Multiple sequence alignment - TraesCS2D01G436100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G436100 chr2D 100.000 2987 0 0 1 2987 546871156 546874142 0.000000e+00 5517.0
1 TraesCS2D01G436100 chr2D 86.168 1511 124 46 831 2314 546931791 546933243 0.000000e+00 1554.0
2 TraesCS2D01G436100 chr2D 90.116 779 77 0 1150 1928 555133403 555134181 0.000000e+00 1013.0
3 TraesCS2D01G436100 chr2D 87.318 481 60 1 1448 1928 547251524 547252003 1.570000e-152 549.0
4 TraesCS2D01G436100 chr2D 93.878 343 21 0 268 610 548254811 548254469 4.410000e-143 518.0
5 TraesCS2D01G436100 chr2D 80.183 328 56 7 2613 2938 109733038 109733358 1.380000e-58 237.0
6 TraesCS2D01G436100 chr2A 91.449 2374 119 34 653 2978 689710893 689708556 0.000000e+00 3182.0
7 TraesCS2D01G436100 chr2A 92.311 2107 106 21 910 2978 690409571 690411659 0.000000e+00 2942.0
8 TraesCS2D01G436100 chr2A 87.576 1320 103 30 831 2119 689631676 689630387 0.000000e+00 1472.0
9 TraesCS2D01G436100 chr2A 88.889 270 23 4 650 919 690408999 690409261 2.870000e-85 326.0
10 TraesCS2D01G436100 chr2A 83.730 252 29 8 997 1239 690534370 690534618 8.330000e-56 228.0
11 TraesCS2D01G436100 chr2A 81.421 183 14 14 16 195 689711160 689710995 6.720000e-27 132.0
12 TraesCS2D01G436100 chr2A 74.455 321 62 17 2627 2942 699100042 699100347 1.450000e-23 121.0
13 TraesCS2D01G436100 chr2A 75.342 219 41 13 2395 2604 699099866 699100080 3.170000e-15 93.5
14 TraesCS2D01G436100 chr2B 92.364 1506 70 16 608 2099 653610293 653611767 0.000000e+00 2102.0
15 TraesCS2D01G436100 chr2B 88.261 1397 101 42 831 2193 653619114 653620481 0.000000e+00 1613.0
16 TraesCS2D01G436100 chr2B 93.878 343 21 0 268 610 156589453 156589111 4.410000e-143 518.0
17 TraesCS2D01G436100 chr2B 89.046 283 14 10 1 268 653610014 653610294 4.770000e-88 335.0
18 TraesCS2D01G436100 chr2B 83.959 293 35 6 2248 2528 653612204 653612496 1.360000e-68 270.0
19 TraesCS2D01G436100 chr2B 90.476 63 6 0 2131 2193 653611766 653611828 1.910000e-12 84.2
20 TraesCS2D01G436100 chr4A 89.631 1302 93 12 810 2107 33079180 33080443 0.000000e+00 1618.0
21 TraesCS2D01G436100 chr4A 90.083 121 7 3 650 770 33075889 33076004 5.160000e-33 152.0
22 TraesCS2D01G436100 chr4A 79.126 206 34 7 2412 2610 136428945 136428742 1.870000e-27 134.0
23 TraesCS2D01G436100 chr4A 77.660 188 29 10 2712 2890 635923846 635923663 5.270000e-18 102.0
24 TraesCS2D01G436100 chr6B 94.493 345 19 0 268 612 21064049 21063705 1.580000e-147 532.0
25 TraesCS2D01G436100 chr3D 94.493 345 17 2 268 610 88091506 88091162 5.670000e-147 531.0
26 TraesCS2D01G436100 chr3D 94.203 345 19 1 266 610 524313137 524313480 2.640000e-145 525.0
27 TraesCS2D01G436100 chr3D 94.186 344 19 1 268 610 559109486 559109143 9.490000e-145 523.0
28 TraesCS2D01G436100 chr3D 78.613 173 30 5 2395 2561 347290857 347291028 1.130000e-19 108.0
29 TraesCS2D01G436100 chr7B 94.186 344 19 1 268 610 42843714 42844057 9.490000e-145 523.0
30 TraesCS2D01G436100 chrUn 93.913 345 19 2 268 610 264394323 264393979 1.230000e-143 520.0
31 TraesCS2D01G436100 chr4D 93.895 344 19 2 268 610 8274418 8274760 4.410000e-143 518.0
32 TraesCS2D01G436100 chr4D 75.908 303 54 14 2635 2933 434103129 434103416 1.440000e-28 137.0
33 TraesCS2D01G436100 chr4D 74.927 343 52 22 2613 2949 481411969 481411655 3.130000e-25 126.0
34 TraesCS2D01G436100 chr5A 76.506 332 65 9 2614 2942 709197989 709197668 5.120000e-38 169.0
35 TraesCS2D01G436100 chr7D 83.846 130 17 3 2398 2525 265268430 265268557 1.450000e-23 121.0
36 TraesCS2D01G436100 chr7D 77.654 179 29 9 2411 2581 457419066 457419241 6.810000e-17 99.0
37 TraesCS2D01G436100 chr7A 74.295 319 64 11 2627 2938 70891714 70891407 5.230000e-23 119.0
38 TraesCS2D01G436100 chr4B 77.143 210 40 6 2412 2614 415511155 415511363 6.770000e-22 115.0
39 TraesCS2D01G436100 chr5D 77.297 185 30 10 2398 2574 385964854 385964674 6.810000e-17 99.0
40 TraesCS2D01G436100 chr1A 79.412 136 20 8 2807 2938 497080222 497080091 4.100000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G436100 chr2D 546871156 546874142 2986 False 5517.0 5517 100.00000 1 2987 1 chr2D.!!$F2 2986
1 TraesCS2D01G436100 chr2D 546931791 546933243 1452 False 1554.0 1554 86.16800 831 2314 1 chr2D.!!$F3 1483
2 TraesCS2D01G436100 chr2D 555133403 555134181 778 False 1013.0 1013 90.11600 1150 1928 1 chr2D.!!$F5 778
3 TraesCS2D01G436100 chr2A 689708556 689711160 2604 True 1657.0 3182 86.43500 16 2978 2 chr2A.!!$R2 2962
4 TraesCS2D01G436100 chr2A 690408999 690411659 2660 False 1634.0 2942 90.60000 650 2978 2 chr2A.!!$F2 2328
5 TraesCS2D01G436100 chr2A 689630387 689631676 1289 True 1472.0 1472 87.57600 831 2119 1 chr2A.!!$R1 1288
6 TraesCS2D01G436100 chr2B 653619114 653620481 1367 False 1613.0 1613 88.26100 831 2193 1 chr2B.!!$F1 1362
7 TraesCS2D01G436100 chr2B 653610014 653612496 2482 False 697.8 2102 88.96125 1 2528 4 chr2B.!!$F2 2527
8 TraesCS2D01G436100 chr4A 33075889 33080443 4554 False 885.0 1618 89.85700 650 2107 2 chr4A.!!$F1 1457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 471 0.031178 GAGCCAGGCACAACTTGTTG 59.969 55.0 15.8 11.44 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 5571 0.038599 TAGTAGGTGACAGCGGTGGA 59.961 55.0 20.2 1.6 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.276421 AGATTAGACAACGGCTGTGCT 59.724 47.619 0.00 0.00 38.84 4.40
58 59 1.394917 GATTAGACAACGGCTGTGCTG 59.605 52.381 0.00 0.00 38.84 4.41
59 60 1.227999 TTAGACAACGGCTGTGCTGC 61.228 55.000 0.00 0.00 38.84 5.25
135 139 6.942532 ACTGCATATAATTTGTGTGGTAGG 57.057 37.500 0.00 0.00 0.00 3.18
167 176 5.869579 ACAACTGTCTCAGGTCAAATATGT 58.130 37.500 1.90 0.00 35.51 2.29
168 177 5.934625 ACAACTGTCTCAGGTCAAATATGTC 59.065 40.000 1.90 0.00 35.51 3.06
247 271 1.406539 CAGCCCCTCATGCACAAATAC 59.593 52.381 0.00 0.00 0.00 1.89
262 286 8.474006 TGCACAAATACTAGTGTACTATTGTG 57.526 34.615 21.38 21.38 43.91 3.33
308 332 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
309 333 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
311 335 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
312 336 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
313 337 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
314 338 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
315 339 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
316 340 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
317 341 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
318 342 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
319 343 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
320 344 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
321 345 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
322 346 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
323 347 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
324 348 3.435327 TCAATCATGGCAGTACAACGAAC 59.565 43.478 0.00 0.00 0.00 3.95
325 349 2.535012 TCATGGCAGTACAACGAACA 57.465 45.000 0.00 0.00 0.00 3.18
326 350 2.139917 TCATGGCAGTACAACGAACAC 58.860 47.619 0.00 0.00 0.00 3.32
327 351 1.196808 CATGGCAGTACAACGAACACC 59.803 52.381 0.00 0.00 0.00 4.16
328 352 0.178301 TGGCAGTACAACGAACACCA 59.822 50.000 0.00 0.00 0.00 4.17
329 353 0.865769 GGCAGTACAACGAACACCAG 59.134 55.000 0.00 0.00 0.00 4.00
330 354 1.539496 GGCAGTACAACGAACACCAGA 60.539 52.381 0.00 0.00 0.00 3.86
331 355 2.206750 GCAGTACAACGAACACCAGAA 58.793 47.619 0.00 0.00 0.00 3.02
332 356 2.610374 GCAGTACAACGAACACCAGAAA 59.390 45.455 0.00 0.00 0.00 2.52
333 357 3.250040 GCAGTACAACGAACACCAGAAAT 59.750 43.478 0.00 0.00 0.00 2.17
334 358 4.449743 GCAGTACAACGAACACCAGAAATA 59.550 41.667 0.00 0.00 0.00 1.40
335 359 5.049954 GCAGTACAACGAACACCAGAAATAA 60.050 40.000 0.00 0.00 0.00 1.40
336 360 6.512091 GCAGTACAACGAACACCAGAAATAAA 60.512 38.462 0.00 0.00 0.00 1.40
337 361 7.411274 CAGTACAACGAACACCAGAAATAAAA 58.589 34.615 0.00 0.00 0.00 1.52
338 362 7.911205 CAGTACAACGAACACCAGAAATAAAAA 59.089 33.333 0.00 0.00 0.00 1.94
339 363 8.626526 AGTACAACGAACACCAGAAATAAAAAT 58.373 29.630 0.00 0.00 0.00 1.82
340 364 9.240159 GTACAACGAACACCAGAAATAAAAATT 57.760 29.630 0.00 0.00 0.00 1.82
342 366 9.240159 ACAACGAACACCAGAAATAAAAATTAC 57.760 29.630 0.00 0.00 0.00 1.89
343 367 9.239002 CAACGAACACCAGAAATAAAAATTACA 57.761 29.630 0.00 0.00 0.00 2.41
344 368 9.974980 AACGAACACCAGAAATAAAAATTACAT 57.025 25.926 0.00 0.00 0.00 2.29
345 369 9.620660 ACGAACACCAGAAATAAAAATTACATC 57.379 29.630 0.00 0.00 0.00 3.06
346 370 9.072294 CGAACACCAGAAATAAAAATTACATCC 57.928 33.333 0.00 0.00 0.00 3.51
347 371 9.921637 GAACACCAGAAATAAAAATTACATCCA 57.078 29.630 0.00 0.00 0.00 3.41
348 372 9.927668 AACACCAGAAATAAAAATTACATCCAG 57.072 29.630 0.00 0.00 0.00 3.86
349 373 9.308000 ACACCAGAAATAAAAATTACATCCAGA 57.692 29.630 0.00 0.00 0.00 3.86
352 376 9.971922 CCAGAAATAAAAATTACATCCAGATCC 57.028 33.333 0.00 0.00 0.00 3.36
353 377 9.669353 CAGAAATAAAAATTACATCCAGATCCG 57.331 33.333 0.00 0.00 0.00 4.18
354 378 9.408648 AGAAATAAAAATTACATCCAGATCCGT 57.591 29.630 0.00 0.00 0.00 4.69
358 382 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
359 383 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
360 384 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
361 385 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
362 386 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
363 387 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
364 388 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
365 389 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
366 390 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
367 391 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
368 392 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
369 393 0.035152 TCCGTAGACCACCTAGCGAA 60.035 55.000 0.00 0.00 0.00 4.70
370 394 0.381089 CCGTAGACCACCTAGCGAAG 59.619 60.000 0.00 0.00 0.00 3.79
371 395 1.376543 CGTAGACCACCTAGCGAAGA 58.623 55.000 0.00 0.00 0.00 2.87
372 396 1.948145 CGTAGACCACCTAGCGAAGAT 59.052 52.381 0.00 0.00 0.00 2.40
373 397 2.358267 CGTAGACCACCTAGCGAAGATT 59.642 50.000 0.00 0.00 0.00 2.40
374 398 3.562973 CGTAGACCACCTAGCGAAGATTA 59.437 47.826 0.00 0.00 0.00 1.75
375 399 4.554330 CGTAGACCACCTAGCGAAGATTAC 60.554 50.000 0.00 0.00 0.00 1.89
376 400 3.362706 AGACCACCTAGCGAAGATTACA 58.637 45.455 0.00 0.00 0.00 2.41
377 401 3.767673 AGACCACCTAGCGAAGATTACAA 59.232 43.478 0.00 0.00 0.00 2.41
378 402 4.113354 GACCACCTAGCGAAGATTACAAG 58.887 47.826 0.00 0.00 0.00 3.16
379 403 2.866762 CCACCTAGCGAAGATTACAAGC 59.133 50.000 0.00 0.00 0.00 4.01
380 404 3.521560 CACCTAGCGAAGATTACAAGCA 58.478 45.455 0.00 0.00 0.00 3.91
381 405 3.307242 CACCTAGCGAAGATTACAAGCAC 59.693 47.826 0.00 0.00 0.00 4.40
382 406 2.866762 CCTAGCGAAGATTACAAGCACC 59.133 50.000 0.00 0.00 0.00 5.01
383 407 1.359848 AGCGAAGATTACAAGCACCG 58.640 50.000 0.00 0.00 0.00 4.94
384 408 1.067142 AGCGAAGATTACAAGCACCGA 60.067 47.619 0.00 0.00 0.00 4.69
385 409 1.730064 GCGAAGATTACAAGCACCGAA 59.270 47.619 0.00 0.00 0.00 4.30
386 410 2.222819 GCGAAGATTACAAGCACCGAAG 60.223 50.000 0.00 0.00 0.00 3.79
387 411 2.222819 CGAAGATTACAAGCACCGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
388 412 1.359848 AGATTACAAGCACCGAAGCG 58.640 50.000 0.00 0.00 40.15 4.68
389 413 1.067142 AGATTACAAGCACCGAAGCGA 60.067 47.619 0.00 0.00 40.15 4.93
390 414 1.324736 GATTACAAGCACCGAAGCGAG 59.675 52.381 0.00 0.00 40.15 5.03
391 415 1.289109 TTACAAGCACCGAAGCGAGC 61.289 55.000 0.00 0.00 40.15 5.03
392 416 3.793144 CAAGCACCGAAGCGAGCC 61.793 66.667 0.00 0.00 40.15 4.70
396 420 3.181967 CACCGAAGCGAGCCGAAG 61.182 66.667 0.00 0.00 0.00 3.79
422 446 4.096003 CCGTCAACGCCCCTCCAT 62.096 66.667 0.00 0.00 38.18 3.41
423 447 2.511600 CGTCAACGCCCCTCCATC 60.512 66.667 0.00 0.00 0.00 3.51
424 448 2.668632 GTCAACGCCCCTCCATCA 59.331 61.111 0.00 0.00 0.00 3.07
425 449 1.745489 GTCAACGCCCCTCCATCAC 60.745 63.158 0.00 0.00 0.00 3.06
426 450 2.438434 CAACGCCCCTCCATCACC 60.438 66.667 0.00 0.00 0.00 4.02
427 451 4.096003 AACGCCCCTCCATCACCG 62.096 66.667 0.00 0.00 0.00 4.94
434 458 2.503061 CTCCATCACCGGAGCCAG 59.497 66.667 9.46 0.00 45.95 4.85
435 459 3.083349 TCCATCACCGGAGCCAGG 61.083 66.667 9.46 2.79 0.00 4.45
436 460 4.864334 CCATCACCGGAGCCAGGC 62.864 72.222 9.46 1.84 0.00 4.85
437 461 4.100084 CATCACCGGAGCCAGGCA 62.100 66.667 15.80 0.00 0.00 4.75
438 462 4.101448 ATCACCGGAGCCAGGCAC 62.101 66.667 15.80 7.41 0.00 5.01
440 464 4.641645 CACCGGAGCCAGGCACAA 62.642 66.667 15.80 0.00 0.00 3.33
441 465 4.643387 ACCGGAGCCAGGCACAAC 62.643 66.667 15.80 1.66 0.00 3.32
442 466 4.335647 CCGGAGCCAGGCACAACT 62.336 66.667 15.80 0.00 0.00 3.16
443 467 2.281761 CGGAGCCAGGCACAACTT 60.282 61.111 15.80 0.00 0.00 2.66
444 468 2.620112 CGGAGCCAGGCACAACTTG 61.620 63.158 15.80 0.00 0.00 3.16
445 469 1.529244 GGAGCCAGGCACAACTTGT 60.529 57.895 15.80 0.00 0.00 3.16
446 470 1.109323 GGAGCCAGGCACAACTTGTT 61.109 55.000 15.80 0.00 0.00 2.83
447 471 0.031178 GAGCCAGGCACAACTTGTTG 59.969 55.000 15.80 11.44 0.00 3.33
448 472 0.684153 AGCCAGGCACAACTTGTTGT 60.684 50.000 15.80 12.73 35.14 3.32
449 473 1.028905 GCCAGGCACAACTTGTTGTA 58.971 50.000 17.26 0.00 33.17 2.41
450 474 1.407258 GCCAGGCACAACTTGTTGTAA 59.593 47.619 17.26 0.00 33.17 2.41
451 475 2.035832 GCCAGGCACAACTTGTTGTAAT 59.964 45.455 17.26 5.47 33.17 1.89
452 476 3.254657 GCCAGGCACAACTTGTTGTAATA 59.745 43.478 17.26 0.00 33.17 0.98
453 477 4.615912 GCCAGGCACAACTTGTTGTAATAG 60.616 45.833 17.26 7.80 33.17 1.73
454 478 4.759693 CCAGGCACAACTTGTTGTAATAGA 59.240 41.667 17.26 0.00 33.17 1.98
455 479 5.415701 CCAGGCACAACTTGTTGTAATAGAT 59.584 40.000 17.26 0.92 33.17 1.98
456 480 6.317088 CAGGCACAACTTGTTGTAATAGATG 58.683 40.000 17.26 6.31 33.17 2.90
457 481 5.415701 AGGCACAACTTGTTGTAATAGATGG 59.584 40.000 17.26 5.63 33.17 3.51
458 482 5.183140 GGCACAACTTGTTGTAATAGATGGT 59.817 40.000 17.26 0.00 33.17 3.55
459 483 6.314784 GCACAACTTGTTGTAATAGATGGTC 58.685 40.000 17.26 0.00 33.17 4.02
460 484 6.534059 CACAACTTGTTGTAATAGATGGTCG 58.466 40.000 17.26 0.00 33.17 4.79
461 485 5.642063 ACAACTTGTTGTAATAGATGGTCGG 59.358 40.000 16.35 0.00 32.60 4.79
462 486 5.670792 ACTTGTTGTAATAGATGGTCGGA 57.329 39.130 0.00 0.00 0.00 4.55
463 487 6.045072 ACTTGTTGTAATAGATGGTCGGAA 57.955 37.500 0.00 0.00 0.00 4.30
464 488 6.469410 ACTTGTTGTAATAGATGGTCGGAAA 58.531 36.000 0.00 0.00 0.00 3.13
465 489 6.938030 ACTTGTTGTAATAGATGGTCGGAAAA 59.062 34.615 0.00 0.00 0.00 2.29
466 490 7.610305 ACTTGTTGTAATAGATGGTCGGAAAAT 59.390 33.333 0.00 0.00 0.00 1.82
467 491 7.931578 TGTTGTAATAGATGGTCGGAAAATT 57.068 32.000 0.00 0.00 0.00 1.82
468 492 7.757526 TGTTGTAATAGATGGTCGGAAAATTG 58.242 34.615 0.00 0.00 0.00 2.32
469 493 7.392113 TGTTGTAATAGATGGTCGGAAAATTGT 59.608 33.333 0.00 0.00 0.00 2.71
470 494 7.548196 TGTAATAGATGGTCGGAAAATTGTC 57.452 36.000 0.00 0.00 0.00 3.18
471 495 5.734855 AATAGATGGTCGGAAAATTGTCG 57.265 39.130 0.00 0.00 0.00 4.35
472 496 3.053831 AGATGGTCGGAAAATTGTCGT 57.946 42.857 0.00 0.00 0.00 4.34
473 497 2.742053 AGATGGTCGGAAAATTGTCGTG 59.258 45.455 0.00 0.00 0.00 4.35
474 498 0.589223 TGGTCGGAAAATTGTCGTGC 59.411 50.000 0.00 0.00 0.00 5.34
475 499 0.872388 GGTCGGAAAATTGTCGTGCT 59.128 50.000 0.00 0.00 0.00 4.40
476 500 2.070783 GGTCGGAAAATTGTCGTGCTA 58.929 47.619 0.00 0.00 0.00 3.49
477 501 2.481185 GGTCGGAAAATTGTCGTGCTAA 59.519 45.455 0.00 0.00 0.00 3.09
478 502 3.424433 GGTCGGAAAATTGTCGTGCTAAG 60.424 47.826 0.00 0.00 0.00 2.18
479 503 2.739913 TCGGAAAATTGTCGTGCTAAGG 59.260 45.455 0.00 0.00 0.00 2.69
480 504 2.727916 CGGAAAATTGTCGTGCTAAGGC 60.728 50.000 0.00 0.00 39.26 4.35
481 505 2.415491 GGAAAATTGTCGTGCTAAGGCC 60.415 50.000 0.00 0.00 37.74 5.19
482 506 1.173913 AAATTGTCGTGCTAAGGCCC 58.826 50.000 0.00 0.00 37.74 5.80
483 507 0.679960 AATTGTCGTGCTAAGGCCCC 60.680 55.000 0.00 0.00 37.74 5.80
484 508 1.847798 ATTGTCGTGCTAAGGCCCCA 61.848 55.000 0.00 0.00 37.74 4.96
485 509 1.847798 TTGTCGTGCTAAGGCCCCAT 61.848 55.000 0.00 0.00 37.74 4.00
486 510 0.978667 TGTCGTGCTAAGGCCCCATA 60.979 55.000 0.00 0.00 37.74 2.74
487 511 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
488 512 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
489 513 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
495 519 3.890926 GGCCCCATAGGACCAGCC 61.891 72.222 0.00 0.00 37.96 4.85
496 520 3.890926 GCCCCATAGGACCAGCCC 61.891 72.222 0.00 0.00 38.24 5.19
497 521 3.178611 CCCCATAGGACCAGCCCC 61.179 72.222 0.00 0.00 38.24 5.80
498 522 3.178611 CCCATAGGACCAGCCCCC 61.179 72.222 0.00 0.00 37.37 5.40
512 536 2.672996 CCCCCAGAACAGCAACCG 60.673 66.667 0.00 0.00 0.00 4.44
513 537 3.365265 CCCCAGAACAGCAACCGC 61.365 66.667 0.00 0.00 38.99 5.68
514 538 3.365265 CCCAGAACAGCAACCGCC 61.365 66.667 0.00 0.00 39.83 6.13
515 539 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
516 540 2.972505 CAGAACAGCAACCGCCGT 60.973 61.111 0.00 0.00 39.83 5.68
517 541 2.665185 AGAACAGCAACCGCCGTC 60.665 61.111 0.00 0.00 39.83 4.79
518 542 4.072088 GAACAGCAACCGCCGTCG 62.072 66.667 0.00 0.00 39.83 5.12
519 543 4.595538 AACAGCAACCGCCGTCGA 62.596 61.111 0.00 0.00 39.83 4.20
520 544 3.876589 AACAGCAACCGCCGTCGAT 62.877 57.895 0.00 0.00 39.83 3.59
521 545 3.853330 CAGCAACCGCCGTCGATG 61.853 66.667 0.00 0.00 39.83 3.84
522 546 4.063967 AGCAACCGCCGTCGATGA 62.064 61.111 6.11 0.00 39.83 2.92
523 547 3.115892 GCAACCGCCGTCGATGAA 61.116 61.111 6.11 0.00 38.10 2.57
524 548 2.673114 GCAACCGCCGTCGATGAAA 61.673 57.895 6.11 0.00 38.10 2.69
525 549 1.863491 CAACCGCCGTCGATGAAAA 59.137 52.632 6.11 0.00 38.10 2.29
526 550 0.236187 CAACCGCCGTCGATGAAAAA 59.764 50.000 6.11 0.00 38.10 1.94
527 551 1.135803 CAACCGCCGTCGATGAAAAAT 60.136 47.619 6.11 0.00 38.10 1.82
528 552 2.012937 ACCGCCGTCGATGAAAAATA 57.987 45.000 6.11 0.00 38.10 1.40
529 553 2.348660 ACCGCCGTCGATGAAAAATAA 58.651 42.857 6.11 0.00 38.10 1.40
530 554 2.094734 ACCGCCGTCGATGAAAAATAAC 59.905 45.455 6.11 0.00 38.10 1.89
531 555 2.350616 CGCCGTCGATGAAAAATAACG 58.649 47.619 6.11 0.00 38.10 3.18
532 556 2.222640 CGCCGTCGATGAAAAATAACGT 60.223 45.455 6.11 0.00 38.10 3.99
533 557 3.000872 CGCCGTCGATGAAAAATAACGTA 60.001 43.478 6.11 0.00 38.10 3.57
534 558 4.502558 GCCGTCGATGAAAAATAACGTAG 58.497 43.478 6.11 0.00 0.00 3.51
535 559 4.266029 GCCGTCGATGAAAAATAACGTAGA 59.734 41.667 6.11 0.00 0.00 2.59
536 560 5.051240 GCCGTCGATGAAAAATAACGTAGAT 60.051 40.000 6.11 0.00 0.00 1.98
537 561 6.569821 CCGTCGATGAAAAATAACGTAGATC 58.430 40.000 6.11 0.00 0.00 2.75
538 562 6.272317 CGTCGATGAAAAATAACGTAGATCG 58.728 40.000 0.00 0.00 46.00 3.69
539 563 6.569821 GTCGATGAAAAATAACGTAGATCGG 58.430 40.000 0.00 0.00 44.69 4.18
540 564 6.415867 GTCGATGAAAAATAACGTAGATCGGA 59.584 38.462 0.00 0.00 44.69 4.55
541 565 6.974048 TCGATGAAAAATAACGTAGATCGGAA 59.026 34.615 0.00 0.00 44.69 4.30
542 566 7.166970 TCGATGAAAAATAACGTAGATCGGAAG 59.833 37.037 0.00 0.00 44.69 3.46
543 567 6.897259 TGAAAAATAACGTAGATCGGAAGG 57.103 37.500 0.00 0.00 44.69 3.46
544 568 6.632909 TGAAAAATAACGTAGATCGGAAGGA 58.367 36.000 0.00 0.00 44.69 3.36
545 569 7.270047 TGAAAAATAACGTAGATCGGAAGGAT 58.730 34.615 0.00 0.00 44.69 3.24
553 577 1.583054 GATCGGAAGGATCCAAACCG 58.417 55.000 26.93 26.93 46.97 4.44
554 578 2.673685 TCGGAAGGATCCAAACCGA 58.326 52.632 29.50 29.50 46.97 4.69
555 579 3.543884 CGGAAGGATCCAAACCGAA 57.456 52.632 28.08 0.00 46.97 4.30
556 580 1.816074 CGGAAGGATCCAAACCGAAA 58.184 50.000 28.08 0.00 46.97 3.46
557 581 2.156098 CGGAAGGATCCAAACCGAAAA 58.844 47.619 28.08 0.00 46.97 2.29
558 582 2.095415 CGGAAGGATCCAAACCGAAAAC 60.095 50.000 28.08 3.41 46.97 2.43
559 583 2.888414 GGAAGGATCCAAACCGAAAACA 59.112 45.455 15.82 0.00 45.79 2.83
560 584 3.305131 GGAAGGATCCAAACCGAAAACAC 60.305 47.826 15.82 0.00 45.79 3.32
561 585 2.938838 AGGATCCAAACCGAAAACACA 58.061 42.857 15.82 0.00 0.00 3.72
562 586 2.621526 AGGATCCAAACCGAAAACACAC 59.378 45.455 15.82 0.00 0.00 3.82
563 587 2.603652 GGATCCAAACCGAAAACACACG 60.604 50.000 6.95 0.00 0.00 4.49
564 588 1.735386 TCCAAACCGAAAACACACGA 58.265 45.000 0.00 0.00 0.00 4.35
565 589 2.082231 TCCAAACCGAAAACACACGAA 58.918 42.857 0.00 0.00 0.00 3.85
566 590 2.159544 TCCAAACCGAAAACACACGAAC 60.160 45.455 0.00 0.00 0.00 3.95
567 591 1.835365 CAAACCGAAAACACACGAACG 59.165 47.619 0.00 0.00 0.00 3.95
568 592 1.077915 AACCGAAAACACACGAACGT 58.922 45.000 0.00 0.00 0.00 3.99
569 593 1.919918 ACCGAAAACACACGAACGTA 58.080 45.000 0.00 0.00 0.00 3.57
570 594 1.854126 ACCGAAAACACACGAACGTAG 59.146 47.619 0.00 0.00 0.00 3.51
571 595 2.118683 CCGAAAACACACGAACGTAGA 58.881 47.619 0.00 0.00 0.00 2.59
572 596 2.097733 CCGAAAACACACGAACGTAGAC 60.098 50.000 0.00 0.00 0.00 2.59
573 597 2.406368 CGAAAACACACGAACGTAGACG 60.406 50.000 0.00 0.00 46.33 4.18
574 598 2.473530 AAACACACGAACGTAGACGA 57.526 45.000 9.41 0.00 43.02 4.20
575 599 2.473530 AACACACGAACGTAGACGAA 57.526 45.000 9.41 0.00 43.02 3.85
576 600 1.746760 ACACACGAACGTAGACGAAC 58.253 50.000 9.41 1.55 43.02 3.95
577 601 1.063912 ACACACGAACGTAGACGAACA 59.936 47.619 9.41 0.00 43.02 3.18
578 602 2.110990 CACACGAACGTAGACGAACAA 58.889 47.619 9.41 0.00 43.02 2.83
579 603 2.098211 CACACGAACGTAGACGAACAAC 60.098 50.000 9.41 0.00 43.02 3.32
581 605 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
582 606 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
583 607 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
584 608 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
585 609 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
586 610 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
587 611 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
588 612 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
589 613 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
590 614 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
591 615 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
592 616 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
593 617 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
594 618 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
595 619 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
596 620 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
597 621 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
598 622 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
599 623 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
600 624 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
601 625 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
602 626 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
603 627 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
604 628 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
637 661 7.633789 ACAACATAGAGTAAGGATGAAACCAT 58.366 34.615 0.00 0.00 0.00 3.55
785 2233 5.068987 ACATGTTGTGTTTAGTGGCATTTCT 59.931 36.000 0.00 0.00 38.01 2.52
878 4059 1.367659 GTCTCTTGCCATCAGTCAGC 58.632 55.000 0.00 0.00 0.00 4.26
888 4069 3.070159 GCCATCAGTCAGCTTACCAGATA 59.930 47.826 3.97 0.00 0.00 1.98
919 4419 0.482446 AAATCACTTCCCAGCCACCA 59.518 50.000 0.00 0.00 0.00 4.17
1105 4632 4.344474 CGAGCGCGAGGGGTATCC 62.344 72.222 12.10 0.00 40.82 2.59
1443 4976 3.191539 CTCTTCTTCCAGCGCCGC 61.192 66.667 2.29 0.00 0.00 6.53
2021 5554 0.322975 ACCATAGATCGATGCCTGCC 59.677 55.000 0.54 0.00 0.00 4.85
2028 5561 3.790437 CGATGCCTGCCCAGTCCT 61.790 66.667 0.00 0.00 0.00 3.85
2029 5562 2.679716 GATGCCTGCCCAGTCCTT 59.320 61.111 0.00 0.00 0.00 3.36
2030 5563 1.452833 GATGCCTGCCCAGTCCTTC 60.453 63.158 0.00 0.00 0.00 3.46
2031 5564 2.900671 GATGCCTGCCCAGTCCTTCC 62.901 65.000 0.00 0.00 0.00 3.46
2032 5565 4.785453 GCCTGCCCAGTCCTTCCG 62.785 72.222 0.00 0.00 0.00 4.30
2033 5566 4.785453 CCTGCCCAGTCCTTCCGC 62.785 72.222 0.00 0.00 0.00 5.54
2034 5567 4.785453 CTGCCCAGTCCTTCCGCC 62.785 72.222 0.00 0.00 0.00 6.13
2037 5570 4.101448 CCCAGTCCTTCCGCCCAG 62.101 72.222 0.00 0.00 0.00 4.45
2038 5571 3.322466 CCAGTCCTTCCGCCCAGT 61.322 66.667 0.00 0.00 0.00 4.00
2039 5572 2.266055 CAGTCCTTCCGCCCAGTC 59.734 66.667 0.00 0.00 0.00 3.51
2040 5573 3.003763 AGTCCTTCCGCCCAGTCC 61.004 66.667 0.00 0.00 0.00 3.85
2064 5610 1.404315 GCTGTCACCTACTACCACTGC 60.404 57.143 0.00 0.00 0.00 4.40
2124 5674 1.332904 GCGCGCAGTATGTTTATGTCC 60.333 52.381 29.10 0.00 39.31 4.02
2131 5696 5.294306 CGCAGTATGTTTATGTCCATGAGTT 59.706 40.000 0.00 0.00 39.31 3.01
2186 5752 6.484818 TTTGTAAGCCGGTAATTCTTGTAC 57.515 37.500 1.90 0.00 0.00 2.90
2193 5759 6.588204 AGCCGGTAATTCTTGTACATATGAA 58.412 36.000 10.38 2.73 0.00 2.57
2391 6284 6.972328 CCATATTGACGGGTTGTTGATAAAAG 59.028 38.462 0.00 0.00 0.00 2.27
2394 6287 6.452494 TTGACGGGTTGTTGATAAAAGAAA 57.548 33.333 0.00 0.00 0.00 2.52
2504 6407 6.099269 TGGGTTACCTTGACAGTAATCTATCC 59.901 42.308 0.00 0.00 37.76 2.59
2507 6410 5.878406 ACCTTGACAGTAATCTATCCCAG 57.122 43.478 0.00 0.00 0.00 4.45
2519 6422 6.627087 AATCTATCCCAGTGACAGAAAGAA 57.373 37.500 0.00 0.00 0.00 2.52
2581 6493 2.159407 GCTACCTAGTTGTCTCGGTGAC 60.159 54.545 3.34 3.34 45.54 3.67
2699 6611 4.214758 ACGTTACCCTCTGTTTAATGCAAC 59.785 41.667 0.00 0.00 0.00 4.17
2706 6618 5.122396 CCCTCTGTTTAATGCAACACTCTAC 59.878 44.000 0.00 0.00 33.04 2.59
2742 6654 4.162651 TCCTAGAGATGCATGCTGGATAA 58.837 43.478 20.33 0.00 0.00 1.75
2759 6671 3.878103 GGATAACAGTCTCGAGCAGAGTA 59.122 47.826 7.81 0.00 46.86 2.59
2764 6676 4.519213 ACAGTCTCGAGCAGAGTATTAGT 58.481 43.478 7.81 0.00 46.86 2.24
2769 6681 6.768861 AGTCTCGAGCAGAGTATTAGTTGTAT 59.231 38.462 7.81 0.00 46.86 2.29
2889 6801 5.514914 CACAACTGTAATTTGTTCACCACAC 59.485 40.000 0.00 0.00 34.91 3.82
2900 6812 3.244526 TGTTCACCACACAGATGCTATGT 60.245 43.478 0.00 0.00 0.00 2.29
2938 6852 4.621991 CCACTAGTGAAGTTATGGATCCG 58.378 47.826 24.68 0.00 35.76 4.18
2949 6875 5.794894 AGTTATGGATCCGGTCATAATCAC 58.205 41.667 21.07 13.99 37.90 3.06
2978 6904 7.307989 CCTCGATCACTTGTGTTGTTATTCTTT 60.308 37.037 0.46 0.00 0.00 2.52
2979 6905 8.596271 TCGATCACTTGTGTTGTTATTCTTTA 57.404 30.769 0.46 0.00 0.00 1.85
2980 6906 8.492748 TCGATCACTTGTGTTGTTATTCTTTAC 58.507 33.333 0.46 0.00 0.00 2.01
2981 6907 8.279800 CGATCACTTGTGTTGTTATTCTTTACA 58.720 33.333 0.46 0.00 0.00 2.41
2982 6908 9.944663 GATCACTTGTGTTGTTATTCTTTACAA 57.055 29.630 0.46 0.00 32.21 2.41
2984 6910 9.944663 TCACTTGTGTTGTTATTCTTTACAATC 57.055 29.630 0.46 0.00 36.72 2.67
2985 6911 9.950680 CACTTGTGTTGTTATTCTTTACAATCT 57.049 29.630 0.00 0.00 36.72 2.40
2986 6912 9.950680 ACTTGTGTTGTTATTCTTTACAATCTG 57.049 29.630 0.00 0.00 36.72 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 139 5.008980 ACCTGAGACAGTTGTACCTACTAC 58.991 45.833 0.00 0.00 33.19 2.73
167 176 7.878127 CAGACTACTGAAATTTAGAAAGGTGGA 59.122 37.037 0.00 0.00 46.03 4.02
168 177 7.661847 ACAGACTACTGAAATTTAGAAAGGTGG 59.338 37.037 0.00 0.00 46.03 4.61
282 306 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
283 307 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
285 309 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
286 310 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
287 311 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
288 312 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
289 313 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
290 314 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
291 315 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
292 316 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
293 317 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
294 318 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
295 319 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
296 320 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
297 321 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
298 322 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
299 323 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
300 324 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
301 325 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
302 326 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
303 327 3.188254 TGTTCGTTGTACTGCCATGATTG 59.812 43.478 0.00 0.00 0.00 2.67
304 328 3.188460 GTGTTCGTTGTACTGCCATGATT 59.812 43.478 0.00 0.00 0.00 2.57
305 329 2.742053 GTGTTCGTTGTACTGCCATGAT 59.258 45.455 0.00 0.00 0.00 2.45
306 330 2.139917 GTGTTCGTTGTACTGCCATGA 58.860 47.619 0.00 0.00 0.00 3.07
307 331 1.196808 GGTGTTCGTTGTACTGCCATG 59.803 52.381 0.00 0.00 0.00 3.66
308 332 1.202710 TGGTGTTCGTTGTACTGCCAT 60.203 47.619 0.00 0.00 0.00 4.40
309 333 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
310 334 0.865769 CTGGTGTTCGTTGTACTGCC 59.134 55.000 0.00 0.00 0.00 4.85
311 335 1.860676 TCTGGTGTTCGTTGTACTGC 58.139 50.000 0.00 0.00 0.00 4.40
312 336 6.533819 TTATTTCTGGTGTTCGTTGTACTG 57.466 37.500 0.00 0.00 0.00 2.74
313 337 7.556733 TTTTATTTCTGGTGTTCGTTGTACT 57.443 32.000 0.00 0.00 0.00 2.73
314 338 8.791355 ATTTTTATTTCTGGTGTTCGTTGTAC 57.209 30.769 0.00 0.00 0.00 2.90
316 340 9.240159 GTAATTTTTATTTCTGGTGTTCGTTGT 57.760 29.630 0.00 0.00 0.00 3.32
317 341 9.239002 TGTAATTTTTATTTCTGGTGTTCGTTG 57.761 29.630 0.00 0.00 0.00 4.10
318 342 9.974980 ATGTAATTTTTATTTCTGGTGTTCGTT 57.025 25.926 0.00 0.00 0.00 3.85
319 343 9.620660 GATGTAATTTTTATTTCTGGTGTTCGT 57.379 29.630 0.00 0.00 0.00 3.85
320 344 9.072294 GGATGTAATTTTTATTTCTGGTGTTCG 57.928 33.333 0.00 0.00 0.00 3.95
321 345 9.921637 TGGATGTAATTTTTATTTCTGGTGTTC 57.078 29.630 0.00 0.00 0.00 3.18
322 346 9.927668 CTGGATGTAATTTTTATTTCTGGTGTT 57.072 29.630 0.00 0.00 0.00 3.32
323 347 9.308000 TCTGGATGTAATTTTTATTTCTGGTGT 57.692 29.630 0.00 0.00 0.00 4.16
326 350 9.971922 GGATCTGGATGTAATTTTTATTTCTGG 57.028 33.333 0.00 0.00 0.00 3.86
327 351 9.669353 CGGATCTGGATGTAATTTTTATTTCTG 57.331 33.333 0.00 0.00 0.00 3.02
328 352 9.408648 ACGGATCTGGATGTAATTTTTATTTCT 57.591 29.630 6.47 0.00 0.00 2.52
332 356 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
333 357 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
334 358 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
335 359 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
336 360 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
337 361 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
338 362 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
339 363 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
340 364 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
341 365 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
342 366 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
343 367 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
344 368 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
345 369 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
346 370 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
347 371 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
348 372 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
349 373 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
350 374 0.035152 TTCGCTAGGTGGTCTACGGA 60.035 55.000 0.00 0.00 0.00 4.69
351 375 0.381089 CTTCGCTAGGTGGTCTACGG 59.619 60.000 0.00 0.00 0.00 4.02
352 376 1.376543 TCTTCGCTAGGTGGTCTACG 58.623 55.000 0.00 0.00 0.00 3.51
353 377 4.337555 TGTAATCTTCGCTAGGTGGTCTAC 59.662 45.833 0.00 0.00 0.00 2.59
354 378 4.529897 TGTAATCTTCGCTAGGTGGTCTA 58.470 43.478 0.00 0.00 0.00 2.59
355 379 3.362706 TGTAATCTTCGCTAGGTGGTCT 58.637 45.455 0.00 0.00 0.00 3.85
356 380 3.795623 TGTAATCTTCGCTAGGTGGTC 57.204 47.619 0.00 0.00 0.00 4.02
357 381 3.679083 GCTTGTAATCTTCGCTAGGTGGT 60.679 47.826 0.00 0.00 0.00 4.16
358 382 2.866762 GCTTGTAATCTTCGCTAGGTGG 59.133 50.000 0.00 0.00 0.00 4.61
359 383 3.307242 GTGCTTGTAATCTTCGCTAGGTG 59.693 47.826 0.00 0.00 0.00 4.00
360 384 3.522553 GTGCTTGTAATCTTCGCTAGGT 58.477 45.455 0.00 0.00 0.00 3.08
361 385 2.866762 GGTGCTTGTAATCTTCGCTAGG 59.133 50.000 0.00 0.00 0.00 3.02
362 386 2.535984 CGGTGCTTGTAATCTTCGCTAG 59.464 50.000 0.00 0.00 0.00 3.42
363 387 2.164827 TCGGTGCTTGTAATCTTCGCTA 59.835 45.455 0.00 0.00 0.00 4.26
364 388 1.067142 TCGGTGCTTGTAATCTTCGCT 60.067 47.619 0.00 0.00 0.00 4.93
365 389 1.355971 TCGGTGCTTGTAATCTTCGC 58.644 50.000 0.00 0.00 0.00 4.70
366 390 2.222819 GCTTCGGTGCTTGTAATCTTCG 60.223 50.000 0.00 0.00 0.00 3.79
367 391 2.222819 CGCTTCGGTGCTTGTAATCTTC 60.223 50.000 0.00 0.00 0.00 2.87
368 392 1.732259 CGCTTCGGTGCTTGTAATCTT 59.268 47.619 0.00 0.00 0.00 2.40
369 393 1.067142 TCGCTTCGGTGCTTGTAATCT 60.067 47.619 0.00 0.00 0.00 2.40
370 394 1.324736 CTCGCTTCGGTGCTTGTAATC 59.675 52.381 0.00 0.00 0.00 1.75
371 395 1.359848 CTCGCTTCGGTGCTTGTAAT 58.640 50.000 0.00 0.00 0.00 1.89
372 396 1.289109 GCTCGCTTCGGTGCTTGTAA 61.289 55.000 0.00 0.00 0.00 2.41
373 397 1.736645 GCTCGCTTCGGTGCTTGTA 60.737 57.895 0.00 0.00 0.00 2.41
374 398 3.044305 GCTCGCTTCGGTGCTTGT 61.044 61.111 0.00 0.00 0.00 3.16
375 399 3.793144 GGCTCGCTTCGGTGCTTG 61.793 66.667 0.00 0.00 0.00 4.01
379 403 3.181967 CTTCGGCTCGCTTCGGTG 61.182 66.667 0.00 0.00 0.00 4.94
380 404 4.436998 CCTTCGGCTCGCTTCGGT 62.437 66.667 0.00 0.00 0.00 4.69
405 429 4.096003 ATGGAGGGGCGTTGACGG 62.096 66.667 5.62 0.00 40.23 4.79
406 430 2.511600 GATGGAGGGGCGTTGACG 60.512 66.667 0.00 0.00 43.27 4.35
407 431 1.745489 GTGATGGAGGGGCGTTGAC 60.745 63.158 0.00 0.00 0.00 3.18
408 432 2.668632 GTGATGGAGGGGCGTTGA 59.331 61.111 0.00 0.00 0.00 3.18
409 433 2.438434 GGTGATGGAGGGGCGTTG 60.438 66.667 0.00 0.00 0.00 4.10
410 434 4.096003 CGGTGATGGAGGGGCGTT 62.096 66.667 0.00 0.00 0.00 4.84
418 442 3.083349 CCTGGCTCCGGTGATGGA 61.083 66.667 7.92 0.00 36.37 3.41
419 443 4.864334 GCCTGGCTCCGGTGATGG 62.864 72.222 12.43 6.61 0.00 3.51
420 444 4.100084 TGCCTGGCTCCGGTGATG 62.100 66.667 21.03 0.00 0.00 3.07
421 445 4.101448 GTGCCTGGCTCCGGTGAT 62.101 66.667 21.03 0.00 0.00 3.06
423 447 4.641645 TTGTGCCTGGCTCCGGTG 62.642 66.667 21.03 0.00 0.00 4.94
424 448 4.643387 GTTGTGCCTGGCTCCGGT 62.643 66.667 21.03 0.00 0.00 5.28
425 449 3.850098 AAGTTGTGCCTGGCTCCGG 62.850 63.158 21.03 0.00 0.00 5.14
426 450 2.281761 AAGTTGTGCCTGGCTCCG 60.282 61.111 21.03 0.00 0.00 4.63
427 451 1.109323 AACAAGTTGTGCCTGGCTCC 61.109 55.000 21.03 10.95 0.00 4.70
428 452 0.031178 CAACAAGTTGTGCCTGGCTC 59.969 55.000 21.03 17.16 35.92 4.70
429 453 2.118132 CAACAAGTTGTGCCTGGCT 58.882 52.632 21.03 0.00 35.92 4.75
430 454 4.736165 CAACAAGTTGTGCCTGGC 57.264 55.556 12.87 12.87 35.92 4.85
438 462 5.872617 TCCGACCATCTATTACAACAAGTTG 59.127 40.000 11.16 11.16 45.58 3.16
439 463 6.045072 TCCGACCATCTATTACAACAAGTT 57.955 37.500 0.00 0.00 0.00 2.66
440 464 5.670792 TCCGACCATCTATTACAACAAGT 57.329 39.130 0.00 0.00 0.00 3.16
441 465 6.978343 TTTCCGACCATCTATTACAACAAG 57.022 37.500 0.00 0.00 0.00 3.16
442 466 7.931578 ATTTTCCGACCATCTATTACAACAA 57.068 32.000 0.00 0.00 0.00 2.83
443 467 7.392113 ACAATTTTCCGACCATCTATTACAACA 59.608 33.333 0.00 0.00 0.00 3.33
444 468 7.758495 ACAATTTTCCGACCATCTATTACAAC 58.242 34.615 0.00 0.00 0.00 3.32
445 469 7.201574 CGACAATTTTCCGACCATCTATTACAA 60.202 37.037 0.00 0.00 0.00 2.41
446 470 6.256975 CGACAATTTTCCGACCATCTATTACA 59.743 38.462 0.00 0.00 0.00 2.41
447 471 6.257193 ACGACAATTTTCCGACCATCTATTAC 59.743 38.462 0.00 0.00 0.00 1.89
448 472 6.256975 CACGACAATTTTCCGACCATCTATTA 59.743 38.462 0.00 0.00 0.00 0.98
449 473 5.064707 CACGACAATTTTCCGACCATCTATT 59.935 40.000 0.00 0.00 0.00 1.73
450 474 4.570772 CACGACAATTTTCCGACCATCTAT 59.429 41.667 0.00 0.00 0.00 1.98
451 475 3.930229 CACGACAATTTTCCGACCATCTA 59.070 43.478 0.00 0.00 0.00 1.98
452 476 2.742053 CACGACAATTTTCCGACCATCT 59.258 45.455 0.00 0.00 0.00 2.90
453 477 2.727916 GCACGACAATTTTCCGACCATC 60.728 50.000 0.00 0.00 0.00 3.51
454 478 1.199097 GCACGACAATTTTCCGACCAT 59.801 47.619 0.00 0.00 0.00 3.55
455 479 0.589223 GCACGACAATTTTCCGACCA 59.411 50.000 0.00 0.00 0.00 4.02
456 480 0.872388 AGCACGACAATTTTCCGACC 59.128 50.000 0.00 0.00 0.00 4.79
457 481 3.424433 CCTTAGCACGACAATTTTCCGAC 60.424 47.826 0.00 0.00 0.00 4.79
458 482 2.739913 CCTTAGCACGACAATTTTCCGA 59.260 45.455 0.00 0.00 0.00 4.55
459 483 2.727916 GCCTTAGCACGACAATTTTCCG 60.728 50.000 0.00 0.00 39.53 4.30
460 484 2.415491 GGCCTTAGCACGACAATTTTCC 60.415 50.000 0.00 0.00 42.56 3.13
461 485 2.415491 GGGCCTTAGCACGACAATTTTC 60.415 50.000 0.84 0.00 42.56 2.29
462 486 1.544246 GGGCCTTAGCACGACAATTTT 59.456 47.619 0.84 0.00 42.56 1.82
463 487 1.173913 GGGCCTTAGCACGACAATTT 58.826 50.000 0.84 0.00 42.56 1.82
464 488 0.679960 GGGGCCTTAGCACGACAATT 60.680 55.000 0.84 0.00 46.55 2.32
465 489 1.077716 GGGGCCTTAGCACGACAAT 60.078 57.895 0.84 0.00 46.55 2.71
466 490 1.847798 ATGGGGCCTTAGCACGACAA 61.848 55.000 0.84 0.00 46.55 3.18
467 491 0.978667 TATGGGGCCTTAGCACGACA 60.979 55.000 0.84 0.00 46.55 4.35
468 492 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
469 493 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
470 494 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
471 495 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
472 496 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
479 503 3.890926 GGGCTGGTCCTATGGGGC 61.891 72.222 0.00 0.00 36.26 5.80
480 504 3.178611 GGGGCTGGTCCTATGGGG 61.179 72.222 0.00 0.00 34.39 4.96
481 505 3.178611 GGGGGCTGGTCCTATGGG 61.179 72.222 0.00 0.00 34.39 4.00
495 519 2.672996 CGGTTGCTGTTCTGGGGG 60.673 66.667 0.00 0.00 0.00 5.40
496 520 3.365265 GCGGTTGCTGTTCTGGGG 61.365 66.667 0.00 0.00 38.39 4.96
497 521 3.365265 GGCGGTTGCTGTTCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
498 522 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
505 529 3.583276 TTCATCGACGGCGGTTGCT 62.583 57.895 12.58 0.00 42.25 3.91
506 530 2.177654 TTTTCATCGACGGCGGTTGC 62.178 55.000 12.58 0.00 41.71 4.17
507 531 0.236187 TTTTTCATCGACGGCGGTTG 59.764 50.000 12.58 9.82 38.28 3.77
508 532 1.161843 ATTTTTCATCGACGGCGGTT 58.838 45.000 12.58 0.00 38.28 4.44
509 533 2.012937 TATTTTTCATCGACGGCGGT 57.987 45.000 12.58 0.00 38.28 5.68
510 534 2.700694 GTTATTTTTCATCGACGGCGG 58.299 47.619 12.58 0.00 38.28 6.13
511 535 2.222640 ACGTTATTTTTCATCGACGGCG 60.223 45.455 2.87 2.87 35.06 6.46
512 536 3.378959 ACGTTATTTTTCATCGACGGC 57.621 42.857 0.00 0.00 35.06 5.68
513 537 5.937165 TCTACGTTATTTTTCATCGACGG 57.063 39.130 0.00 0.00 35.06 4.79
514 538 6.272317 CGATCTACGTTATTTTTCATCGACG 58.728 40.000 0.00 0.00 35.08 5.12
515 539 6.415867 TCCGATCTACGTTATTTTTCATCGAC 59.584 38.462 0.00 0.00 40.78 4.20
516 540 6.497437 TCCGATCTACGTTATTTTTCATCGA 58.503 36.000 0.00 0.00 40.78 3.59
517 541 6.742999 TCCGATCTACGTTATTTTTCATCG 57.257 37.500 0.00 0.00 40.78 3.84
518 542 7.437267 TCCTTCCGATCTACGTTATTTTTCATC 59.563 37.037 0.00 0.00 40.78 2.92
519 543 7.270047 TCCTTCCGATCTACGTTATTTTTCAT 58.730 34.615 0.00 0.00 40.78 2.57
520 544 6.632909 TCCTTCCGATCTACGTTATTTTTCA 58.367 36.000 0.00 0.00 40.78 2.69
521 545 7.095732 GGATCCTTCCGATCTACGTTATTTTTC 60.096 40.741 3.84 0.00 45.90 2.29
522 546 6.704937 GGATCCTTCCGATCTACGTTATTTTT 59.295 38.462 3.84 0.00 45.90 1.94
523 547 6.183360 TGGATCCTTCCGATCTACGTTATTTT 60.183 38.462 14.23 0.00 45.90 1.82
524 548 5.303589 TGGATCCTTCCGATCTACGTTATTT 59.696 40.000 14.23 0.00 45.90 1.40
525 549 4.831155 TGGATCCTTCCGATCTACGTTATT 59.169 41.667 14.23 0.00 45.90 1.40
526 550 4.404640 TGGATCCTTCCGATCTACGTTAT 58.595 43.478 14.23 0.00 45.90 1.89
527 551 3.824133 TGGATCCTTCCGATCTACGTTA 58.176 45.455 14.23 0.00 45.90 3.18
528 552 2.662866 TGGATCCTTCCGATCTACGTT 58.337 47.619 14.23 0.00 45.90 3.99
529 553 2.359981 TGGATCCTTCCGATCTACGT 57.640 50.000 14.23 0.00 45.90 3.57
530 554 3.381949 GTTTGGATCCTTCCGATCTACG 58.618 50.000 14.23 0.00 45.90 3.51
531 555 3.729966 GGTTTGGATCCTTCCGATCTAC 58.270 50.000 14.23 0.00 45.90 2.59
532 556 2.364324 CGGTTTGGATCCTTCCGATCTA 59.636 50.000 26.55 0.00 45.90 1.98
533 557 1.139058 CGGTTTGGATCCTTCCGATCT 59.861 52.381 26.55 0.00 45.90 2.75
534 558 1.138266 TCGGTTTGGATCCTTCCGATC 59.862 52.381 28.02 9.18 45.89 3.69
535 559 1.200519 TCGGTTTGGATCCTTCCGAT 58.799 50.000 28.02 0.00 45.89 4.18
536 560 0.978151 TTCGGTTTGGATCCTTCCGA 59.022 50.000 28.02 28.02 45.89 4.55
537 561 1.816074 TTTCGGTTTGGATCCTTCCG 58.184 50.000 25.49 25.49 45.89 4.30
538 562 2.888414 TGTTTTCGGTTTGGATCCTTCC 59.112 45.455 14.23 11.29 42.94 3.46
539 563 3.316868 TGTGTTTTCGGTTTGGATCCTTC 59.683 43.478 14.23 3.17 0.00 3.46
540 564 3.067601 GTGTGTTTTCGGTTTGGATCCTT 59.932 43.478 14.23 0.00 0.00 3.36
541 565 2.621526 GTGTGTTTTCGGTTTGGATCCT 59.378 45.455 14.23 0.00 0.00 3.24
542 566 2.603652 CGTGTGTTTTCGGTTTGGATCC 60.604 50.000 4.20 4.20 0.00 3.36
543 567 2.288458 TCGTGTGTTTTCGGTTTGGATC 59.712 45.455 0.00 0.00 0.00 3.36
544 568 2.290464 TCGTGTGTTTTCGGTTTGGAT 58.710 42.857 0.00 0.00 0.00 3.41
545 569 1.735386 TCGTGTGTTTTCGGTTTGGA 58.265 45.000 0.00 0.00 0.00 3.53
546 570 2.178783 GTTCGTGTGTTTTCGGTTTGG 58.821 47.619 0.00 0.00 0.00 3.28
547 571 1.835365 CGTTCGTGTGTTTTCGGTTTG 59.165 47.619 0.00 0.00 0.00 2.93
548 572 1.464219 ACGTTCGTGTGTTTTCGGTTT 59.536 42.857 0.00 0.00 0.00 3.27
549 573 1.077915 ACGTTCGTGTGTTTTCGGTT 58.922 45.000 0.00 0.00 0.00 4.44
550 574 1.854126 CTACGTTCGTGTGTTTTCGGT 59.146 47.619 8.14 0.00 0.00 4.69
551 575 2.097733 GTCTACGTTCGTGTGTTTTCGG 60.098 50.000 8.14 0.00 0.00 4.30
552 576 2.406368 CGTCTACGTTCGTGTGTTTTCG 60.406 50.000 8.14 0.00 34.11 3.46
553 577 2.783284 TCGTCTACGTTCGTGTGTTTTC 59.217 45.455 8.14 0.00 40.80 2.29
554 578 2.796304 TCGTCTACGTTCGTGTGTTTT 58.204 42.857 8.14 0.00 40.80 2.43
555 579 2.473530 TCGTCTACGTTCGTGTGTTT 57.526 45.000 8.14 0.00 40.80 2.83
556 580 2.111756 GTTCGTCTACGTTCGTGTGTT 58.888 47.619 8.14 0.00 40.80 3.32
557 581 1.063912 TGTTCGTCTACGTTCGTGTGT 59.936 47.619 8.14 0.00 40.80 3.72
558 582 1.745566 TGTTCGTCTACGTTCGTGTG 58.254 50.000 8.14 1.60 40.80 3.82
559 583 2.111756 GTTGTTCGTCTACGTTCGTGT 58.888 47.619 8.14 0.00 40.80 4.49
560 584 1.119497 CGTTGTTCGTCTACGTTCGTG 59.881 52.381 8.14 0.00 39.58 4.35
561 585 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
562 586 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
563 587 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
564 588 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
565 589 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
566 590 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
567 591 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
568 592 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
569 593 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
570 594 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
571 595 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
572 596 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
573 597 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
574 598 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
575 599 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
576 600 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
577 601 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
578 602 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
579 603 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
580 604 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
581 605 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
582 606 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
583 607 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
584 608 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
585 609 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
586 610 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
587 611 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
588 612 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
589 613 6.038161 TGTTATATCTTTGGTGGATTTGCTCG 59.962 38.462 0.00 0.00 0.00 5.03
590 614 7.333528 TGTTATATCTTTGGTGGATTTGCTC 57.666 36.000 0.00 0.00 0.00 4.26
591 615 7.178274 TGTTGTTATATCTTTGGTGGATTTGCT 59.822 33.333 0.00 0.00 0.00 3.91
592 616 7.319646 TGTTGTTATATCTTTGGTGGATTTGC 58.680 34.615 0.00 0.00 0.00 3.68
596 620 9.784531 CTCTATGTTGTTATATCTTTGGTGGAT 57.215 33.333 0.00 0.00 0.00 3.41
597 621 8.768397 ACTCTATGTTGTTATATCTTTGGTGGA 58.232 33.333 0.00 0.00 0.00 4.02
598 622 8.964476 ACTCTATGTTGTTATATCTTTGGTGG 57.036 34.615 0.00 0.00 0.00 4.61
664 691 3.374988 TCGATGATCCAATTCTTGTGTGC 59.625 43.478 0.00 0.00 0.00 4.57
729 757 5.850278 TCCCCTGGATAGAGAAGAAGTAAA 58.150 41.667 0.00 0.00 0.00 2.01
730 758 5.195960 TCTCCCCTGGATAGAGAAGAAGTAA 59.804 44.000 0.00 0.00 33.80 2.24
731 759 4.732443 TCTCCCCTGGATAGAGAAGAAGTA 59.268 45.833 0.00 0.00 33.80 2.24
732 760 3.533907 TCTCCCCTGGATAGAGAAGAAGT 59.466 47.826 0.00 0.00 33.80 3.01
770 804 3.367395 GCTTCCCAGAAATGCCACTAAAC 60.367 47.826 0.00 0.00 0.00 2.01
771 805 2.825532 GCTTCCCAGAAATGCCACTAAA 59.174 45.455 0.00 0.00 0.00 1.85
772 806 2.224992 TGCTTCCCAGAAATGCCACTAA 60.225 45.455 0.00 0.00 0.00 2.24
778 2226 1.244019 ACGGTGCTTCCCAGAAATGC 61.244 55.000 0.00 0.00 0.00 3.56
878 4059 7.504924 TTTCTGTTGGTGTTTATCTGGTAAG 57.495 36.000 0.00 0.00 0.00 2.34
888 4069 4.099419 GGGAAGTGATTTCTGTTGGTGTTT 59.901 41.667 0.00 0.00 36.03 2.83
919 4419 2.500098 TCGGATCGAATGGGAAGTCTTT 59.500 45.455 0.00 0.00 31.06 2.52
964 4478 4.925054 TGAACAACTAATAAACCGGTCGAG 59.075 41.667 8.04 3.46 0.00 4.04
1159 4689 1.010419 CCTTCTTGTTTGGCATGCGC 61.010 55.000 12.44 0.00 37.44 6.09
2001 5534 1.436600 GCAGGCATCGATCTATGGTG 58.563 55.000 9.10 0.00 0.00 4.17
2021 5554 3.316573 GACTGGGCGGAAGGACTGG 62.317 68.421 0.00 0.00 0.00 4.00
2033 5566 3.625897 TGACAGCGGTGGACTGGG 61.626 66.667 20.20 0.00 39.55 4.45
2034 5567 2.357517 GTGACAGCGGTGGACTGG 60.358 66.667 20.20 0.00 39.55 4.00
2035 5568 1.532604 TAGGTGACAGCGGTGGACTG 61.533 60.000 20.20 2.22 41.08 3.51
2036 5569 1.228769 TAGGTGACAGCGGTGGACT 60.229 57.895 20.20 12.79 0.00 3.85
2037 5570 1.080025 GTAGGTGACAGCGGTGGAC 60.080 63.158 20.20 14.35 0.00 4.02
2038 5571 0.038599 TAGTAGGTGACAGCGGTGGA 59.961 55.000 20.20 1.60 0.00 4.02
2039 5572 0.172803 GTAGTAGGTGACAGCGGTGG 59.827 60.000 20.20 0.80 0.00 4.61
2040 5573 0.172803 GGTAGTAGGTGACAGCGGTG 59.827 60.000 14.13 14.13 0.00 4.94
2131 5696 5.723672 TTGGGTACAAAGTGACACAAAAA 57.276 34.783 8.59 0.00 36.06 1.94
2165 5731 5.149973 TGTACAAGAATTACCGGCTTACA 57.850 39.130 0.00 0.00 0.00 2.41
2261 6152 7.166804 GCATATTGCACGTCCGTTAAAAATATT 59.833 33.333 0.00 0.00 44.26 1.28
2365 6257 3.426787 TCAACAACCCGTCAATATGGT 57.573 42.857 0.00 0.00 0.00 3.55
2366 6258 6.443934 TTTATCAACAACCCGTCAATATGG 57.556 37.500 0.00 0.00 0.00 2.74
2504 6407 6.874288 AGATTTCTTTCTTTCTGTCACTGG 57.126 37.500 0.00 0.00 0.00 4.00
2540 6448 7.565398 AGGTAGCTATCTTTTCATCCTTAGTGA 59.435 37.037 0.00 0.00 0.00 3.41
2555 6467 4.391155 CCGAGACAACTAGGTAGCTATCT 58.609 47.826 12.11 12.11 34.84 1.98
2581 6493 8.361139 ACAATATATTCTCTTACCTCCAACTCG 58.639 37.037 0.00 0.00 0.00 4.18
2683 6595 5.934625 AGTAGAGTGTTGCATTAAACAGAGG 59.065 40.000 0.00 0.00 40.60 3.69
2742 6654 4.519213 ACTAATACTCTGCTCGAGACTGT 58.481 43.478 18.75 10.93 42.62 3.55
2745 6657 5.238006 ACAACTAATACTCTGCTCGAGAC 57.762 43.478 18.75 8.32 42.62 3.36
2949 6875 1.721389 CAACACAAGTGATCGAGGTCG 59.279 52.381 7.28 0.00 41.45 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.