Multiple sequence alignment - TraesCS2D01G434800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G434800 chr2D 100.000 5856 0 0 1 5856 545863217 545857362 0.000000e+00 10815.0
1 TraesCS2D01G434800 chr2D 85.832 607 65 10 144 731 539155518 539154914 4.980000e-175 625.0
2 TraesCS2D01G434800 chr2D 85.526 608 63 13 141 729 176587092 176587693 3.880000e-171 612.0
3 TraesCS2D01G434800 chr2D 91.477 352 22 4 3178 3525 545859965 545859618 1.480000e-130 477.0
4 TraesCS2D01G434800 chr2D 91.477 352 22 4 3253 3600 545860040 545859693 1.480000e-130 477.0
5 TraesCS2D01G434800 chr2D 89.474 285 22 4 3167 3447 545859898 545859618 2.600000e-93 353.0
6 TraesCS2D01G434800 chr2D 89.474 285 22 4 3320 3600 545860051 545859771 2.600000e-93 353.0
7 TraesCS2D01G434800 chr2D 95.833 144 6 0 1 144 445008020 445007877 3.530000e-57 233.0
8 TraesCS2D01G434800 chr2D 85.024 207 23 4 3167 3369 545859820 545859618 2.770000e-48 204.0
9 TraesCS2D01G434800 chr2D 85.024 207 23 4 3398 3600 545860051 545859849 2.770000e-48 204.0
10 TraesCS2D01G434800 chr2D 84.921 126 17 2 3167 3291 545859742 545859618 6.160000e-25 126.0
11 TraesCS2D01G434800 chr2D 84.921 126 17 2 3476 3600 545860051 545859927 6.160000e-25 126.0
12 TraesCS2D01G434800 chr2D 78.740 127 16 5 5014 5134 27783731 27783610 2.260000e-09 75.0
13 TraesCS2D01G434800 chr2B 92.842 2878 149 27 2217 5065 652574623 652571774 0.000000e+00 4120.0
14 TraesCS2D01G434800 chr2B 90.842 808 35 13 1426 2217 652575459 652574675 0.000000e+00 1046.0
15 TraesCS2D01G434800 chr2B 90.042 713 35 17 737 1427 652576198 652575500 0.000000e+00 891.0
16 TraesCS2D01G434800 chr2B 87.149 677 64 12 5189 5856 652569557 652568895 0.000000e+00 747.0
17 TraesCS2D01G434800 chr2B 89.112 349 27 5 3253 3600 652573671 652573333 1.950000e-114 424.0
18 TraesCS2D01G434800 chr2B 88.333 360 31 5 3167 3525 652573607 652573258 7.020000e-114 422.0
19 TraesCS2D01G434800 chr2B 86.879 282 29 4 3320 3600 652573682 652573408 5.700000e-80 309.0
20 TraesCS2D01G434800 chr2B 86.170 282 31 4 3167 3447 652573532 652573258 1.230000e-76 298.0
21 TraesCS2D01G434800 chr2B 86.408 206 23 3 3165 3369 652573459 652573258 2.750000e-53 220.0
22 TraesCS2D01G434800 chr2B 85.784 204 24 3 3398 3600 652573682 652573483 1.650000e-50 211.0
23 TraesCS2D01G434800 chr2A 87.368 2755 181 81 734 3399 689192278 689194954 0.000000e+00 3005.0
24 TraesCS2D01G434800 chr2A 94.843 1493 59 8 3476 4950 689195242 689196734 0.000000e+00 2314.0
25 TraesCS2D01G434800 chr2A 95.862 145 6 0 1 145 597574133 597574277 9.810000e-58 235.0
26 TraesCS2D01G434800 chr2A 86.275 204 23 3 3398 3600 689194725 689194924 3.550000e-52 217.0
27 TraesCS2D01G434800 chr2A 93.478 138 8 1 5719 5856 689197726 689197862 2.770000e-48 204.0
28 TraesCS2D01G434800 chr2A 82.906 234 17 5 501 732 752030014 752029802 7.750000e-44 189.0
29 TraesCS2D01G434800 chr2A 93.860 114 7 0 5554 5667 689197610 689197723 7.800000e-39 172.0
30 TraesCS2D01G434800 chr5D 88.442 597 56 10 144 731 63105250 63104658 0.000000e+00 708.0
31 TraesCS2D01G434800 chr5D 84.262 610 72 8 141 729 512221198 512221804 1.830000e-159 573.0
32 TraesCS2D01G434800 chr5D 87.963 324 24 4 419 729 438335908 438335587 9.270000e-98 368.0
33 TraesCS2D01G434800 chr5D 86.992 123 10 5 615 734 499061029 499060910 3.680000e-27 134.0
34 TraesCS2D01G434800 chr5D 94.286 35 2 0 5189 5223 526122196 526122230 3.000000e-03 54.7
35 TraesCS2D01G434800 chr6D 87.849 609 52 10 141 729 47079151 47079757 0.000000e+00 695.0
36 TraesCS2D01G434800 chr6D 95.139 144 7 0 1 144 325376895 325376752 1.640000e-55 228.0
37 TraesCS2D01G434800 chr6D 95.139 144 7 0 1 144 378997324 378997181 1.640000e-55 228.0
38 TraesCS2D01G434800 chr3A 87.541 610 52 6 141 729 158165739 158166345 0.000000e+00 684.0
39 TraesCS2D01G434800 chr3A 86.270 437 37 7 314 729 26047234 26046800 2.490000e-123 453.0
40 TraesCS2D01G434800 chr1D 87.965 565 60 6 141 699 405279855 405280417 0.000000e+00 660.0
41 TraesCS2D01G434800 chr1D 93.333 45 3 0 5181 5225 336373963 336373919 3.790000e-07 67.6
42 TraesCS2D01G434800 chr3D 87.145 599 44 11 141 729 90772045 90772620 0.000000e+00 649.0
43 TraesCS2D01G434800 chr3D 97.222 144 4 0 1 144 269316946 269317089 1.630000e-60 244.0
44 TraesCS2D01G434800 chr3D 95.804 143 6 0 1 143 112807858 112808000 1.270000e-56 231.0
45 TraesCS2D01G434800 chr3D 100.000 29 0 0 5828 5856 565397551 565397579 3.000000e-03 54.7
46 TraesCS2D01G434800 chr5A 87.900 562 50 5 149 707 677165872 677165326 0.000000e+00 645.0
47 TraesCS2D01G434800 chr7D 87.124 598 39 16 141 729 92138221 92138789 1.380000e-180 643.0
48 TraesCS2D01G434800 chr7D 95.139 144 6 1 1 143 117745602 117745745 5.900000e-55 226.0
49 TraesCS2D01G434800 chr7D 95.000 40 2 0 5177 5216 411305619 411305580 4.900000e-06 63.9
50 TraesCS2D01G434800 chr4A 86.757 589 60 6 144 732 595215907 595215337 1.780000e-179 640.0
51 TraesCS2D01G434800 chr4A 91.293 379 33 0 144 522 32679985 32679607 8.700000e-143 518.0
52 TraesCS2D01G434800 chr4A 90.517 232 18 3 501 729 626061934 626061704 2.650000e-78 303.0
53 TraesCS2D01G434800 chr7A 86.265 597 54 6 141 729 80566947 80567523 1.790000e-174 623.0
54 TraesCS2D01G434800 chr7A 84.551 602 53 8 144 735 696016567 696015996 1.430000e-155 560.0
55 TraesCS2D01G434800 chr7A 91.441 222 16 3 513 732 149851053 149850833 9.540000e-78 302.0
56 TraesCS2D01G434800 chr3B 83.582 603 81 13 141 729 743807752 743808350 3.080000e-152 549.0
57 TraesCS2D01G434800 chr3B 100.000 29 0 0 5828 5856 752669008 752668980 3.000000e-03 54.7
58 TraesCS2D01G434800 chr4D 89.286 196 16 2 539 733 471960123 471960314 2.110000e-59 241.0
59 TraesCS2D01G434800 chr4D 88.119 202 19 3 534 733 140902172 140901974 9.810000e-58 235.0
60 TraesCS2D01G434800 chr4D 95.833 144 6 0 1 144 290665179 290665036 3.530000e-57 233.0
61 TraesCS2D01G434800 chr4D 95.139 144 7 0 1 144 341600242 341600099 1.640000e-55 228.0
62 TraesCS2D01G434800 chr1B 93.333 45 3 0 5181 5225 452304147 452304103 3.790000e-07 67.6
63 TraesCS2D01G434800 chr1B 93.182 44 3 0 5181 5224 133158014 133157971 1.360000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G434800 chr2D 545857362 545863217 5855 True 1459.444444 10815 89.0880 1 5856 9 chr2D.!!$R4 5855
1 TraesCS2D01G434800 chr2D 539154914 539155518 604 True 625.000000 625 85.8320 144 731 1 chr2D.!!$R3 587
2 TraesCS2D01G434800 chr2D 176587092 176587693 601 False 612.000000 612 85.5260 141 729 1 chr2D.!!$F1 588
3 TraesCS2D01G434800 chr2B 652568895 652576198 7303 True 868.800000 4120 88.3561 737 5856 10 chr2B.!!$R1 5119
4 TraesCS2D01G434800 chr2A 689192278 689197862 5584 False 1182.400000 3005 91.1648 734 5856 5 chr2A.!!$F2 5122
5 TraesCS2D01G434800 chr5D 63104658 63105250 592 True 708.000000 708 88.4420 144 731 1 chr5D.!!$R1 587
6 TraesCS2D01G434800 chr5D 512221198 512221804 606 False 573.000000 573 84.2620 141 729 1 chr5D.!!$F1 588
7 TraesCS2D01G434800 chr6D 47079151 47079757 606 False 695.000000 695 87.8490 141 729 1 chr6D.!!$F1 588
8 TraesCS2D01G434800 chr3A 158165739 158166345 606 False 684.000000 684 87.5410 141 729 1 chr3A.!!$F1 588
9 TraesCS2D01G434800 chr1D 405279855 405280417 562 False 660.000000 660 87.9650 141 699 1 chr1D.!!$F1 558
10 TraesCS2D01G434800 chr3D 90772045 90772620 575 False 649.000000 649 87.1450 141 729 1 chr3D.!!$F1 588
11 TraesCS2D01G434800 chr5A 677165326 677165872 546 True 645.000000 645 87.9000 149 707 1 chr5A.!!$R1 558
12 TraesCS2D01G434800 chr7D 92138221 92138789 568 False 643.000000 643 87.1240 141 729 1 chr7D.!!$F1 588
13 TraesCS2D01G434800 chr4A 595215337 595215907 570 True 640.000000 640 86.7570 144 732 1 chr4A.!!$R2 588
14 TraesCS2D01G434800 chr7A 80566947 80567523 576 False 623.000000 623 86.2650 141 729 1 chr7A.!!$F1 588
15 TraesCS2D01G434800 chr7A 696015996 696016567 571 True 560.000000 560 84.5510 144 735 1 chr7A.!!$R2 591
16 TraesCS2D01G434800 chr3B 743807752 743808350 598 False 549.000000 549 83.5820 141 729 1 chr3B.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.106419 TTTGTCTTCAAAGCCCCCGT 60.106 50.000 0.00 0.0 38.44 5.28 F
89 90 0.106419 AAGCCCCCGTGTTTTGAAGA 60.106 50.000 0.00 0.0 0.00 2.87 F
879 999 0.108281 GTAACTCTCCAGCGGGGTTC 60.108 60.000 2.05 0.0 38.11 3.62 F
880 1000 0.252103 TAACTCTCCAGCGGGGTTCT 60.252 55.000 2.05 0.0 38.11 3.01 F
2309 2576 0.320374 TAGTCAGGGCCTTTGTCACG 59.680 55.000 1.32 0.0 0.00 4.35 F
2496 2764 0.250338 GAGGACCAAGCGACAACCTT 60.250 55.000 0.00 0.0 0.00 3.50 F
3429 3776 1.374252 CCTCCAACCGTTCGTCCAG 60.374 63.158 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1098 1225 0.327259 CCTCCATGCATCGGATGGAT 59.673 55.000 17.93 17.93 46.65 3.41 R
1806 2010 0.524862 CAGCAGCTCATTTTTCCGCT 59.475 50.000 0.00 0.00 0.00 5.52 R
2290 2557 0.320374 CGTGACAAAGGCCCTGACTA 59.680 55.000 9.39 0.00 0.00 2.59 R
2484 2752 0.468226 TCTGGTCAAGGTTGTCGCTT 59.532 50.000 0.00 0.00 0.00 4.68 R
3411 3758 1.374252 CTGGACGAACGGTTGGAGG 60.374 63.158 9.95 0.00 0.00 4.30 R
4330 4891 1.144057 CATTCGTAGCCGCCCTTCT 59.856 57.895 0.00 0.00 0.00 2.85 R
5376 8737 0.036952 TTGGAGAGAAGAAGGCAGCG 60.037 55.000 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.838531 ACTATGGCTTGTCTAGTGTAGTC 57.161 43.478 0.00 0.00 0.00 2.59
23 24 5.511363 ACTATGGCTTGTCTAGTGTAGTCT 58.489 41.667 0.00 0.00 0.00 3.24
24 25 6.660800 ACTATGGCTTGTCTAGTGTAGTCTA 58.339 40.000 0.00 0.00 0.00 2.59
25 26 5.838531 ATGGCTTGTCTAGTGTAGTCTAC 57.161 43.478 2.81 2.81 0.00 2.59
26 27 4.015084 TGGCTTGTCTAGTGTAGTCTACC 58.985 47.826 7.56 0.00 0.00 3.18
27 28 4.263816 TGGCTTGTCTAGTGTAGTCTACCT 60.264 45.833 7.56 6.85 0.00 3.08
28 29 4.705991 GGCTTGTCTAGTGTAGTCTACCTT 59.294 45.833 7.56 0.00 0.00 3.50
29 30 5.163632 GGCTTGTCTAGTGTAGTCTACCTTC 60.164 48.000 7.56 0.00 0.00 3.46
30 31 5.163632 GCTTGTCTAGTGTAGTCTACCTTCC 60.164 48.000 7.56 0.00 0.00 3.46
31 32 4.511527 TGTCTAGTGTAGTCTACCTTCCG 58.488 47.826 7.56 0.00 0.00 4.30
32 33 3.312146 GTCTAGTGTAGTCTACCTTCCGC 59.688 52.174 7.56 0.00 0.00 5.54
33 34 2.510928 AGTGTAGTCTACCTTCCGCT 57.489 50.000 7.56 0.00 0.00 5.52
34 35 2.093106 AGTGTAGTCTACCTTCCGCTG 58.907 52.381 7.56 0.00 0.00 5.18
35 36 0.815734 TGTAGTCTACCTTCCGCTGC 59.184 55.000 7.56 0.00 0.00 5.25
36 37 0.815734 GTAGTCTACCTTCCGCTGCA 59.184 55.000 0.00 0.00 0.00 4.41
37 38 1.409427 GTAGTCTACCTTCCGCTGCAT 59.591 52.381 0.00 0.00 0.00 3.96
38 39 1.776662 AGTCTACCTTCCGCTGCATA 58.223 50.000 0.00 0.00 0.00 3.14
39 40 2.320781 AGTCTACCTTCCGCTGCATAT 58.679 47.619 0.00 0.00 0.00 1.78
40 41 2.297597 AGTCTACCTTCCGCTGCATATC 59.702 50.000 0.00 0.00 0.00 1.63
41 42 2.035961 GTCTACCTTCCGCTGCATATCA 59.964 50.000 0.00 0.00 0.00 2.15
42 43 2.698274 TCTACCTTCCGCTGCATATCAA 59.302 45.455 0.00 0.00 0.00 2.57
43 44 2.645838 ACCTTCCGCTGCATATCAAT 57.354 45.000 0.00 0.00 0.00 2.57
44 45 3.769739 ACCTTCCGCTGCATATCAATA 57.230 42.857 0.00 0.00 0.00 1.90
45 46 3.668447 ACCTTCCGCTGCATATCAATAG 58.332 45.455 0.00 0.00 0.00 1.73
46 47 3.005554 CCTTCCGCTGCATATCAATAGG 58.994 50.000 0.00 0.00 0.00 2.57
47 48 3.557898 CCTTCCGCTGCATATCAATAGGT 60.558 47.826 0.00 0.00 0.00 3.08
48 49 3.044235 TCCGCTGCATATCAATAGGTG 57.956 47.619 0.00 0.00 0.00 4.00
49 50 2.368548 TCCGCTGCATATCAATAGGTGT 59.631 45.455 0.00 0.00 0.00 4.16
50 51 3.576550 TCCGCTGCATATCAATAGGTGTA 59.423 43.478 0.00 0.00 0.00 2.90
51 52 4.222810 TCCGCTGCATATCAATAGGTGTAT 59.777 41.667 0.00 0.00 0.00 2.29
52 53 4.937620 CCGCTGCATATCAATAGGTGTATT 59.062 41.667 0.00 0.00 0.00 1.89
53 54 5.412594 CCGCTGCATATCAATAGGTGTATTT 59.587 40.000 0.00 0.00 0.00 1.40
54 55 6.402550 CCGCTGCATATCAATAGGTGTATTTC 60.403 42.308 0.00 0.00 0.00 2.17
55 56 6.369890 CGCTGCATATCAATAGGTGTATTTCT 59.630 38.462 0.00 0.00 0.00 2.52
56 57 7.524912 GCTGCATATCAATAGGTGTATTTCTG 58.475 38.462 0.00 0.00 0.00 3.02
57 58 7.439157 TGCATATCAATAGGTGTATTTCTGC 57.561 36.000 0.00 0.00 0.00 4.26
58 59 7.226441 TGCATATCAATAGGTGTATTTCTGCT 58.774 34.615 0.00 0.00 0.00 4.24
59 60 7.173735 TGCATATCAATAGGTGTATTTCTGCTG 59.826 37.037 0.00 0.00 0.00 4.41
60 61 7.173907 GCATATCAATAGGTGTATTTCTGCTGT 59.826 37.037 0.00 0.00 0.00 4.40
61 62 9.060347 CATATCAATAGGTGTATTTCTGCTGTT 57.940 33.333 0.00 0.00 0.00 3.16
62 63 7.944729 ATCAATAGGTGTATTTCTGCTGTTT 57.055 32.000 0.00 0.00 0.00 2.83
63 64 7.144722 TCAATAGGTGTATTTCTGCTGTTTG 57.855 36.000 0.00 0.00 0.00 2.93
64 65 6.714810 TCAATAGGTGTATTTCTGCTGTTTGT 59.285 34.615 0.00 0.00 0.00 2.83
65 66 6.743575 ATAGGTGTATTTCTGCTGTTTGTC 57.256 37.500 0.00 0.00 0.00 3.18
66 67 4.718961 AGGTGTATTTCTGCTGTTTGTCT 58.281 39.130 0.00 0.00 0.00 3.41
67 68 5.133221 AGGTGTATTTCTGCTGTTTGTCTT 58.867 37.500 0.00 0.00 0.00 3.01
68 69 5.239525 AGGTGTATTTCTGCTGTTTGTCTTC 59.760 40.000 0.00 0.00 0.00 2.87
69 70 5.008613 GGTGTATTTCTGCTGTTTGTCTTCA 59.991 40.000 0.00 0.00 0.00 3.02
70 71 6.459573 GGTGTATTTCTGCTGTTTGTCTTCAA 60.460 38.462 0.00 0.00 0.00 2.69
71 72 6.972328 GTGTATTTCTGCTGTTTGTCTTCAAA 59.028 34.615 0.00 0.00 40.64 2.69
72 73 7.166473 GTGTATTTCTGCTGTTTGTCTTCAAAG 59.834 37.037 0.00 0.00 43.04 2.77
73 74 3.698029 TCTGCTGTTTGTCTTCAAAGC 57.302 42.857 0.00 0.00 43.04 3.51
74 75 2.358898 TCTGCTGTTTGTCTTCAAAGCC 59.641 45.455 0.00 0.00 43.04 4.35
75 76 1.408702 TGCTGTTTGTCTTCAAAGCCC 59.591 47.619 0.00 0.00 43.04 5.19
76 77 1.269778 GCTGTTTGTCTTCAAAGCCCC 60.270 52.381 0.00 0.00 43.04 5.80
77 78 1.341209 CTGTTTGTCTTCAAAGCCCCC 59.659 52.381 0.00 0.00 43.04 5.40
78 79 0.313987 GTTTGTCTTCAAAGCCCCCG 59.686 55.000 0.00 0.00 43.04 5.73
79 80 0.106419 TTTGTCTTCAAAGCCCCCGT 60.106 50.000 0.00 0.00 38.44 5.28
80 81 0.821711 TTGTCTTCAAAGCCCCCGTG 60.822 55.000 0.00 0.00 0.00 4.94
81 82 1.228154 GTCTTCAAAGCCCCCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
82 83 0.822121 GTCTTCAAAGCCCCCGTGTT 60.822 55.000 0.00 0.00 0.00 3.32
83 84 0.106419 TCTTCAAAGCCCCCGTGTTT 60.106 50.000 0.00 0.00 0.00 2.83
84 85 0.750249 CTTCAAAGCCCCCGTGTTTT 59.250 50.000 0.00 0.00 0.00 2.43
85 86 0.461961 TTCAAAGCCCCCGTGTTTTG 59.538 50.000 0.00 0.00 33.09 2.44
86 87 0.395862 TCAAAGCCCCCGTGTTTTGA 60.396 50.000 5.26 5.26 37.25 2.69
87 88 0.461961 CAAAGCCCCCGTGTTTTGAA 59.538 50.000 0.00 0.00 33.50 2.69
88 89 0.750249 AAAGCCCCCGTGTTTTGAAG 59.250 50.000 0.00 0.00 0.00 3.02
89 90 0.106419 AAGCCCCCGTGTTTTGAAGA 60.106 50.000 0.00 0.00 0.00 2.87
90 91 0.822121 AGCCCCCGTGTTTTGAAGAC 60.822 55.000 0.00 0.00 0.00 3.01
91 92 0.822121 GCCCCCGTGTTTTGAAGACT 60.822 55.000 0.00 0.00 0.00 3.24
92 93 1.687563 CCCCCGTGTTTTGAAGACTT 58.312 50.000 0.00 0.00 0.00 3.01
93 94 2.028876 CCCCCGTGTTTTGAAGACTTT 58.971 47.619 0.00 0.00 0.00 2.66
94 95 2.034179 CCCCCGTGTTTTGAAGACTTTC 59.966 50.000 0.00 0.00 0.00 2.62
95 96 2.685897 CCCCGTGTTTTGAAGACTTTCA 59.314 45.455 0.00 0.00 41.44 2.69
96 97 3.317993 CCCCGTGTTTTGAAGACTTTCAT 59.682 43.478 0.00 0.00 42.60 2.57
97 98 4.517453 CCCCGTGTTTTGAAGACTTTCATA 59.483 41.667 0.00 0.00 42.60 2.15
98 99 5.009210 CCCCGTGTTTTGAAGACTTTCATAA 59.991 40.000 0.00 0.00 42.60 1.90
99 100 6.460399 CCCCGTGTTTTGAAGACTTTCATAAA 60.460 38.462 0.00 0.00 42.60 1.40
100 101 6.975772 CCCGTGTTTTGAAGACTTTCATAAAA 59.024 34.615 0.00 0.00 42.60 1.52
101 102 7.489757 CCCGTGTTTTGAAGACTTTCATAAAAA 59.510 33.333 0.00 0.00 42.60 1.94
102 103 9.030301 CCGTGTTTTGAAGACTTTCATAAAAAT 57.970 29.630 0.00 0.00 42.60 1.82
105 106 8.751335 TGTTTTGAAGACTTTCATAAAAATCGC 58.249 29.630 0.00 0.00 42.60 4.58
106 107 7.867445 TTTGAAGACTTTCATAAAAATCGCC 57.133 32.000 0.00 0.00 42.60 5.54
107 108 6.817765 TGAAGACTTTCATAAAAATCGCCT 57.182 33.333 0.00 0.00 38.37 5.52
108 109 7.915293 TGAAGACTTTCATAAAAATCGCCTA 57.085 32.000 0.00 0.00 38.37 3.93
109 110 8.506168 TGAAGACTTTCATAAAAATCGCCTAT 57.494 30.769 0.00 0.00 38.37 2.57
110 111 8.956426 TGAAGACTTTCATAAAAATCGCCTATT 58.044 29.630 0.00 0.00 38.37 1.73
111 112 9.439537 GAAGACTTTCATAAAAATCGCCTATTC 57.560 33.333 0.00 0.00 33.38 1.75
112 113 8.506168 AGACTTTCATAAAAATCGCCTATTCA 57.494 30.769 0.00 0.00 0.00 2.57
113 114 8.398665 AGACTTTCATAAAAATCGCCTATTCAC 58.601 33.333 0.00 0.00 0.00 3.18
114 115 7.480810 ACTTTCATAAAAATCGCCTATTCACC 58.519 34.615 0.00 0.00 0.00 4.02
115 116 6.385649 TTCATAAAAATCGCCTATTCACCC 57.614 37.500 0.00 0.00 0.00 4.61
116 117 4.825085 TCATAAAAATCGCCTATTCACCCC 59.175 41.667 0.00 0.00 0.00 4.95
117 118 2.067365 AAAATCGCCTATTCACCCCC 57.933 50.000 0.00 0.00 0.00 5.40
137 138 6.270156 CCCCCTCTAGTCGATAATTAGTTC 57.730 45.833 0.00 0.00 0.00 3.01
138 139 6.011481 CCCCCTCTAGTCGATAATTAGTTCT 58.989 44.000 0.00 0.00 0.00 3.01
139 140 6.494146 CCCCCTCTAGTCGATAATTAGTTCTT 59.506 42.308 0.00 0.00 0.00 2.52
142 143 8.630917 CCCTCTAGTCGATAATTAGTTCTTTCA 58.369 37.037 0.00 0.00 0.00 2.69
191 192 1.220206 CCAGCCTGAGACGATGCTT 59.780 57.895 0.00 0.00 30.08 3.91
198 199 1.035385 TGAGACGATGCTTCCGCCTA 61.035 55.000 0.00 0.00 34.43 3.93
219 220 1.596934 GTGCTTGGGACGATCCTCA 59.403 57.895 0.00 0.00 36.57 3.86
241 242 1.017387 GATGAGAAGCCGCGGAAAAT 58.983 50.000 33.48 11.78 0.00 1.82
263 264 1.973281 CCAACTCATGTGCCCGCTT 60.973 57.895 0.00 0.00 0.00 4.68
289 290 3.110178 CCACGTCGGCGAAGTTCC 61.110 66.667 25.22 4.99 42.00 3.62
369 370 2.029964 GCGGTGTCGAAGGTTCCA 59.970 61.111 0.00 0.00 39.00 3.53
511 551 4.509737 GTGTCGGCGGTAGAGGGC 62.510 72.222 7.21 0.00 0.00 5.19
532 583 2.757917 GGAGAGAGCGGCAGAGGT 60.758 66.667 1.45 0.00 0.00 3.85
553 619 0.385974 GCTGCAATTTATAGGCGCGG 60.386 55.000 8.83 0.00 0.00 6.46
638 754 3.607987 CGCGCTACTTTCTCGCCG 61.608 66.667 5.56 0.00 45.34 6.46
692 810 3.056393 GCTAAAAAGCCAATTTACCCCGT 60.056 43.478 0.00 0.00 0.00 5.28
735 853 4.042187 ACTGTTGGAGATGCTCTTAGGTTT 59.958 41.667 0.00 0.00 0.00 3.27
831 951 3.400054 GGAACGGGCCAGCCTACT 61.400 66.667 4.39 0.00 36.10 2.57
834 954 2.307611 GAACGGGCCAGCCTACTACC 62.308 65.000 4.39 0.00 36.10 3.18
835 955 2.762459 CGGGCCAGCCTACTACCA 60.762 66.667 4.39 0.00 36.10 3.25
836 956 2.908796 GGGCCAGCCTACTACCAC 59.091 66.667 4.39 0.00 36.10 4.16
837 957 2.743179 GGGCCAGCCTACTACCACC 61.743 68.421 4.39 0.00 36.10 4.61
838 958 1.993391 GGCCAGCCTACTACCACCA 60.993 63.158 0.00 0.00 0.00 4.17
844 964 1.907255 AGCCTACTACCACCACTTTCC 59.093 52.381 0.00 0.00 0.00 3.13
845 965 1.405121 GCCTACTACCACCACTTTCCG 60.405 57.143 0.00 0.00 0.00 4.30
852 972 2.035626 ACCACTTTCCGGCCCATG 59.964 61.111 0.00 0.00 0.00 3.66
876 996 2.901042 GGTAACTCTCCAGCGGGG 59.099 66.667 2.05 0.00 38.37 5.73
878 998 1.551019 GGTAACTCTCCAGCGGGGTT 61.551 60.000 2.05 2.07 38.11 4.11
879 999 0.108281 GTAACTCTCCAGCGGGGTTC 60.108 60.000 2.05 0.00 38.11 3.62
880 1000 0.252103 TAACTCTCCAGCGGGGTTCT 60.252 55.000 2.05 0.00 38.11 3.01
881 1001 1.545706 AACTCTCCAGCGGGGTTCTC 61.546 60.000 2.05 0.00 38.11 2.87
882 1002 3.068691 TCTCCAGCGGGGTTCTCG 61.069 66.667 2.05 0.00 38.11 4.04
889 1009 4.215742 CGGGGTTCTCGCGGCATA 62.216 66.667 6.13 0.00 46.25 3.14
890 1010 2.588034 GGGGTTCTCGCGGCATAC 60.588 66.667 6.13 0.00 0.00 2.39
891 1011 2.185867 GGGTTCTCGCGGCATACA 59.814 61.111 6.13 0.00 0.00 2.29
892 1012 1.448893 GGGTTCTCGCGGCATACAA 60.449 57.895 6.13 0.00 0.00 2.41
893 1013 1.702491 GGGTTCTCGCGGCATACAAC 61.702 60.000 6.13 0.31 0.00 3.32
894 1014 1.702491 GGTTCTCGCGGCATACAACC 61.702 60.000 6.13 6.17 0.00 3.77
895 1015 1.448893 TTCTCGCGGCATACAACCC 60.449 57.895 6.13 0.00 0.00 4.11
901 1021 1.302913 CGGCATACAACCCACACCA 60.303 57.895 0.00 0.00 0.00 4.17
902 1022 0.891449 CGGCATACAACCCACACCAA 60.891 55.000 0.00 0.00 0.00 3.67
912 1032 4.012895 CACACCAACGCCAGTCGC 62.013 66.667 0.00 0.00 43.23 5.19
929 1054 4.704833 CCCCCACACGAGCACTGG 62.705 72.222 0.00 0.00 0.00 4.00
949 1074 1.886542 GAATTCTGGAACCGCCTGTTT 59.113 47.619 0.00 0.00 37.29 2.83
1070 1195 0.456995 CTGCTCTCCGTCTCCGTTTC 60.457 60.000 0.00 0.00 0.00 2.78
1095 1222 6.819146 CGGTAGGAAAAATAGAGAAAGCTTCT 59.181 38.462 0.00 0.00 44.21 2.85
1191 1324 4.822026 CGGGAAGATCTGTGTTCTTACTT 58.178 43.478 0.00 0.00 34.91 2.24
1201 1334 8.627208 ATCTGTGTTCTTACTTTTCATGTGAT 57.373 30.769 0.00 0.00 0.00 3.06
1330 1472 8.653338 CCAAATGAAAATGTAAGATTGCTTGAG 58.347 33.333 0.00 0.00 35.56 3.02
1395 1540 4.024556 CGACAAGTCTTCTTCAACTGCATT 60.025 41.667 0.00 0.00 0.00 3.56
1415 1560 1.930503 TCGTCGATGCGTGCATTTTAT 59.069 42.857 8.98 0.00 36.70 1.40
1439 1626 3.793797 TCTGGATTAACGCTCAATCGA 57.206 42.857 0.00 0.00 33.94 3.59
1501 1688 6.755542 TTTTTCCCCACTGGATTAACAAAT 57.244 33.333 0.00 0.00 44.66 2.32
1502 1689 6.755542 TTTTCCCCACTGGATTAACAAATT 57.244 33.333 0.00 0.00 44.66 1.82
1503 1690 5.736951 TTCCCCACTGGATTAACAAATTG 57.263 39.130 0.00 0.00 44.66 2.32
1504 1691 4.746466 TCCCCACTGGATTAACAAATTGT 58.254 39.130 0.00 0.00 38.61 2.71
1505 1692 5.151454 TCCCCACTGGATTAACAAATTGTT 58.849 37.500 16.05 16.05 40.34 2.83
1506 1693 6.315714 TCCCCACTGGATTAACAAATTGTTA 58.684 36.000 13.93 13.93 38.88 2.41
1507 1694 6.209788 TCCCCACTGGATTAACAAATTGTTAC 59.790 38.462 17.14 7.81 39.27 2.50
1755 1946 8.527810 ACATAACATAACGGAAAATGGTGATTT 58.472 29.630 0.00 0.00 32.87 2.17
1806 2010 3.759618 AGGAACAACTTTCCACGTCAAAA 59.240 39.130 5.85 0.00 41.00 2.44
1823 2028 2.070262 AAAGCGGAAAAATGAGCTGC 57.930 45.000 0.00 0.00 40.17 5.25
1850 2055 6.534793 GCCTTTGTTTCAAAAGAAATGAGTGA 59.465 34.615 5.11 0.00 39.12 3.41
1889 2094 5.204101 GCAAAATGTTACCAAAATGCACAC 58.796 37.500 0.00 0.00 33.00 3.82
1929 2134 6.041511 TGTCGTGTGCTAGTTTTAAGTGTAA 58.958 36.000 0.00 0.00 0.00 2.41
1990 2195 8.828688 TCAACATGATTTTCAAAATGTATGCA 57.171 26.923 0.00 0.00 33.04 3.96
2139 2350 1.153127 TTGGAGCGTCCCACGTTTT 60.153 52.632 0.00 0.00 44.73 2.43
2170 2383 2.066262 TCGATGTTCGCCTTGTTTCTC 58.934 47.619 0.00 0.00 40.21 2.87
2179 2392 4.171005 TCGCCTTGTTTCTCAGTATTACG 58.829 43.478 0.00 0.00 0.00 3.18
2232 2498 3.314307 AGTGTCCCTATCTTCCGATCA 57.686 47.619 0.00 0.00 0.00 2.92
2262 2529 7.008332 TGTATAGGTTTATACTGCCTGCTAGA 58.992 38.462 0.00 0.00 41.39 2.43
2290 2557 4.500499 AGTACTATACTGTCTGGGACGT 57.500 45.455 0.00 0.00 37.69 4.34
2309 2576 0.320374 TAGTCAGGGCCTTTGTCACG 59.680 55.000 1.32 0.00 0.00 4.35
2310 2577 1.227853 GTCAGGGCCTTTGTCACGT 60.228 57.895 1.32 0.00 0.00 4.49
2317 2584 1.001633 GGCCTTTGTCACGTCTAGGAA 59.998 52.381 0.00 0.00 0.00 3.36
2326 2593 3.870419 GTCACGTCTAGGAATCGTCTAGT 59.130 47.826 0.00 0.00 36.50 2.57
2330 2597 4.066490 CGTCTAGGAATCGTCTAGTGGAT 58.934 47.826 0.00 0.00 36.50 3.41
2360 2628 4.180723 TCTGGGTGGGGTAAAAGAACTAT 58.819 43.478 0.00 0.00 0.00 2.12
2366 2634 5.296035 GGTGGGGTAAAAGAACTATGAATCG 59.704 44.000 0.00 0.00 0.00 3.34
2376 2644 4.279671 AGAACTATGAATCGCCGATCTCTT 59.720 41.667 0.00 2.08 0.00 2.85
2382 2650 2.990066 ATCGCCGATCTCTTCCTTTT 57.010 45.000 0.00 0.00 0.00 2.27
2433 2701 3.689649 GGAGCGAAAACACCTCATATGTT 59.310 43.478 1.90 0.00 42.07 2.71
2476 2744 1.636003 GGTTCCCCACTCTTTGATCCT 59.364 52.381 0.00 0.00 0.00 3.24
2481 2749 2.191400 CCCACTCTTTGATCCTGAGGA 58.809 52.381 2.43 2.43 35.55 3.71
2484 2752 2.568956 CACTCTTTGATCCTGAGGACCA 59.431 50.000 1.77 0.00 32.98 4.02
2496 2764 0.250338 GAGGACCAAGCGACAACCTT 60.250 55.000 0.00 0.00 0.00 3.50
2510 2778 2.092429 ACAACCTTGACCAGAGCTGAAA 60.092 45.455 0.00 0.00 0.00 2.69
2714 2982 7.029563 CCAATATACAAGAAAACTTCAGGCAC 58.970 38.462 0.00 0.00 0.00 5.01
2727 2995 4.202284 ACTTCAGGCACCTTAGTTTCGTTA 60.202 41.667 0.00 0.00 0.00 3.18
2793 3061 3.170791 TGAACGAGGCATCAAGAGATC 57.829 47.619 0.00 0.00 30.20 2.75
2857 3125 6.412214 TCCTAAGACAGGCAAAGGTAATAAC 58.588 40.000 0.00 0.00 45.10 1.89
2888 3160 8.833231 TGCAGTAGTTATATATTGCCTTCTTC 57.167 34.615 3.08 0.00 37.53 2.87
2889 3161 8.651389 TGCAGTAGTTATATATTGCCTTCTTCT 58.349 33.333 3.08 0.00 37.53 2.85
2890 3162 9.495572 GCAGTAGTTATATATTGCCTTCTTCTT 57.504 33.333 0.00 0.00 33.58 2.52
3346 3693 4.070552 GTCGCCTCCAACCGCTCT 62.071 66.667 0.00 0.00 0.00 4.09
3402 3749 3.435186 GCCGGAGCAGCACCTTTC 61.435 66.667 5.05 0.00 39.53 2.62
3403 3750 2.747855 CCGGAGCAGCACCTTTCC 60.748 66.667 7.34 0.00 0.00 3.13
3404 3751 2.747855 CGGAGCAGCACCTTTCCC 60.748 66.667 7.34 0.00 0.00 3.97
3405 3752 2.747855 GGAGCAGCACCTTTCCCG 60.748 66.667 0.77 0.00 0.00 5.14
3406 3753 3.435186 GAGCAGCACCTTTCCCGC 61.435 66.667 0.00 0.00 0.00 6.13
3409 3756 2.747855 CAGCACCTTTCCCGCCTC 60.748 66.667 0.00 0.00 0.00 4.70
3410 3757 4.394712 AGCACCTTTCCCGCCTCG 62.395 66.667 0.00 0.00 0.00 4.63
3414 3761 4.840005 CCTTTCCCGCCTCGCCTC 62.840 72.222 0.00 0.00 0.00 4.70
3415 3762 4.840005 CTTTCCCGCCTCGCCTCC 62.840 72.222 0.00 0.00 0.00 4.30
3422 3769 4.699522 GCCTCGCCTCCAACCGTT 62.700 66.667 0.00 0.00 0.00 4.44
3423 3770 2.434359 CCTCGCCTCCAACCGTTC 60.434 66.667 0.00 0.00 0.00 3.95
3424 3771 2.809601 CTCGCCTCCAACCGTTCG 60.810 66.667 0.00 0.00 0.00 3.95
3425 3772 3.569049 CTCGCCTCCAACCGTTCGT 62.569 63.158 0.00 0.00 0.00 3.85
3426 3773 3.110178 CGCCTCCAACCGTTCGTC 61.110 66.667 0.00 0.00 0.00 4.20
3427 3774 2.741211 GCCTCCAACCGTTCGTCC 60.741 66.667 0.00 0.00 0.00 4.79
3428 3775 2.738480 CCTCCAACCGTTCGTCCA 59.262 61.111 0.00 0.00 0.00 4.02
3429 3776 1.374252 CCTCCAACCGTTCGTCCAG 60.374 63.158 0.00 0.00 0.00 3.86
3430 3777 1.374252 CTCCAACCGTTCGTCCAGG 60.374 63.158 0.00 0.00 0.00 4.45
3431 3778 2.358247 CCAACCGTTCGTCCAGGG 60.358 66.667 0.00 0.00 0.00 4.45
3432 3779 2.424302 CAACCGTTCGTCCAGGGT 59.576 61.111 0.00 0.00 36.45 4.34
3433 3780 1.666872 CAACCGTTCGTCCAGGGTC 60.667 63.158 0.00 0.00 33.66 4.46
3434 3781 3.216944 AACCGTTCGTCCAGGGTCG 62.217 63.158 0.00 0.00 33.66 4.79
3706 4267 2.730976 TCGTCGTCGTCGTCGTCT 60.731 61.111 18.44 0.00 45.27 4.18
3997 4558 1.578023 CGCGTACACGAATCTGAAGAC 59.422 52.381 5.84 0.00 43.02 3.01
4330 4891 1.546961 GGGAACGACAGGAGAGAAGA 58.453 55.000 0.00 0.00 0.00 2.87
4414 4975 3.055719 CACCACCACCACATCGGC 61.056 66.667 0.00 0.00 39.03 5.54
4471 5038 1.945662 CCGCAGCAACAACAGCAAC 60.946 57.895 0.00 0.00 0.00 4.17
4494 5070 4.208686 GTGGAGCTACCTCGGCGG 62.209 72.222 7.21 0.00 39.06 6.13
4582 5176 0.379316 ACGACGCAAAGGAAAACCAC 59.621 50.000 0.00 0.00 0.00 4.16
4620 5214 3.771160 GAGCCGGACGGTGGTGAT 61.771 66.667 5.05 0.00 37.65 3.06
4777 5377 0.250901 AGGTCAATCACTGGTGGCAC 60.251 55.000 9.70 9.70 0.00 5.01
4870 5470 1.579429 GTAGTTTTGTGCGCCTGGG 59.421 57.895 4.18 0.00 0.00 4.45
4915 5515 7.647318 CAGCATGTACTACAATTTGTGTTCAAA 59.353 33.333 12.30 0.00 45.71 2.69
4988 5904 8.500837 TCTTACAATTAATTTGTTCGTTGCAG 57.499 30.769 0.00 0.00 46.51 4.41
5015 5931 9.231297 TGAGGGTAGACAATAAAATTTGAGAAG 57.769 33.333 0.00 0.00 0.00 2.85
5037 5953 5.255687 AGCCAAATGATAAGTGTCACATGA 58.744 37.500 5.62 0.00 0.00 3.07
5051 6292 5.007039 GTGTCACATGATAGATGCGTGAAAT 59.993 40.000 0.00 0.00 38.26 2.17
5070 6311 1.167781 TTCCGGCCCTGACGTTTTTC 61.168 55.000 0.00 0.00 28.54 2.29
5078 6319 1.468520 CCTGACGTTTTTCGATGGCAT 59.531 47.619 0.00 0.00 42.86 4.40
5086 6327 7.769252 ACGTTTTTCGATGGCATTTCCAGTC 62.769 44.000 0.00 0.00 45.10 3.51
5099 6346 4.695217 TTTCCAGTCATACGGCAAATTC 57.305 40.909 0.00 0.00 0.00 2.17
5120 6526 5.456548 TCCAGTCATACACGACAAGTTTA 57.543 39.130 0.00 0.00 38.43 2.01
5157 8345 1.890876 AGTACGAAAGTTGCCATGCA 58.109 45.000 0.00 0.00 46.40 3.96
5183 8371 3.648339 TCCTCGCGTAACTAAACTTGT 57.352 42.857 5.77 0.00 0.00 3.16
5187 8375 5.097529 CCTCGCGTAACTAAACTTGTCATA 58.902 41.667 5.77 0.00 0.00 2.15
5192 8545 6.411652 GCGTAACTAAACTTGTCATATGCTC 58.588 40.000 0.00 0.00 0.00 4.26
5201 8554 3.710326 TGTCATATGCTCGTACCTGAC 57.290 47.619 0.00 0.00 34.91 3.51
5216 8569 0.992072 CTGACGTGTGGCACTTATCG 59.008 55.000 19.83 18.40 31.34 2.92
5246 8599 2.597520 GAGAAAAACTCTCCCTCGTCG 58.402 52.381 0.00 0.00 44.39 5.12
5269 8622 2.079158 CTGATTTCTCAGGCGCTTTCA 58.921 47.619 7.64 0.00 44.40 2.69
5271 8624 3.084039 TGATTTCTCAGGCGCTTTCATT 58.916 40.909 7.64 0.00 0.00 2.57
5272 8625 2.995466 TTTCTCAGGCGCTTTCATTG 57.005 45.000 7.64 0.00 0.00 2.82
5279 8632 2.033675 CAGGCGCTTTCATTGCATCATA 59.966 45.455 7.64 0.00 0.00 2.15
5284 8637 3.485711 CGCTTTCATTGCATCATACACGT 60.486 43.478 0.00 0.00 0.00 4.49
5291 8644 0.107897 GCATCATACACGTGTCCCCA 60.108 55.000 27.16 8.10 0.00 4.96
5314 8668 3.483869 CTAGCCCACCCCTCAGCC 61.484 72.222 0.00 0.00 0.00 4.85
5323 8677 0.178873 ACCCCTCAGCCTTACCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
5342 8696 6.614906 ACCTTCAACTATCTCTTCTCATCCAT 59.385 38.462 0.00 0.00 0.00 3.41
5343 8697 7.153985 CCTTCAACTATCTCTTCTCATCCATC 58.846 42.308 0.00 0.00 0.00 3.51
5344 8698 6.324561 TCAACTATCTCTTCTCATCCATCG 57.675 41.667 0.00 0.00 0.00 3.84
5345 8699 5.830457 TCAACTATCTCTTCTCATCCATCGT 59.170 40.000 0.00 0.00 0.00 3.73
5346 8700 5.957842 ACTATCTCTTCTCATCCATCGTC 57.042 43.478 0.00 0.00 0.00 4.20
5347 8701 5.380900 ACTATCTCTTCTCATCCATCGTCA 58.619 41.667 0.00 0.00 0.00 4.35
5350 8704 4.468713 TCTCTTCTCATCCATCGTCATCT 58.531 43.478 0.00 0.00 0.00 2.90
5369 8730 1.436179 TTCCCCCGATTTCCCAACCA 61.436 55.000 0.00 0.00 0.00 3.67
5375 8736 0.804989 CGATTTCCCAACCACTCAGC 59.195 55.000 0.00 0.00 0.00 4.26
5376 8737 1.177401 GATTTCCCAACCACTCAGCC 58.823 55.000 0.00 0.00 0.00 4.85
5378 8739 3.842925 TTCCCAACCACTCAGCCGC 62.843 63.158 0.00 0.00 0.00 6.53
5401 8762 3.822735 TGCCTTCTTCTCTCCAACATTTG 59.177 43.478 0.00 0.00 0.00 2.32
5408 8769 3.251484 TCTCTCCAACATTTGTCTCCCT 58.749 45.455 0.00 0.00 0.00 4.20
5422 8783 2.036098 CCCTCAACCAGCATGCCA 59.964 61.111 15.66 0.00 31.97 4.92
5433 8794 1.007734 GCATGCCAATGGATGCTCG 60.008 57.895 21.28 0.03 41.52 5.03
5444 8805 1.153549 GATGCTCGTCCTCCACACC 60.154 63.158 0.00 0.00 0.00 4.16
5448 8809 1.290324 CTCGTCCTCCACACCAGTG 59.710 63.158 0.00 0.00 45.47 3.66
5453 8814 2.510411 CTCCACACCAGTGCCACA 59.490 61.111 0.00 0.00 44.53 4.17
5454 8815 1.152984 CTCCACACCAGTGCCACAA 60.153 57.895 0.00 0.00 44.53 3.33
5469 8830 0.682209 CACAAATGCTCCTCCCCCAG 60.682 60.000 0.00 0.00 0.00 4.45
5472 8833 1.867595 AAATGCTCCTCCCCCAGGTG 61.868 60.000 0.00 0.00 43.95 4.00
5516 8877 1.076727 CCCCCTTCCCCAAGTGAAC 59.923 63.158 0.00 0.00 0.00 3.18
5669 9031 4.835927 CCTGTTGGCTACCGCTAG 57.164 61.111 0.00 0.00 36.09 3.42
5686 9048 4.512944 CCGCTAGTGTTGCAATTGAGATAT 59.487 41.667 10.34 0.00 0.00 1.63
5691 9053 2.287644 TGTTGCAATTGAGATATCGCCG 59.712 45.455 10.34 0.00 0.00 6.46
5763 9125 0.392461 GCCTGCATAAGTCGTTGGGA 60.392 55.000 0.00 0.00 0.00 4.37
5810 9172 4.594854 ACATGCCCCGGTTGCACA 62.595 61.111 17.11 0.00 42.38 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.511363 AGACTACACTAGACAAGCCATAGT 58.489 41.667 0.00 0.00 0.00 2.12
1 2 6.016943 GGTAGACTACACTAGACAAGCCATAG 60.017 46.154 14.48 0.00 0.00 2.23
3 4 4.645588 GGTAGACTACACTAGACAAGCCAT 59.354 45.833 14.48 0.00 0.00 4.40
5 6 4.271661 AGGTAGACTACACTAGACAAGCC 58.728 47.826 14.48 0.00 0.00 4.35
6 7 5.163632 GGAAGGTAGACTACACTAGACAAGC 60.164 48.000 14.48 0.00 0.00 4.01
7 8 5.064962 CGGAAGGTAGACTACACTAGACAAG 59.935 48.000 14.48 0.00 0.00 3.16
8 9 4.940046 CGGAAGGTAGACTACACTAGACAA 59.060 45.833 14.48 0.00 0.00 3.18
9 10 4.511527 CGGAAGGTAGACTACACTAGACA 58.488 47.826 14.48 0.00 0.00 3.41
10 11 3.312146 GCGGAAGGTAGACTACACTAGAC 59.688 52.174 14.48 0.00 0.00 2.59
11 12 3.199508 AGCGGAAGGTAGACTACACTAGA 59.800 47.826 14.48 0.00 41.99 2.43
12 13 3.312973 CAGCGGAAGGTAGACTACACTAG 59.687 52.174 14.48 3.11 41.81 2.57
13 14 3.276857 CAGCGGAAGGTAGACTACACTA 58.723 50.000 14.48 0.00 41.81 2.74
14 15 2.093106 CAGCGGAAGGTAGACTACACT 58.907 52.381 14.48 6.41 41.81 3.55
15 16 1.469423 GCAGCGGAAGGTAGACTACAC 60.469 57.143 14.48 4.28 41.81 2.90
16 17 0.815734 GCAGCGGAAGGTAGACTACA 59.184 55.000 14.48 0.00 41.81 2.74
17 18 0.815734 TGCAGCGGAAGGTAGACTAC 59.184 55.000 3.86 3.86 41.81 2.73
18 19 1.776662 ATGCAGCGGAAGGTAGACTA 58.223 50.000 0.00 0.00 41.81 2.59
19 20 1.776662 TATGCAGCGGAAGGTAGACT 58.223 50.000 0.00 0.00 41.81 3.24
20 21 2.035961 TGATATGCAGCGGAAGGTAGAC 59.964 50.000 0.00 0.00 41.81 2.59
21 22 2.316108 TGATATGCAGCGGAAGGTAGA 58.684 47.619 0.00 0.00 41.81 2.59
22 23 2.820059 TGATATGCAGCGGAAGGTAG 57.180 50.000 0.00 0.00 41.81 3.18
23 24 3.769739 ATTGATATGCAGCGGAAGGTA 57.230 42.857 0.00 0.00 41.81 3.08
24 25 2.645838 ATTGATATGCAGCGGAAGGT 57.354 45.000 0.00 0.00 46.81 3.50
25 26 3.005554 CCTATTGATATGCAGCGGAAGG 58.994 50.000 0.00 0.00 0.00 3.46
26 27 3.434641 CACCTATTGATATGCAGCGGAAG 59.565 47.826 0.00 0.00 0.00 3.46
27 28 3.181455 ACACCTATTGATATGCAGCGGAA 60.181 43.478 0.00 0.00 0.00 4.30
28 29 2.368548 ACACCTATTGATATGCAGCGGA 59.631 45.455 0.00 0.00 0.00 5.54
29 30 2.771089 ACACCTATTGATATGCAGCGG 58.229 47.619 0.00 0.00 0.00 5.52
30 31 6.369890 AGAAATACACCTATTGATATGCAGCG 59.630 38.462 0.00 0.00 0.00 5.18
31 32 7.524912 CAGAAATACACCTATTGATATGCAGC 58.475 38.462 0.00 0.00 0.00 5.25
32 33 7.389884 AGCAGAAATACACCTATTGATATGCAG 59.610 37.037 0.00 0.00 0.00 4.41
33 34 7.173735 CAGCAGAAATACACCTATTGATATGCA 59.826 37.037 0.00 0.00 0.00 3.96
34 35 7.173907 ACAGCAGAAATACACCTATTGATATGC 59.826 37.037 0.00 0.00 0.00 3.14
35 36 8.613060 ACAGCAGAAATACACCTATTGATATG 57.387 34.615 0.00 0.00 0.00 1.78
36 37 9.632638 AAACAGCAGAAATACACCTATTGATAT 57.367 29.630 0.00 0.00 0.00 1.63
37 38 8.892723 CAAACAGCAGAAATACACCTATTGATA 58.107 33.333 0.00 0.00 0.00 2.15
38 39 7.394359 ACAAACAGCAGAAATACACCTATTGAT 59.606 33.333 0.00 0.00 0.00 2.57
39 40 6.714810 ACAAACAGCAGAAATACACCTATTGA 59.285 34.615 0.00 0.00 0.00 2.57
40 41 6.913170 ACAAACAGCAGAAATACACCTATTG 58.087 36.000 0.00 0.00 0.00 1.90
41 42 6.942576 AGACAAACAGCAGAAATACACCTATT 59.057 34.615 0.00 0.00 0.00 1.73
42 43 6.476378 AGACAAACAGCAGAAATACACCTAT 58.524 36.000 0.00 0.00 0.00 2.57
43 44 5.865085 AGACAAACAGCAGAAATACACCTA 58.135 37.500 0.00 0.00 0.00 3.08
44 45 4.718961 AGACAAACAGCAGAAATACACCT 58.281 39.130 0.00 0.00 0.00 4.00
45 46 5.008613 TGAAGACAAACAGCAGAAATACACC 59.991 40.000 0.00 0.00 0.00 4.16
46 47 6.060028 TGAAGACAAACAGCAGAAATACAC 57.940 37.500 0.00 0.00 0.00 2.90
47 48 6.691754 TTGAAGACAAACAGCAGAAATACA 57.308 33.333 0.00 0.00 32.73 2.29
48 49 6.142958 GCTTTGAAGACAAACAGCAGAAATAC 59.857 38.462 0.00 0.00 40.47 1.89
49 50 6.208644 GCTTTGAAGACAAACAGCAGAAATA 58.791 36.000 0.00 0.00 40.47 1.40
50 51 5.045872 GCTTTGAAGACAAACAGCAGAAAT 58.954 37.500 0.00 0.00 40.47 2.17
51 52 4.423732 GCTTTGAAGACAAACAGCAGAAA 58.576 39.130 0.00 0.00 40.47 2.52
52 53 3.181487 GGCTTTGAAGACAAACAGCAGAA 60.181 43.478 0.00 0.00 39.92 3.02
53 54 2.358898 GGCTTTGAAGACAAACAGCAGA 59.641 45.455 0.00 0.00 39.92 4.26
54 55 2.544486 GGGCTTTGAAGACAAACAGCAG 60.544 50.000 0.00 0.00 39.92 4.24
55 56 1.408702 GGGCTTTGAAGACAAACAGCA 59.591 47.619 0.00 0.00 39.92 4.41
56 57 1.269778 GGGGCTTTGAAGACAAACAGC 60.270 52.381 0.00 0.00 40.47 4.40
57 58 1.341209 GGGGGCTTTGAAGACAAACAG 59.659 52.381 0.00 0.00 40.47 3.16
58 59 1.408969 GGGGGCTTTGAAGACAAACA 58.591 50.000 0.00 0.00 40.47 2.83
59 60 0.313987 CGGGGGCTTTGAAGACAAAC 59.686 55.000 0.00 0.00 40.47 2.93
60 61 0.106419 ACGGGGGCTTTGAAGACAAA 60.106 50.000 0.00 0.00 42.66 2.83
61 62 0.821711 CACGGGGGCTTTGAAGACAA 60.822 55.000 0.00 0.00 35.04 3.18
62 63 1.228124 CACGGGGGCTTTGAAGACA 60.228 57.895 0.00 0.00 35.04 3.41
63 64 0.822121 AACACGGGGGCTTTGAAGAC 60.822 55.000 0.00 0.00 0.00 3.01
64 65 0.106419 AAACACGGGGGCTTTGAAGA 60.106 50.000 0.00 0.00 0.00 2.87
65 66 0.750249 AAAACACGGGGGCTTTGAAG 59.250 50.000 0.00 0.00 0.00 3.02
66 67 0.461961 CAAAACACGGGGGCTTTGAA 59.538 50.000 3.76 0.00 31.77 2.69
67 68 0.395862 TCAAAACACGGGGGCTTTGA 60.396 50.000 7.51 7.51 35.88 2.69
68 69 0.461961 TTCAAAACACGGGGGCTTTG 59.538 50.000 0.00 0.00 0.00 2.77
69 70 0.750249 CTTCAAAACACGGGGGCTTT 59.250 50.000 0.00 0.00 0.00 3.51
70 71 0.106419 TCTTCAAAACACGGGGGCTT 60.106 50.000 0.00 0.00 0.00 4.35
71 72 0.822121 GTCTTCAAAACACGGGGGCT 60.822 55.000 0.00 0.00 0.00 5.19
72 73 0.822121 AGTCTTCAAAACACGGGGGC 60.822 55.000 0.00 0.00 0.00 5.80
73 74 1.687563 AAGTCTTCAAAACACGGGGG 58.312 50.000 0.00 0.00 0.00 5.40
74 75 2.685897 TGAAAGTCTTCAAAACACGGGG 59.314 45.455 0.00 0.00 38.65 5.73
75 76 4.568152 ATGAAAGTCTTCAAAACACGGG 57.432 40.909 0.00 0.00 44.64 5.28
76 77 7.979115 TTTTATGAAAGTCTTCAAAACACGG 57.021 32.000 0.00 0.00 44.64 4.94
79 80 8.751335 GCGATTTTTATGAAAGTCTTCAAAACA 58.249 29.630 4.37 0.00 44.64 2.83
80 81 8.214472 GGCGATTTTTATGAAAGTCTTCAAAAC 58.786 33.333 4.37 0.00 44.64 2.43
81 82 8.141268 AGGCGATTTTTATGAAAGTCTTCAAAA 58.859 29.630 4.37 0.00 44.64 2.44
82 83 7.657336 AGGCGATTTTTATGAAAGTCTTCAAA 58.343 30.769 4.37 0.00 44.64 2.69
83 84 7.214467 AGGCGATTTTTATGAAAGTCTTCAA 57.786 32.000 4.37 0.00 44.64 2.69
84 85 6.817765 AGGCGATTTTTATGAAAGTCTTCA 57.182 33.333 4.37 0.00 45.53 3.02
85 86 9.439537 GAATAGGCGATTTTTATGAAAGTCTTC 57.560 33.333 4.37 0.00 31.44 2.87
86 87 8.956426 TGAATAGGCGATTTTTATGAAAGTCTT 58.044 29.630 4.37 0.00 31.44 3.01
87 88 8.398665 GTGAATAGGCGATTTTTATGAAAGTCT 58.601 33.333 4.37 0.00 31.44 3.24
88 89 7.644157 GGTGAATAGGCGATTTTTATGAAAGTC 59.356 37.037 0.00 0.00 0.00 3.01
89 90 7.416326 GGGTGAATAGGCGATTTTTATGAAAGT 60.416 37.037 0.00 0.00 0.00 2.66
90 91 6.918022 GGGTGAATAGGCGATTTTTATGAAAG 59.082 38.462 0.00 0.00 0.00 2.62
91 92 6.183360 GGGGTGAATAGGCGATTTTTATGAAA 60.183 38.462 0.00 0.00 0.00 2.69
92 93 5.300792 GGGGTGAATAGGCGATTTTTATGAA 59.699 40.000 0.00 0.00 0.00 2.57
93 94 4.825085 GGGGTGAATAGGCGATTTTTATGA 59.175 41.667 0.00 0.00 0.00 2.15
94 95 4.022329 GGGGGTGAATAGGCGATTTTTATG 60.022 45.833 0.00 0.00 0.00 1.90
95 96 4.149598 GGGGGTGAATAGGCGATTTTTAT 58.850 43.478 0.00 0.00 0.00 1.40
96 97 3.558033 GGGGGTGAATAGGCGATTTTTA 58.442 45.455 0.00 0.00 0.00 1.52
97 98 2.384828 GGGGGTGAATAGGCGATTTTT 58.615 47.619 0.00 0.00 0.00 1.94
98 99 2.067365 GGGGGTGAATAGGCGATTTT 57.933 50.000 0.00 0.00 0.00 1.82
99 100 3.821306 GGGGGTGAATAGGCGATTT 57.179 52.632 0.00 0.00 0.00 2.17
114 115 6.011481 AGAACTAATTATCGACTAGAGGGGG 58.989 44.000 0.00 0.00 0.00 5.40
115 116 7.527568 AAGAACTAATTATCGACTAGAGGGG 57.472 40.000 0.00 0.00 0.00 4.79
116 117 8.630917 TGAAAGAACTAATTATCGACTAGAGGG 58.369 37.037 0.00 0.00 0.00 4.30
121 122 9.084164 GCTGTTGAAAGAACTAATTATCGACTA 57.916 33.333 0.00 0.00 0.00 2.59
122 123 7.201444 CGCTGTTGAAAGAACTAATTATCGACT 60.201 37.037 0.00 0.00 0.00 4.18
123 124 6.895040 CGCTGTTGAAAGAACTAATTATCGAC 59.105 38.462 0.00 0.00 0.00 4.20
124 125 6.455113 GCGCTGTTGAAAGAACTAATTATCGA 60.455 38.462 0.00 0.00 0.00 3.59
125 126 5.672856 GCGCTGTTGAAAGAACTAATTATCG 59.327 40.000 0.00 0.00 0.00 2.92
126 127 5.965918 GGCGCTGTTGAAAGAACTAATTATC 59.034 40.000 7.64 0.00 0.00 1.75
127 128 5.414454 TGGCGCTGTTGAAAGAACTAATTAT 59.586 36.000 7.64 0.00 0.00 1.28
128 129 4.757657 TGGCGCTGTTGAAAGAACTAATTA 59.242 37.500 7.64 0.00 0.00 1.40
129 130 3.568007 TGGCGCTGTTGAAAGAACTAATT 59.432 39.130 7.64 0.00 0.00 1.40
130 131 3.146066 TGGCGCTGTTGAAAGAACTAAT 58.854 40.909 7.64 0.00 0.00 1.73
131 132 2.566913 TGGCGCTGTTGAAAGAACTAA 58.433 42.857 7.64 0.00 0.00 2.24
132 133 2.248280 TGGCGCTGTTGAAAGAACTA 57.752 45.000 7.64 0.00 0.00 2.24
133 134 1.267806 CATGGCGCTGTTGAAAGAACT 59.732 47.619 7.64 0.00 0.00 3.01
134 135 1.666888 CCATGGCGCTGTTGAAAGAAC 60.667 52.381 7.64 0.00 0.00 3.01
135 136 0.597568 CCATGGCGCTGTTGAAAGAA 59.402 50.000 7.64 0.00 0.00 2.52
136 137 1.865788 GCCATGGCGCTGTTGAAAGA 61.866 55.000 23.48 0.00 0.00 2.52
137 138 1.444895 GCCATGGCGCTGTTGAAAG 60.445 57.895 23.48 0.00 0.00 2.62
138 139 2.650196 GCCATGGCGCTGTTGAAA 59.350 55.556 23.48 0.00 0.00 2.69
163 164 4.559063 CAGGCTGGCCGAGATGGG 62.559 72.222 6.61 0.00 41.95 4.00
198 199 2.264794 GATCGTCCCAAGCACCGT 59.735 61.111 0.00 0.00 0.00 4.83
219 220 2.016393 TTCCGCGGCTTCTCATCGAT 62.016 55.000 23.51 0.00 0.00 3.59
241 242 3.364441 GGCACATGAGTTGGCGCA 61.364 61.111 10.83 0.00 31.41 6.09
511 551 2.027314 CTGCCGCTCTCTCCATCG 59.973 66.667 0.00 0.00 0.00 3.84
532 583 0.586319 GCGCCTATAAATTGCAGCGA 59.414 50.000 15.66 0.00 46.03 4.93
692 810 4.757354 CGCCAAAAGATGCGCGCA 62.757 61.111 38.27 38.27 44.64 6.09
767 885 3.914364 GCGTTACCATTCTGCTGAAAAAG 59.086 43.478 10.27 4.01 35.63 2.27
789 909 2.346803 CGGCCCAAGTATATCGAATGG 58.653 52.381 0.00 0.00 0.00 3.16
825 945 1.405121 CGGAAAGTGGTGGTAGTAGGC 60.405 57.143 0.00 0.00 0.00 3.93
831 951 2.751688 GGCCGGAAAGTGGTGGTA 59.248 61.111 5.05 0.00 0.00 3.25
834 954 2.035626 ATGGGCCGGAAAGTGGTG 59.964 61.111 5.05 0.00 0.00 4.17
835 955 2.035626 CATGGGCCGGAAAGTGGT 59.964 61.111 5.05 0.00 0.00 4.16
836 956 1.304052 TTCATGGGCCGGAAAGTGG 60.304 57.895 5.05 0.00 0.00 4.00
837 957 1.315257 CCTTCATGGGCCGGAAAGTG 61.315 60.000 5.05 0.00 0.00 3.16
838 958 1.000896 CCTTCATGGGCCGGAAAGT 60.001 57.895 5.05 0.00 0.00 2.66
857 977 1.677637 CCCCGCTGGAGAGTTACCTC 61.678 65.000 0.00 0.00 38.04 3.85
876 996 1.702491 GGGTTGTATGCCGCGAGAAC 61.702 60.000 8.23 1.74 0.00 3.01
878 998 2.185867 GGGTTGTATGCCGCGAGA 59.814 61.111 8.23 0.00 0.00 4.04
879 999 2.125310 TGGGTTGTATGCCGCGAG 60.125 61.111 8.23 0.00 0.00 5.03
880 1000 2.435234 GTGGGTTGTATGCCGCGA 60.435 61.111 8.23 0.00 0.00 5.87
881 1001 2.744318 TGTGGGTTGTATGCCGCG 60.744 61.111 0.00 0.00 0.00 6.46
882 1002 2.696759 GGTGTGGGTTGTATGCCGC 61.697 63.158 0.00 0.00 0.00 6.53
883 1003 0.891449 TTGGTGTGGGTTGTATGCCG 60.891 55.000 0.00 0.00 0.00 5.69
884 1004 0.601057 GTTGGTGTGGGTTGTATGCC 59.399 55.000 0.00 0.00 0.00 4.40
885 1005 0.239879 CGTTGGTGTGGGTTGTATGC 59.760 55.000 0.00 0.00 0.00 3.14
886 1006 0.239879 GCGTTGGTGTGGGTTGTATG 59.760 55.000 0.00 0.00 0.00 2.39
887 1007 0.891904 GGCGTTGGTGTGGGTTGTAT 60.892 55.000 0.00 0.00 0.00 2.29
888 1008 1.526455 GGCGTTGGTGTGGGTTGTA 60.526 57.895 0.00 0.00 0.00 2.41
889 1009 2.831284 GGCGTTGGTGTGGGTTGT 60.831 61.111 0.00 0.00 0.00 3.32
890 1010 2.830827 TGGCGTTGGTGTGGGTTG 60.831 61.111 0.00 0.00 0.00 3.77
891 1011 2.518349 CTGGCGTTGGTGTGGGTT 60.518 61.111 0.00 0.00 0.00 4.11
892 1012 3.767630 GACTGGCGTTGGTGTGGGT 62.768 63.158 0.00 0.00 0.00 4.51
893 1013 2.978010 GACTGGCGTTGGTGTGGG 60.978 66.667 0.00 0.00 0.00 4.61
894 1014 3.345808 CGACTGGCGTTGGTGTGG 61.346 66.667 0.00 0.00 34.64 4.17
895 1015 4.012895 GCGACTGGCGTTGGTGTG 62.013 66.667 4.21 0.00 43.41 3.82
912 1032 4.704833 CCAGTGCTCGTGTGGGGG 62.705 72.222 0.00 0.00 0.00 5.40
929 1054 1.534729 AACAGGCGGTTCCAGAATTC 58.465 50.000 0.00 0.00 33.35 2.17
949 1074 0.541998 TTCTCCGGTGGCAAGAGAGA 60.542 55.000 0.00 9.52 37.90 3.10
1070 1195 6.819146 AGAAGCTTTCTCTATTTTTCCTACCG 59.181 38.462 0.00 0.00 34.07 4.02
1098 1225 0.327259 CCTCCATGCATCGGATGGAT 59.673 55.000 17.93 17.93 46.65 3.41
1225 1361 2.764128 TGCTCCATCCCCGTCTCC 60.764 66.667 0.00 0.00 0.00 3.71
1297 1439 1.003464 ACATTTTCATTTGGCTGGGGC 59.997 47.619 0.00 0.00 37.82 5.80
1330 1472 4.266976 GCAGTAAAACATGCTGATTGATGC 59.733 41.667 0.00 0.00 43.78 3.91
1395 1540 1.351153 TAAAATGCACGCATCGACGA 58.649 45.000 4.73 0.00 35.31 4.20
1415 1560 6.277605 TCGATTGAGCGTTAATCCAGAAATA 58.722 36.000 5.45 0.00 32.26 1.40
1560 1747 8.214364 GGACTGAGAATATCTTATTTCCCAGTT 58.786 37.037 0.00 0.00 39.91 3.16
1779 1983 4.710324 ACGTGGAAAGTTGTTCCTCATAA 58.290 39.130 6.67 0.00 39.31 1.90
1780 1984 4.202274 TGACGTGGAAAGTTGTTCCTCATA 60.202 41.667 0.00 0.00 39.31 2.15
1806 2010 0.524862 CAGCAGCTCATTTTTCCGCT 59.475 50.000 0.00 0.00 0.00 5.52
1889 2094 1.790623 CGACAACGGTAAACCTCACAG 59.209 52.381 0.00 0.00 35.72 3.66
2055 2263 9.587772 TTGAGAGTGTATATTTCTAAGTTCTGC 57.412 33.333 0.00 0.00 0.00 4.26
2158 2371 3.924686 ACGTAATACTGAGAAACAAGGCG 59.075 43.478 0.00 0.00 0.00 5.52
2170 2383 7.981142 ACCCAATGAAACATTACGTAATACTG 58.019 34.615 19.95 12.50 0.00 2.74
2179 2392 5.757808 AGCAAACAACCCAATGAAACATTAC 59.242 36.000 0.00 0.00 0.00 1.89
2232 2498 6.992715 CAGGCAGTATAAACCTATACAAGCTT 59.007 38.462 0.00 0.00 41.64 3.74
2262 2529 5.247084 CCAGACAGTATAGTACTATCGGCT 58.753 45.833 18.68 12.94 37.31 5.52
2290 2557 0.320374 CGTGACAAAGGCCCTGACTA 59.680 55.000 9.39 0.00 0.00 2.59
2309 2576 7.690952 ATTATCCACTAGACGATTCCTAGAC 57.309 40.000 0.00 0.00 37.59 2.59
2310 2577 7.724506 ACAATTATCCACTAGACGATTCCTAGA 59.275 37.037 0.00 0.00 37.59 2.43
2317 2584 6.986817 CCAGAAACAATTATCCACTAGACGAT 59.013 38.462 0.00 0.00 0.00 3.73
2326 2593 3.565449 CCCCACCCAGAAACAATTATCCA 60.565 47.826 0.00 0.00 0.00 3.41
2330 2597 4.743705 TTACCCCACCCAGAAACAATTA 57.256 40.909 0.00 0.00 0.00 1.40
2360 2628 1.403814 AGGAAGAGATCGGCGATTCA 58.596 50.000 24.81 0.00 0.00 2.57
2366 2634 3.545366 ACCTAAAAGGAAGAGATCGGC 57.455 47.619 0.00 0.00 37.67 5.54
2376 2644 6.294361 TCGATTCATCTCAACCTAAAAGGA 57.706 37.500 0.00 0.00 37.67 3.36
2382 2650 4.822350 ACGAGATCGATTCATCTCAACCTA 59.178 41.667 9.58 0.00 46.51 3.08
2433 2701 4.214310 TCTTGCTGGTTTTCTGGAATTCA 58.786 39.130 7.93 0.00 0.00 2.57
2476 2744 1.070786 GGTTGTCGCTTGGTCCTCA 59.929 57.895 0.00 0.00 0.00 3.86
2481 2749 0.818040 GGTCAAGGTTGTCGCTTGGT 60.818 55.000 0.00 0.00 0.00 3.67
2484 2752 0.468226 TCTGGTCAAGGTTGTCGCTT 59.532 50.000 0.00 0.00 0.00 4.68
2496 2764 3.067106 GACGAAATTTCAGCTCTGGTCA 58.933 45.455 17.99 0.00 0.00 4.02
2714 2982 8.953990 CAACTGAAAATGTTAACGAAACTAAGG 58.046 33.333 0.26 0.00 38.99 2.69
2727 2995 8.947055 AAATTAGAGTTGCAACTGAAAATGTT 57.053 26.923 35.67 20.58 39.88 2.71
2793 3061 6.700020 CGTTGTCTAGCATCTTCATTAACAG 58.300 40.000 0.00 0.00 0.00 3.16
2857 3125 8.786898 AGGCAATATATAACTACTGCAAATGTG 58.213 33.333 7.04 0.00 0.00 3.21
2875 3143 5.105064 AGCATTTGCAAGAAGAAGGCAATAT 60.105 36.000 7.38 0.00 45.81 1.28
3056 3328 3.200593 CATCTGGCTGGCGCAGAC 61.201 66.667 10.83 7.84 40.49 3.51
3163 3435 4.116328 TCGACGCGAGCAAGGAGG 62.116 66.667 15.93 0.00 0.00 4.30
3250 3522 2.654877 GAACGGTTGGAGGCGAGA 59.345 61.111 0.00 0.00 0.00 4.04
3308 3580 2.747855 GGAAAGGTGCTGCTCCGG 60.748 66.667 14.44 0.00 0.00 5.14
3309 3581 2.747855 GGGAAAGGTGCTGCTCCG 60.748 66.667 14.44 0.00 0.00 4.63
3311 3583 3.435186 GCGGGAAAGGTGCTGCTC 61.435 66.667 0.00 0.00 43.79 4.26
3405 3752 4.699522 AACGGTTGGAGGCGAGGC 62.700 66.667 0.00 0.00 0.00 4.70
3406 3753 2.434359 GAACGGTTGGAGGCGAGG 60.434 66.667 0.00 0.00 0.00 4.63
3407 3754 2.809601 CGAACGGTTGGAGGCGAG 60.810 66.667 0.00 0.00 0.00 5.03
3408 3755 3.562779 GACGAACGGTTGGAGGCGA 62.563 63.158 9.95 0.00 0.00 5.54
3409 3756 3.110178 GACGAACGGTTGGAGGCG 61.110 66.667 9.95 3.77 0.00 5.52
3410 3757 2.741211 GGACGAACGGTTGGAGGC 60.741 66.667 9.95 0.00 0.00 4.70
3411 3758 1.374252 CTGGACGAACGGTTGGAGG 60.374 63.158 9.95 0.00 0.00 4.30
3412 3759 1.374252 CCTGGACGAACGGTTGGAG 60.374 63.158 9.95 0.00 0.00 3.86
3413 3760 2.738480 CCTGGACGAACGGTTGGA 59.262 61.111 9.95 0.00 0.00 3.53
3414 3761 2.358247 CCCTGGACGAACGGTTGG 60.358 66.667 0.00 0.00 0.00 3.77
3415 3762 1.666872 GACCCTGGACGAACGGTTG 60.667 63.158 0.00 0.00 0.00 3.77
3416 3763 2.739132 GACCCTGGACGAACGGTT 59.261 61.111 0.00 0.00 0.00 4.44
3417 3764 3.677648 CGACCCTGGACGAACGGT 61.678 66.667 1.79 0.00 35.52 4.83
3463 3810 3.435186 GAAAGGTGCTGCTCCGGC 61.435 66.667 14.44 5.19 39.26 6.13
3464 3811 2.747855 GGAAAGGTGCTGCTCCGG 60.748 66.667 14.44 0.00 0.00 5.14
3560 4118 2.809601 CGAACGGTTGGAGGCGAG 60.810 66.667 0.00 0.00 0.00 5.03
3676 4234 2.206487 CGACGACGAACGATCACCG 61.206 63.158 0.00 0.00 45.77 4.94
4024 4585 1.377856 GGCACCTTCCTTCCTCTGC 60.378 63.158 0.00 0.00 0.00 4.26
4330 4891 1.144057 CATTCGTAGCCGCCCTTCT 59.856 57.895 0.00 0.00 0.00 2.85
4457 5024 1.356624 GCGAGTTGCTGTTGTTGCT 59.643 52.632 0.00 0.00 41.73 3.91
4471 5038 3.127352 GAGGTAGCTCCACGGCGAG 62.127 68.421 16.62 5.31 39.02 5.03
4495 5071 4.776322 TGGAACATGCCGCCGAGG 62.776 66.667 0.00 0.00 44.97 4.63
4496 5072 3.499737 GTGGAACATGCCGCCGAG 61.500 66.667 0.00 0.00 44.52 4.63
4582 5176 2.372350 GTGGTCTTTTTCTTTGCGTCG 58.628 47.619 0.00 0.00 0.00 5.12
4870 5470 4.663444 ACGAGAGTGCTTGCAGAC 57.337 55.556 0.00 0.00 46.97 3.51
4915 5515 6.572519 TCTCAACTAAAGCAAAGCAAACAAT 58.427 32.000 0.00 0.00 0.00 2.71
4981 5897 0.317160 TGTCTACCCTCACTGCAACG 59.683 55.000 0.00 0.00 0.00 4.10
4988 5904 8.561738 TCTCAAATTTTATTGTCTACCCTCAC 57.438 34.615 0.00 0.00 0.00 3.51
5015 5931 5.565592 TCATGTGACACTTATCATTTGGC 57.434 39.130 7.20 0.00 0.00 4.52
5037 5953 1.873591 GCCGGAATTTCACGCATCTAT 59.126 47.619 5.05 0.00 0.00 1.98
5051 6292 1.152922 AAAAACGTCAGGGCCGGAA 60.153 52.632 8.28 0.00 0.00 4.30
5078 6319 3.442273 GGAATTTGCCGTATGACTGGAAA 59.558 43.478 0.00 0.00 28.88 3.13
5086 6327 4.574421 TGTATGACTGGAATTTGCCGTATG 59.426 41.667 0.00 0.00 0.00 2.39
5088 6329 3.936453 GTGTATGACTGGAATTTGCCGTA 59.064 43.478 0.00 0.00 0.00 4.02
5089 6330 2.747446 GTGTATGACTGGAATTTGCCGT 59.253 45.455 0.00 0.00 0.00 5.68
5099 6346 5.637810 ACATAAACTTGTCGTGTATGACTGG 59.362 40.000 8.77 1.94 43.64 4.00
5130 6536 6.621316 TGGCAACTTTCGTACTTCAATTTA 57.379 33.333 0.00 0.00 37.61 1.40
5131 6537 5.508200 TGGCAACTTTCGTACTTCAATTT 57.492 34.783 0.00 0.00 37.61 1.82
5134 6540 3.304391 GCATGGCAACTTTCGTACTTCAA 60.304 43.478 0.00 0.00 37.61 2.69
5135 6541 2.225491 GCATGGCAACTTTCGTACTTCA 59.775 45.455 0.00 0.00 37.61 3.02
5136 6542 2.225491 TGCATGGCAACTTTCGTACTTC 59.775 45.455 0.00 0.00 34.76 3.01
5137 6543 2.226330 TGCATGGCAACTTTCGTACTT 58.774 42.857 0.00 0.00 34.76 2.24
5139 6545 2.518949 CATGCATGGCAACTTTCGTAC 58.481 47.619 19.40 0.00 43.62 3.67
5140 6546 1.135431 GCATGCATGGCAACTTTCGTA 60.135 47.619 27.34 0.00 43.62 3.43
5157 8345 1.037493 TAGTTACGCGAGGATGGCAT 58.963 50.000 15.93 0.00 41.24 4.40
5201 8554 1.813753 CCCCGATAAGTGCCACACG 60.814 63.158 0.00 0.00 39.64 4.49
5216 8569 3.833732 AGAGTTTTTCTCAAAGGACCCC 58.166 45.455 0.00 0.00 44.98 4.95
5240 8593 2.478709 CCTGAGAAATCAGTCCGACGAG 60.479 54.545 0.00 0.00 36.06 4.18
5244 8597 0.173481 CGCCTGAGAAATCAGTCCGA 59.827 55.000 4.68 0.00 36.06 4.55
5246 8599 0.107945 AGCGCCTGAGAAATCAGTCC 60.108 55.000 2.29 0.00 36.06 3.85
5267 8620 2.935849 GGACACGTGTATGATGCAATGA 59.064 45.455 23.44 0.00 0.00 2.57
5269 8622 2.288666 GGGACACGTGTATGATGCAAT 58.711 47.619 23.44 0.00 0.00 3.56
5271 8624 0.107897 GGGGACACGTGTATGATGCA 60.108 55.000 23.44 0.00 0.00 3.96
5272 8625 0.107897 TGGGGACACGTGTATGATGC 60.108 55.000 23.44 7.79 33.40 3.91
5279 8632 2.528127 TCCCATGGGGACACGTGT 60.528 61.111 30.93 23.64 46.17 4.49
5310 8664 5.606348 AGAGATAGTTGAAGGTAAGGCTG 57.394 43.478 0.00 0.00 0.00 4.85
5314 8668 8.141268 GGATGAGAAGAGATAGTTGAAGGTAAG 58.859 40.741 0.00 0.00 0.00 2.34
5323 8677 5.830457 TGACGATGGATGAGAAGAGATAGTT 59.170 40.000 0.00 0.00 0.00 2.24
5342 8696 1.138266 GAAATCGGGGGAAGATGACGA 59.862 52.381 0.00 0.00 38.00 4.20
5343 8697 1.583054 GAAATCGGGGGAAGATGACG 58.417 55.000 0.00 0.00 0.00 4.35
5344 8698 1.477014 GGGAAATCGGGGGAAGATGAC 60.477 57.143 0.00 0.00 0.00 3.06
5345 8699 0.843984 GGGAAATCGGGGGAAGATGA 59.156 55.000 0.00 0.00 0.00 2.92
5346 8700 0.550914 TGGGAAATCGGGGGAAGATG 59.449 55.000 0.00 0.00 0.00 2.90
5347 8701 1.063942 GTTGGGAAATCGGGGGAAGAT 60.064 52.381 0.00 0.00 0.00 2.40
5350 8704 1.384975 GGTTGGGAAATCGGGGGAA 59.615 57.895 0.00 0.00 0.00 3.97
5369 8730 2.794820 GAAGAAGGCAGCGGCTGAGT 62.795 60.000 32.72 15.90 38.81 3.41
5375 8736 1.153469 GGAGAGAAGAAGGCAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
5376 8737 0.036952 TTGGAGAGAAGAAGGCAGCG 60.037 55.000 0.00 0.00 0.00 5.18
5378 8739 2.847327 TGTTGGAGAGAAGAAGGCAG 57.153 50.000 0.00 0.00 0.00 4.85
5401 8762 1.028868 GCATGCTGGTTGAGGGAGAC 61.029 60.000 11.37 0.00 0.00 3.36
5408 8769 0.251698 TCCATTGGCATGCTGGTTGA 60.252 50.000 20.42 9.37 0.00 3.18
5433 8794 2.032681 GGCACTGGTGTGGAGGAC 59.967 66.667 2.64 0.00 43.97 3.85
5444 8805 0.524862 GAGGAGCATTTGTGGCACTG 59.475 55.000 19.83 10.08 0.00 3.66
5448 8809 2.054453 GGGGAGGAGCATTTGTGGC 61.054 63.158 0.00 0.00 0.00 5.01
5453 8814 1.544917 ACCTGGGGGAGGAGCATTT 60.545 57.895 0.00 0.00 46.33 2.32
5454 8815 2.128226 ACCTGGGGGAGGAGCATT 59.872 61.111 0.00 0.00 46.33 3.56
5507 8868 3.181461 ACTCTTCCTCACAGTTCACTTGG 60.181 47.826 0.00 0.00 0.00 3.61
5656 9018 0.672401 GCAACACTAGCGGTAGCCAA 60.672 55.000 21.11 0.00 46.67 4.52
5667 9029 4.511454 GGCGATATCTCAATTGCAACACTA 59.489 41.667 0.00 0.00 37.91 2.74
5669 9031 3.621794 GGCGATATCTCAATTGCAACAC 58.378 45.455 0.00 0.00 37.91 3.32
5712 9074 3.195698 GAGCACCATCGCGGAACC 61.196 66.667 6.13 0.00 38.63 3.62
5713 9075 2.434185 TGAGCACCATCGCGGAAC 60.434 61.111 6.13 0.00 38.63 3.62
5714 9076 2.434185 GTGAGCACCATCGCGGAA 60.434 61.111 6.13 0.00 38.63 4.30
5753 9115 1.686355 TGTTGCAAATCCCAACGACT 58.314 45.000 0.00 0.00 44.12 4.18
5786 9148 0.965363 AACCGGGGCATGTTGTCATC 60.965 55.000 6.32 0.00 31.15 2.92
5787 9149 1.076549 AACCGGGGCATGTTGTCAT 59.923 52.632 6.32 0.00 34.21 3.06
5810 9172 1.375326 GACTCTCCAAACCCCGCTT 59.625 57.895 0.00 0.00 0.00 4.68
5813 9175 1.026718 GCATGACTCTCCAAACCCCG 61.027 60.000 0.00 0.00 0.00 5.73
5816 9178 1.200948 GCTTGCATGACTCTCCAAACC 59.799 52.381 3.33 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.