGCATCAGTCCGGGTTAGT 59.463 55.000 0.00 0.00 0.00 2.24
2899 11995 0.537188 ACAGCATCAGTCCGGGTTAG 59.463 55.000 0.00 0.00 0.00 2.34
2900 11996 0.981183 AACAGCATCAGTCCGGGTTA 59.019 50.000 0.00 0.00 0.00 2.85
2901 11997 0.110486 AAACAGCATCAGTCCGGGTT 59.890 50.000 0.00 0.00 0.00 4.11
2902 11998 0.110486 AAAACAGCATCAGTCCGGGT 59.890 50.000 0.00 0.00 0.00 5.28
2903 11999 0.804989 GAAAACAGCATCAGTCCGGG 59.195 55.000 0.00 0.00 0.00 5.73
2904 12000 1.466167 CTGAAAACAGCATCAGTCCGG 59.534 52.381 0.00 0.00 38.57 5.14
2905 12001 1.135859 GCTGAAAACAGCATCAGTCCG 60.136 52.381 15.78 0.00 46.73 4.79
2906 12002 2.626088 GCTGAAAACAGCATCAGTCC 57.374 50.000 15.78 0.00 46.73 3.85
2915 12011 5.009010 ACCATGTTAGTTCTGCTGAAAACAG 59.991 40.000 20.92 14.25 36.77 3.16
2916 12012 4.887071 ACCATGTTAGTTCTGCTGAAAACA 59.113 37.500 19.52 19.52 37.34 2.83
2917 12013 5.215160 CACCATGTTAGTTCTGCTGAAAAC 58.785 41.667 7.68 10.17 33.52 2.43
2918 12014 4.887071 ACACCATGTTAGTTCTGCTGAAAA 59.113 37.500 7.68 0.00 33.52 2.29
2919 12015 4.460263 ACACCATGTTAGTTCTGCTGAAA 58.540 39.130 7.68 0.00 33.52 2.69
2920 12016 4.085357 ACACCATGTTAGTTCTGCTGAA 57.915 40.909 1.33 1.33 0.00 3.02
2921 12017 3.769739 ACACCATGTTAGTTCTGCTGA 57.230 42.857 0.00 0.00 0.00 4.26
2922 12018 3.565482 ACAACACCATGTTAGTTCTGCTG 59.435 43.478 0.00 0.00 38.77 4.41
2923 12019 3.820557 ACAACACCATGTTAGTTCTGCT 58.179 40.909 0.00 0.00 38.77 4.24
2924 12020 4.568152 AACAACACCATGTTAGTTCTGC 57.432 40.909 0.00 0.00 41.56 4.26
2925 12021 6.811170 ACAAAAACAACACCATGTTAGTTCTG 59.189 34.615 0.00 5.99 42.49 3.02
2926 12022 6.811170 CACAAAAACAACACCATGTTAGTTCT 59.189 34.615 0.00 0.00 42.49 3.01
2927 12023 6.454981 GCACAAAAACAACACCATGTTAGTTC 60.455 38.462 0.00 0.00 42.49 3.01
2928 12024 5.350091 GCACAAAAACAACACCATGTTAGTT 59.650 36.000 0.00 0.00 42.49 2.24
2929 12025 4.867608 GCACAAAAACAACACCATGTTAGT 59.132 37.500 0.00 0.00 42.49 2.24
2930 12026 4.867047 TGCACAAAAACAACACCATGTTAG 59.133 37.500 0.00 0.00 42.49 2.34
2931 12027 4.820897 TGCACAAAAACAACACCATGTTA 58.179 34.783 0.00 0.00 42.49 2.41
2932 12028 3.668447 TGCACAAAAACAACACCATGTT 58.332 36.364 0.00 0.00 45.12 2.71
2933 12029 3.056250 TCTGCACAAAAACAACACCATGT 60.056 39.130 0.00 0.00 34.24 3.21
2934 12030 3.519579 TCTGCACAAAAACAACACCATG 58.480 40.909 0.00 0.00 0.00 3.66
2935 12031 3.883830 TCTGCACAAAAACAACACCAT 57.116 38.095 0.00 0.00 0.00 3.55
2936 12032 3.667497 TTCTGCACAAAAACAACACCA 57.333 38.095 0.00 0.00 0.00 4.17
2937 12033 6.654793 TTATTTCTGCACAAAAACAACACC 57.345 33.333 0.00 0.00 0.00 4.16
2938 12034 8.227119 ACTTTTATTTCTGCACAAAAACAACAC 58.773 29.630 0.00 0.00 0.00 3.32
2939 12035 8.316640 ACTTTTATTTCTGCACAAAAACAACA 57.683 26.923 0.00 0.00 0.00 3.33
2940 12036 9.261318 GAACTTTTATTTCTGCACAAAAACAAC 57.739 29.630 0.00 0.00 0.00 3.32
2941 12037 9.213799 AGAACTTTTATTTCTGCACAAAAACAA 57.786 25.926 0.00 0.00 31.88 2.83
2942 12038 8.770438 AGAACTTTTATTTCTGCACAAAAACA 57.230 26.923 0.00 0.00 31.88 2.83
2943 12039 8.050170 CGAGAACTTTTATTTCTGCACAAAAAC 58.950 33.333 0.00 0.00 33.30 2.43
2944 12040 7.221838 CCGAGAACTTTTATTTCTGCACAAAAA 59.778 33.333 0.00 0.00 33.30 1.94
2945 12041 6.695278 CCGAGAACTTTTATTTCTGCACAAAA 59.305 34.615 0.00 0.00 33.30 2.44
2946 12042 6.038825 TCCGAGAACTTTTATTTCTGCACAAA 59.961 34.615 0.00 0.00 33.30 2.83
2947 12043 5.529430 TCCGAGAACTTTTATTTCTGCACAA 59.471 36.000 0.00 0.00 33.30 3.33
2948 12044 5.060506 TCCGAGAACTTTTATTTCTGCACA 58.939 37.500 0.00 0.00 33.30 4.57
2949 12045 5.607119 TCCGAGAACTTTTATTTCTGCAC 57.393 39.130 0.00 0.00 33.30 4.57
2950 12046 6.349280 CCATTCCGAGAACTTTTATTTCTGCA 60.349 38.462 0.00 0.00 33.30 4.41
2951 12047 6.030228 CCATTCCGAGAACTTTTATTTCTGC 58.970 40.000 0.00 0.00 33.30 4.26
2952 12048 7.377766 TCCATTCCGAGAACTTTTATTTCTG 57.622 36.000 0.00 0.00 33.30 3.02
2953 12049 7.360946 CGTTCCATTCCGAGAACTTTTATTTCT 60.361 37.037 0.00 0.00 40.18 2.52
2954 12050 6.741358 CGTTCCATTCCGAGAACTTTTATTTC 59.259 38.462 0.00 0.00 40.18 2.17
2955 12051 6.428771 TCGTTCCATTCCGAGAACTTTTATTT 59.571 34.615 0.00 0.00 40.18 1.40
2956 12052 5.935789 TCGTTCCATTCCGAGAACTTTTATT 59.064 36.000 0.00 0.00 40.18 1.40
2957 12053 5.484715 TCGTTCCATTCCGAGAACTTTTAT 58.515 37.500 0.00 0.00 40.18 1.40
2958 12054 4.885413 TCGTTCCATTCCGAGAACTTTTA 58.115 39.130 0.00 0.00 40.18 1.52
2959 12055 3.735591 TCGTTCCATTCCGAGAACTTTT 58.264 40.909 0.00 0.00 40.18 2.27
2960 12056 3.396260 TCGTTCCATTCCGAGAACTTT 57.604 42.857 0.00 0.00 40.18 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.